Evolution (Introduction)

by David Turell @, Tuesday, July 14, 2009, 14:23 (5407 days ago)

The following study traces the earliest chemical traces of life to the Cambrian era. Fascinating theory if true, as it shows the interplay of biogeology, greenhouse gases, the appearance of atmospheric oxygen, and the development of more complex animals. - http://www.newscientist.com/article/mg20327161.200-dawn-of-the-animals-solving-darwins-...

Evolution

by George Jelliss ⌂ @, Crewe, Wednesday, July 15, 2009, 10:43 (5406 days ago) @ David Turell

There's a nice little video just been published by Richard Dawkins about Whale evolution: - http://richarddawkins.net/article,4058,RDF-TV---Show-me-the-intermediate-fossils,Richar... - I was a bit puzzled by DT's comment in the "Why is ..." thread where he says: "there is still no evidence for macroevolution, only microevolution". Isn't the above an example of macroevolution? Or do you mean something else by the term?

--
GPJ

Evolution

by David Turell @, Wednesday, July 15, 2009, 19:36 (5406 days ago) @ George Jelliss

I was a bit puzzled by DT's comment in the "Why is ..." thread where he says: "there is still no evidence for macroevolution, only microevolution". Isn't the above an example of macroevolution? Or do you mean something else by the term? - Thanks for showing us that link. To paraphrase Darwin: he said that little bitty steps to make an organ must be present. If an organ could not be made that way, it would negate his theory. Gould, again paraphrased, said that one of the paleontologist secrets of the tree of life is all we had were fossil tips and nodes of the tree. He and Eldridge invented the term punctuated equilibrium to try to explain the skips in time and form. What Dawkins showed in the website were analagous and he stated chemical confirmation (homologous) of the fossils presented, again which were large jumps between forms. This confims macroevolution occurs, but not in the tiny steps Darwin envisioned. We still do not know how macroevolution is achieved: large jumps or tiny steps. That issue is of major importance to arriving at a final and definitive theory of evolution.
I am sorry I was somewhat obtuse.

Evolution

by xeno6696 @, Sonoran Desert, Wednesday, July 15, 2009, 23:16 (5405 days ago) @ David Turell

I was a bit puzzled by DT's comment in the "Why is ..." thread where he says: "there is still no evidence for macroevolution, only microevolution". Isn't the above an example of macroevolution? Or do you mean something else by the term?
> 
> Thanks for showing us that link. To paraphrase Darwin: he said that little bitty steps to make an organ must be present. If an organ could not be made that way, it would negate his theory. Gould, again paraphrased, said that one of the paleontologist secrets of the tree of life is all we had were fossil tips and nodes of the tree. He and Eldridge invented the term punctuated equilibrium to try to explain the skips in time and form. What Dawkins showed in the website were analagous and he stated chemical confirmation (homologous) of the fossils presented, again which were large jumps between forms. This confims macroevolution occurs, but not in the tiny steps Darwin envisioned. We still do not know how macroevolution is achieved: large jumps or tiny steps. That issue is of major importance to arriving at a final and definitive theory of evolution.
> I am sorry I was somewhat obtuse. - Thanks... I was trying to figure out how to process "evolution definitely happened" and "macroevolution is unproven." - Is part of your grander argument one of "there is a general build from less complex to more complex, leading to us?"

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by George Jelliss ⌂ @, Crewe, Thursday, July 16, 2009, 08:19 (5405 days ago) @ David Turell

I still don't quite understand your distinction between micro- and macro- evolution. - You wrote: "We still do not know how macroevolution is achieved: large jumps or tiny steps. That issue is of major importance to arriving at a final and definitive theory of evolution." - In the video RD indicates that in the evolution of the whale the nostril of the creature gradually moved up and back to become the blow hole, and that the back legs atrophied, and the body streamlined. All these processes could clearly be accomplished by very small steps, not requiring any large jumps. - Is your case simply that because there are gaps in the fossil record we are not justified in making this claim? If so I don't see how the case could ever be proved to your satisfaction. Even a film of a flower growing has to be done by time-lapse photography. The fossil evidence for evolution is rather like time-lapse photography, but on a much slower or larger scale.

--
GPJ

Evolution

by xeno6696 @, Sonoran Desert, Thursday, July 16, 2009, 12:57 (5405 days ago) @ George Jelliss

I still don't quite understand your distinction between micro- and macro- evolution.
> 
> You wrote: "We still do not know how macroevolution is achieved: large jumps or tiny steps. That issue is of major importance to arriving at a final and definitive theory of evolution."
> 
> In the video RD indicates that in the evolution of the whale the nostril of the creature gradually moved up and back to become the blow hole, and that the back legs atrophied, and the body streamlined. All these processes could clearly be accomplished by very small steps, not requiring any large jumps.
> 
> Is your case simply that because there are gaps in the fossil record we are not justified in making this claim? If so I don't see how the case could ever be proved to your satisfaction. Even a film of a flower growing has to be done by time-lapse photography. The fossil evidence for evolution is rather like time-lapse photography, but on a much slower or larger scale. - The only thing I can think of is that he means microevolution to mean the observed changes we can actually see in say, bacterial populations, the rock-wallaby experiment back in the 50's, or something of that nature. - What I take as his meaning of macroevolution is the generation of radically new traits in geologically short time spans, such as the cambrian explosion. He said here that he would take chemical arguments in lieu of fossil evidence, however we understand so little about gene regulation & expression and the nature of "junk" DNA that it will probably be another 60-70 years before we have that solution. This is part of the reason I'm thinking heavily about joining that mathematical biology group... if this method works we might have an answer sooner than that. - He suggested way back when I joined that he finds information-theoretic arguments such as Dembski's as a potential flaw in evolution. I did my best to shed light on the truth of where that theory fails. I never did ask for a follow-up, however.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Thursday, July 16, 2009, 14:43 (5405 days ago) @ xeno6696

I'll need some time to fill in my reasoning in an other post on macroevolution and information theory to answer Matt and George. Currently I simply want to enter a link on evolutionary psychology, which indicates its just-so stories have reached an end point where the critics are booting it out of scientific discussions. The early work on hunter-gatherer group dynamics I thought was right on and I still see traces of our stone age brain in societal problems at very basic levels. See Robert Wright: "Non-Zero", 2000. - http://www.newsweek.com/id/202789

Evolution

by David Turell @, Friday, July 17, 2009, 13:56 (5404 days ago) @ xeno6696

He suggested way back when I joined that he finds information-theoretic arguments such as Dembski's as a potential flaw in evolution. I did my best to shed light on the truth of where that theory fails. I never did ask for a follow-up, however. - The following article indicates why I am so interested in the issue of 'information' and how it was developed during the evolutinary process. All living matter lives by code. - http://www.nature.com/nrg/journal/v10/n8/abs/nrg2548.html?lang=en - I promise to answer other issues in Matt's and George's posts a little later when time is available. Our drought at the ranch makes watering the pastures a major time consumer.

Evolution

by xeno6696 @, Sonoran Desert, Friday, July 17, 2009, 23:59 (5403 days ago) @ David Turell

He suggested way back when I joined that he finds information-theoretic arguments such as Dembski's as a potential flaw in evolution. I did my best to shed light on the truth of where that theory fails. I never did ask for a follow-up, however.
> 
> The following article indicates why I am so interested in the issue of 'information' and how it was developed during the evolutinary process. All living matter lives by code.
> 
> http://www.nature.com/nrg/journal/v10/n8/abs/nrg2548.html?lang=en
> 
> I promise to answer other issues in Matt's and George's posts a little later when time is available. Our drought at the ranch makes watering the pastures a major time consumer. - I had to drop my subscription to Nature for financial reasons this year. You don't by chance have another site or paper?

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Saturday, July 18, 2009, 14:07 (5403 days ago) @ xeno6696

I had to drop my subscription to Nature for financial reasons this year. You don't by chance have another site or paper? - Not at the moment, but as I spot stuff I'll put it in a post. The information in the DNA/RNA code is always present; there is no living organism without it. Just imagine: Inorganic matter somehow makes living organic matter with an information code. Have you ever seen a spontaneously appearing code? I knew that abstract would tickle your fancy, with your interest in mathematical aspects in biology.

Evolution

by David Turell @, Saturday, July 18, 2009, 14:31 (5403 days ago) @ David Turell

An interesting speculation about Neanderthal populations as We arrived in Europe about 45,000 years ago. - http://www.newscientist.com/article/dn17477-why-neanderthals-were-always-an-endangered-...

Evolution

by David Turell @, Friday, July 17, 2009, 20:27 (5404 days ago) @ xeno6696

I think Matt is closer to understanding my pattern of theorizing than George is. - 
> I still don't quite understand your distinction between micro- and macro- evolution. - Microevolution is variations in species adapting to changes in environment, etc. These are small and the species can still be identified as the same species. Macroevolution is the appearance of new species from the old ones, a definite step forward in the m ore complex direction that evolution has followed. Once again, just as it is obvious life came somehow from non-life, it is obvious that more and more complex life is the course of evolution. It is obvious that evolution happened. We don't need the first chapters of Genesis to demand instant creation of all species in one week. If God created evolution as His process, I suppose we could see there was an instant creation, but evolution started about 3.8 billion years ago.
 
> You wrote: "We still do not know how macroevolution is achieved: large jumps or tiny steps. - That is correct. We don't know if Darwin's tiny steps are the method, or Gould's punctuated equilibrium is. Or do both occur?
> > All these processes could clearly be accomplished by very small steps, not requiring any large jumps.
 
Your statement is obviously true, but that does not answer my question. - > Is your case simply that because there are gaps in the fossil record we are not justified in making this claim? - Gould's comment about tips and nodes of the tree is well known and recognizes gaps, but yet he and Eldridge proposed punctuated equilibrium which allows a mechanism of large jumps. So which is it? Tiny steps, large jumps, or both? - > The only thing I can think of is that he means microevolution to mean the observed changes we can actually see in say, bacterial populations, the rock-wallaby experiment back in the 50's, or something of that nature. 
 
I don't know the rock-wallaby experiment. I've seen Wallabies in Australia. - 
> What I take as his meaning of macroevolution is the generation of radically new traits in geologically short time spans, such as the cambrian explosion. He said here that he would take chemical arguments in lieu of fossil evidence, however we understand so little about gene regulation & expression and the nature of "junk" DNA that it will probably be another 60-70 years before we have that solution - Yes chemical arguments are a major requirement of further studies. Anatomical comparisons do clearly yield evidence of homology. And this will not take 60 years, judging by how fast DNA research has proceeded. Look at all the Neanderthal info we are getting. - 
> He suggested way back when I joined that he finds information-theoretic arguments such as Dembski's as a potential flaw in evolution. - Note my recent post that referred to information passing in the cell. Where does the information come from or how does it develop? Darwin and currently Neo-Darwinism do not address that.

Evolution

by David Turell @, Friday, July 17, 2009, 22:54 (5404 days ago) @ David Turell

Correction:
> Yes chemical arguments are a major requirement of further studies. Anatomical comparisons do NOT clearly yield evidence of homology. And this will not take 60 years, judging by how fast DNA research has proceeded. Look at all the Neanderthal info we are getting. - Still not editing well. I'm doing things in a rush because of the ranch. Not typing well. I have two bandaged right fingers. Burned by soldering iron fixing wires on a small tractor.

Evolution

by xeno6696 @, Sonoran Desert, Saturday, July 18, 2009, 00:04 (5403 days ago) @ David Turell
edited by unknown, Saturday, July 18, 2009, 00:13

Dr. Turell, - I will have to dig for the Wallaby experiment. I think it was Eldridge, but it showed how in 50 years speciation and dramatic shift in phenotype happened in an isolated group of Rock Wallaby. I'm sure you're familiar with the definition of speciation but I'll print it for anyone who reads this: It is a difference drastic enough that the "child" group can no longer mate with the "parent" group. (Sorry, my biology terminolgy is REALLY rusty.) - 
So far: - http://www.suite101.com/discussion.cfm/atheism/95745/838506 - Just that of a creationist using the rock wallaby argument to claim a 6000 yr earth is viable. - http://www.bioone.org/doi/abs/10.1644/1545-1542%282002%29083%3C0437%3AMGAOTN%3E2.0.CO%3... - Here's a better one that discusses the full taxonomic difference. - What about rapid changes in phenotype arising from incestuous unions? That's how we got our varieties of dogs...

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Saturday, July 18, 2009, 13:55 (5403 days ago) @ xeno6696

http://www.bioone.org/doi/abs/10.1644/1545-1542%282002%29083%3C0437%3AMGAOTN%3E2.0.CO%3... 
> Here's a better one that discusses the full taxonomic difference. - 
As I read the abstract the two separated groups of W's are still the same species and can mate. There is some drift as the climates are different and offer different challenges.

Evolution

by xeno6696 @, Sonoran Desert, Saturday, July 18, 2009, 16:36 (5403 days ago) @ David Turell

As I read the abstract the two separated groups of W's are still the same species and can mate. There is some drift as the climates are different and offer different challenges. - That's what I get for trusting memory, heh. - At any rate I don't think that would have been the kind of speciation that you're looking for anyway.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Sunday, July 19, 2009, 02:00 (5402 days ago) @ xeno6696

At any rate I don't think that would have been the kind of speciation that you're looking for anyway. - No, you are correct. I am looking for true speciation. But the issue of mating or not mating is a problem as the definition. After all, we can have tigrons and ligers. Horse and donkey give a mule. - On the Grand Canyon the North Rim squirrels differ from the South Rim variety; at some point the original squirrels were all the same but became separated as the river cut through the rising plateau over a 10 million year period. North Rim at 9,000 feet, South at 7,000. Now exposed to difffering climates, they are different, but I'll bet (without looking it up) they can mate.

Evolution

by xeno6696 @, Sonoran Desert, Sunday, July 19, 2009, 04:48 (5402 days ago) @ David Turell

At any rate I don't think that would have been the kind of speciation that you're looking for anyway.
> 
> No, you are correct. I am looking for true speciation. But the issue of mating or not mating is a problem as the definition. After all, we can have tigrons and ligers. Horse and donkey give a mule. 
> - Well, I promise you--that is the working definition that biologists use to describe speciation. Problems or not, its the one in use.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Sunday, July 19, 2009, 14:26 (5402 days ago) @ xeno6696
edited by unknown, Sunday, July 19, 2009, 14:36

But the issue of mating or not mating is a problem as the definition. After all, we can have tigrons and ligers. Horse and donkey give a mule. 
 
> Well, I promise you--that is the working definition that biologists use to describe speciation. Problems or not, its the one in use. - I know that. Just pointing out that rules have problems and biology is not as pure as math, as you have mentioned. Some things called species by analogy may not be if only morphology is used to differentiate. - Dawkins' Dogma are much too narrow!: - http://www.newscientist.com/article/mg20327176.800-comment-the-dawkins-dogma.html?page=1

Evolution

by xeno6696 @, Sonoran Desert, Sunday, July 19, 2009, 19:18 (5402 days ago) @ David Turell

I know that. Just pointing out that rules have problems and biology is not as pure as math, as you have mentioned. Some things called species by analogy may not be if only morphology is used to differentiate.
> 
> Dawkins' Dogma are much too narrow!: 
> 
> http://www.newscientist.com/article/mg20327176.800-comment-the-dawkins-dogma.html?page=1 - Interesting article. I guess I never really knew exactly how influential Dawkins was within the field. I suppose I would have had to get to graduate school in order to see the undercurrents because the undergrad education essentially depicts a unified whole. Its good to remember that biology has more in common with social sciences than physics/math. It isn't nearly as unified. I need reminders sometimes. This is why that Math/bio Prof I interviewed with mentioned a couple of times that biology is sorely lacking its own Newton, but his view (as a biologist) is that the unification isn't going to happen by biologists but by mathematicians. - Heh, too much rambling. Sorry...

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Wednesday, July 22, 2009, 13:41 (5399 days ago) @ David Turell
edited by unknown, Wednesday, July 22, 2009, 14:16

But the issue of mating or not mating is a problem as the definition. After all, we can have tigrons and ligers. Horse and donkey give a mule. 
> 
> > Well, I promise you--that is the working definition that biologists use to describe speciation. Problems or not, its the one in use.
> 
> I know that. Just pointing out that rules have problems and biology is not as pure as math, as you have mentioned. Some things called species by analogy may not be if only morphology is used to differentiate. - This article shows how carefully three species of horned toad were established: Genetics, morphology , and ecology: - http://www.physorg.com/news167409453.html - And another article with some insight into my previous discussion of tiny steps and big jumps to create speciation. Note in the first paragraph all the Darwin fluff. The second paragraph illustrates my point. How do you get from no wings to wings by Darwin's theory? - http://www.sciencedaily.com/releases/2009/07/090720163716.htm

Evolution

by George Jelliss ⌂ @, Crewe, Wednesday, July 22, 2009, 19:38 (5399 days ago) @ David Turell

DT: How do you get from no wings to wings by Darwin's theory? - You are getting to sound more and more like a creationist! It seems perfectly possible to get from no wings to wings in small steps. In the case of wings on birds it is evident from the bone structure that they developed from limbs and hands. Flight with flapping wings can be reached via a gliding stage. - Wings on insects of course are a different kind of structure. Acording to P. Z. Myers they evolved from gills (I didn't even know insects had gills!): - http://pharyngula.org/index/weblog/comments/flap_those_gills_and_fly/ - In the case of the whale evolution we were discussing earlier. I don't see where your "macro-evolution" is necessary. The processes involved are smooth transformations like stretching or contracting or deforming. There is no evidence for any part of this process happening suddenly.

--
GPJ

Evolution

by David Turell @, Wednesday, July 22, 2009, 20:43 (5399 days ago) @ George Jelliss

DT: How do you get from no wings to wings by Darwin's theory? - From the pharyngujla website: 
"The question is how insect wings evolved. Wings are a classic issue in evolution, because they aren't going to function for flight at all until they've achieved a certain minimal size—half a wing isn't any good at all for getting an animal in the air, so any explanation for their selective evolution has to incorporate alternative functions: as stabilizers for cursorial animals, for instance, or traps for catching small prey on the run." - The quote is supposition. You see, any just-so story will fill in the evolutionary gaps. The fossil gaps are there and we don't have the fossils to show itty-bitty steps, just as in the whales below, and your just-so story about birds immediately below.
 
> You are getting to sound more and more like a creationist! It seems perfectly possible to get from no wings to wings in small steps. In the case of wings on birds it is evident from the bone structure that they developed from limbs and hands. Flight with flapping wings can be reached via a gliding stage. - 'Can be' is not proof.
 
> In the case of the whale evolution we were discussing earlier. I don't see where your "macro-evolution" is necessary. The processes involved are smooth transformations like stretching or contracting or deforming. There is no evidence for any part of this process happening suddenly. - Nor is there any evidence of this happening slowly. - My answer to both pargraphs above is the same. There are fossil gaps, so we cannot answer the question of whether there are the tiny steps always or are there occasions for giant steps. I don't know. I can't answer that question from the evidence we have presented to us. We do not know if Darwin'as proposal in true or not. You want to believe in it with no evidence, just theory. I want evidence. Yesterday I presented a paper that defined three species of horned toad on good evidence: genetic, morphologic, and environmental. Fine paper. Good proof. That is all I am asking, and I admit that with the proper evidence Darwin will be proven correct. But not so far.

Evolution

by xeno6696 @, Sonoran Desert, Wednesday, July 22, 2009, 23:55 (5398 days ago) @ David Turell

Dr. Turell, - > > You are getting to sound more and more like a creationist! It seems perfectly possible to get from no wings to wings in small steps. In the case of wings on birds it is evident from the bone structure that they developed from limbs and hands. Flight with flapping wings can be reached via a gliding stage. 
> 
> 'Can be' is not proof.
> 
> > In the case of the whale evolution we were discussing earlier. I don't see where your "macro-evolution" is necessary. The processes involved are smooth transformations like stretching or contracting or deforming. There is no evidence for any part of this process happening suddenly.
> 
> Nor is there any evidence of this happening slowly. - It seems to me that your argument here again comes down to the necessity for evolution to be 'proven' true (a specious claim because natural science relies on evidence-based inference not proof) is a specimen from every generation or at least say, 1 every 1000 years. In the case of the whale, considering that we can geologically age the samples I think that shows fairly well that the process is slow. At least with whales. - - > 
> My answer to both pargraphs above is the same. There are fossil gaps, so we cannot answer the question of whether there are the tiny steps always or are there occasions for giant steps. I don't know. I can't answer that question from the evidence we have presented to us. We do not know if Darwin'as proposal in true or not. You want to believe in it with no evidence, just theory. I want evidence. Yesterday I presented a paper that defined three species of horned toad on good evidence: genetic, morphologic, and environmental. Fine paper. Good proof. That is all I am asking, and I admit that with the proper evidence Darwin will be proven correct. But not so far. - Maybe its your use of language but George is right that you seem to say evolution is right, and then evolution is wrong in the next breath. I think what you mean to be skeptical about is the specific means of evolution and not evolution itself. It takes a few more keystrokes but I think it would clear up some confusion about how you present your views if you would perhaps criticize the 'by natural selection' part when referring to Darwin's original theory.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Thursday, July 23, 2009, 02:38 (5398 days ago) @ xeno6696

It seems to me that your argument here again comes down to the necessity for evolution to be 'proven' true (a specious claim because natural science relies on evidence-based inference not proof) is a specimen from every generation or at least say, 1 every 1000 years. In the case of the whale, considering that we can geologically age the samples I think that shows fairly well that the process is slow. At least with whales. - 
Not only whales. The process is slow for all species, except the Cambrian Explosion. I don't know why the confusion. Evolution occurred. No doubt. It is the method evolution uses to advance to new species that I question. Small, even tiny steps or jumps. The evidence currently present does not allow us to make a decision. - - > > My answer to both paragraphs above is the same. There are fossil gaps, so we cannot answer the question of whether there are the tiny steps always or are there occasions for giant steps. I don't know. I can't answer that question from the evidence we have presented to us. We do not know if Darwin'as proposal in true or not. You want to believe in it with no evidence, just theory. I want evidence. Yesterday I presented a paper that defined three species of horned toad on good evidence: genetic, morphologic, and environmental. Fine paper. Good proof. That is all I am asking, and I admit that with the proper evidence Darwin will be proven correct. But not so far. - I don't know why the above paragraph is confusing. - 
> I think what you mean to be skeptical about is the specific means of evolution and not evolution itself. - That is exactly what I mean. I am making a fine point about the current state of evidence, not that evolution did not happen. In all my posts I have accepted that evolution happened. I have always questioned the method.

