Genome complexity: logical ordering of bacterial genes (Introduction)

by David Turell , Monday, April 14, 2025, 21:42 (5 days ago) @ David Turell

From recent studies:

https://www.sciencedaily.com/releases/2025/04/250410160707.htm

"Bioinformaticians have established that the genes in bacterial genomes are arranged in a meaningful order. They describe that the genes are arranged by function: If they become increasingly important at faster growth, they are located near the origin of DNA replication. Accordingly, their position influences how their activity changes with the growth rate.

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"In the journal Science, they describe that the genes are arranged by function: If they become increasingly important at faster growth, they are located near the origin of DNA replication. Accordingly, their position influences how their activity changes with the growth rate.

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"When bacteria replicate their genetic material in preparation for cell division, the process starts at a specific point on the bacterial chromosome and continues along the chromosome in both directions.

"Dr Xiao-Pan Hu from HHU, lead author of the study now published in Science: "For a short time during this process, there are more copies of those genes located closer to the origin of replication than of those located further away. Accordingly, genes close to the origin can be read more frequently."

"'We have established that these genes are particularly important for cell growth -- e.g. those whose products assemble the proteins of the bacteria," adds Professor Lercher, corresponding author of the study.

"By contrast, genes rarely needed in the growth phases are usually found at the opposing end of the chromosome, where they are duplicated late in the process.

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"They found that the positioning of the genes along the chromosome must have arisen as a consequence of evolutionary pressure, as those bacteria that can grow particularly quickly as a result of optimally placed genes have an evolutionary advantage.

"Dr Hu: "We now understand better how bacteria control their genes. The results really surprised us. They provide an excellent explanation of an important aspect of bacterial evolution: The right genomic positioning gave the bacteria existing today an advantage over their rivals.'"

Comment: if this developed by natural trial and error would bacteria every survive? Why are we surprised by finding logical designs in every research into how life works?