Biological complexity: life's required specific metals (Introduction)

by David Turell , Wednesday, January 26, 2022, 20:23 (818 days ago) @ David Turell

Cobalt is manly discussed:

https://phys.org/news/2022-01-cobalt-essential-life.html

"Cobalt sits in the center of the corrin ring of vitamin B12 and the important cobalamins we derive from it. Perhaps surprisingly, only two of our enzymes bother to use these painfully constructed and meticulously channeled cofactors. Why do our cells go to such great lengths to get a little bit of the cobalt magic, and what catalytic properties might make it so special?

"Other uncommon essential metals, like molybdenum, selenium and iodine, are similarly used only sparingly in cells, and yet we retain the ability to completely synthesize all the useful derivatives for these elements. To tame molybdenum, we construct an elaborate molybdopterin cofactor, while to harness iodine, we assemble thyroxine. To incorporate selenium into the few selenoproteins that require it, the elaborate SECIS machinery shuffles the mRNA code to attract a unique tRNA, upon which its cysteine cargo is transformed into selenocysteine. In each of these cases, researchers understand the special properties of the metals involved that make them indispensable.

"For example, compared to sulfur, selenium is a better nucleophile that will react with reactive oxygen species faster, but its lack of π-bond character means that it can also be more readily reduced. Selenoproteins like GPX4 (glutathione peroxidase) are correspondingly more resistant to both overoxidation and irreversible inactivation. Similarly, the ineluctable requirement for molybdenum, a two-electron redox compound that can shuttle between the +4/+5 and the +5/+6 redox couples, reflects several not-so-common skills. It can perform diverse and energetically challenging redox reactions; it can act as an electron sink or source at low redox potential; and (along with the much rarer tungsten) can effectively transfer oxygen and sulfur atoms during reactions taking place at low potential.

"A noteworthy attempt to divine the essential cobalt character was advanced in a recent commentary in PNAS by geochemist extraordinaire Michael Russell. Poised between Fe and Ni in the periodic table, Russell notes that "the element is particularly 'energy-dense' with paired electrons in the outer orbit. Its occurrence as a metal alloy in serpentinites with a variable valence extending from Co+ through to Co4+, its various spin states, and its contrasting conformations render it unique, with untold contributions to be made to electronics, catalysis and the emergence of life. Indeed, Co–Fe cooperation has just been investigated at the opposite end of the redox spectrum—the electrocatalysis of the O2 evolution reaction. Substitutions of Co are either unfeasible, as in metabolism and in some double-atom catalysis, or they lie in the somewhat remote future."

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"The form of vitamin B12 used by our methylmalonyl-CoA mutase enzyme located in mitochondria for fatty acid and amino acid breakdown is known as adenosylcobalamin (AdoCbl). The other cobalamin-utilizing enzyme, methionine synthase, acts in the cytosol and uses a methylcobalamin cofactor wherein the adenosyl group is replaced by a methyl group. Land plants and fungi neither synthesize or require cobalamin as they lack methylmalonyl-CoA mutase, and have different kind of methionine synthase that doesn't require B12. When these enzymes are not working properly, their precursor molecules can presumably build up to high levels, causing problems like demyelinating disease and pernicious anemia. (my bold)

"While cobalt's thermal stability and high energy density make it an ideal component for the cathodes of lithium batteries, it's usefulness to life comes from its many other unique properties, some discovered, and some still yet to be found."

Comment: These are metals are vital for our life to exist. Remember massive enzyme molecules are required. They didn't form by chance. Another irreducibly complex system requiring design. I wonder if God designed the periodic table of elements producing in advance these necessary elements. Note: llamas and its relatives in the Andes munching on plants in volcanic soils utilize two to eight milligrams a day of selenium. Selenium is extremely poisonous to us, so we can safely ingest one-two micrograms a day. I suspect when these camelids finally migrated to the Andes from Asia they adapted epigenetically.