Evolution

by xeno6696 @, Sonoran Desert, Thursday, July 23, 2009, 03:46 (5398 days ago) @ David Turell


> Not only whales. The process is slow for all species, except the Cambrian Explosion. I don't know why the confusion. Evolution occurred. No doubt. It is the method evolution uses to advance to new species that I question. Small, even tiny steps or jumps. The evidence currently present does not allow us to make a decision.
> - But we can make decisions about several cases. - - > 
> 
> > > My answer to both paragraphs above is the same. There are fossil gaps, so we cannot answer the question of whether there are the tiny steps always or are there occasions for giant steps. I don't know. I can't answer that question from the evidence we have presented to us. We do not know if Darwin'as proposal in true or not. You want to believe in it with no evidence, just theory. I want evidence. Yesterday I presented a paper that defined three species of horned toad on good evidence: genetic, morphologic, and environmental. Fine paper. Good proof. That is all I am asking, and I admit that with the proper evidence Darwin will be proven correct. But not so far.
> 
> I don't know why the above paragraph is confusing. - What it is, is that in common parlance of people (like myself) who have previously spent fighting a long time (in my case, usenet and the old delphi forums starting back in '98) creationists who create a 1:1 correspondence that Darwin = Evolution. So when you say "Darwin will be proven correct. But not so far." this sounds like to the colloquial language of your typical creationist and it is VERY hard not to read that as an attack against evolution. When reading books such as "Denying Evolution" I'm used to seeing evolutionary biologists separate the terms "Evolution" and "Natural selection" to deliberately avoid this kind of confusion when the biologists debate the exact nature of what caused evolution. I apologize if this is too pedantic but I bet this is why George reads you the way he does. And I do--until I catch myself.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Thursday, July 23, 2009, 06:05 (5398 days ago) @ xeno6696

That is all I am asking, and I admit that with the proper evidence Darwin will be proven correct. But not so far. - 
> So when you say "Darwin will be proven correct. But not so far." I apologize if this is too pedantic but I bet this is why George reads you the way he does. And I do--until I catch myself. - My sentence does not say what you imply. Parse the sentence. Perhaps I should have written it differently and used 'would' rather than 'will'. Note I said "with proper evidence"; there is none at this time, and there may never be evidence to prove him correct, that it takes tiny steps to go from existing species to new species. - Darwin's famous quote: "If it could be demonstrated that any complex organ existed which could not possibly been formed by numerous, successive, slight modifications, my theory would absolutely break down." It is still evolution if a complex organ appeared in a large jump. We know Darwin's proposal. We see evolution, but once again, there is no absolute proof that it is tiny modifications, or large jumps or both. It is evolution either way. With large jumps the only thing that breaks down is Darwin's theory of a series of slight modifications. I also understand that philosophically large jumps are disturbing to many people. It adds a large measure of complexity to the evolutionary process, because it makes the coding in DNA/RNA very potent. For the moment I'll leave it at that.

Evolution

by David Turell @, Thursday, July 23, 2009, 19:59 (5398 days ago) @ David Turell

I wish to give a further expression of my thinking about Darwin and persons' responses to his writing and his theory: - I don't think my writing is that obtuse. I am arguing methodology of evolution, but not denying an evolutionary process existed and exists. What I am encountering, is a rigid fixation of thought on Darwin, so strong, that if in a discussion of evolution it is stated that change may not be accomplished by tiny modifications only, Darwin and evolution have been denied as if they are Siamese twins. It is as if Darwin invented evolution, and described the single (only) method for evolution, so if changed in any conceptual way, it cannot exist without him. I have brought up the issue of large jumps or changes. The folks who do research in evolution even have a term for large sudden changes. It is 'saltation'. Why the term if sudden large changes never happen? Did Darwin write inerrant gospel? Are the persons who think in this way simply Darwinian acolytes who can accept no thoughtful discussion of him or his theory?

Evolution

by xeno6696 @, Sonoran Desert, Friday, July 24, 2009, 00:09 (5397 days ago) @ David Turell

I wish to give a further expression of my thinking about Darwin and persons' responses to his writing and his theory:
> 
> I don't think my writing is that obtuse. I am arguing methodology of evolution, but not denying an evolutionary process existed and exists. What I am encountering, is a rigid fixation of thought on Darwin, so strong, that if in a discussion of evolution it is stated that change may not be accomplished by tiny modifications only, Darwin and evolution have been denied as if they are Siamese twins. It is as if Darwin invented evolution, and described the single (only) method for evolution, so if changed in any conceptual way, it cannot exist without him. I have brought up the issue of large jumps or changes. The folks who do research in evolution even have a term for large sudden changes. It is 'saltation'. Why the term if sudden large changes never happen? Did Darwin write inerrant gospel? Are the persons who think in this way simply Darwinian acolytes who can accept no thoughtful discussion of him or his theory? - From my time spent in usenet, I would be forced to say yes. At least among the masses. There's a "fundamental atheism" inspired by Sam Harris and Dawkins that is helping to spawn a religious analog, if religion is taken by its root words "relig aire." (To fashion together.) But I will add that at least in the U.S. it is directly fed by fundamentalist Christians who as you are aware of are pretty politically powerful in the U.S. Most of the debate isn't scientific at all and is purely political--on both ends. (More "Denying Evolution" again.) This is why the answer to your question above is actually "yes." This is also why Design has been given such an incredibly bad name, from a valid philosophical position, to a pseudoscience. It is not however, why I don't favor it. That's more from what I've identified as my own extreme skepticism.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Friday, July 24, 2009, 01:47 (5397 days ago) @ xeno6696
edited by unknown, Friday, July 24, 2009, 02:02

Most of the debate isn't scientific at all and is purely political--on both ends. (More "Denying Evolution" again.) This is why the answer to your question above is actually "yes." This is also why Design has been given such an incredibly bad name, from a valid philosophical position, to a pseudoscience. - I think you are right on about Intelligent design., i.e., its validity. One of the unfortunate parts of it are its connection to everyday Christianity as well as the fundamentalist view. There is a book by an atheistic philosopher who believes strongly,I say this because I have read one of his articles, that ID needs study and is a valid approach: - http://www.amazon.com/gp/product/1551118637?ie=UTF8&tag=accessresearc-20&linkCo... - On the lighter side, how about a little musical Darwin by Prof. Milner - http://video.nytimes.com/video/2009/02/09/science/1231547271297/darwin-in-song.html - Give it time to load. I have DSL and that was slow.

Evolution

by dhw, Friday, July 24, 2009, 07:57 (5397 days ago) @ David Turell

The Theory of Evolution is not a single idea, and we've already seen on this forum that many misunderstandings arise because we don't always differentiate between its component parts. I therefore thought it might be useful to provide a summary of the salient points that are generally accepted or are in dispute. - 1) The Theory of Evolution does not deal with the origin of life.
2) The earliest forms of life are presumed to have been self-replicating molecules.
3) These molecules were able to undergo change and to reproduce the changes.
4) Changes can occur through random mutation, random combination, and the outside influence of the environment.
5) Beneficial changes survive through natural selection. - 1), 2) and 3) raise the problem of Chance v. Design. Do we or do we not believe that the complexities of the original mechanism could fashion themselves spontaneously? - 4) and 5) raise the question of whether new species evolve step by step (phyletic gradualism) or come into being suddenly (punctuated equilibrium). This is also an issue with regard to complex new organs and systems (e.g. the change from asexual to sexual reproduction), and provides further material for the Chance v. Design debate. - It is possible to accept some individual components of the theory while questioning others. - The theory is compatible with Theism but not with Creationism. - One further discussion point is whether evolution is or is not purposeful (teleology). - This summary is simply an attempt to clarify the lines of argument, but please feel free to correct and/or supplement it.

Evolution

by xeno6696 @, Sonoran Desert, Saturday, July 25, 2009, 17:22 (5396 days ago) @ dhw

dhw, - Good post here. As usual I would like to be a nitpicker in regards to your creationism and theism statement. - I would still qualify that evolution is only compatible with certain kinds of theism... you appear to make a false distinction between theism and creationism. Creationism is a subset of theism, because it can only exist with a corresponding theistic perspective. The distinction you make here would mean that creationists wouldn't have to be theists. It is better to divide theism into the three camps of creation, design, and my extreme deism. (Don't know what else to call it.) After that extreme deistic perspective you have a middle circle corresponding to agnosticism and finally the complete rejection of all theism. - As someone who's presently mired in turn of the century german philosophy (Nietzsche, Wittgenstein, Heideggar, etc.) I have a hard time finding telelogical principles in anything but that which humans themselves have created. But it is teleology that is most informative on what we've been discussing.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by dhw, Sunday, July 26, 2009, 22:54 (5395 days ago) @ xeno6696

Matt objects to one point in my summary of the Theory of Evolution: "I would still qualify that evolution is only compatible with certain kinds of theism...you appear to make a false distinction between theism and creationism." - Thank you. I think this is a valid criticism, but I don't like your alternative "three camps of creation, design, and my extreme deism". How about: The theory is compatible with belief in a conscious designer, but is not compatible with literal interpretations of the Bible? - A very minor matter: in your post of 24 July at 00.09 you wrote: "...if religion is taken by its root words "relig aire". (To fashion together.)" Just to set the record straight, the derivation of the word 'religion' is ... rather appropriately ... uncertain, but there seems to be general agreement that it goes back to the Latin 'religare'. 'Ligare' = to bind, not to fashion, and a possible explanation is that the term entails binding humans to God (e.g. through an oath). I haven't heard your version before, and don't know where your "aire" comes from, but it's certainly more evocative (and sceptical) than the derivation I know!

Evolution

by xeno6696 @, Sonoran Desert, Monday, July 27, 2009, 05:05 (5394 days ago) @ dhw

Matt objects to one point in my summary of the Theory of Evolution: "I would still qualify that evolution is only compatible with certain kinds of theism...you appear to make a false distinction between theism and creationism."
> 
> Thank you. I think this is a valid criticism, but I don't like your alternative "three camps of creation, design, and my extreme deism". How about: The theory is compatible with belief in a conscious designer, but is not compatible with literal interpretations of the Bible? 
> 
Strictly speaking, no. Because its not just the Bible, it's also the Quran, Talmud, literal and dogmatic traditions anywhere that assert some form of creationism. - I know you dislike the theistic connotations of a conscious designer, but they are inescapable. As I argue with my atheist friends, it is entirely possible that every idea we've ever come up with about God is completely false except that he exists. Still doesn't stop the being from being classified as a deity unless he/she/it is as material as we are. - 
> A very minor matter: in your post of 24 July at 00.09 you wrote: "...if religion is taken by its root words "relig aire". (To fashion together.)" Just to set the record straight, the derivation of the word 'religion' is ... rather appropriately ... uncertain, but there seems to be general agreement that it goes back to the Latin 'religare'. 'Ligare' = to bind, not to fashion, and a possible explanation is that the term entails binding humans to God (e.g. through an oath). I haven't heard your version before, and don't know where your "aire" comes from, but it's certainly more evocative (and sceptical) than the derivation I know! - I would have to dig to find where I found that derivation. It was not my own concoction. I think it was my human geography textbook... when trying to add Confucianism and Buddhism to the terms "religion" even though they are non-mystical and do not invoke deities. That said, "to bind" in english could be taken to mean "to fashion together" or "to build" so it's not a big stretch. Under the usual definition Buddhism/Confucianism wouldn't apply as religions.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by George Jelliss ⌂ @, Crewe, Saturday, July 25, 2009, 21:53 (5396 days ago) @ dhw

dhw writes: "Do we or do we not believe that the complexities of the original mechanism could fashion themselves spontaneously?" - I do not believe that anything can "fashion itself", in the sense of bringing itself into existence, whether spontaneously or with malice aforethought. Lifting oneself up by the bootstraps is an impossibility. The earliest replicants could be said to have come into being spontaneously (in the sense of "naturally") when all the necessary conditions and components were in place for the reactions to happen. - dhw wrote: "The theory is compatible with Theism ..." - Whether the theory of evolution is compatible with "theism" or not depends on the type of "theos" that you espouse. I would say that it rules out most gods as traditionally conceived, since we need to know how the gods themselves evolved and acquired their powers to intervene in nature.

--
GPJ

Evolution

by David Turell @, Sunday, July 26, 2009, 21:27 (5395 days ago) @ George Jelliss

I do not believe that anything can "fashion itself", in the sense of bringing itself into existence..... The earliest replicants could be said to have come into being spontaneously (in the sense of "naturally") when all the necessary conditions and components were in place for the reactions to happen.
 
> Whether the theory of evolution is compatible with "theism" or not depends on the type of "theos" that you espouse. - I agree with these statements. We have no idea how life started, but a chance arrangement of conditions and components, against enormous odds, cannot be denied. And I think my brand of panentheism is compatable with evolution. What monotheistic religions have developed is an anthropomorphic 'theos'. Folks like Francis Collins invent their brand of process theism (process evolution) in an attempt to bring science and a fundamental religion together, and in my mind it is a failure.

Evolution

by xeno6696 @, Sonoran Desert, Monday, July 27, 2009, 18:04 (5394 days ago) @ David Turell

I do not believe that anything can "fashion itself", in the sense of bringing itself into existence..... The earliest replicants could be said to have come into being spontaneously (in the sense of "naturally") when all the necessary conditions and components were in place for the reactions to happen.
> 
> > Whether the theory of evolution is compatible with "theism" or not depends on the type of "theos" that you espouse.
> 
> I agree with these statements. We have no idea how life started, but a chance arrangement of conditions and components, against enormous odds, cannot be denied. And I think my brand of panentheism is compatable with evolution. What monotheistic religions have developed is an anthropomorphic 'theos'. Folks like Francis Collins invent their brand of process theism (process evolution) in an attempt to bring science and a fundamental religion together, and in my mind it is a failure. - It might be a failure but in all honesty if we could get more theistic scientists I think we could reverse some of the trend in the U.S. where now only 30% accept evolution. Nietzsche's epithet "God is dead" is in the fact that the greek religions would modify their mythos to accommodate new inquiry and investigation. Limits on a God weren't so strange. We need the dogmatic in our society to start rewriting and reinterpreting their books, people like Collins are absolutely intrinsic to such an event. So even if it is a logical failure we should promote it.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by dhw, Sunday, July 26, 2009, 23:04 (5394 days ago) @ George Jelliss

In my attempt to summarize the component parts and the disputed areas of the Theory of Evolution, I asked if we did or did not believe that "the complexities of the original mechanism could fashion themselves spontaneously". George objects to "fashion", and would like "spontaneously" to mean "naturally". I'm quite happy to change fashion (never my strong point!), but am not willing to equate spontaneously with naturally, as the latter makes it all sound far too easy! I suggest: Do we or do we not believe that the complexities of the original mechanism could come about without the active participation of an external intelligence? - I wrote that the theory was compatible with Theism.
George: I would say that it rules out most gods as traditionally conceived, since we need to know how the gods themselves evolved and acquired their powers to intervene in nature. - No we don't. You have taken us back to Square One instead of Square Two. My first item, to which you did not object, was: "The Theory of Evolution does not deal with the origin of life". We both agree that there was a starting point to life on Earth. Neither of us knows how it happened. Once life had begun, we both believe it underwent a process of evolution. Whether life was the product of chance or of divine intervention makes no difference whatsoever to your acceptance or mine of the theory. How the gods came into existence is therefore no more relevant to the Theory of Evolution than how life came into existence. - It may be worth mentioning that in a letter written in 1879, Darwin wrote that one "can be an ardent Theist and an evolutionist". Not a bad man to have in support of my argument.

Evolution

by George Jelliss ⌂ @, Crewe, Monday, July 27, 2009, 18:56 (5394 days ago) @ dhw

dhw: "I suggest: Do we or do we not believe that the complexities of the original mechanism could come about without the active participation of an external intelligence?" - You know quite well that my view is that it did come about without the participation of an external intelligence. - dhw: "My first item, to which you did not object, was: "The Theory of Evolution does not deal with the origin of life". We both agree that there was a starting point to life on Earth. Neither of us knows how it happened. Once life had begun, we both believe it underwent a process of evolution." - I didn't object nor did I agree. I didn't comment. But in fact I agree with your statement here, so far. Although I would say I do have an inkling of "how it happened", though not in precise detail. I don't think a god magicked it into existence. - dhw: "Whether life was the product of chance or of divine intervention makes no difference whatsoever to your acceptance or mine of the theory. How the gods came into existence is therefore no more relevant to the Theory of Evolution than how life came into existence." - With this I must disagree. The question is what do you mean by "life"? Is "divine intervention" possible by non-living entities? Are gods dead things? I know Nietsche claimed gods were dead, but I think he meant they were once alive. - dhw: "It may be worth mentioning that in a letter written in 1879, Darwin wrote that one "can be an ardent Theist and an evolutionist". Not a bad man to have in support of my argument." - Yes, and Francis Collins among others proves his case. But we know people are capable of believing mutually contradictory ideas. How they do it is a bit baffling, but that's another question.

--
GPJ

Evolution

by xeno6696 @, Sonoran Desert, Monday, July 27, 2009, 22:58 (5394 days ago) @ George Jelliss

George,
> With this I must disagree. The question is what do you mean by "life"? Is "divine intervention" possible by non-living entities? Are gods dead things? I know Nietsche claimed gods were dead, but I think he meant they were once alive.
> - It is a helluva lot more complicated than that. Nietzsche's main focus is in establishing that mankind has killed god (as god was a dogmatic structure--but he certainly doesn't posit that god was actually real) and Nietzsche recognized that spirituality (of some kind) is inherent in Man's search for meaning. So if we killed all the gods, what are we supposed to do? The Greeks gave us both mythos and logos, Nietzsche wanted to replace mysticism with yet another mysticism, in a great way that is exactly what the summa of his work amounts to. He doesn't give us a system per se but the means with which to think about creating our own. Each of us is a metaphysician and must forge a way for both parts of the human experience to be reconciled, both internal and external. But religion has been removed from our epistemology for good, which I've more or less discussed in various places here. - So the death of God has nothing to do with god himself, but what philosophy should do since it can no longer posit God as the source of knowledge. Side issues here of note are nihilism and the eternal recurrence.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by George Jelliss ⌂ @, Crewe, Tuesday, July 28, 2009, 09:45 (5393 days ago) @ xeno6696

Yes. I know all that. My comment about Nietsche was just a facetious little joke, not intended to be taken serious in that way! If it's going to divert the discussion, I'm sorry I put it in. - The point at issue here is that "explaining" life-as-we-know-it in terms of creation or design by gods, or any other pre-existing living entities, is not a real explanation of the origin of life, since it already presupposes the existence of life.

--
GPJ

Evolution

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 14:29 (5393 days ago) @ George Jelliss

George,
> Yes. I know all that. My comment about Nietsche was just a facetious little joke, not intended to be taken serious in that way! If it's going to divert the discussion, I'm sorry I put it in.
> - Sorry, I'm used to people misusing that N quote. All the time. It was a knee-jerk. I won't do it again with you. - > The point at issue here is that "explaining" life-as-we-know-it in terms of creation or design by gods, or any other pre-existing living entities, is not a real explanation of the origin of life, since it already presupposes the existence of life. - Ah... begging the question. I hadn't really brought that up, but I'll be very interested to what Dr. Turell says to that. It rephrases (in plain english) my challenge that a creator doesn't really explain anything...

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by dhw, Tuesday, July 28, 2009, 16:06 (5393 days ago) @ George Jelliss

Revised Item 1 in my list of topics in dispute: "Do we or do we not believe that the complexities of the original mechanism could come about without the active participation of an external intelligence?"
George: You know quite well that my view is that it did come about without the participation of an external intelligence. - The purpose of my summary was to provide a neutral framework that might prevent some of the misunderstandings that have plagued this discussion. The above question was not addressed to you personally, George, but is part of a list comprising the different components of the theory, and the different points that are in dispute. I had to put it in, but already it's led us away from evolution and back to abiogenesis, so I have failed miserably in my self-imposed task! However, I'll try to deal with your next point, as it illustrates the difficulties we are encountering on this thread, which is becoming increasingly diffuse. - George: "Is "divine intervention" possible by non-living entities? Are gods dead things?" - These are important questions in relation to a discussion on the origin of life and the problems relating to the design theory, but they are not related to the item on my list that you objected to, which initially read: "The theory is compatible with Theism..."*** Your disbelief in a conscious designer does not alter the fact that the Theory of Evolution does not deal with the origin of life. There is therefore nothing "mutually contradictory" between believing that a conscious power designed the mechanism which gave rise to evolution, and believing the theory of evolution itself. This describes how the process works, not what started it off. The above questions, like your earlier point about us needing to know how the gods evolved and acquired their powers of intervention (and the one you have made today in your response to Matt), are beyond the scope of Darwin's theory, which he himself said was compatible with Theism. Of course that does not mean that it supports Theism. The theory itself is neutral. - Perhaps we should start another thread on the subject of "Objections to the Design Theory", in order to separate it from disputes about the details of evolution. You wouldn't like to start it off, would you, George? - 
*** Matt (and George), to save another post, how about: The theory is compatible with belief in a conscious designer, but not with the Creationist account of the history of life?

Evolution

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 17:52 (5393 days ago) @ dhw


> *** Matt (and George), to save another post, how about: The theory is compatible with belief in a conscious designer, but not with the Creationist account of the history of life? - From the standpoint of a logician, I can derive your statement from my example of a "continuum" of theistic thought. - On the question of God there are no other alternatives: Belief, mixed belief, suspended belief, complete denial. - Making your statement into more of an axiom doesn't really serve any purpose. It's a well-established proposition, based on that set of axioms I put forth. I'm a systems-builder so in my view anything that can be derived doesn't need to be stated axiomatically. - I *completely* understand that you don't want to be grouped in with creationists, but "conscious designer" is still a euphemism for a God of some kind, be it via panentheism or process philosophy. Not the god of Abraham, mind, but one that challenges creationists on theological grounds. It is still theism, just with an unwritten theology based upon your agnosticism. - I see nothing wrong with this picture at all. I don't know why you care to argue it. - EDITED

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by dhw, Wednesday, July 29, 2009, 08:04 (5392 days ago) @ xeno6696

On Friday 24 July at 07.57, I posted a summary of the salient points of the Theory of Evolution, plus a list of points that are agreed on or are in dispute. As I explained at the time, my object was to try to bring some order to a thread that has become increasingly diffuse (just try to trace all the different arguments) and subject to various misunderstandings. - One of the summarized points of what I thought was agreement read: "The theory is compatible with Theism but not with Creationism." Matt (25 July at 17.22) felt the distinction was not clear enough, as creationists are also theists, and so I have attempted to rephrase it as succinctly as possible. My latest version is: "The theory is compatible with belief in a conscious designer, but not with the Creationist account of the history of life." - Matt: I completely understand that you don't want to be grouped in with creationists, but "conscious designer" is still a euphemism for a God of some kind, be it via panthentheism or process philosophy. Not the God of Abraham, mind, but one that challenges creationists on theological grounds. It is still theism, just with an unwritten theology based upon your agnosticism. I see nothing wrong with this picture at all. I don't know why you care to argue it. - Of course it's a euphemism for a God of some kind. And it's deliberately meant to include, not exclude the God of Abraham. And it has nothing whatsoever to do with my agnosticism, and nothing whatsoever to do with my beliefs or my non-beliefs. And I'm not attempting to write axioms, or to present an argument. This is one item in what was meant to be a neutral list ... an attempt, in answer to your justified criticism of 25 July, to separate creationists, who do not accept the theory, from other theists who do. - However, the summary was clearly a misguided effort, since it has had precisely the opposite effect to what I'd intended. Instead of bringing order to chaos, I have added to the chaos. The "evolution" thread has turned into a Hydra, and it's painfully obvious that the 'h' in dhw does not stand for Hercules!

