Chimps'r' not us: DNA differences (Introduction)

by David Turell , Monday, May 27, 2019, 18:52 (1802 days ago) @ David Turell

Recently analyzed differences:

https://phys.org/news/2019-05-scientists-uncover-trove-genes-key.html

"Researchers at the Donnelly Centre in Toronto have found that dozens of genes, previously thought to have similar roles across different organisms, are in fact unique to humans and could help explain how our species came to exist.

"These genes code for a class of proteins known as transcription factors, or TFs, which control gene activity. TFs recognize specific snippets of the DNA code called motifs, and use them as landing sites to bind the DNA and turn genes on or off.

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"the researchers describe a new computational method which allowed them to more accurately predict motif sequences each TF binds in many different species. The findings reveal that some sub-classes of TFs are much more functionally diverse than previously thought.

"'Even between closely related species there's a non-negligible portion of TFs that are likely to bind new sequences," says Sam Lambert, former graduate student in Hughes' lab who did most of the work on the paper and has since moved to the University of Cambridge for a postdoctoral stint.

"'This means they are likely to have novel functions by regulating different genes, which may be important for species differences," he says.

"Even between chimps and humans, whose genomes are 99 per cent identical, there are dozens of TFs which recognize diverse motifs between the two species in a way that would affect expression of hundreds of different genes.

"'We think these molecular differences could be driving some of the differences between chimps and humans," says Lambert, who won the Jennifer Dorrington Graduate Research Award for outstanding doctoral research at U of T's Faculty of Medicine.

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"When Lambert compared all TFs across different species and matched to all available motif sequence data, he found that many human TFs recognize different sequences—and therefore regulate different genes— than versions of the same proteins in other animals.

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"As for TFs that have unique human roles, these belong to the rapidly evolving class of so-called C2H2 zinc finger TFs, named for zinc ion-containing finger-like protrusions, with which they bind the DNA.

Their role remains an open question but it is known that organisms with more diverse TFs also have more cell types, which can come together in novel ways to build more complicated bodies.

"Hughes is excited about a tantalizing possibility that some of these zinc finger TFs could be responsible for the unique features of human physiology and anatomy—our immune system and the brain, which are the most complex among animals. Another concerns sexual dimorphism:

"countless visible, and often less obvious, differences between sexes that guide mate selection—decisions that have an immediate impact on reproductive success, and can also have profound impact on physiology in the long term. The peacock's tail or facial hair in men are classic examples of such features."

Comment: Other analyses have estimated the bases may be alike at 98% totals but different gene expressions makes the difference 78%.