Evolution

by xeno6696 @, Sonoran Desert, Wednesday, July 29, 2009, 13:07 (5392 days ago) @ dhw

However, the summary was clearly a misguided effort, since it has had precisely the opposite effect to what I'd intended. Instead of bringing order to chaos, I have added to the chaos. The "evolution" thread has turned into a Hydra, and it's painfully obvious that the 'h' in dhw does not stand for Hercules! - hah! Wyrmy jokes! - Well, at least in my case, there's no need to draw that line--I was made painfully aware of that by the gentleman I met last year who adheres to process philosophy. - To be frank, off the top of my head I do not know what started this, but I can promise if its far off course its probably my fault. My brain quite easily jumps from topic to topic. - I think the main point was to draw attention to the major unresolved question within biology. I think it can boil down thus: - 1. Traditional Darwinian evolution, micro changes over time that give rise to novel organisms over geologic time. - 2. "Huxley-an" evolution, who stated that there was no reason to believe that evolution couldn't happen relatively rapidly. (Punctuated Equilibrium would belong here.) - The key here is that we know that speciation *can* happen in short geologic time, and it may not be simply a function for how many generations a species can produce in that time frame. - Though how these questions work to resolve our greater issue, I am presently at a loss.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Wednesday, July 29, 2009, 14:52 (5392 days ago) @ xeno6696

1. Traditional Darwinian evolution, micro changes over time that give rise to novel organisms over geologic time. - Is this the start of the opposable thumb? A new fossil: - 
http://www.sciencedaily.com/releases/2009/07/090728201732.htm

Evolution

by David Turell @, Wednesday, July 29, 2009, 20:17 (5392 days ago) @ David Turell

From Nature, two articles demonstrating how micro RNA controls development of the nervous system pathways, and also control supression of extra X chromosomes since only one X should be in control. - http://www.nature.com/nature/journal/v460/n7255/edsumm/e090730-13.html - http://www.nature.com/nature/journal/v460/n7255/edsumm/e090730-12.html

Evolution

by David Turell @, Thursday, July 30, 2009, 14:53 (5391 days ago) @ David Turell

1. Traditional Darwinian evolution, micro changes over time that give rise to novel organisms over geologic time. - 
Another study to show microevolution, color change in a bird species: - http://www.sciencedaily.com/releases/2009/07/090714104000.htm

Evolution

by xeno6696 @, Sonoran Desert, Friday, July 31, 2009, 03:38 (5390 days ago) @ David Turell

1. Traditional Darwinian evolution, micro changes over time that give rise to novel organisms over geologic time.
> 
> 
> Another study to show microevolution, color change in a bird species:
> 
> http://www.sciencedaily.com/releases/2009/07/090714104000.htm - But here's a key question, how many of those changes would it take before you would be willing to call it a new species? Part of my own confusion about your evolutionary distinctions hinges on that. - Actually, what is your definition of micro and macroevolution... because I picked up Pigliucci's book again (for his refutation of "science as a meta-narrative") and came across what he called a common confusion between micro and macro. Biologists call microevolution anything that can be studied by population genetics and molecular biology, and macroevolution to what is studied by paleontology and anthropology. I'd have to read the book again to see what he says regarding the validity of Darwin v. Huxley but I remember him considering the question a non-issue.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Friday, July 31, 2009, 16:30 (5390 days ago) @ xeno6696

But here's a key question, how many of those changes would it take before you would be willing to call it a new species? Part of my own confusion about your evolutionary distinctions hinges on that. 
> 
> Actually, what is your definition of micro and macroevolution... because I picked up Pigliucci's book again - If you look at Wiki micro is at the species level and macro above that. In my Webster Collegiate that approach is generally supported. Micro is small changes within species, leading to evolutionary changes, and macro is more complex changes within evolution. Pigliucci's definitions are his, and perhaps not mine. What matter? You and I will discuss evolution and use our own individual terms, which we should understand for each other. How many changes for a new species (?); we have covered before. There is no fine line as previously pointed out, and until we have DNA studies on everything, those inexact lines will remain. Remember Gould told us there is an extreme paucity of transitional fossils. Not yet found or never present? We do not know. (Sci Am, Oct, '94)Or 'One species may appear to be descended from another, but the fossil record does not show how one evolved into another.' (The Evolutionists, the Struggle for Darwin's Soul, 2001)

Evolution

by David Turell @, Friday, July 31, 2009, 20:08 (5390 days ago) @ David Turell

Or 'One species may appear to be descended from another, but the fossil record does not show how one evolved into another.' (The Evolutionists, the Struggle for Darwin's Soul, 2001) - Forgot to give the author: Not an ID guy, Richard Morris.

Evolution

by David Turell @, Saturday, August 01, 2009, 14:53 (5389 days ago) @ David Turell

Working on dinosaur bones, and finding protein, looking at peptide fragments now in two fossils: - http://sciencenow.sciencemag.org/cgi/content/full/2009/731/1 - Jurassic Park, anyone?

Evolution

by David Turell @, Wednesday, August 05, 2009, 14:32 (5385 days ago) @ David Turell

In the past I have mentioned feedback loops as a method for living cells to control processes. This study describes molecular switches which modulate chemical processes in cells. - http://www.sciencedaily.com/releases/2009/08/090803185838.htm - Note how the size of a majority 'vote' can finely tune the process.

Evolution

by David Turell @, Thursday, August 06, 2009, 14:43 (5384 days ago) @ David Turell
edited by unknown, Thursday, August 06, 2009, 14:51

Is there life elsewhere in the universe, or in the solar system? Methane on Mars suggests life, but: - http://sciencenow.sciencemag.org/cgi/content/full/2009/805/2 - 
And on a much lighter note: - http://www.newscientist.com/special/ten-mysteries-of-you - But I have watched my dogs dreaming, leg movements and soft barks while sleeping.

Evolution

by David Turell @, Thursday, August 06, 2009, 14:57 (5384 days ago) @ David Turell

Is there life elsewhere in the universe, or in the solar system? Methane on Mars suggests life, but: 
> 
> http://sciencenow.sciencemag.org/cgi/content/full/2009/805/2
> 
> 
> And on a much lighter note:
> 
> http://www.newscientist.com/special/ten-mysteries-of-you
> 
> But I have watched my dogs dreaming, leg movements and soft barks while sleeping. - And to explains the brain's plasticity: - http://www.sciencedaily.com/releases/2009/08/090805133013.htm

Evolution

by David Turell @, Friday, August 07, 2009, 14:38 (5383 days ago) @ David Turell
edited by unknown, Friday, August 07, 2009, 14:50

An interesting essay on the arrival of a nucleus in cells, a major advance over bacteria, for instance, with no nucleus. A nucleus is needed for sex to appear: - http://www.sciencemag.org/cgi/content/summary/325/5941/666?sa_campaign=Email/toc/7-Augu... - Please note the usual problem: no transitional forms. - Read 'false alarm', 'zombies' and 'out of order' to see tricks of nature and brain development in evolution: - http://sciencenow.sciencemag.org/science-shots/

Evolution

by David Turell @, Saturday, August 08, 2009, 14:20 (5382 days ago) @ David Turell
edited by unknown, Saturday, August 08, 2009, 14:45

David Raup's book 'Extinction' thought it was mostly bad luck. this research suggests some extinctions are in the genes: - http://sciencenow.sciencemag.org/cgi/content/full/2009/807/1 - The following article should be enjoyed by John and George: intelligence and free-floating imagination in the lab put us on the way to solving the problem of the code of life: - http://www.physorg.com/news168875229.html

Evolution

by George Jelliss ⌂ @, Crewe, Saturday, August 08, 2009, 19:28 (5382 days ago) @ David Turell

DT wrote: "The following article should be enjoyed by John and George: ... " - http://www.physorg.com/news168875229.html - I'd have thought this was more of interest to dhw: - "... the work nonetheless brings us one step closer to understanding how Life first began."

--
GPJ

Evolution

by David Turell @, Sunday, August 09, 2009, 14:59 (5381 days ago) @ George Jelliss
edited by unknown, Sunday, August 09, 2009, 15:14

DT wrote: "The following article should be enjoyed by John and George: ... "
> 
> http://www.physorg.com/news168875229.html
> - > 
> "... the work nonetheless brings us one step closer to understanding how Life first began." - NO it doesn't! At least the author should have said,'might have begun'. - I should be lots more direct: The article proves 'nothing'. The chemistry, guided by human intelligence, starts far down the road from a simple inorganic/organic beginning of a spontaneous process to start an origin-of-life scenario. Further we were not there at the time the true process began (3.8 billion years ago). Any re-creation that is accepted as THE process is only an assumed re-creation. There well may be more than one way to do this, or only one way. We do not know. - If you travel to Banff Canada you can tour to the Burgess Shale and see it from a distance at Emerald Lake, and if you look down at rocks you are walking on, trilobites will pop up at Moraine Lake. This article shows how difficult it is to analyze fossils and figure out exactly how they lived and ate. - http://www.nature.com/news/2009/090807/full/news.2009.811.html

Evolution

by David Turell @, Sunday, August 09, 2009, 16:59 (5381 days ago) @ David Turell

Another very interesting study of how DNA copying works. Note how huge the folded protein molecules are that are doing the copy checking work: - http://www.sciencedaily.com/releases/2009/07/090730141603.htm

Evolution

by David Turell @, Tuesday, August 11, 2009, 14:30 (5379 days ago) @ David Turell

We still do not know our direct ancestor from about 7 mya. Our DNA is closest to chimps and bonobos, but at the split, who was that? - http://www.physorg.com/news169137362.html

Evolution

by David Turell @, Saturday, August 15, 2009, 14:20 (5375 days ago) @ David Turell
edited by unknown, Saturday, August 15, 2009, 14:52

There are some amazing interactions between parasite and host. Ih this case the parasite wins: - http://www.sciencedaily.com/releases/2009/08/090811161345.htm - Think about this study: 1) One of the biggest jumps in evolution was the development of the nerve cell, the abillity of living animal material to produce ions that would travel along branches of the cell and impart information that created an activity. 2) Fungi are among early forms of plants. No nerve cells as such. 2) How did a simple fungus learn to control an ant brain, which is of itself a tiny living computer made up of nerve cells? 3) A spore somehow gets into a crevice in the ant, and like a plant seed starts to grow. Back in the first step toward evolution of this amazing series of events what happened next? And why would it happen? Why did a brainless spore decide to branch to the ant brain the first time, and then figure out a chemical protein molecule or series of molecules to direct the brain to a very complex action. If anything looks like Behe's 'irreducable complexity' this does. Just-so story, anyone?

Evolution

by George Jelliss ⌂ @, Crewe, Sunday, August 16, 2009, 17:03 (5374 days ago) @ David Turell

If this was designed I don't think I want to meet the designer! - I sent the URL to RD.net to see what they think about it over there. - As to things without a nervous system affecting an animal with a nervous system, surely there are plenty of examples, such as flu viruses or worse (sleeping sickness?).

--
GPJ

Evolution

by David Turell @, Sunday, August 16, 2009, 22:24 (5374 days ago) @ George Jelliss

As to things without a nervous system affecting an animal with a nervous system, surely there are plenty of examples, such as flu viruses or worse (sleeping sickness?). - These viruses are causing inflamation. That fungus is directing a brain to do a variety of what are ordinary voluntary activities. To me that is amazing. Does the fungus develop neurotransmitters and use them?

Evolution

by David Turell @, Thursday, August 20, 2009, 01:56 (5370 days ago) @ David Turell

The group might be interested in this blog about the Burgess Shale, at 100 years from discovery. - http://blogs.nature.com/news/blog/conference_reports/burgess_shale_centenary/

Evolution

by David Turell @, Thursday, August 20, 2009, 14:43 (5370 days ago) @ David Turell

How did most of our earth's oxygen appear? It's been known for some time that cyanobacteria made it by photosynthesis. How they came to do it is shown in this article which proposes that two different bacteria combined themselves, one into the other: - http://www.physorg.com/news169907476.html

Evolution

by David Turell @, Saturday, August 22, 2009, 15:02 (5368 days ago) @ David Turell

I have mentioned Ediacaran organisms in the past as one group that preceded the amazing Cambrian Explosion. And I noted that these organisms were quite simple in comparison. - Here is an article that shows them and proposes how they fed. - http://www.sciencedaily.com/releases/2009/08/090819113447.htm

Evolution

by David Turell @, Sunday, August 23, 2009, 01:45 (5367 days ago) @ David Turell

I would read the following summary and author's interpretation very carefully. The study describes mutation and gene substitution changes that are present in humans as compared to chimps and macaques. There are accelerated regions of change in humans (HAR's) where substitutions are much faster than the average throughout the genome. What causes these areas to be preferred? The answer is unknown, but the author suggests he thinks it is due to deleterious mutations being selected for those spots. What? Now you can see why I think Neo-Darwinism is not working very well as a theory. - http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000026

Evolution

by David Turell @, Monday, August 31, 2009, 14:35 (5359 days ago) @ David Turell
edited by unknown, Monday, August 31, 2009, 14:45

We need oxygen, and photosynthesis in plants supplies it. But so do a group of viruses. It is amazing how things evolve:-
http://www.newscientist.com/article/mg20327235.000-photosynthetic-viruses-keep-worlds-oxygen-levels-up.html-And in the amazing category is sensory perception, when eyes are of little use or not present at all. Sensing an enemy or prey:-http://www.sciencedaily.com/releases/2009/08/090828103932.htm

Evolution

by George Jelliss ⌂ @, Crewe, Tuesday, July 28, 2009, 20:17 (5393 days ago) @ dhw

dhw has invited me to "start another thread on the subject of "Objections to the Design Theory", in order to separate it from disputes about the details of evolution." - Personally I am happy to leave disputation on details of biological evolution to the biologists, since it is a very technical subject, and much of it seems to me to be rather arcane, like "punctuated equilibrium" and "group selection" and "emergence", although I know that those who want to bring theology into the subject like to play up these disagreements. - I don't think there is such a thing as "The Design Theory" in any scientific sense, so I won't be starting a thread with that title. - dhw claims: "... the Theory of Evolution does not deal with the origin of life." - In my opinion "the theory of evolution" in its modern sense must include the origin of life as well as its development. It seems to me that dhw is trying to make a rather artificial distinction here, or perhaps trying to put back the clock to Darwin's time. The theory has moved on since Darwin. It is no longer Darwinism. It is Crick and Watson-ism now, and much more. It is molecular biology. - dhw continues: "There is therefore nothing "mutually contradictory" between believing that a conscious power designed the mechanism which gave rise to evolution, and believing the theory of evolution itself." - The phrase "the mechanism which gave rise to evolution" is ambiguous. It could mean "the way in which molecules first came together to produce self-replication in a molecular syatem" or it could refer to "the processes of variation and natural selection". The modern theory of the evolution of life (i.e. its origin and development) does not require any input by a conscious designer. In fact since a conscious designer would be a life-form, such a hypothesis entirely undermines the theory by assuming that life already existed before life evolved. - dhw says: "the theory is neutral" - Maybe it was when Darwin stated it. That is no longer the case.

--
GPJ

Evolution

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 21:56 (5393 days ago) @ George Jelliss

George, - Why do you think that evolution requires an explanation of the origin of life? A book I talk about a few times here, written by an evolutionary biologist (Massimo Pigliucci) flatly denies this. Evolution can only explain life, in the view of evolutionary biology. Therefore evolution does not require a theory of genesis in order to explain life.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Tuesday, July 28, 2009, 22:38 (5393 days ago) @ xeno6696

George,
> 
> Why do you think that evolution requires an explanation of the origin of life? - I agree absolutely. Origin of life study may require a change from simple inorganic chemistry to complex organic, but molecules do not compete in natural selection. Molecules are passive. Happenstance will bring them to bond in inorganic chemistry, but it takes enzymes in organic chemistry to drive organic molecules to interact. Darwin theory starts when life appears.

Evolution

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 23:58 (5392 days ago) @ David Turell

George,
> > 
> > Why do you think that evolution requires an explanation of the origin of life? 
> 
> I agree absolutely. Origin of life study may require a change from simple inorganic chemistry to complex organic, but molecules do not compete in natural selection. Molecules are passive. Happenstance will bring them to bond in inorganic chemistry, but it takes enzymes in organic chemistry to drive organic molecules to interact. Darwin theory starts when life appears. - Hmm... technically couldn't you make the argument that molecules DO compete with each other? Predator-prey arms races would make a good case for two competing DNA molecules.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Wednesday, July 29, 2009, 01:22 (5392 days ago) @ xeno6696


> Hmm... technically couldn't you make the argument that molecules DO compete with each other? Predator-prey arms races would make a good case for two competing DNA molecules. - You have too much imagination. With RNA as cavalry???

Evolution

by David Turell @, Sunday, July 26, 2009, 21:46 (5395 days ago) @ dhw

One further discussion point is whether evolution is or is not purposeful (teleology). - Evolution certainly looks purposeful in the sense that it continuously changes toward the more complex. Complexity does not guarantee survivability, the key to natural selection. Gould in 'Full House' defends this by first pointing out that the only direction for random mutations is away from bacteria (one-celled animals or plants) to something more complex. (My feeling is why should bacteria became more complex; they have been successful as they are for 3.6 billion years? That supports the idea there is a drive to complexity in the evolutionary process.) For randomness Gould points out the 'drunkard's walk' and 'random walk' math to match random mutation. This certainly supports all the various banches of evolution in plants and animals. But the drunk has a purpose. He is trying to get home, and the odds are with him to a degree that he will get to his front door. - But if one looks at a diagram of random walk, the path can circle around, back up on itself. To me evolution doesn't seem to do that. How often are branches found that circle back to become less complex? - So I am not sure that Gould has really clearly removed teleology from evolution.
I hope our resident math expert, Matt, would comment.

Evolution

by David Turell @, Monday, July 27, 2009, 14:48 (5394 days ago) @ David Turell

One further discussion point is whether evolution is or is not purposeful (teleology).
 
> Evolution certainly looks purposeful in the sense that it continuously changes toward the more complex. - Here is an example where evolution might have paused, but did not move backward. Does this tree have vestigial parts? Our appendix was promoted the same way, but it is now shown it is useful as it has an immunity function. In the article is a picture of a Moa. Gould discusses in 'Full House' the observation that over time species tend to grow larger. - http://sciencenow.sciencemag.org/cgi/content/full/2009/724/1

Evolution

by xeno6696 @, Sonoran Desert, Monday, July 27, 2009, 23:25 (5393 days ago) @ David Turell

One further discussion point is whether evolution is or is not purposeful (teleology).
> 
> Evolution certainly looks purposeful in the sense that it continuously changes toward the more complex. Complexity does not guarantee survivability, the key to natural selection. Gould in 'Full House' defends this by first pointing out that the only direction for random mutations is away from bacteria (one-celled animals or plants) to something more complex. (My feeling is why should bacteria became more complex; they have been successful as they are for 3.6 billion years? That supports the idea there is a drive to complexity in the evolutionary process.) For randomness Gould points out the 'drunkard's walk' and 'random walk' math to match random mutation. This certainly supports all the various banches of evolution in plants and animals. But the drunk has a purpose. He is trying to get home, and the odds are with him to a degree that he will get to his front door.
> 
> But if one looks at a diagram of random walk, the path can circle around, back up on itself. To me evolution doesn't seem to do that. How often are branches found that circle back to become less complex? 
> 
> So I am not sure that Gould has really clearly removed teleology from evolution.
> I hope our resident math expert, Matt, would comment. - Not sure what I can really offer here... I'm not that familiar with Gould's argument, and the random walks I'm used to are for things like maze solutions. I certainly haven't taken a course that does more than a few basic algorithms... - Taking a peek at some theorems that might shed some light, it looks like the "random walk hypothesis" from economics might shed the most light. Economics are often used in biological studies and evolutionary simulations usually are mathematically based on economics. (Especially consumption and any game-theory type competition.) - http://en.wikipedia.org/wiki/Random_Walk_Hypothesis - Using this as a rough analogy, I would assume that Turell would view the "random graph" as what he's talking about here, if complexity is charted on the y-axis and time on the x-axis, you would theoretically have instances where an organism would "de-evolve" as it were. But what exactly would "de-evolution" be? As the oceans acidify, coral will start to lose its skeletons. If an agressive form of coral manages to find a way to beat that, is that evolution or de-evolution? Bacterial evolution has been observed by deleting a gene (such as lactose edibility) and watching as a new gene (crafted from an older one) was created to metabolize lactose. I know selection has been working on North Atlantic Cod to make them small. Could this be de-evolution? I think the random walk thing would be in the tracing of a specific trait... and holy crap would that be complex if the trait was primarily biochemical in nature that was only active in certain conditions. - I'd need to know more about Gould's context because I certainly doubt he'd make an error that I'd pick up on. I need more problem info... - I would say that the trend towards complexity has a very simple answer: Since natural selection conserves traits necessary for survival it makes sense that a genome is primarily additive in nature. I'm sure Dr. Turell will lance this conjecture in the arse.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Tuesday, July 28, 2009, 01:22 (5393 days ago) @ xeno6696

One further discussion point is whether evolution is or is not purposeful (teleology).
 
> > So I am not sure that Gould has really clearly removed teleology from evolution.
 
> http://en.wikipedia.org/wiki/Random_Walk_Hypothesis - I don't disagree with you, Matt. I looked at the Wiki graphs. My point is as preserved above. Doesn't random walk have a purposeful end point? Teleology?

Evolution

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 05:37 (5393 days ago) @ David Turell

One further discussion point is whether evolution is or is not purposeful (teleology).
> 
> > > So I am not sure that Gould has really clearly removed teleology from evolution.
> 
> > http://en.wikipedia.org/wiki/Random_Walk_Hypothesis
> 
> I don't disagree with you, Matt. I looked at the Wiki graphs. My point is as preserved above. Doesn't random walk have a purposeful end point? Teleology? - Purposeful endpoint? Hate to sound postmodern, but that's entirely dependent upon what it is that you're graphing. Considering that stock market graphs also appear to be useful in describing some biological phenomenon, I would hesitate to say that there is any general purpose at all... - From what I know about the mathematics of economics, this is what I think Gould had in mind: - If you think about it organisms use energy as currency just as we use money. If there's any "purpose" to evolution it is definitely tied to chemical energy, and although economies do slowly diversify and build, they do not have an intrinsic purpose, only their own individual purposes that create an emergent phenomenon called the marketplace. (In biology its called the ecosystem, each biome a "stock exchange" as it were.) - I see in economics a human recreation of the entire system of evolution. Each individual person (in the stock market) and the companies (at large) are working to amass "the most." (energy) Individual units (people & companies) simply further their own ends. The same for creatures at large in their ecosystems. Historically, you are correct that there is a tendency for larger creatures, but our generation will be the last to see elephants, kodiaks, and polar bears in the wild. The coming climate change will cause a tremendous shift towards "noncomplexity" as it were. The coming shift will be the bulge of the mass extinction brought about by yours truly, and all my ancestors. We'll call it an "ecological downturn." - The downshifts in complexity happen when ecological balances are fundamentally changed. (shocks to the stock market) When there's a mass extinction, it's typically the largest that will go first, because they require the most energy to maintain. - If you look on the picture in THAT light you see a large MACRO shift in complexity (akin to an economic downturn), but as you see, no overall purpose. (At least, none that we can discern.) There is no purpose to the stock market, and to carry the analogy forward, none in evolution. This is as good as a recreation to what I think a "random walk" that Gould would be referencing. I have no clue how close I am to his argument...

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Tuesday, July 28, 2009, 16:48 (5393 days ago) @ xeno6696

Purposeful endpoint? Hate to sound postmodern, but that's entirely dependent upon what it is that you're graphing. - > This is as good as a recreation to what I think a "random walk" that Gould would be referencing. I have no clue how close I am to his argument... - I think you have helped. Gould used a drunkard's walk to start his chapter. That example has teleology; the drunk wants to get home. But Gould's overall purpose was to say most random walks in evolution have no purpose. He didn't think through the implications of his first example. I have always admired his writing ability. I wish I could handle words so well. - Gould wrote with an underlying bias. He profoundly believed in the contingency of random mutation. He said humans were a 'glorious accident'. He used the Burgess Shale in Wonderful Life to drive that point home. The Shale had one protovertibrate, Pikaia (a fish). In his view that was the one lucky break to get to us. He wrote too soon. In the recent work in China shales at least 3-4 other fish have been found, obviously different species. So much for contingency. When evolution explodes, it obviously explodes in several branches at the same level with several species. This is Conway Morris' theory of convergence, which wins the day. Humans are not contingent, which leads me to suspect that the directionality of evolution to the more complex is built into DNA/RNA. And so I have brought the discussion back to teleology.

Evolution

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 20:03 (5393 days ago) @ David Turell

Purposeful endpoint? Hate to sound postmodern, but that&apos;s entirely dependent upon what it is that you&apos;re graphing. &#13;&#10;> &#13;&#10;> > This is as good as a recreation to what I think a &quot;random walk&quot; that Gould would be referencing. I have no clue how close I am to his argument...&#13;&#10;> &#13;&#10;> I think you have helped. Gould used a drunkard&apos;s walk to start his chapter. That example has teleology; the drunk wants to get home. But Gould&apos;s overall purpose was to say most random walks in evolution have no purpose. He didn&apos;t think through the implications of his first example. I have always admired his writing ability. I wish I could handle words so well.&#13;&#10;> &#13;&#10;> Gould wrote with an underlying bias. He profoundly believed in the contingency of random mutation. He said humans were a &apos;glorious accident&apos;. He used the Burgess Shale in Wonderful Life to drive that point home. The Shale had one protovertibrate, Pikaia (a fish). In his view that was the one lucky break to get to us. He wrote too soon. In the recent work in China shales at least 3-4 other fish have been found, obviously different species. So much for contingency. When evolution explodes, it obviously explodes in several branches at the same level with several species. This is Conway Morris&apos; theory of convergence, which wins the day. Humans are not contingent, which leads me to suspect that the directionality of evolution to the more complex is built into DNA/RNA. And so I have brought the discussion back to teleology. - You have... but I&apos;ll need some insight to continue... - In my perspective, the tendency for DNA/RNA is to conserve information. I did take some things with my from my time in biochem labs, specifically types of errors that are introduced into the code that don&apos;t damage the organism. Any uncaught change in DNA/RNA that isn&apos;t deleterious will simply be conserved and passed on. It is a machine of accretion. Claiming any kind of a teleology when the most recognizable process (economics) also has no purpose, is a rather difficult proposition. I see no reason that the economics analogy cannot also apply to the genome, and I think it presents a real challenge to the idea of a teleology. There is no end goal to the economy, all the economy is, is a graphing of the wealth of a nation. To me, graphing the complexity of life simply shows an accretion of genetic &quot;wealth&quot; over time when looking at all organisms. There is no holistic point to it. At least I can&apos;t fathom one. Each individual in an economy or a genome in life simply tries to &quot;stay alive,&quot; as it were. - I&apos;ve heard arguments before (from my Process buddy) that the movement towards complexity &quot;seems to be moving somewhere&quot; but I think that this is an instance of mistaking the forest for the trees. &quot;Sometimes a cigar is just a cigar,&quot; to quote Freud. - What would be your measure of complexity? There are worms that have a more complex genome than ours, yet I doubt one would argue that the movement towards complexity ends in a nematode. This then leads to the question that complexity maybe isn&apos;t caused by DNA/RNA, but by something else... but now you&apos;re getting into a thornier bush--Gene regulation and expression. (where &quot;junk DNA&quot; likely plays its role.) - <wild supposition>&#13;&#10;It&apos;s possible I suppose to use an analagous argument, stating that the DNA is the library but that the rest of our machinery is somewhat free to make mistakes--like human consciousness. In this view consciousness is a transitory state between processing and the read/write of our memory. Analogously, changes happen between DNA-->RNA-->Protein-->Trait and may or may not be corrected. But even in this analogy there is no discernible teleology for our own consciousness, much less that of the genome. &#13;&#10;</wild supposition>

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Tuesday, July 28, 2009, 20:34 (5393 days ago) @ xeno6696

The coming climate change will cause a tremendous shift towards &quot;noncomplexity&quot; as it were. The coming shift will be the bulge of the mass extinction brought about by yours truly, and all my ancestors. We&apos;ll call it an &quot;ecological downturn.&quot; - Matt: You were worried in a recent post that I would pounce on you. The above is very pounceable. What coming climate change? Are you believing the world media frenzy, or Al gore? You are a good skeptic. Bring it forward to modern times. There are a number of important scientists who think it is all hogwash. Kyoto is gone. The G8 just put off any important action for years. In the last 10 years global temperatures have dropped, arctic ice is increasing again, but the common media don&apos;t tell us about that. Cap and trade is economic disaster. Europe is currently leaving it, while our nutty President wants it. - Please understand H.L. Mencken&apos;s observation that &quot;The urge to save humanity is always a false front for the urge to rule it.&quot; Every supposed disaster allows for more central governmental control. - And now this very recent article by Robert Lindzen. If you don&apos;t recognize that name, you should: - http://www.quadrant.org.au/blogs/doomed-planet/2009/07/resisting-climate-hysteria

Evolution

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 21:48 (5393 days ago) @ David Turell

The coming climate change will cause a tremendous shift towards &quot;noncomplexity&quot; as it were. The coming shift will be the bulge of the mass extinction brought about by yours truly, and all my ancestors. We&apos;ll call it an &quot;ecological downturn.&quot;&#13;&#10;> &#13;&#10;> Matt: You were worried in a recent post that I would pounce on you. The above is very pounceable. What coming climate change? Are you believing the world media frenzy, or Al gore? You are a good skeptic. Bring it forward to modern times. There are a number of important scientists who think it is all hogwash. Kyoto is gone. The G8 just put off any important action for years. In the last 10 years global temperatures have dropped, arctic ice is increasing again, but the common media don&apos;t tell us about that. Cap and trade is economic disaster. Europe is currently leaving it, while our nutty President wants it.&#13;&#10;> - Lets remove the UN reports, as I suspect you won&apos;t accept them anyway. - You cannot find a single U.S. science organization that refutes climate change. Not NASA, not USGS, not any lesser organization that I&apos;m not recalling. - A handful of scientists does not make a consensus. The work done in Greenland on the ice cores is pretty damn conclusive to me. There is a correlation between environmental C02 and warming. (Doesn&apos;t prove causation.) But the fact that at no time that they can find have CO2 levels gone this high, this fast. THAT is irrefutable as its cause; burning of fossil fuels + the institution of monocultures. - A climate change is occuring, I find it hard to believe you deny it. What is debatable is whether or not we are the cause. Most of the best competing explanations for the climate change (such as sunspots, cosmic rays) have been debunked. I don&apos;t know what the most recent competing theories are but the most compelling is &quot;we have no idea if this is part of the normal cycle.&quot; Still, I see nothing wrong with creating a market and an economy based around technologies that will help us moderate our environmental impact. Furthermore technologies to &quot;terraform&quot; our own world would be beneficial in the future as we move on to new worlds. - It&apos;s not just climate change though. The act of agriculture itself enforces a monocultural environment that puts &quot;natural&quot; systems in some level of stress. The type of farming we have now in the US is drastically different than 100 years ago. Ignoring the impact we have on the environment is not acceptable, and while the climate change isn&apos;t preventable, our agricultural techniques ARE. - - - > Please understand H.L. Mencken&apos;s observation that &quot;The urge to save humanity is always a false front for the urge to rule it.&quot; Every supposed disaster allows for more central governmental control.&#13;&#10;> - Though here you are talking to someone who tends to favor dictatorships. Aristotle was right in saying that democracies are simply another tyranny. The essay &quot;Was Democracy just a Moment?&quot; forces any decent skeptic to consider if democracy is the best thing, all the time. (I am of the opinion that it is not.) - My two biggest political heroes are King Leonidas of Sparta and Octavian Caesar. Both of them knew how to excercise their power and will to force historical changes above and beyond the constraints of a democratic system of government. - > And now this very recent article by Robert Lindzen. If you don&apos;t recognize that name, you should: &#13;&#10;> &#13;&#10;> http://www.quadrant.org.au/blogs/doomed-planet/2009/07/resisting-climate-hysteria - The climate change is going to force major changes in coastal areas and funnel millions of dollars on &quot;saving&quot; those areas. New Orleans should have been relocated 20-50 miles inland after Katrina. If our leaders had any sense they would cut off federal aid to that city until its residents come to their senses. I wasn&apos;t familiar with Lindzen, but he&apos;s more or less preaching to the choir here. - Actually, I&apos;m more interested in what we&apos;ll find if the Antarctic cap melts. Think of the ancient plants and microbes buried under there...

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\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Wednesday, July 29, 2009, 01:45 (5392 days ago) @ xeno6696

You cannot find a single U.S. science organization that refutes climate change. Not NASA, not USGS, not any lesser organization that I&apos;m not recalling. - I did not think you were a herd follower, but much more skeptical. - > A handful of scientists does not make a consensus. The work done in Greenland on the ice cores is pretty damn conclusive to me. There is a correlation between environmental C02 and warming. A climate change is occuring, I find it hard to believe you deny it. - I don&apos;t deny the melting glaciers. I&apos;ve seen them over the years in Glacier Nat. Park and Canada. The temps have gone up since the 1970&apos;s and are now starting back down for the past 10 years. There have been times on Earth when the Co2 is 2,000 ppm with low temps, and high temps with Co2 at 200 ppm or below. - > Still, I see nothing wrong with creating a market and an economy based around technologies that will help us moderate our environmental impact. - As a dictator you will not be a capitalist. I can see that. - > New Orleans should have been relocated 20-50 miles inland after Katrina. &#13;&#10;> Actually, I&apos;m more interested in what we&apos;ll find if the Antarctic cap melts. Think of the ancient plants and microbes buried under there... - I agree absolutely about New Orleans, and your Antarctic idea is great. - About Global Warming Skepticism you should follow Lindzen; also Pat Michaels, Satanic Gases; Ian Plimer, Heaven & Earth, Global warming and the missing Science: this geology professor&apos;s book convinced the aussie gov&apos;t to stop the foolishness; Fred Singer, Unstoppable Global warming every 1,500 years. Singer is one of the profs who got our governmentt climate folks to take notice of UHI&apos;s. 2/3rds of all our weather stations have been overrun by city growth and heat. And follow the blog: Watts Up With That. All of these are eye openers.

Evolution: OT: Global Warming

by xeno6696 @, Sonoran Desert, Wednesday, July 29, 2009, 04:00 (5392 days ago) @ David Turell
edited by unknown, Wednesday, July 29, 2009, 04:22

You cannot find a single U.S. science organization that refutes climate change. Not NASA, not USGS, not any lesser organization that I&apos;m not recalling. &#13;&#10;> &#13;&#10;> I did not think you were a herd follower, but much more skeptical. - Your passion on this issue clouds your appraisal of my words-we agree on more than you think. Some of the confusion is my fault. - Since we started agriculture, we&apos;ve started a mass extinction. Whether or not climate change is caused by us, the conversion of forest to farmland has radically impacted every ecosystem we operate in. I accept that. I also accept that it is inevitable. People need work, need resources, need food, need all of that. But knowing what we know now, I fully support conservation efforts. My grandfather sold 4800 acres of prime North Dakotan farmland to the government for wildlife preservation. That drive to protect what we can is strong in me. For the political record he was also a gun collector and an avid hunter, and had businesses in at least 2 states that I&apos;m aware of. That&apos;s where I&apos;m coming from. - But apparently all of those American organizations must consist of liberal left-wing environmentalists! You really think that? Since 2006 no American organization has gone against the consensus view. Why is that? Especially in the Bush years which you would have to agree would have been the best ground to build a scientific argument undermining the issue? Especially with paladins such as Inhoffe you&apos;d totally expect something stronger coming from the scientific community against anthropogenic climate change. - Like the god thing, I&apos;m noncommittal on the issue. Whatever happens, I&apos;ll deal with. My opinion tends to be, that we were wrong in regards to the old &quot;infinite dispersion theory&quot; that acid rain proved wrong. It wouldn&apos;t *shock* me <EDIT> if it turned out to be the case that we impacted climate on a larger scale. - > &#13;&#10;> > A handful of scientists does not make a consensus. The work done in Greenland on the ice cores is pretty damn conclusive to me. There is a correlation between environmental C02 and warming. A climate change is occuring, I find it hard to believe you deny it.&#13;&#10;> &#13;&#10;> I don&apos;t deny the melting glaciers. I&apos;ve seen them over the years in Glacier Nat. Park and Canada. The temps have gone up since the 1970&apos;s and are now starting back down for the past 10 years. There have been times on Earth when the Co2 is 2,000 ppm with low temps, and high temps with Co2 at 200 ppm or below. &#13;&#10;> - Those numbers I hadn&apos;t heard before. Care to share the source? - > > Still, I see nothing wrong with creating a market and an economy based around technologies that will help us moderate our environmental impact. &#13;&#10;> &#13;&#10;> As a dictator you will not be a capitalist. I can see that. - What? What&apos;s a dictatorship w/o wealth? Though the model would have to be more Constantinople than Rome. I&apos;d even mandate a block real estate that would be corporate-tax free for 30 years. - Joking aside, there ARE problems that free markets can&apos;t solve. You missed my point though, all initial basic research traditionally has *always* come by government spending. NASA would never have happened left to market forces. Neither would Columbus&apos;s expedition nor Alexander&apos;s conquering of asia. Any terraforming technology or biofuel will be a huge benefit to farmers, as well as the economy at large, as competition with oil companies would drive new innovations. I would also deregulate to get more refineries up and running and fully and completely support nuclear power. - Do I still sound &quot;herd-like&quot; now? - &#13;&#10;> &#13;&#10;> > New Orleans should have been relocated 20-50 miles inland after Katrina. &#13;&#10;> > Actually, I&apos;m more interested in what we&apos;ll find if the Antarctic cap melts. Think of the ancient plants and microbes buried under there...&#13;&#10;> &#13;&#10;> I agree absolutely about New Orleans, and your Antarctic idea is great.&#13;&#10;> &#13;&#10;> About Global Warming Skepticism you should follow Lindzen; also Pat Michaels, Satanic Gases; Ian Plimer, Heaven & Earth, Global warming and the missing Science: this geology professor&apos;s book convinced the aussie gov&apos;t to stop the foolishness; Fred Singer, Unstoppable Global warming every 1,500 years. Singer is one of the profs who got our governmentt climate folks to take notice of UHI&apos;s. 2/3rds of all our weather stations have been overrun by city growth and heat. And follow the blog: Watts Up With That. All of these are eye openers. - Satanic gases? hehehehehe... oh that stirs the grade-schooler in me... - I&apos;ll add those to my google reader. I should be paying more attention to the issue, it just... hasn&apos;t been that interesting to me overall. - POST EDITED

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\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by xeno6696 @, Sonoran Desert, Thursday, July 23, 2009, 23:30 (5397 days ago) @ David Turell

Dr. Turell&#13;&#10;> &#13;&#10;> My sentence does not say what you imply. Parse the sentence. Perhaps I should have written it differently and used &apos;would&apos; rather than &apos;will&apos;. Note I said &quot;with proper evidence&quot;; there is none at this time, and there may never be evidence to prove him correct, that it takes tiny steps to go from existing species to new species. &#13;&#10;> &#13;&#10;I didn&apos;t communicate myself clearly... when you say &quot;Darwin hasn&apos;t been proven right yet&quot; that translates in my own and (perhaps) to George&apos;s mind directly to evolution itself and bypasses the debated mechanism entirely. I understand you mean the mechanism, I&apos;m just trying to explain why your phrasing comes off as creationist in nature. I can see that you accept evolution, but as I tried to say before, Darwin is more synonymous to evolution itself to most people rather than natural selection. If you were to throw that phrase in alt.atheism, alt.talkorigins or alt.biology on usenet you&apos;d start a knee-jerk flame riot. Most defenders of evolution I&apos;ve met haven&apos;t even read the Origin of the Species, and your point about Darwin&apos;s version of natural selection would go right through their ears as you would be attacking evolution and not natural selection as a slow and continuous process. I hope I&apos;ve made this a little more clear? - > Darwin&apos;s famous quote: &quot;If it could be demonstrated that any complex organ existed which could not possibly been formed by numerous, successive, slight modifications, my theory would absolutely break down.&quot; It is still evolution if a complex organ appeared in a large jump. We know Darwin&apos;s proposal. We see evolution, but once again, there is no absolute proof that it is tiny modifications, or large jumps or both. It is evolution either way. With large jumps the only thing that breaks down is Darwin&apos;s theory of a series of slight modifications. I also understand that philosophically large jumps are disturbing to many people. It adds a large measure of complexity to the evolutionary process, because it makes the coding in DNA/RNA very potent. For the moment I&apos;ll leave it at that. - - As for the content of your post, I know what you&apos;re saying. You&apos;re saying that even though we have a succession of whale fossils that lead from point a to point b, this doesn&apos;t negate the possibility that those collections of traits happened in fits and starts vs. a more sinuous, continuous process. I would add that we also have no reason to think it isn&apos;t a combination of both, depending on the background context. I find nothing wrong (or creationist) in this. Nor even disagreeable. But using the above language this finer point would be lost on most ears.

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\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by George Jelliss ⌂ @, Crewe, Sunday, July 19, 2009, 16:33 (5402 days ago) @ David Turell

DT wrote: I think Matt is closer to understanding my pattern of theorizing than George is. - I had written: I still don&apos;t quite understand your distinction between micro- and macro- evolution. - and I still don&apos;t! - DT: Microevolution is variations in species adapting to changes in environment, etc. These are small and the species can still be identified as the same species. Macroevolution is the appearance of new species from the old ones, a definite step forward in the m ore complex direction that evolution has followed. - It seems to me then that deciding where to draw the line to say that a given species has evolved into a new species is somewhat arbitrary, since every step is very slight but the overall result is noticeable. - Ernst Mayr in &quot;What Evolution Is&quot; mentions &quot;ring species&quot; where a chain of populations curves round an obstacle, a mountain or desert say, and overlap at the ends of the chain where they do not interbreed. Where in the chain does the species become a new one? - Similarlty in the evolution of the whale, gradual changes lead from pachicetus to rhodocetus to dorodon (the fossil species mentioned in the RD video). Since these species have never coexisted at the same time the test of whether they could interbreed does not decide the issue of whether they are distinct species, but there are sufficiently distinct features to justify calling them separate species, but all part of the whale&apos;s family of ancestors. - So it seems to me that this distinction you are making between macro- and micro-evolution is a chimera. It is just where we choose to draw the line. How many hairs must a man lose before we call him bald?

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GPJ

Evolution

by David Turell @, Sunday, July 19, 2009, 21:56 (5402 days ago) @ George Jelliss
edited by unknown, Sunday, July 19, 2009, 22:41

DT wrote: I think Matt is closer to understanding my pattern of theorizing than George is.&#13;&#10;> &#13;&#10;> I had written: I still don&apos;t quite understand your distinction between micro- and macro- evolution.&#13;&#10; &#13;&#10;> and I still don&apos;t!&#13;&#10; &#13;&#10;> DT: Microevolution is variations in species adapting to changes in environment, etc. These are small and the species can still be identified as the same species. Macroevolution is the appearance of new species from the old ones, a definite step forward in the more complex direction that evolution has followed. - &#13;&#10; &#13;&#10;> It seems to me then that deciding where to draw the line to say that a given species has evolved into a new species is somewhat arbitrary, since every step is very slight but the overall result is noticeable. - You are hung up on Darwin&apos;s proposal that tiny steps make new species. I have noted on several occasions that there are also giant jumps in the tree to the new species from the old.&#13;&#10; &#13;&#10;> Ernst Mayr in &quot;What Evolution Is&quot; mentions &quot;ring species&quot; where a chain of populations curves round an obstacle, a mountain or desert say, and overlap at the ends of the chain where they do not interbreed. Where in the chain does the species become a new one? - Loss of interbreeding is the standard dividing point, but I&apos;ve shown that is arbitrary and is imperfect. I am hopeful as we follow biochemical marker molecules, we may have a better dividing line. &#13;&#10; &#13;&#10;> Similarlty in the evolution of the whale, gradual changes lead from pachicetus to rhodocetus to dorodon (the fossil species mentioned in the RD video). Since these species have never coexisted at the same time the test of whether they could interbreed does not decide the issue of whether they are distinct species, but there are sufficiently distinct features to justify calling them separate species, but all part of the whale&apos;s family of ancestors. - I agree with your analysis of the whale tree, but look at where those nostrils are. It would take major plastic surgery to make those moves in the skulls.:-) Those are the big jumps I mean; big jumps separated by many years. For Darwin&apos;s theory&apos;s sake where are the tiny nostril adjustments as they move up the skull? Are you implying that those intermediate fossils are still missing? We don&apos;t know that so I am proposing that the jumps may be real. - > So it seems to me that this distinction you are making between macro- and micro-evolution is a chimera. - No George, you are wrong. This is not an imaginary difference. Again, why did Gould and Eldridge invent &apos;punctuated equilibrium&apos;? Because of big jumps. It is not just that fossils are missing; there are things like the Cambrian Explosion to explain. Prior layers of the Earth reveal sponges and Bilaterians, not animals with appendages and several organ systems. Since the Burgess Shale discoveries about 1880-90, no intermediates worthy of the name have been found. The layers of the Earth are not missing for those Geologic periods. Bad luck or no fossils? We don&apos;t know and either possibility still exists.

Evolution

by George Jelliss ⌂ @, Crewe, Monday, July 20, 2009, 12:00 (5401 days ago) @ David Turell

I think you are misrepresenting &quot;punctuated equilibria&quot;. I looked it up here: - http://en.wikipedia.org/wiki/Punctuated_equilibrium#Common_misconceptions - Quote: &quot;The relationship between punctuationism and gradualism can be better appreciated by considering an example. Suppose the average length of a limb in a particular species grows 50 centimeters (20 inches) over 70,000 years&#226;&#128;&#148;a large amount in a geologically short period of time. If the average generation is seven years, then our given time span corresponds to 10,000 generations. It is therefore reasonable to conclude that if the limb size in our hypothetical population evolved in the most conservative manner, it need only increase at a rate of 0.005 cm per generation (= 50 cm/10,000), despite its abrupt appearance in the geological record.&quot; - This is clearly the case with the changes observed in the whale ancestors. No radical surgery is involved!

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GPJ

Evolution

by David Turell @, Monday, July 20, 2009, 14:55 (5401 days ago) @ George Jelliss

I think you are misrepresenting &quot;punctuated equilibria&quot;. I looked it up here:&#13;&#10; &#13;&#10;> http://en.wikipedia.org/wiki/Punctuated_equilibrium#Common_misconceptions&#13;&... &#13;&#10;> Quote: &quot; It is therefore reasonable to conclude that if the limb size in our hypothetical population evolved in the most conservative manner, it need only increase at a rate of 0.005 cm per generation (= 50 cm/10,000), despite its abrupt appearance in the geological record.&quot;&#13;&#10; &#13;&#10;> This is clearly the case with the changes observed in the whale ancestors. No radical surgery is involved! - &#13;&#10;This is your wishful thinking that evolution occurred in tiny steps. The concept of p-e was to explain the large jumps in the fossil record. There is not one fossil species that has ever shown a series of tiny steps. The entire Wiki &apos;explanation&apos; you have presented to me is hypothetical and represents the opinion of the individual writer, not proof. - All we do know is that there are large jumps in the fossil record (read Gould), and that does not allow any proven conclusion. I have not misrepresented anything to you in the previous post. It was entirely logical.

Evolution: Pre-Cambrian Explosion

by David Turell @, Friday, May 27, 2011, 05:39 (4725 days ago) @ David Turell

Since the Burgess Shale discoveries about 1880-90, no intermediates worthy of the name have been found. The layers of the Earth are not missing for those Geologic periods. Bad luck or no fossils? We don&apos;t know and either possibility still exists.-Now we know a bit. Very elementary Eukaryote forms have been found about 500 million years before the Cambrian Explosion according to an article in Nature just published.-http://www.nature.com/nature/journal/v473/n7348/full/nature09943.html

Evolution of Animals from fresh not seawater?

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 22:15 (5393 days ago) @ David Turell

http://www.sciencedaily.com/releases/2009/07/090727191732.htm - Thought you&apos;d appreciate this one, David.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution of Animals from fresh not seawater?

by David Turell @, Tuesday, July 28, 2009, 22:32 (5393 days ago) @ xeno6696

http://www.sciencedaily.com/releases/2009/07/090727191732.htm&#13;&#10; &#13;&#10;> Thought you&apos;d appreciate this one, David. - Thanks for catching that story. I somehow overlooked it this AM. Perhaps too sleepy. I wonder what animals these suspected embryoes (sp?) would grow into. Too early for Cambrian. Funny no adults.

Evolution of Animals from fresh not seawater?

by xeno6696 @, Sonoran Desert, Tuesday, July 28, 2009, 23:52 (5392 days ago) @ David Turell

http://www.sciencedaily.com/releases/2009/07/090727191732.htm&#13;&#10;> &#13;&#10;> > Thought you&apos;d appreciate this one, David.&#13;&#10;> &#13;&#10;> Thanks for catching that story. I somehow overlooked it this AM. Perhaps too sleepy. I wonder what animals these suspected embryoes (sp?) would grow into. Too early for Cambrian. Funny no adults. - That solves it. Eggs came before chickens!!!!

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

It\'s all in the genes

by David Turell @, Friday, September 04, 2009, 15:37 (5355 days ago) @ David Turell

Three newly discovered human genes are in no other branch member of our tree of life. The writer is somewhat confused about junk DNA and its relationship to active RNA but the basis findings reported are fascinating-http://www.newscientist.com/article/mg20327244.100-three-human-genes-evolved-from-junk.html

It\'s all in the genes

by David Turell @, Sunday, September 13, 2009, 14:28 (5346 days ago) @ David Turell

But perhaps it isn&apos;t. Predation by human consumption of human food species is shown to phenotypically change the species fairly rapidly.... this fits Reznick&apos;s guppies and other similar studies into epigenetics. Funny but epigenetics is not discussed in this article on &apos;unnatural selection&apos;, a study on the issue of the need to change harvesting techniques:-http://www.nature.com/nature/journal/v457/n7231/full/457803a.html

It\'s all in the genes

by David Turell @, Thursday, September 17, 2009, 00:07 (5342 days ago) @ David Turell

This is one gene therapy that may make color blind men (one in 12)happier. And better, it looks as if it will work well.-&#13;&#10;http://www.nature.com/news/2009/090916/full/news.2009.921.html

Evolution

by David Turell @, Friday, September 25, 2009, 13:55 (5334 days ago) @ David Turell

Here is a nice addition to our discussion of Dawkin&apos;s whale fossil presentation, discovering origins and relationships from an earlier time:-&#13;&#10;http://www.sciencedaily.com/releases/2009/09/090924185533.htm-I have also mentioned bilaterians as a group immediately preceding the Cambrian Explosion. An article concerning them:-http://www.sciencedaily.com/releases/2009/09/090923112543.htm

Evolution

by David Turell @, Saturday, September 26, 2009, 14:37 (5333 days ago) @ David Turell

A discussion of Robert Broom and his different views of evolution: Every species has stopped except humans!-http://scienceblogs.com/laelaps/2009/09/robert_broom_and_the_end_of_ev.php?utm_source=selectfeed&utm_medium=rss

Evolution

by David Turell @, Monday, September 28, 2009, 01:10 (5331 days ago) @ David Turell

A brief look at Lynn Margulis, the lady who taught us about mitochondria and how they possibly appeared as a gift from the method of symbiosis. Note how much resistance she had from Neo-Darwinists, who Kuhnian-like fight for their pre-conceived notions.-&#13;&#10;http://www.uwalumni.com/home/alumniandfriends/onwisconsin/archives/fall2009/fall09_evolution.aspx

Evolution

by David Turell @, Tuesday, September 29, 2009, 14:10 (5330 days ago) @ David Turell
edited by unknown, Tuesday, September 29, 2009, 14:26

An unsolved problem is how do cell receptors know when a concentration of nutrient or toxin is outside the cell? We have discussed quorum sensing in bacteria, in relation to infection. Yeast need to sense the presence of a mate.-This article discusses the problem: -http://sciencenow.sciencemag.org/cgi/content/full/2009/928/2-&#13;&#10;The following article discusses the orgin of life issues and decided that replicating molecles have an advantage over catalyzed reactions. Still a very complex issue.-http://www.physorg.com/news173351870.html

Evolution

by David Turell @, Thursday, October 01, 2009, 14:59 (5328 days ago) @ David Turell

Some Archaea have now been found to use only nitrogen as a source of energy. These are the most ancient of bacteria.-http://www.sciencedaily.com/releases/2009/09/090930132656.htm

Evolution

by David Turell @, Friday, October 02, 2009, 14:23 (5327 days ago) @ David Turell
edited by unknown, Friday, October 02, 2009, 14:28

Our earliest yet ancestor shows we are different in kind, not degree. We now are sure we did not descent from apes. We are not chimps!-http://www.nature.com/news/2009/091001/full/news.2009.966.html-http://www.sciencedaily.com/releases/2009/10/091001110548.htm

Evolution

by xeno6696 @, Sonoran Desert, Sunday, October 04, 2009, 07:13 (5325 days ago) @ David Turell

Our earliest yet ancestor shows we are different in kind, not degree. We now are sure we did not descent from apes. We are not chimps!&#13;&#10;> &#13;&#10;> http://www.nature.com/news/2009/091001/full/news.2009.966.html&#13;&#10;> &#13;&#10;> http://www.sciencedaily.com/releases/2009/10/091001110548.htm-Doesn&apos;t negate the concept of a common ancestor, however.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Wednesday, October 07, 2009, 16:17 (5322 days ago) @ xeno6696

Our earliest yet ancestor shows we are different in kind, not degree. We now are sure we did not descent from apes. We are not chimps!&#13;&#10;> > &#13;&#10;> > http://www.nature.com/news/2009/091001/full/news.2009.966.html&#13;&#10;> > &#13;&#10;> > http://www.sciencedaily.com/releases/2009/10/091001110548.htm&#13;&#10;> &#13;&#10;> Doesn&apos;t negate the concept of a common ancestor, however.-I know that. It is somebody at least 6 million years ago. There are theories that we were the main line and the apes branched off from us. Certain characteristics of the new find fit that. Also human and ape fetuses are very similar in features to start and then later more ape-like features appear in the apes.

Evolution

by David Turell @, Wednesday, October 07, 2009, 17:26 (5322 days ago) @ David Turell

&#13;&#10;> There are theories that we were the main line and the apes branched off from us. Certain characteristics of the new find fit that. Also human and ape fetuses are very similar in features to start and then later more ape-like features appear in the apes.-Here is Frans De Waal on our gentle ancestor, &apos;Ardi&apos; and how gentle they may have been, not like Chimps now. Supports the theory that apes really differ from us and we did not copy them in our attributes, and again that we are different in kind not degree.-http://online.wsj.com/article/SB10001424052748704471504574449012560741086.html

Evolution

by dhw, Friday, October 09, 2009, 13:01 (5320 days ago) @ David Turell

I&apos;m not sure how excited we should be about Ardi, which my newspaper dubbed our &quot;oldest ancestor&quot; ... the same title that was given to Lucy, and will also be given to the next sensational discovery. I can well understand the thrill of the find, but can we really learn that much? Ardi lived in a social group, was an upright walker, had long arms, spent a lot of her time in the trees, and had a relatively small brain. But hold on. Lucy lived in a social group, was an upright walker, had long arms, spent a lot of her time in the trees, and had a relatively small brain. Is it so surprising that a creature in our direct line lived in a social group and walked upright, that tree-dwellers had long arms, and that until the brain became larger, it was smaller? -It&apos;s true that 4.4 million years takes us back a lot further than Lucy. But Ardi had a mummy and daddy, who by definition were also our ancestors, and didn&apos;t they have their ancestors, and they theirs, all the way back to Little Minnie Molecule? If Evolution is correct, all creatures have common ancestors, and no-one knows just where the paths separated. Tim White, professor of human evolution at Berkeley, who is hoping to find the &quot;last common ancestor&quot;, says: &quot;We haven&apos;t found it, but we&apos;ve come closer than we&apos;ve ever come, at 4.4.million years ago.&quot; Well, yes, 4.4 million is closer than 3.2 million, but even if chimps and humans did diverge from a pre-Ardi hominid, how can we ever be sure we&apos;ve found the last common ancestor, since no-one can possibly know what has NOT been discovered?-Chris Stringer, head of human origins at the Natural History Museum, London, is quoted as saying: &quot;The assumption among many researchers is that while humans have evolved a lot, chimps haven&apos;t changed much so we can use them as a model of the common ancestor we shared. But why shouldn&apos;t chimps have changed? Everything evolves. We are really trying to establish what set us off on our evolutionary path.&quot; Gerald Schroeder&apos;s God fiddling around? Ardi&apos;s great great grandparents having a little accident? One thing I&apos;ll guarantee: Ardi won&apos;t tell us.

Evolution

by David Turell @, Friday, October 09, 2009, 15:06 (5320 days ago) @ dhw
edited by unknown, Friday, October 09, 2009, 15:13

Ardi shows that the human line was on a fast change track, admittedly over millions of years. There is definite evidence, not proven, that humans are the main track and chimps and other apes branched off from us, after the split from the common ancestor, who may be more human than we realized.-Climate on Earth is a lot more variable than folks realize. The ice sheets are 14-16 million years old, C02 has been much higher, etc. That must cause major evolutionary effects.-http://www.sciencedaily.com/releases/2009/10/091008152242.htm-I showed a ribosome map this week. Complex. Now ther is a DNA map showing how tightly it is packed and uses a fractal arrangement for easy unpacking to read information. Matt should love this.-http://www.physorg.com/news174230568.html

Evolution

by David Turell @, Sunday, October 11, 2009, 14:05 (5318 days ago) @ David Turell

I showed a ribosome map this week. Complex. Now ther is a DNA map showing how tightly it is packed and uses a fractal arrangement for easy unpacking to read information. Matt should love this.&#13;&#10;> &#13;&#10;> http://www.physorg.com/news174230568.html-Here is a summary of the article in Science. I hoped Matt would comment. We have a six-foot-long DNA packed into every nucleus in the trillions of cells in the body. They have a fractal formulation to pack related information in easily unpacked areas! This makes the information easily and raidly retrievable as needed.-http://www.sciencemag.org/cgi/content/abstract/326/5950/289

Evolution

by David Turell @, Friday, October 09, 2009, 17:57 (5320 days ago) @ dhw

I&apos;m not sure how excited we should be about Ardi, which my newspaper dubbed our &quot;oldest ancestor&quot; ... the same title that was given to Lucy, and will also be given to the next sensational discovery. I can well understand the thrill of the find, but can we really learn that much? -Yes we can.The presumption is that we would look more ape-like the further back we go, and we don&apos;t. -&#13;&#10; &#13;&#10;> It&apos;s true that 4.4 million years takes us back a lot further than Lucy. But Ardi had a mummy and daddy, who by definition were also our ancestors, and didn&apos;t they have their ancestors, and they theirs, all the way back to Little Minnie Molecule? If Evolution is correct, all creatures have common ancestors, and no-one knows just where the paths separated.-Of course! But how did the paths separate? As a T with a right angle branch with anatomically little in common, or as a Y where the descendents have lots in common. - &#13;&#10;> Chris Stringer, head of human origins at the Natural History Museum, London, is quoted as saying: &quot;The assumption among many researchers is that while humans have evolved a lot, chimps haven&apos;t changed much so we can use them as a model of the common ancestor we shared. But why shouldn&apos;t chimps have changed? Everything evolves. We are really trying to establish what set us off on our evolutionary path. -The assumption by researchers,quoted above, may be very wide of the mark. Perhaps chimps evolved from our line, not the other way around. See my previous entry with Matt pointing out fetal development comparing humans and chimps (all great apes)and in fetal development they branch off from us. (Oct. 8th, 21:46) Using the assumption that fetal development mimics evolution, leads to the reasoning that they branch from us in a &quot;T&quot; branching.-It is obvious that humans use tongue-in-cheek commentaries. I doubt that apes do. Another difference. And as Yogi Berra said, &apos;when coming to a fork in the road, take it&apos;. The forks are nothing to &apos;spoon&apos; over. They tell us a great deal about how evolution is driven.

Evolution

by xeno6696 @, Sonoran Desert, Thursday, October 08, 2009, 19:46 (5321 days ago) @ David Turell

Our earliest yet ancestor shows we are different in kind, not degree. We now are sure we did not descent from apes. We are not chimps!&#13;&#10;> > > &#13;&#10;> > > http://www.nature.com/news/2009/091001/full/news.2009.966.html&#13;&#10;> > > &#13;&#10;> > > http://www.sciencedaily.com/releases/2009/10/091001110548.htm&#13;&#10;> > &#13;&#10;> > Doesn&apos;t negate the concept of a common ancestor, however.&#13;&#10;> &#13;&#10;> I know that. It is somebody at least 6 million years ago. There are theories that we were the main line and the apes branched off from us. Certain characteristics of the new find fit that. Also human and ape fetuses are very similar in features to start and then later more ape-like features appear in the apes.-Well, at some point *all* fetuses look the same. One of the most interesting things I&apos;ve always loved is the human &quot;gill&quot; structure during early development. -I had not however heard that there was a suggestion that our line was the one that other species had branched off of.

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Thursday, October 08, 2009, 21:46 (5321 days ago) @ xeno6696

&#13;&#10;> Well, at some point *all* fetuses look the same. One of the most interesting things I&apos;ve always loved is the human &quot;gill&quot; structure during early development. &#13;&#10;> &#13;&#10;> I had not however heard that there was a suggestion that our line was the one that other species had branched off of.-Thank you for the quotes around &apos;gills&apos;. What a phony business, Haeckel&apos;s embryo drawings fraud and all that. The point being all fetuses don&apos;t look the same even early on, but Scientific American, July, 2002, pg. 33, &quot;Human Evolution, Food for Thought&quot;, article comments that apes and we do look alike early on, but they diverge from us. Look it up.

Evolution

by xeno6696 @, Sonoran Desert, Thursday, October 08, 2009, 22:46 (5321 days ago) @ David Turell

&#13;&#10;> > Well, at some point *all* fetuses look the same. One of the most interesting things I&apos;ve always loved is the human &quot;gill&quot; structure during early development. &#13;&#10;> > &#13;&#10;> > I had not however heard that there was a suggestion that our line was the one that other species had branched off of.&#13;&#10;> &#13;&#10;> Thank you for the quotes around &apos;gills&apos;. What a phony business, Haeckel&apos;s embryo drawings fraud and all that. The point being all fetuses don&apos;t look the same even early on, but Scientific American, July, 2002, pg. 33, &quot;Human Evolution, Food for Thought&quot;, article comments that apes and we do look alike early on, but they diverge from us. Look it up.-I&apos;ll trust you for now. Huge amount of midterm tests coming up... I dropped a class to make sure I&apos;d stay afloat. First week at Mutual was this week too. -On the embryo note, if you go back to blastocysts, I challenge you to find the differences! :-P

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Thursday, October 08, 2009, 23:23 (5320 days ago) @ xeno6696

On the embryo note, if you go back to blastocysts, I challenge you to find the differences! :-P-&#13;&#10;Touche&apos;

Evolution

by David Turell @, Monday, October 12, 2009, 16:07 (5317 days ago) @ David Turell

Our earliest yet ancestor shows we are different in kind, not degree. We now are sure we did not descent from apes. We are not chimps!&#13;&#10;> > > &#13;&#10;> > > http://www.nature.com/news/2009/091001/full/news.2009.966.html&#13;&#10;> > > &#13;&#10;> > > http://www.sciencedaily.com/releases/2009/10/091001110548.htm&#13;&#10;> > &#13;&#10;> > Doesn&apos;t negate the concept of a common ancestor, however.&#13;&#10;> &#13;&#10;> I know that. It is somebody at least 6 million years ago. There are theories that we were the main line and the apes branched off from us. Certain characteristics of the new find fit that. Also human and ape fetuses are very similar in features to start and then later more ape-like features appear in the apes.-&#13;&#10;Another link to an author&apos;s summary from the Ardi team of researchers, showing the human lineage concept with apes branching off:-http://www.sciencemag.org/cgi/content/full/326/5949/74/DC1

Evolution

by dhw, Tuesday, October 13, 2009, 10:03 (5316 days ago) @ David Turell

David: There is definite evidence, not proven, that humans are the main track and chimps and other apes branched off from us, after the split from the common ancestor...-C.O. Lovejoy: The discovery of Ar. Ramidus also requires rejection of theories that presume a chimpanzee or gorilla-like ancestor to explain habitual upright walking. Ar. Ramidus was fully capable of bipedality and had evolved a substantially modified pelvis and foot with which to walk upright. -I&apos;m certainly not going to argue about this, as I&apos;m out of my depth, but there are things that I simply don&apos;t understand. The following are therefore genuine questions, and I&apos;d be most grateful if you or anyone could supply at least some answers.-1) Normally when I read &quot;the common ancestor&quot;, I assume it&apos;s the ancestor common to humans and apes, but if apes branched off the hominid line, what was the common ancestor common to? And don&apos;t apes then become irrelevant to human ancestry?-2) If apes did indeed branch off from humans, is it not possible that Ardi&apos;s long arms and opposable toes represent a development from the shorter arms and non-opposable toes of non-tree-climbing hominids? And that the all-important projecting canine (though I thought that was a purely male feature) plus aggressive behaviour came after Ardi? In other words, that she&apos;s moving away from the hominid line towards chimpanzeedom?-3) Ardi is estimated to be 4.4 million years old. I thought the conventional theory was that humans and apes split from the &quot;common ancestor&quot; about 6 million years ago, i.e. long before Ardi hit the ground. So if chimps and gorillas already existed, say, a million or so years before her, how does she disprove the theory of the chimpanzee-like ancestor? Wouldn&apos;t we need to know for sure that chimps did NOT exist before her?-I apologize for the ignorance underlying these questions, but perhaps I&apos;m not the only one in need of enlightenment.

Evolution

by David Turell @, Tuesday, October 13, 2009, 15:36 (5316 days ago) @ dhw

David: There is definite evidence, not proven, that humans are the main track and chimps and other apes branched off from us, after the split from the common ancestor...&#13;&#10;> &#13;&#10;> C.O. Lovejoy: The discovery of Ar. Ramidus also requires rejection of theories that presume a chimpanzee or gorilla-like ancestor to explain habitual upright walking. Ar. Ramidus was fully capable of bipedality and had evolved a substantially modified pelvis and foot with which to walk upright. -Lovejoy&apos;s summary is available here (also posted 10/12/09, 16:07):-http://www.sciencemag.org/cgi/content/full/326/5949/74/DC1&#13;&#10;> &#13;&#10;> 1) Normally when I read &quot;the common ancestor&quot;, I assume it&apos;s the ancestor common to humans and apes, but if apes branched off the hominid line, what was the common ancestor common to? And don&apos;t apes then become irrelevant to human ancestry?-Your last sentence is exactly correct. The supposition has been that we humans shared a common ancestor that was very ape-like. Ardi is telling us that the common ancestor may have been much more hominid-like, with the apes extending their arm length. Perhaps the &apos;common ancestor&apos; did not have upright posture, but the human line may have developed it quickly and apes never did. We just don&apos;t know at this juncture, but the thinking is being revised. we don&apos;t seem to have alot of ape in us, and it may be the o&#13;&#10;> &#13;&#10;> 2) If apes did indeed branch off from humans, is it not possible that Ardi&apos;s long arms and opposable toes represent a development from the shorter arms and non-opposable toes of non-tree-climbing hominids? And that the all-important projecting canine (though I thought that was a purely male feature) plus aggressive behaviour came after Ardi? In other words, that she&apos;s moving away from the hominid line towards chimpanzeedom?&#13;&#10;> &#13;&#10;> 3) Ardi is estimated to be 4.4 million years old. I thought the conventional theory was that humans and apes split from the &quot;common ancestor&quot; about 6 million years ago, i.e. long before Ardi hit the ground. So if chimps and gorillas already existed, say, a million or so years before her, how does she disprove the theory of the chimpanzee-like ancestor? Wouldn&apos;t we need to know for sure that chimps did NOT exist before her?&#13;&#10;> &#13;&#10;> I apologize for the ignorance underlying these questions, but perhaps I&apos;m not the only one in need of enlightenment.

Evolution

by David Turell @, Tuesday, October 13, 2009, 16:43 (5316 days ago) @ David Turell

David: There is definite evidence, not proven, that humans are the main track and chimps and other apes branched off from us, after the split from the common ancestor...&#13;&#10;> > &#13;&#10;> > C.O. Lovejoy: The discovery of Ar. Ramidus also requires rejection of theories that presume a chimpanzee or gorilla-like ancestor to explain habitual upright walking. Ar. Ramidus was fully capable of bipedality and had evolved a substantially modified pelvis and foot with which to walk upright. &#13;&#10;> &#13;&#10;> Lovejoy&apos;s summary is available here (also posted 10/12/09, 16:07):&#13;&#10;> &#13;&#10;> http://www.sciencemag.org/cgi/content/full/326/5949/74/DC1&#13;&#10;> > &#13;&#10;> > 1) Normally when I read &quot;the common ancestor&quot;, I assume it&apos;s the ancestor common to humans and apes, but if apes branched off the hominid line, what was the common ancestor common to? And don&apos;t apes then become irrelevant to human ancestry?&#13;&#10;> &#13;&#10;> Your last sentence is exactly correct. The supposition has been that we humans shared a common ancestor that was very ape-like. Ardi is telling us that the common ancestor may have been much more hominid-like, with the apes extending their arm length. Perhaps the &apos;common ancestor&apos; did not have upright posture, but the human line may have developed it quickly and apes never did. We just don&apos;t know at this juncture, but the thinking is being revised. we don&apos;t seem to have alot of ape in us, and it may be the o&#13;&#10;> > &#13;&#10;> > 2) If apes did indeed branch off from humans, is it not possible that Ardi&apos;s long arms and opposable toes represent a development from the shorter arms and non-opposable toes of non-tree-climbing hominids? And that the all-important projecting canine (though I thought that was a purely male feature) plus aggressive behaviour came after Ardi? In other words, that she&apos;s moving away from the hominid line towards chimpanzeedom?&#13;&#10;> > &#13;&#10;> > 3) Ardi is estimated to be 4.4 million years old. I thought the conventional theory was that humans and apes split from the &quot;common ancestor&quot; about 6 million years ago, i.e. long before Ardi hit the ground. So if chimps and gorillas already existed, say, a million or so years before her, how does she disprove the theory of the chimpanzee-like ancestor? Wouldn&apos;t we need to know for sure that chimps did NOT exist before her?&#13;&#10;> > &#13;&#10;> > I apologize for the ignorance underlying these questions, but perhaps I&apos;m not the only one in need of enlightenment.-I apologize for this incomplete entry. It disappeared from my computer and popped up on the site before I completed it. It is completed in the next entry. I have discussed with Neil how some of my postings simply disappear when I try to enter them. I don&apos;t know if it is me, as I am a wild self-taught typist, or goblins in the software of the site.

Evolution

by David Turell @, Tuesday, October 13, 2009, 16:06 (5316 days ago) @ dhw

&#13;&#10;> C.O. Lovejoy: The discovery of Ar. Ramidus also requires rejection of theories that presume a chimpanzee or gorilla-like ancestor to explain habitual upright walking. Ar. Ramidus was fully capable of bipedality and had evolved a substantially modified pelvis and foot with which to walk upright. -Lovejoy&apos;s summary is here: (also posted 10/12/09, 16:07)- http://www.sciencemag.org/cgi/content/full/326/5949/74/DC1 -> 1) Normally when I read &quot;the common ancestor&quot;, I assume it&apos;s the ancestor common to humans and apes, but if apes branched off the hominid line, what was the common ancestor common to? And don&apos;t apes then become irrelevant to human ancestry?-Your last sentence is the correct conclusion. It is very important to understand that the prevailing opinion up until this juncture with Ardi is that we humans decended from an ape-like ancestor. Now that appears to not be the case. If there is a common ancestor, and one would think there must be, since evolution seems to act like a tree with branching, it may well be more hominid-like than ape-like, a complete reversal of previous thought.--> 2) If apes did indeed branch off from humans, is it not possible that Ardi&apos;s long arms and opposable toes represent a development from the shorter arms and non-opposable toes of non-tree-climbing hominids? And that the all-important projecting canine (though I thought that was a purely male feature) plus aggressive behaviour came after Ardi? In other words, that she&apos;s moving away from the hominid line towards chimpanzeedom?-No, to answer that question, look at Lucy, a million or so years down the line. Ardi is a development toward the Luci skeleton formation, with a loss of the prehensile big toe, and other changes.&#13;&#10;>&#13;&#10;> 3) Ardi is estimated to be 4.4 million years old. I thought the conventional theory was that humans and apes split from the &quot;common ancestor&quot; about 6 million years ago, i.e. long before Ardi hit the ground. So if chimps and gorillas already existed, say, a million or so years before her, how does she disprove the theory of the chimpanzee-like ancestor? Wouldn&apos;t we need to know for sure that chimps did NOT exist before her?-Chimps may have branched off the main line (hominid)as stated above and established their general appearance immediately, and have been static ever since. We just don&apos;t know. But as I finish Schroeder I&apos;ll be reading &quot;Not A Chimp&quot;, by Jeremy Taylor (Channel 4 in the UK), which looks at the specific genetic differences, small in total percentage, but extremely large in effect.&#13;&#10;> &#13;&#10;> I apologize for the ignorance underlying these questions, but perhaps I&apos;m not the only one in need of enlightenment.-These findings are turning Darwin&apos;s assumptions on their head. If they turn out to be true, then we are definitely different in kind, and a universal intelligence, or God, must philosophically rear its ugly head!

Evolution

by dhw, Wednesday, October 14, 2009, 11:09 (5315 days ago) @ David Turell

David: It is very important to understand that the prevailing opinion up until this juncture with Ardi is that we humans descended from an ape-like ancestor. Now that appears not to be the case.-I&apos;m going to be stubborn, not because I know anything, but because I still find it hard to follow the reasoning. -1) Scientists tell us that humans and chimps split from a common ancestor about 6 million years ago (but it could have been a lot more). If the theory is correct, it should be possible to find hominid fossils dating back 6 million years or so. We&apos;ve now found one that dates back only 4.4 million years, so why is human ancestry suddenly turned on its head?-2) The theory has been that the &quot;common ancestor&quot; was &quot;more ape-like&quot; than hominid. Presumably this is because we regard humans as more advanced than apes (chimps might disagree), and we assume that evolution has moved towards &quot;advancement&quot; rather than in the reverse direction. There is no fossil evidence to prove this assumption or its converse (a &quot;more hominid-like&quot; ancestor), as we have a gap of, say, a couple of million years before Ardi. Aren&apos;t both theories therefore pure speculation, although the first seems more firmly based on common sense? However, even if the new theory is correct, why does it make humans &quot;different in kind&quot;? &quot;More hominid-like&quot; is not human, and in any case the &quot;common ancestor&quot; also had ancestors, so didn&apos;t we originally still descend from something that was not human?-3) If we really are &quot;different in kind&quot;, isn&apos;t that because of our brain? But Lucy, we are told, proved that early humans walked upright before they evolved large brains, and Ardi&apos;s brain is the size of a chimp&apos;s. Is upright walking therefore the criterion for &quot;different in kind&quot;?-Apologies again if I&apos;m missing something obvious.

Evolution

by David Turell @, Thursday, October 15, 2009, 01:14 (5314 days ago) @ dhw

&#13;&#10;> I&apos;m going to be stubborn, not because I know anything, but because I still find it hard to follow the reasoning. &#13;&#10;> &#13;&#10;> 1) Scientists tell us that humans and chimps split from a common ancestor about 6 million years ago (but it could have been a lot more). If the theory is correct, it should be possible to find hominid fossils dating back 6 million years or so. We&apos;ve now found one that dates back only 4.4 million years, so why is human ancestry suddenly turned on its head?-Because of the following quote from the recent studies. It appears that the main line of descent for humans and apes is different. Yes, there was a common ancestor, but the apes stayed much more primative. -Quote:&#13;&#10;Ar. ramidus, first described in 1994 from teeth and jaw fragments, is now represented by 110 specimens, including a partial female skeleton rescued from erosional degradation. This individual weighed about 50 kg and stood about 120 cm tall. In the context of the many other recovered individuals of this species, this suggests little body size difference between males and females. Brain size was as small as in living chimpanzees. The numerous recovered teeth and a largely complete skull show that Ar. ramidus had a small face and a reduced canine/premolar complex, indicative of minimal social aggression. Its hands, arms, feet, pelvis, and legs collectively reveal that it moved capably in the trees, supported on its feet and palms (palmigrade clambering), but lacked any characteristics typical of the suspension, vertical climbing, or knuckle-walking of modern gorillas and chimps. Terrestrially, it engaged in a form of bipedality more primitive than that of Australopithecus, and it lacked adaptation to &quot;heavy&quot; chewing related to open environments (seen in later Australopithecus). Ar. ramidus thus indicates that the last common ancestors of humans and African apes were not chimpanzee-like and that both hominids and extant African apes are each highly specialized, but through very different evolutionary pathways.-> &#13;&#10;> 2) The theory has been that the &quot;common ancestor&quot; was &quot;more ape-like&quot; than hominid. so didn&apos;t we originally still descend from something that was not human?-Way back before the two lines, ape & hominid developed&#13;&#10;> &#13;&#10;> 3) If we really are &quot;different in kind&quot;, isn&apos;t that because of our brain? But Lucy, we are told, proved that early humans walked upright before they evolved large brains, and Ardi&apos;s brain is the size of a chimp&apos;s. Is upright walking therefore the criterion for &quot;different in kind&quot;?-Not as I see it. There is more. The hominids were selected (by whom or what)as a separate line that ended up with completely upright walking, better use of hands (we can hammer, they can&apos;t) and a huge brain. We did not need a huge brain to survive,any more than apes did. What are we doing here if nature does the selecting? We have gone way beyond what survival required, if one follows Darwin. If we developed from apes and we apparently did not, then we differ in kind, not degree.

Evolution

by dhw, Friday, October 16, 2009, 11:50 (5313 days ago) @ David Turell

I pointed out that if humans and apes split from a common ancestor approx. 6 million years ago, it should be possible to find hominid fossils that go back 6 million years. David responds: &quot;Yes, there was a common ancestor, but the apes stayed much more primitive.&quot; That seems to me to be in line with the original theory, but you go on to quote from the research publication, which concludes:-&quot;Ar. Ramidus thus indicates that the last common ancestors of humans and African apes were not chimpanzee-like and that both hominids and extant African apes are each highly specialized, but through very different evolutionary pathways.&quot;-Forgive me if I continue to go my own ape-like way, but there are things that remain unclear to me. I don&apos;t understand how one can draw conclusions about the &quot;last common ancestors&quot; through a hominid fossil from approx. 1.6 million years later than those ancestors. Nobody knows what the common ancestor was like, but it seems reasonable to assume that it was more primitive than its descendants. Ardi was already a hominid, even if she was not as advanced as Australopithecus. The fact that she was different from modern chimps (which for all we know may also have evolved) and followed a different evolutionary path is surely only to be expected if the split had taken place 1.6 million years earlier. So what&apos;s new?-I like your point that apes didn&apos;t need huge brains to survive, but isn&apos;t that precisely how evolution works? The earliest living things didn&apos;t need eyes, legs, sexual organs to survive, but each innovation that bestowed any sort of advantage was preserved by natural selection. The old organisms often continue to survive (think of bacteria), while the new organisms progress. So although the huge brain was not a necessity, once it was there ... just like eyes, legs, sexual organs ... it turned out to be very useful. It survived, and it developed, while the less brainy apes continued to go their own way. In any case, Ardi didn&apos;t have a huge brain. Nor did Lucy. Their brains were more chimp-sized than human-sized. Couldn&apos;t that fit in with the idea that they still retained features inherited from a common ape-like ancestor? -As for &quot;different in kind&quot;, our brain directs our movements, actions, reactions, perceptions in the same way as that of the apes. But ours is bigger, more complex, more versatile. &quot;More&quot; = degree, not kind, but I can&apos;t see that the distinction matters unless you want to discount evolution altogether (which I know you don&apos;t) and defend the religious claim that man is a special creation. However, if you believe in a Creator, you can argue that each evolutionary step forward is God making progress towards his ultimate invention: the thinking machine that is man. With the apes he got pretty close, but there was still something missing....so he fiddled with the pelvis, the hands, and above all the brain till he got us. Or you can say he set up the programme for it all to happen. But this scenario also has apes and hominids splitting from a primitive unknown common ancestor, and evolving their own separate ways, with the hominids developing eventually into us. And so, in conclusion, I still don&apos;t see how Ardi ... as one of the evolving hominid line ... disproves Darwin.

Evolution

by David Turell @, Saturday, October 17, 2009, 03:23 (5312 days ago) @ dhw

&#13;&#10;> &quot;Ar. Ramidus thus indicates that the last common ancestors of humans and African apes were not chimpanzee-like and that both hominids and extant African apes are each highly specialized, but through very different evolutionary pathways.&quot;&#13;&#10;> &#13;&#10;> Forgive me if I continue to go my own ape-like way, but there are things that remain unclear to me. I don&apos;t understand how one can draw conclusions about the &quot;last common ancestors&quot; through a hominid fossil from approx. 1.6 million years later than those ancestors. Nobody knows what the common ancestor was like, but it seems reasonable to assume that it was more primitive than its descendants. Ardi was already a hominid, even if she was not as advanced as Australopithecus. The fact that she was different from modern chimps (which for all we know may also have evolved) and followed a different evolutionary path is surely only to be expected if the split had taken place 1.6 million years earlier. So what&apos;s new?-The expectation was that the common ancestor was more ape-like, following Darwin&apos;s suppositions. Ardi is more &apos;advanced&apos; than was expected. The common ancestor may be further back that 6 million years with this finding about Ardi. The fork in the road at great,great, great,great Granddad is probably not a Y, but more like a T with the two lines taking off at 180 degrees from each other.&#13;&#10;> &#13;&#10;>Ardi didn&apos;t have a huge brain. Nor did Lucy. Their brains were more chimp-sized than human-sized. Couldn&apos;t that fit in with the idea that they still retained features inherited from a common ape-like ancestor?-The reason for the same sizes is the brain increase in size was one of the last things to happen in the evolutionary development of humans.&#13;&#10;> &#13;&#10;> However, if you believe in a Creator, you can argue that each evolutionary step forward is God making progress towards his ultimate invention: the thinking machine that is man. With the apes he got pretty close, but there was still something missing....so he fiddled with the pelvis, the hands, and above all the brain till he got us. Or you can say he set up the programme for it all to happen. But this scenario also has apes and hominids splitting from a primitive unknown common ancestor, and evolving their own separate ways, with the hominids developing eventually into us. And so, in conclusion, I still don&apos;t see how Ardi ... as one of the evolving hominid line ... disproves Darwin.-Darwin thought we came from apes. He didn&apos;t know any better. Your proposal, believing in a Creator, that God possibly arranged the whole thing, is a possibility. If pre-hominids are the direct line to humans, with apes as an offshoot, it at least looks like pre-planning, not accidental &apos;chance mutation/ natural selection&apos;. As complex as the DNA mechanism is turning out to be, is part of what convinces me that there is a UI behind it all. I&apos;ve stated many times evolution occurred, but I am convinced, and this new Ardi evidence convinces me further that evolution is pre-planned in the multi-layered setup of DNA, RNA, histone control, epigenetics with methylation, and so forth. It gets complexer and complexer, meaning chance is much less likely.

Evolution

by David Turell @, Sunday, October 18, 2009, 14:13 (5311 days ago) @ David Turell

I&apos;ve stated many times evolution occurred, but I am convinced, and this new Ardi evidence convinces me further that evolution is pre-planned in the multi-layered setup of DNA, RNA, histone control, epigenetics with methylation, and so forth. It gets complexer and complexer, meaning chance is much less likely.-Junk DNA is disappearing, as this new study shows, which means more layers of genetic activity adding to the complexity we see:-http://www.physorg.com/news174661464.html

Evolution

by David Turell @, Thursday, October 08, 2009, 13:59 (5321 days ago) @ xeno6696
edited by unknown, Thursday, October 08, 2009, 14:28

I&apos;ve noted in the past that living protein molecules are enormous and specifically folded. This makes it very difficult to analyze them. Crystalography was used for DNA and now has uncovered the general shape of the proteins that make the ribosome, the organelle that makes protein in the cells following instructions from RNA messenger molecules. Three folks just got the Nobel for their work. Look at the snapshot of the ribosome:-http://www.nature.com/news/2009/091007/full/news.2009.981.html-The histones, molecules that shepherd DNA are also able to create epigenetic effects through their control of gene expression.This article about new findings explain some of their functions.-http://www.physorg.com/news174138276.html

Evolution

by xeno6696 @, Sonoran Desert, Thursday, October 08, 2009, 18:25 (5321 days ago) @ David Turell

I&apos;ve noted in the past that living protein molecules are enormous and specifically folded. This makes it very difficult to analyze them. Crystalography was used for DNA and now has uncovered the general shape of the proteins that make the ribosome, the organelle that makes protein in the cells following instructions from RNA messenger molecules. Three folks just got the Nobel for their work. Look at the snapshot of the ribosome:&#13;&#10;> &#13;&#10;> http://www.nature.com/news/2009/091007/full/news.2009.981.html&#13;&#10;> &#13;&#10;> The histones, molecules that shepherd DNA are also able to create epigenetic effects through their control of gene expression.This article about new findings explain some of their functions.&#13;&#10;> &#13;&#10;> http://www.physorg.com/news174138276.html-I did enough biochem work to have a decent working knowledge of ribosomes. Several antibiotics (including nitrofurantoin) work by attacking these little translation centers. If you can&apos;t transcript, you can&apos;t survive...

--
\"Why is it, Master, that ascetics fight with ascetics?\"

\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"

Evolution

by David Turell @, Monday, September 28, 2009, 14:09 (5331 days ago) @ David Turell
edited by unknown, Monday, September 28, 2009, 14:15

Here is an article on speciation. In stickleback fish, a new aggressive male form has appeared, The Y chromosome having changed by fusing with another chromosome: -http://www.nature.com/news/2009/090927/full/news.2009.954.html-The authors conclude this is a totally new species, becasue the ladies from the former fish types don&apos;t want to mate with these guys. As a minoror behavioral change I call it a new sub-type, not a full species change.-And another view of how the brain has constant background noise, and how we tune in, by damping down the background:-http://www.sciencedaily.com/releases/2009/09/090923121447.htm

Evolution

by David Turell @, Friday, October 01, 2010, 23:06 (4962 days ago) @ David Turell

Nature has a new article on how often &apos;good&apos; mutation can really offer a beneficial change. The result of fruit fly work is that it is NOT very often that beneficial results occur.-http://www.nature.com/nature/journal/v467/n7315/edsumm/e100930-09.html

Evolution

by Balance_Maintained @, U.S.A., Saturday, October 02, 2010, 05:42 (4962 days ago) @ David Turell

It&apos;s ok. The evolutionist are quite a tenacious bunch. They will say that there just wasn&apos;t enough time, or the right pressures, or right diet to facilitate the change and that the experiment proves nothing. After all, they work with a time line of some 4.5 billion years, even though it wouldn&apos;t have been possible for the earth to sustain life for a large portion of that.-The only way to disprove evolution in a way that is final and undeniable is to prove that speciation, from one order to another, can not occur. (i.e. fish to bird, reptile to bird, ape to human, etc)

Evolution

by dhw, Friday, October 08, 2010, 15:21 (4956 days ago) @ Balance_Maintained

RICHARD DAWKINS (on being asked which piece of science everyone should know):&#13;&#10;The unity of life that comes about through evolution, since we&apos;re all descended from a single common ancestor. It&apos;s almost too good to be true, that on one planet this extraordinary complexity of life should have come about by what is pretty much an intelligible process.-I&apos;m a little surprised that no-one has taken this up, so I&apos;ll do so myself in the hope of a few enlightening comments. I love the &quot;unity of life&quot;, which coincides with various gentle philosophies and by extension demands compassion for our fellow creatures. That is my only tick for Dawkins.-&quot;[...] we&apos;re all descended from a single common ancestor&quot;. This is stated as a fact, whereas even Darwin talked of life &quot;having been originally breathed by the Creator into a few forms or one&quot; (the Creator was not mentioned in the first edition). Most theists and atheists do believe, however, that at some point life began, just as at some point the planet Earth began. This leaves us with the following alternatives:-1)&#9;All the forms we now know developed spontaneously from a single original self-assembled mechanism with the potential for constant adaptation (changing environments) and innovation (new organs). (The Dawkins brand of faith.)&#13;&#10;2)&#9;Different mechanisms spontaneously put themselves together at the same time or at different times (multiple forms of abiogenesis), with different potentials for adaptation and innovation.&#13;&#10;3)&#9;A universal intelligence created all forms of life separately (orthodox Creationism).&#13;&#10;4)&#9;A UI created certain general categories of life separately, with the potential for further development and variation (Creationism incorporating evolution).&#13;&#10;5)&#9;A UI created a single mechanism which allowed potentially for constant adaptation and innovation. &#13;&#10;6)&#9;A UI keeps making things up as it goes along.-Any hot favourites here? Any other options? I do believe that evolution happened, i.e. that different forms of life are descended from other forms. But like Tony, I&apos;m not sure how one species can turn into another. Nor do I understand how and why innovations come about, bearing in mind the enormous complexity involved if, even in their most rudimentary form, they are to work (if they don&apos;t, they won&apos;t survive). My list of alternative and, to my sceptical eyes, equally unlikely origins, and these gaps in my understanding, suggest to me that all this is not even remotely what Dawkins calls &quot;pretty much an intelligible process&quot;.

Evolution

by Balance_Maintained @, U.S.A., Friday, October 08, 2010, 18:28 (4956 days ago) @ dhw

1)&#9;All the forms we now know developed spontaneously from a single original self-assembled mechanism with the potential for constant adaptation (changing environments) and innovation (new organs). (The Dawkins brand of faith.)&#13;&#10;> 2)&#9;Different mechanisms spontaneously put themselves together at the same time or at different times (multiple forms of abiogenesis), with different potentials for adaptation and innovation.&#13;&#10;> 3)&#9;A universal intelligence created all forms of life separately (orthodox Creationism).&#13;&#10;> 4)&#9;A UI created certain general categories of life separately, with the potential for further development and variation (Creationism incorporating evolution).&#13;&#10;> 5)&#9;A UI created a single mechanism which allowed potentially for constant adaptation and innovation. &#13;&#10;> 6)&#9;A UI keeps making things up as it goes along.-&#13;&#10;Number 1 & 2 I have completely given up as a near certain mathematical impossibility. The jury is still out on 3-6. Unfortunately, &apos;E.T did it&apos; brings us ultimately back to 3-6, so it is automatically discounted. My personal view however is a combination of 4 & 5. I only say it is a combination because I like the the &apos;single mechanism&apos; statement which seems to strike a chord with my view on any potential UI.

Evolution

by David Turell @, Friday, October 08, 2010, 21:12 (4956 days ago) @ dhw

&#13;&#10;> 1)&#9;All the forms we now know developed spontaneously from a single original self-assembled mechanism with the potential for constant adaptation (changing environments) and innovation (new organs). (The Dawkins brand of faith.)&#13;&#10;> 2)&#9;Different mechanisms spontaneously put themselves together at the same time or at different times (multiple forms of abiogenesis), with different potentials for adaptation and innovation.&#13;&#10;> 3)&#9;A universal intelligence created all forms of life separately (orthodox Creationism).&#13;&#10;> 4)&#9;A UI created certain general categories of life separately, with the potential for further development and variation (Creationism incorporating evolution).&#13;&#10;> 5)&#9;A UI created a single mechanism which allowed potentially for constant adaptation and innovation. &#13;&#10;> 6)&#9;A UI keeps making things up as it goes along.-&#13;&#10;The best sense is made by knowing how evollution developed. There were one-celled forms until shortly before the Cambrian Explosion when mutlcellular froms developed with different body parts. The Ediacarans and Bilatarians were very simple in construction. Therefore life started with unicellar forms, one type, the Archaea, and advanced after 3.2 billion years. Choice No. 1. The advance was mediated in DNA which had coding to guide the advance with the help of natural selection, as the Earth also evolved with differing climates and different arrangement of the land masses. That is Choice 5. Nothing else fits. In comparative anatomy everything changes slightly off a main plan, but is consistent. A horse hoof is a toe, compared to a bear, an elephant or a human. A UI dithering along as in 6 would not be so consistent.-In summary 1 and 5.

Evolution

by dhw, Saturday, October 09, 2010, 09:07 (4955 days ago) @ David Turell

DAVID: The best sense is made by knowing how evollution developed. There were one-celled forms until shortly before the Cambrian Explosion when mutlcellular froms developed with different body parts. The Ediacarans and Bilatarians were very simple in construction. Therefore life started with unicellar forms, one type, the Archaea, and advanced after 3.2 billion years. Choice No. 1. The advance was mediated in DNA which had coding to guide the advance with the help of natural selection, as the Earth also evolved with differing climates and different arrangement of the land masses. That is Choice 5. Nothing else fits. In comparative anatomy everything changes slightly off a main plan, but is consistent. A horse hoof is a toe, compared to a bear, an elephant or a human. A UI dithering along as in 6 would not be so consistent.&#13;&#10;In summary 1 and 5.-There is some sort of misunderstanding here. No. 1 and No. 5 are identical, except that No. 1 is without God (a &quot;self-assembled mechanism&quot;), and No. 5 is with God.-I have a problem with the leap from one-celled forms to multicellular forms with different body parts. Why and how would unicellular forms, which continued to survive as they were, also evolve after all that time into these new forms? &quot;Different body parts&quot; raises the whole question of innovation. If you are going to start with archaia and finish with us, you have to account for the vast range of new and enormously complex organs, systems, connections, none of which were needed by the original archaia or bacteria for their survival.-The structures we share with the rest of the animal kingdom are clear, and to me represent the best evidence we have that there are common ancestors, but we are all a long, long way down the line. It&apos;s the gap in your account between the original forms and your &quot;shortly before the Cambrian Explosion&quot; that throws up so many unanswered (unanswerable?) questions. -Many thanks for the brilliant article on antibodies and germ cells that you drew our attention to under &quot;Complexity of Gene Codes&quot;. The intricacies of these codes are mind-boggling, and not unrelated to the point I have raised above.

Evolution

by David Turell @, Saturday, October 09, 2010, 14:37 (4955 days ago) @ dhw

&#13;&#10;> There is some sort of misunderstanding here. No. 1 and No. 5 are identical, except that No. 1 is without God (a &quot;self-assembled mechanism&quot;), and No. 5 is with God.-I assumed a UI in #1.&#13;&#10;> &#13;&#10;> I have a problem with the leap from one-celled forms to multicellular forms with different body parts. Why and how would unicellular forms, which continued to survive as they were, also evolve after all that time into these new forms? &quot;Different body parts&quot; raises the whole question of innovation. If you are going to start with archaia and finish with us, you have to account for the vast range of new and enormously complex organs, systems, connections, none of which were needed by the original archaia or bacteria for their survival.-I don&apos;t have to account for anything. You have described the enormous problem the Cambrian Explosion presents to the Darwin Theory. Just how did that work? Not by chance mutation and nadtural selection. It had to be by an epigenetic mechanism driving the changes.&#13;&#10;> &#13;&#10;> The structures we share with the rest of the animal kingdom are clear, and to me represent the best evidence we have that there are common ancestors, but we are all a long, long way down the line. It&apos;s the gap in your account between the original forms and your &quot;shortly before the Cambrian Explosion&quot; that throws up so many unanswered (unanswerable?) questions.-Yes it does!!

Evolution

by David Turell @, Saturday, October 09, 2010, 16:32 (4955 days ago) @ David Turell

&#13;&#10;> > The structures we share with the rest of the animal kingdom are clear, and to me represent the best evidence we have that there are common ancestors, but we are all a long, long way down the line. It&apos;s the gap in your account between the original forms and your &quot;shortly before the Cambrian Explosion&quot; that throws up so many unanswered (unanswerable?) questions.&#13;&#10;> &#13;&#10;> Yes it does!!-One of the leading theories for the Cambrian Explosion is a dramatic increase in oxygen which was in low concentration before the CE. Now proven:-http://www.sciencedaily.com/releases/2010/10/101008121348.htm

Evolution

by BBella @, Saturday, October 09, 2010, 21:15 (4955 days ago) @ dhw

&#13;&#10;> I have a problem with the leap from one-celled forms to multicellular forms with different body parts. Why and how would unicellular forms, which continued to survive as they were, also evolve after all that time into these new forms? &quot;Different body parts&quot; raises the whole question of innovation. If you are going to start with archaia and finish with us, you have to account for the vast range of new and enormously complex organs, systems, connections, none of which were needed by the original archaia or bacteria for their survival.&#13;&#10;> -I think this is where dark matter comes into play, dhw. It&apos;s why anything is what it was and what it is. The push and the pull, give and take, seen and unseen, in and out, etc. The exchange/play between what IS; light matter (that which we can see) and dark matter (that which we cannot). Both hold the keys to all our unanswered questions. As long as science focus only on the light they will always get only half the story. -Of course, science has begun to peer into the dark and has even named what they found (dark matter). But since mainstream science still fear things called spirit/chi etc., they stay far from anything of that nature. But some have come to accept those names and even taken steps where science has feared to tread. -But, in the long run, it is probably best most of science keep doggin the same old standards. Perchance one day they will stumble in the darkness and name what they stumbled upon with their own language, calling something already named long ago something else.

Evolution

by David Turell @, Monday, October 11, 2010, 18:47 (4953 days ago) @ BBella

A poem from Tom Graffagnino:-&#13;&#10;....-&quot;As Luck Would Have It&quot;&#13;&#10; -There are some who like to tell us&#13;&#10;Just how all this came to be:&#13;&#10;&apos;Twas a &quot;Quantum Fluctuation&quot;&#13;&#10;Just a &quot;burp&quot; of Gravity! -Yes, we all came out of Nowhere...&#13;&#10;From a mindless Fluke of Chance.&#13;&#10;From a Big-Bang Gaseous Nothing&#13;&#10;Via Empty Happenstance! -They can&apos;t say that it was &quot;magik&quot;,&#13;&#10;(But it&apos;s mighty close to that...)&#13;&#10;&quot;Stuff&quot; just popped into existence,&#13;&#10;Like a rabbit from a hat! -Then by Random Accidentals&#13;&#10;So much &quot;Info&quot; bumped along,&#13;&#10;&apos;Until... by &apos;n&apos; by... it happened!&#13;&#10;Man invented Right and Wrong! -Then by Natural Selection,&#13;&#10;Further progress soon was made...&#13;&#10;Evo-Man just deconstructed&#13;&#10;That Foundation he had laid. -Right and Wrong?...How antiquated!&#13;&#10;How bourgeois!...How gauche!...How crude!&#13;&#10;What a travesty of Justice!&#13;&#10;What a wretched attitude! -So..., Voila!... Friend, there you have it!&#13;&#10;Scientific Truth be told!&#13;&#10;Conjured up by Nature&apos;s Brightest...&#13;&#10;The Consensus of the Polled. -.... -I was once a Doubting Thomas,&#13;&#10;But then Science proved me wrong!&#13;&#10;Now I&apos;m sure there is No Meaning...&#13;&#10;And my Faith in that is strong! -I was once a die-hard Skeptic!&#13;&#10;But it&apos;s all now crystal clear! www.tomgraffagnino.com/as-luck-would-have-it&#13;&#10;Yes! The evidence confirms it!

Evolution

by David Turell @, Tuesday, October 12, 2010, 01:26 (4952 days ago) @ David Turell

The largest genome yet found 50 times larger than human, and it is a liability:-http://news.sciencemag.org/sciencenow/2010/10/scienceshot-biggest-genome-ever.html-The amoeba&apos;s genome is slightly longer than the human.

Evolution

by dhw, Tuesday, October 12, 2010, 15:27 (4952 days ago) @ dhw

When we talk of evolution, we tend to talk about separate categories: bacteria, plants, animals, us. Under &quot;The Mind of God&quot; Tony has raised the immensely important point of the great chain that binds them all together. Without bacteria no plants, without plants no food for animals, without animals no us. But, to put it simply, the evolution of food doesn&apos;t produce animals. Similarly, conditions just right for life will not, so far as we know, produce life. And so when we talk of the complexity of the genome, or the fine tuning of the universe, as being too great to attribute to chance, perhaps we should also add the complexity of the ecosystem, in which different elements appear to have come to life separately in such a manner that they are all indispensable to one another. -My thanks to Tony for raising this point. Thanks also to David for the splendid poem, the last line of which unfortunately got cut off: &#13;&#10;&quot;And so that&apos;s the Word from here!&quot;

Evolution

by dhw, Monday, October 25, 2010, 12:47 (4939 days ago) @ dhw

An article in yesterday&apos;s Sunday Times reports on a new theory: METEOR BLASTS LED TO EXPLOSION OF LIFE, though as usual the sensational certainty of the headline is not borne out by the article. About 470 mya the Earth was bombarded with meteorites, and afterwards &quot;the fossil record shows that the number of life forms soared.&quot; Ted Nield, editor of Geoscientist, has written a book called Incoming! and says the meteorites &quot;may have been responsible for the single greatest increase in biological diversity since the origin of complex life.&quot; Nield&apos;s book is partly based on the work of Birger Schmitz, a professor of bedrock geology, who says: &quot;The theory is controversial because most scientists believe that meteorite impacts cause extinction.&quot; The theory is that the impacts changed the climate and geology of the Earth, and so species &quot;had to adapt rapidly to big changes or go extinct.&quot; The Cambrian explosion had taken place about 80 million years earlier, but evolution appears to have paused until the new shock. The article concludes that at the time, &quot;the most advanced forms of life were primitive jawless fish and squid-like cephalopods, mostly living in shallow seas. Something influenced evolution ... and meteorites could have been the cause.&quot;-If drastic changes to the environment genuinely do coincide with a new diversity of life forms ... though I wonder just how reliable the data are ... it doesn&apos;t seem unreasonable to assume that there is a causal link. If there is, then the driving force behind the creation of new species would appear to be adaptation ... &quot;species had to adapt rapidly [...] or go extinct&quot;. (Natural selection only comes into play when species exist). However, perhaps our scientists could explain why adaptation should lead to NEW species rather than merely variations within old species.

Evolution

by David Turell @, Friday, October 29, 2010, 18:15 (4935 days ago) @ dhw

Arguments about evolution point to the human retina and its physical backwards arrangement. The octopus eye looks like it should work better bercause all the layers are in their &apos;proper&apos; place. Now physicochemical molecules are found that improve visikon in mammals. Physical design is no place to start arguments, when the biochemistry is still being discovered.-http://f1000.com/4242997?key=lbszbfynrl77lbp

Evolution

by David Turell @, Monday, November 01, 2010, 18:46 (4932 days ago) @ David Turell

The evolutionist scientist famous for his RED Queen name for his theory of the appearance of sex, Leigh van Valen, has died:-http://www.nytimes.com/2010/10/31/us/31valen.html?pagewanted=1&_r=2&ref=science

Evolution Math for Matt

by David Turell @, Tuesday, November 02, 2010, 00:56 (4931 days ago) @ David Turell

Once again an article for Matt: Wilf has calculus formulas to estimate probabilities in time theoretically for needed mutations. Reasonable or not?:-http://arxiv.org/abs/1010.5178-The PDF file is free.

Evolution Math for Matt

by David Turell @, Tuesday, August 23, 2011, 21:54 (4637 days ago) @ David Turell

An article discussing calculating probabilites for mutations, evolution, etc. Pagliucci&apos;s objections are given. It is a clear presentation:-&#13;&#10;http://scienceblogs.com/evolutionblog/2011/08/probability_and_evolution.php?utm_source=sbhomepage&utm_medium=link&utm_content=channellink-And here is an answer from an ID author. Id folks like to use probability calculations as a way to refute Darwin&apos;s concept of evolution.-http://www.uncommondescent.com/intelligent-design/evolution-and-probabilities-a-response-to-jason-rosenhouse/-From my own standpoint, after many discussions with Matt re math considerations for probability calculations, I prefer to look at complexity. And not just the argument about irreducible complexity. I&apos;ll shortly discuss James Shapiro&apos;s book, &apos;Evolution&apos;, as I finish it, but the complexities he describes change the paradigm of Neo-Darwinism completely. Life&apos;s processes, and control feedbacks are so inter-twined that a blind searching mechanism which is finally mediated by natural selection does not seem capable of such a creation.

Evolution Math for Matt

by dhw, Wednesday, August 24, 2011, 10:30 (4636 days ago) @ David Turell

DAVID: An article discussing calculating probabilities for mutations, evolution, etc. Pagliucci&apos;s objections are given. It is a clear presentation:&#13;&#10;-http://scienceblogs.com/evolutionblog/2011/08/probability_and_evolution.php?utm_source=...-And here is an answer from an ID author. Id folks like to use probability calculations as a way to refute Darwin&apos;s concept of evolution.-http://www.uncommondescent.com/intelligent-design/evolution-and-probabilities-a-respons...-From my own standpoint, after many discussions with Matt re math considerations for probability calculations, I prefer to look at complexity. And not just the argument about irreducible complexity. I&apos;ll shortly discuss James Shapiro&apos;s book, &apos;Evolution&apos;, as I finish it, but the complexities he describes change the paradigm of Neo-Darwinism completely. Life&apos;s processes, and control feedbacks are so inter-twined that a blind searching mechanism which is finally mediated by natural selection does not seem capable of such a creation.-I shan&apos;t pretend to understand all the technicalities of these exchanges, but when the subject is innovation, the atheist evolutionist always falls back on Natural Selection as the get-out-of-jail card. That is why it is so essential to settle on a definition of NS. Matt will disagree, but all my references (books and websites) still define it in terms of the process that decides which adaptations/innovations will survive, i.e. those that best enable organisms to cope with their environment. NS, according to this still current definition, does not CREATE the innovations. How do you select from something that doesn&apos;t yet exist?-The one fact we can be sure of is that these innovations occurred. ID-ers claim that they are too complex to have occurred by chance, in which case either a UI intervened in the evolutionary process, or he devised a mechanism already capable of these immensely complex, &quot;intertwined&quot; operations. The atheist argument has to substitute chance for a UI: the innovations are the result of random mutations (Darwinism), the survival of which is determined by Natural Selection (not random), and chance created the original mechanism that was capable of these operations. Both sides may accept that the environment influences change, but the extent to which the changes are adaptations or innovations remains unclear, and in any case this has no bearing on the &quot;probability&quot; of chance creating the original mechanisms that enable adaptation.-As for &quot;probability&quot;, as there are so many imponderables and no precedents, I can see no reliable basis for anyone&apos;s calculations. It all comes down to what you think is credible.

Evolution: What are mutations worth?

by David Turell @, Saturday, November 06, 2010, 22:01 (4927 days ago) @ David Turell

Not much if the following research on salmonella is confirmed. The mutations did no good, neutral, and at times had small bad effects.-&#13;&#10;http://www.physorg.com/news/2010-11-unexpectedly-small-effects-mutations-bacteria.html-As more and more elegant research is done on the genome, the less is the Darwin Theory supported. Evolution occurred, but how is now becoming a major question.

Evolution: Punctuated Equilibrium and Geology

by David Turell @, Friday, November 12, 2010, 14:48 (4921 days ago) @ David Turell

Another article objecting to Darwinism. Geology shows upheaval and then stasis, fiting Gould&apos;s theory:-http://www.physorg.com/news/2010-11-darwin-theory-gradual-evolution-geological.html

Evolution

by dhw, Monday, January 03, 2011, 22:54 (4868 days ago) @ David Turell

DAVID: Evolution occurred, but how is now becoming a major question.-An article in The Guardian while I was away reported amazing fossil finds in south-west China dating from after the mass extinction 252 million years ago at the end of the Permian period, when about 96% of marine species and 70% of land vertebrates were wiped out. (I wonder how they get such figures). The following statements leap off the page:-&quot;The loss of so many species at the end of the Permian gave new creatures the chance to thrive.&quot;-&quot;Part of it is a rebuilding of the ecosystem from the grim survivors, but there are also opportunities for new groups. There were no marine reptiles before the extinction but this gave them a way in.&quot;-My question is: where the heck did these new creatures spring from?

Evolution

by David Turell @, Tuesday, January 04, 2011, 00:49 (4868 days ago) @ dhw

DAVID: Evolution occurred, but how is now becoming a major question.&#13;&#10;> &#13;&#10;> An article in The Guardian while I was away reported amazing fossil finds in south-west China dating from after the mass extinction 252 million years ago at the end of the Permian period, when about 96% of marine species and 70% of land vertebrates were wiped out. (I wonder how they get such figures). The following statements leap off the page:&#13;&#10;> &#13;&#10;> &quot;The loss of so many species at the end of the Permian gave new creatures the chance to thrive.&quot;&#13;&#10;> &#13;&#10;> &quot;Part of it is a rebuilding of the ecosystem from the grim survivors, but there are also opportunities for new groups. There were no marine reptiles before the extinction but this gave them a way in.&quot;&#13;&#10;> &#13;&#10;> My question is: where the heck did these new creatures spring from?-Novel forms that became the 37 animal phyla appeared in the Cambrian Explosion appeared by that same mechansim, whatever it is.

Evolution: Single cell to multicellular

by David Turell @, Tuesday, January 04, 2011, 18:25 (4868 days ago) @ David Turell

&#13;&#10;> > My question is: where the heck did these new creatures spring from?&#13;&#10;> &#13;&#10;> Novel forms that became the 37 animal phyla appeared in the Cambrian Explosion appeared by that same mechansim, whatever it is.-Look at the article &quot;From Simple to Complex&quot;. The genomics studies are finding many genes in single-celled organisms that prepare for multicellularity. I still view this as pre-planning in DNA by the UI.-http://www.the-scientist.com/2011/1/1/38/1/

Evolution: Single cell to multicellular

by David Turell @, Thursday, January 06, 2011, 20:28 (4866 days ago) @ David Turell

Look at the article &quot;From Simple to Complex&quot;. The genomics studies are finding many genes in single-celled organisms that prepare for multicellularity. I still view this as pre-planning in DNA by the UI.&#13;&#10;> &#13;&#10;> http://www.the-scientist.com/2011/1/1/38/1/-&#13;&#10;Another genome article on the sponge, which turns out to be a very complex genome, 18,000 genes, very much like US, with many genes for future use. Genes for nerves, and the sponge has none! Pre-planning?-http://f1000.com/4788960?key=q7cvxd7y9w7mcc6

Evolution: Single cell to multicellular

by dhw, Friday, January 07, 2011, 11:55 (4865 days ago) @ David Turell

I&apos;m still trying to get my head round the article David has drawn our attention to, concerning the transition from unicellularity to multicellularity:-http://www.the-scientist.com/2011/1/1/38/1/-Some of the scientific details are outside my range of comprehension, but the implications of the section headed &quot;complexity breeds cooperation&quot; could hardly be clearer. &quot;An incredible amount of cooperation is required for individual cells to come together and function as one, and with Natural Selection acting at the level of the individual cell, there will be significant evolutionary pressure to cheat the system and sabotage the success of the multicellular whole.&quot;-Regardless of the unknown origin of single-celled organisms, why and how did these individual cells come together in the first place? And since they took on different functions (the author compares the multicellular organism to colonies of insects), why and how did they do so? The implication seems to be that individual cells have their own intelligence as well as the ability to combine and adapt ... reminiscent of BBella&apos;s contention that intelligence is in all things. -The fact that single-celled organisms contain genes common to multicelled organisms (revolutionizing previous views of fungus/animal evolution, but surely also providing important evidence that later forms of life did evolve directly from earlier forms) is viewed by David as evidence of pre-planning by a UI. Maybe, but if the ultimate goal was humans, as you and Tony believe, why the following? &quot;...such transitions are not always smooth, as conflict can arise when selfish mutations result in cheaters that attempt to benefit from the group without contributing their fair share.&quot; Quite apart from the wonderful parallel this presents to human society, it suggests to me that if there was pre-planning, it stopped at the stage of allowing infinite combinations. Once the mechanism for combining and adapting is in place, there seems to be a gigantic free-for-all. Hence the vast variety of species, extinctions, innovations*** ... anything is possible, and natural selection simply decides which combinations are to survive. Were humans inevitable? I don&apos;t see why. And although we&apos;re presumably going through a period of evolutionary stasis now, nor do I see why in the next billion years or so there should not be more environmental changes and mass extinctions, after which these intelligent cells may again come up with new combinations, perhaps more advanced than us humans. Though we may not be around to find out how they do it! As the article puts it: &quot;The origins of this intriguing phenomenon remain shrouded in mystery.&quot;-*** My thanks again to David for his post (6 January at 15.10) summarizing a study which again cannot explain the mechanism for innovation. (I don&apos;t know why Natural Selection can even be considered as a source, since it doesn&apos;t originate anything.) We know that all of us animals do actually unite a variety of &quot;intelligent&quot; systems that function independently of our own volition (the senses, digestion, circulation, immune system etc.). So maybe the concept of intelligent cells forming new combinations can at least give us a different angle of approach from the highly unsatisfactory one of random mutations, even if it still doesn&apos;t offer an explanation.

Evolution: Single cell to multicellular

by David Turell @, Saturday, January 08, 2011, 15:31 (4864 days ago) @ dhw

&#13;&#10;> *** My thanks again to David for his post (6 January at 15.10) summarizing a study which again cannot explain the mechanism for innovation. (I don&apos;t know why Natural Selection can even be considered as a source, since it doesn&apos;t originate anything.) We know that all of us animals do actually unite a variety of &quot;intelligent&quot; systems that function independently of our own volition (the senses, digestion, circulation, immune system etc.). So maybe the concept of intelligent cells forming new combinations can at least give us a different angle of approach from the highly unsatisfactory one of random mutations, even if it still doesn&apos;t offer an explanation.-Here is an article from the pre-Cambrian fossil fields in China, studying the development of exo-skeletons in Ediacaran fossils, which then led to endo-skeletization in the Cambrian Explosion. The article does not explain the Cambrian Explosion, really, nothing does, but this is one of the important steps.-http://www.physorg.com/news/2011-01-skeletons-pre-cambrian-closet.html

Evolution: How do genes create complexity

by David Turell @, Thursday, January 06, 2011, 15:10 (4866 days ago) @ David Turell

&#13;&#10;> > My question is: where the heck did these new creatures spring from?&#13;&#10;> &#13;&#10;> Novel forms that became the 37 animal phyla appeared in the Cambrian Explosion appeared by that same mechansim, whatever it is.-A new study of how genes derive complex organisms does not find the mechanisms:-The paper concludes that:&#13;&#10;Gene duplication and subsequent evolutionary divergence certainly adds to the size of the genome and in large measure to its diversity and versatility. However, in all of the examples given above, known evolutionary mechanisms were markedly constrained in their ability to innovate and to create any novel information. This natural limit to biological change can be attributed mostly to the power of purifying selection, which, despite being relaxed in duplicates, is nonetheless ever-present. &#13;&#10;the various postduplication mechanisms entailing random mutations and recombinations considered were observed to tweak, tinker, copy, cut, divide, and shuffle existing genetic information around, but fell short of generating genuinely distinct and entirely novel functionality.&#13;&#10;The author concludes his review by offering the following advice:&#13;&#10;Gradual natural selection is no doubt important in biological adaptation and for ensuring the robustness of the genome in the face of constantly changing environmental pressures. However, its potential for innovation is greatly inadequate as far as explaining the origination of the distinct exonic sequences that contribute to the complexity of the organism and diversity of life. Any alternative/revision to Neo-Darwinism has to consider the holistic nature and organization of information encoded in genes, which specify the interdependent and complex biochemical motifs that allow protein molecules to fold properly and function effectively.- &#13;&#10;Research Article&#13;&#10;Is gene duplication a viable explanation for the origination of biological information and complexity?&#13;&#10;Joseph Esfandiar Hannon Bozorgmehr&#13;&#10;Article first published online: 22 DEC 2010&#13;&#10;DOI: 10.1002/cplx.20365&#13;&#10;Copyright &#194;&#169; 2010 Wiley Periodicals, Inc.&#13;&#10;Issue &#13;&#10; &#13;&#10;Complexity&#13;&#10;Early View (Articles online in advance of print)&#13;&#10;Additional Information(Show All)&#13;&#10;How to CiteAuthor InformationPublication History&#13;&#10;How to Cite&#13;&#10;Bozorgmehr, J. E. H. , Is gene duplication a viable explanation for the origination of biological information and complexity?. Complexity, n/a. doi: 10.1002/cplx.20365&#13;&#10;Author Information&#13;&#10;39 Princedom Street, Manchester M9 4GQ, United Kingdom&#13;&#10;Email: Joseph Esfandiar Hannon Bozorgmehr (bozorgmehr@hotmail.co.uk) &#13;&#10;*Correspondence: Joseph Esfandiar Hannon Bozorgmehr, 39 Princedom Street, Manchester M9 4GQ, United Kingdom&#13;&#10;Publication History

Evolution: Did epigenetics evolve?

by David Turell @, Sunday, November 14, 2010, 00:01 (4919 days ago) @ David Turell

This piece is from Uncommon Descent. Don&apos;t be alarmed. It is a good description of methylation of DNA. Ignore the fundimentalist theory as you wish. The issue remains however: Was epigenetics present at the start of life or did it evolve?&#13;&#10;How did early one-celled organisms protect themselves from sudden threats and changes, if it were not present from the beginning?-http://darwins-god.blogspot.com/2010/11/allele-specific-dna-methylation-and.html

Evolution: transition fish to land

by David Turell @, Tuesday, September 05, 2017, 00:04 (2432 days ago) @ David Turell

A strange new finding that doesn't really fit previous findings:

https://www.newscientist.com/article/2146256-weird-fish-fossil-changes-the-story-of-how...

"Fossils have revealed many of the stages in this iconic evolutionary event. The evolutionary tree of species involved in the switch from sea to land has remained stable since the late 20th century, even as new fossils have come to light.


"However, a fossil discovered in a quarry in Ningxia, north China, now threatens that stability. It was discovered in 2002 by Min Zhu at the Institute of Vertebrate Paleontology and Paleoanthropology in Beijing and Per Ahlberg at Uppsala University in Sweden.

"The fossil belongs to a new species of lobe-finned fish, named Hongyu chowi. It was about 1.5 metres long, and lived 370 to 360 million years ago.

"But when the researchers tried to fit H. chowi into the existing evolutionary tree, it didn’t fit easily.

"That’s because in some respects, H. chowi looks like an ancient predatory fish called rhizodonts. These are thought to have branched off from lobe-finned fish long before the group gave rise to four-legged land animals.

"But Ahlberg says H. chowi has aspects that look surprisingly like those seen in early four-legged animals and their nearest fishy relatives – an extinct group called the elpistostegids. These include the shoulder girdle and the support region for its gill covers.

"This implies one of two things, the researchers say. The first possibility is that H. chowi is some sort of rhizodont that independently evolved the shoulders and gill cover supports of a four-legged animal.

"Alternatively, the rhizodonts may be more closely related to the four-legged animals and the elpistostegids than we thought. But this would also imply a certain amount of independent evolution of similar features, because the rhizodonts would then sit between two groups that have many features in common – features the two groups would have had to evolve independently.

"This implies one of two things, the researchers say. The first possibility is that H. chowi is some sort of rhizodont that independently evolved the shoulders and gill cover supports of a four-legged animal.

"Alternatively, the rhizodonts may be more closely related to the four-legged animals and the elpistostegids than we thought. But this would also imply a certain amount of independent evolution of similar features, because the rhizodonts would then sit between two groups that have many features in common – features the two groups would have had to evolve independently."

Comment: Apparently more than one type of fish tried to evolve into a life on land. Appears to be an example of convergence.

Evolution: teleology and stability

by David Turell @, Saturday, September 09, 2017, 22:54 (2428 days ago) @ David Turell

A philosophic essay about the stability of life and how biology has not been approached by science as chemistry and physics are:

https://aeon.co/essays/paradoxes-of-stability-how-life-began-and-why-it-can-t-rest?utm_...

"Living things might be made of the same fundamental stuff as the rest of the material world – ‘dead’ atoms and molecules – but they do not behave in the same way at all. In fact, they seem so purposeful as to defy the materialist philosophy on which the rest of modern science was built.

"how did life on Earth actually come about? Both at the abstract level and in the particular story of our world, there seems to be a chasm between the animate and inanimate realms.

***

"The name we give to the process by which simple life emerged from inanimate matter is ‘abiogenesis’. Evolution, on the other hand, is the biological mechanism by which life branched out into Darwin’s ‘endless forms most beautiful’. Traditionally, these are viewed as quite different things: the former, one of nature’s greatest mysteries; the latter, broadly understood, thanks to Darwin. Through systems chemistry, however, they stand revealed as a single continuous progression. (my bold)

***

"Evolution exhibits an identifiable driving force, a direction if you like, and this ‘teleological’ tendency acts at both the chemical and biological stages; that is, it operates both during, as well as after, what we think of as abiogenesis. Thus the purpose-driven character of life, the very thing that seemed to distinguish biology from the rest of nature, turns out not to be unique to life after all. Its beginnings are already discernible in certain inanimate systems, provided they are replicative and able to evolve. And this driving force can be described in strictly physical terms.

"Put simply, it is nature’s drive towards greater stability – a drive that is as ubiquitous in physics as it is in biology.

***

"High entropy and low energy, however, are just one manifestation of stability. Does nature offer others? It does. It turns out that stuff can be highly persistent even when it is highly unstable energetically. Indeed, that’s precisely what we find in the world of replicators.

"Living things are low-entropy and energy-consuming, so they are unstable in the thermodynamic sense. Nevertheless, they can still be remarkably stable in the sense of persisting over time. Some replicating populations (certain bacterial strains, for example) have maintained themselves with little change over astonishing periods – millions, even a billion, years.

***

"Why do replicating molecules give rise to replicating cells? In a word: evolution. Or, in four more: replication, variation, competition, selection.

***

"In the replicative world, stability can be unrelated to energy content. Provided there is a source of metabolic energy to keep the thermodynamic books balanced, anything goes. So this is genuinely a different kind of stability.

***

" Some replicators are indeed astonishingly durable, but, crucially, DKS always remains circumstantial. Change the environmental conditions and the winner of the replicative race can change. In fact, that’s exactly what makes life so capricious and the evolutionary path largely unpredictable: the mathematics of replication forces it into a paradoxically restless search for rest.

"Why are living things so complex? Here’s another seemingly eternal riddle that we’re now in a position to answer. As many a systems chemist has learnt to his or her sorrow, the simplest molecular replicators can be quite finicky. You need fancy labs, specialised equipment and dedicated researchers to get them to replicate and, even then, it can be hit or miss. By contrast, biological replicators – living things – are extraordinarily robust.

"Consider some of the simplest life forms, bacteria. These highly complex entities can survive and prosper pretty well anywhere – some deep within the Earth, some high in the atmosphere, some in boiling water, some in nuclear reactors, no labs, equipment or human assistance required. The inordinate complexity of all living things has emerged for one reason alone – to facilitate the replicative function, thereby enhancing the stability of the replicating system.

***

"So complexity and function go hand in hand. Joyce’s RNA experiment demonstrated the first (conceptual) step on a thousand-mile journey – toward that stupendously effective (and inordinately complex) replicator, the bacterial cell.

***

"Nature’s most fundamental drive, dictated by logic itself, is toward greater stability. That drive has a thermodynamic manifestation, as expressed through the ubiquitous Second Law, but it also has a kinetic manifestation – the drive toward increasingly persistent replicators. Two mathematics, two material forms. This distinction does not trace the dividing line between living and dead matter precisely – but it does explain it, and many of the other riddles of life into the bargain."

Comment: Read the whole article. I think it is ridiculous reasoning, but he makes some reasonable observations. Highly complex bacteria are stable because of the unexplained source of the complexity they exhibit. Note my bold: origin of life and evolution are one continuous system.

Evolution: teleology and stability

by dhw, Sunday, September 10, 2017, 14:08 (2427 days ago) @ David Turell

DAVID’s comment: Read the whole article. I think it is ridiculous reasoning, but he makes some reasonable observations. Highly complex bacteria are stable because of the unexplained source of the complexity they exhibit. Note my bold: origin of life and evolution are one continuous system.

Thank you for editing the article. If you believe in evolution, then of course origin of life and evolution are one continuous system: you could hardly have evolution if one life form didn't develop from its predecessors right back to the first form(s)! But Creationists deny common descent and argue that God created different forms of life separately,in which case the process was not continuous. As for the rest, we might as well say that all matter has mental qualities that look for “stability”: another form of panpsychism.

Evolution: why try land? the eyes have it

by David Turell @, Friday, September 15, 2017, 21:12 (2422 days ago) @ dhw

A whole new theory supported by optical measurements that much better vision on land encouraged terrestrial life:

https://www.quantamagazine.org/why-did-life-move-to-land-for-the-view-20170307/?utm_sou...

"Life on Earth began in the water. So when the first animals moved onto land, they had to trade their fins for limbs, and their gills for lungs, the better to adapt to their new terrestrial environment.

"A new study, out today, suggests that the shift to lungs and limbs doesn’t tell the full story of these creatures’ transformation. As they emerged from the sea, they gained something perhaps more precious than oxygenated air: information. In air, eyes can see much farther than they can under water. The increased visual range provided an “informational zip line” that alerted the ancient animals to bountiful food sources near the shore, according to Malcolm MacIver, a neuroscientist and engineer at Northwestern University.

"This zip line, MacIver maintains, drove the selection of rudimentary limbs, which allowed animals to make their first brief forays onto land. Furthermore, it may have had significant implications for the emergence of more advanced cognition and complex planning. “It’s hard to look past limbs and think that maybe information, which doesn’t fossilize well, is really what brought us onto land,” MacIver said.

"MacIver and Lars Schmitz, a paleontologist at the Claremont Colleges, have created mathematical models that explore how the increase in information available to air-dwelling creatures would have manifested itself, over the eons, in an increase in eye size. They describe the experimental evidence they have amassed to support what they call the “buena vista” hypothesis.

***

"But once you take eyes out of the water and into air, a larger eye size leads to a proportionate increase in how far you can see.

***

" They found that there was indeed a marked increase in eye size — a tripling, in fact — during the transitional period [to land]. The average eye socket size before transition was 13 millimeters, compared to 36 millimeters after. Furthermore, in those creatures that went from water to land and back to the water — like the Mexican cave fish Astyanax mexicanus — the mean orbit size shrank back to 14 millimeters, nearly the same as it had been before.

***

"In water, a larger eye only increases the visual range from just over six meters to nearly seven meters. But increase the eye size in air, and the improvement in range goes from 200 meters to 600 meters.

***

"MacIver’s background as a neuroscientist inevitably led him to ponder how all this might have influenced the behavior and cognition of tetrapods during the water-to-land transition. For instance, if you live and hunt in the water, your limited vision range — roughly one body length ahead — means you operate primarily in what MacIver terms the “reactive mode”: You have just a few milliseconds (equivalent to a few cycle times of a neuron in the brain) to react. “Everything is coming at you in a just-in-time fashion,” he said. “You can either eat or be eaten, and you’d better make that decision quickly.”

"But for a land-based animal, being able to see farther means you have much more time to assess the situation and strategize to choose the best course of action, whether you are predator or prey. According to MacIver, it’s likely the first land animals started out hunting for land-based prey reactively, but over time, those that could move beyond reactive mode and think strategically would have had a greater evolutionary advantage. “Now you need to contemplate multiple futures and quickly decide between them,” MacIver said. “That’s mental time travel, or prospective cognition, and it’s a really important feature of our own cognitive abilities.”

"That said, other senses also likely played a role in the development of more advanced cognition. “It’s extremely interesting, but I don’t think the ability to plan suddenly arose only with vision,” said Barbara Finlay, an evolutionary neuroscientist at Cornell University. As an example, she pointed to how salmon rely on olfactory pathways to migrate upstream.

"Hutchinson agrees that it would be useful to consider how the many sensory changes over that critical transition period fit together, rather than studying vision alone. For instance, “we know smell and taste were originally coupled in the aquatic environment and then became separated,” he said. “Whereas hearing changed a lot from the aquatic to the terrestrial environment with the evolution of a proper external ear and other features.'”

Comment: Fascinating theory. Raises the issue again of why pre-whales entered the water.

Evolution: Wallaby placental activity

by David Turell @, Monday, September 18, 2017, 22:24 (2419 days ago) @ David Turell

The fetus is protected from the mother's antibodies by the mother's milk:

https://www.scientificamerican.com/article/wallaby-milk-acts-as-a-placenta-for-babies/?...

"'Wallabies are kicking over scientific conventions surrounding mammalian placentas, the organ responsible for protecting and nourishing a developing fetus. A study finds that contrary to what scientists thought previously, mother tammar wallabies (Macropus eugenii) have both a functioning internal placenta and milk that performs some of the organ’s usual roles.

***

"'marsupials develop simple, placenta-like structures during the end of pregnancy, just before the underdeveloped baby crawls from the uterus into the mother’s pouch. These placental structures, just two cell layers thick, provide oxygen, nutrients and molecular signals that drive development to the fetus while protecting it from the mother’s immune system.

"It shouldn't be surprising that marsupial placentas look different from those of other animals since even closely related species can have very different-looking placentas that perform the same functions, says Derek Wildman, an evolutionary biologist at the University of Illinois in Urbana-Champaign. “It is the most variable organ in mammals in terms of anatomy and physiology,” he says.

"Marsupial pregnancy is remarkably short for mammals of their size. Tammar wallabies, which can grow to between 6 and 9 kilograms, are pregnant for just 26.5 days — barely longer than rats. Yet the baby, or joey, spends nearly a year continuing to develop and nurse inside the mother’s pouch: a long time compared to other mammals. This developmental mismatch led researchers to suspect that the majority of a joey’s development is driven by specialized features of the mother’s milk.

***

"Baker thinks that the rapid evolution could be necessary for the placenta to effectively shield the fetus from the mother’s immune system, which treats the offspring as a foreign invader. “The placenta is evolving, trying to evade the mom, and comes up with these really bizarre strategies” — including taking liquid form in the mother marsupial’s milk, she says.

"Wildman says that the finding suggests that lactation may have evolved before eutherian placentas, as egg-laying mammals such as platypuses and echidnas lactate but do not have placentas. The egg-laying group came before marsupials and eutherians. He praises the paper, but says that the researchers could compare gene expresssion across more species than just mice and humans. A paper he published of 14 animals found that placentas did express different genes depending on the species."

Comment: These are transitional forms of mammals, but the transitions are giant gaps in physiology again unsupportive of the gradualism proposed by Darwin.

Evolution: Wallaby placental activity

by dhw, Tuesday, September 19, 2017, 11:55 (2418 days ago) @ David Turell

DAVID's comment: These are transitional forms of mammals, but the transitions are giant gaps in physiology again unsupportive of the gradualism proposed by Darwin.

Just to clarify: transitions are transitions, thus providing evidence for evolution. Although Darwin thought gradualism was essential to his theory, many evolutionary scientists disagree with him and accept that there have been saltations.

Evolution: Wallaby placental activity

by David Turell @, Tuesday, September 19, 2017, 15:01 (2418 days ago) @ dhw

DAVID's comment: These are transitional forms of mammals, but the transitions are giant gaps in physiology again unsupportive of the gradualism proposed by Darwin.

dhw: Just to clarify: transitions are transitions, thus providing evidence for evolution. Although Darwin thought gradualism was essential to his theory, many evolutionary scientists disagree with him and accept that there have been saltations.

Unexplained saltations unless God is accepted. Darwin's only contribution is common descent after life began.

Evolution: Wallaby placental activity

by dhw, Wednesday, September 20, 2017, 13:41 (2417 days ago) @ David Turell

DAVID's comment: These are transitional forms of mammals, but the transitions are giant gaps in physiology again unsupportive of the gradualism proposed by Darwin.

dhw: Just to clarify: transitions are transitions, thus providing evidence for evolution. Although Darwin thought gradualism was essential to his theory, many evolutionary scientists disagree with him and accept that there have been saltations.

DAVID: Unexplained saltations unless God is accepted. Darwin's only contribution is common descent after life began.

A huge contribution to our understanding of life’s history, since he was the one who made the theory known and acceptable to the world.

One can indeed explain saltations as being individually preprogrammed 3.8 billion years ago or dabbled by an unknown, hidden, sourceless power about which we know nothing. Or one can explain them as being due to an autonomous mechanism invented by an unknown, hidden, sourceless power about which we know nothing. Or one can explain them as being due to an autonomous mechanism that came into existence by sheer chance. All three explanations are so nebulous that one can only marvel at the faith of those who believe in one and reject the others.

Evolution: Wallaby placental activity

by David Turell @, Wednesday, September 20, 2017, 15:05 (2417 days ago) @ dhw

DAVID's comment: These are transitional forms of mammals, but the transitions are giant gaps in physiology again unsupportive of the gradualism proposed by Darwin.

dhw: Just to clarify: transitions are transitions, thus providing evidence for evolution. Although Darwin thought gradualism was essential to his theory, many evolutionary scientists disagree with him and accept that there have been saltations.

DAVID: Unexplained saltations unless God is accepted. Darwin's only contribution is common descent after life began.

dhw: A huge contribution to our understanding of life’s history, since he was the one who made the theory known and acceptable to the world.

One can indeed explain saltations as being individually preprogrammed 3.8 billion years ago or dabbled by an unknown, hidden, sourceless power about which we know nothing. Or one can explain them as being due to an autonomous mechanism invented by an unknown, hidden, sourceless power about which we know nothing. Or one can explain them as being due to an autonomous mechanism that came into existence by sheer chance. All three explanations are so nebulous that one can only marvel at the faith of those who believe in one and reject the others.

As I've pointed out in the past, you favor God two to one. Your first two proposals are God sourced. And you reject chance.

Evolution: Wallaby placental activity

by dhw, Thursday, September 21, 2017, 13:10 (2416 days ago) @ David Turell

dhw: One can indeed explain saltations as being individually preprogrammed 3.8 billion years ago or dabbled by an unknown, hidden, sourceless power about which we know nothing. Or one can explain them as being due to an autonomous mechanism invented by an unknown, hidden, sourceless power about which we know nothing. Or one can explain them as being due to an autonomous mechanism that came into existence by sheer chance. All three explanations are so nebulous that one can only marvel at the faith of those who believe in one and reject the others.

DAVID: As I've pointed out in the past, you favor God two to one. Your first two proposals are God sourced. And you reject chance.

If you find three hypotheses equally difficult to believe, it means you do not favour any of them. Nice try, though!

Evolution: teleology in biology

by David Turell @, Thursday, November 03, 2022, 20:30 (547 days ago) @ dhw

Every living organism has the purpose of survival:

https://evolutionnews.org/2022/11/a-closer-look-at-the-science-of-purpose/

"The first thing to notice is that there really cannot be a science of organisms, i.e., biology, without understanding purpose. That this fact has been so neglected is, of course, a consequence of neo-Darwinism, which purports to show that purpose and design in life are only apparent, not real. Organisms that survive simply appear to be purpose-driven because those that are not driven by purpose suffer extinction as imposed by natural selection.

***

"In biology we are dedicated to studying the behavior and physiology of all living things. Extraordinary examples of animal behavior include the 70-mile trek by some emperor penguins to feed their young, the 1,000-mile journey that sockeye salmon may navigate to return to the small stream of their birth in order to spawn and die, and the 3,000-mile annual migration of certain caribou in North America.

"Yet as a physician I am equally if not more astounded by the dazzling display of goal-attainment that takes place in every human body in every second of life. Your heart has been pumping since a time about eight months before you were born. Your kidneys filter metabolic waste and retain life-sustaining fluid and electrolytes without fail and without interruption. The hemoglobin in your red blood cells procures, transports, and delivers life-giving oxygen to every corner of your body, every second of every day. And this can only happen because your lungs expand and contract, again without fail, ceaselessly, even while you sleep. Your body cannot survive outside of a very narrow range of temperatures and fluid and electrolyte concentrations. These are assiduously and jealously monitored, adjusted, and normalized. Without this oversight, your life would come to a rapid end.

"Purpose is the sine-qua-non of life. It permeates every organism, in every ecosystem.

***

"The short answer is that biology grew up out of the physical sciences. Even Isaac Newton himself was at pains to eliminate purpose, i.e., teleology, from his science. But Newton’s motivation was entirely different from that of modern scientific atheists. Newton believed firmly in the reality of teleology and purpose, but he also believed that it was outside of the ability of the human mind to reduce God’s purposeful wisdom to scientific terms. Some 250 years after Newton, and following the success of the Industrial Revolution, 19th-century scientists began to see themselves as understanding the world without God’s help. Then along came Darwin. As we all know, he said that creatures survived and speciated based on the random and blind — that is, purposeless — actions of a thoroughly uncaring natural world. He made it all seem so simple: survival of the fittest was all there is to it.

"Today, modern science embraces Darwin, in part because biologists want to be physicists, and also because it allows them to continue to leave God out. So the myth of Darwinism, in its new guise of neo-Darwinism, endures.

***

"Realizing that, we recognize that the entire edifice of Darwin’s theory is based on a single, demonstrable falsehood. Darwin looked at the natural world and observed organisms of every kind striving to survive, competing for food, shelter, and mating privilege. This was the struggle for existence at the core of his theory.

"The struggle, however, depends on something else that Darwin didn’t see, something more fundamental. Antecedent to it is the desire to struggle, that is, to act in keeping with the organism’s purpose, to live. Only with this desire does the living thing then go out and fight for its life. The point may seem subtle but it really is not. If as we are told, life is ultimately purposeless and organisms have no innate purpose… then why struggle?

"Simply put: Teleology, the purpose-driven innate property of life itself, precedes natural selection as the primary source of agency that explains evolution. Darwinism utterly misses this elementary fact."

Comment: so, the will to survive precedes survival itself as the driving factor. Why does that will come from? Why must it exist? If the survival struggle is so hard, why struggle? what agency implanted that drive?

Evolution: teleology in biology

by dhw, Friday, November 04, 2022, 12:49 (546 days ago) @ David Turell

Teleology in biology

DAVID: Every living organism has the purpose of survival:
https://evolutionnews.org/2022/11/a-closer-look-at-the-science-of-purpose/

QUOTE: Then along came Darwin. As we all know, he said that creatures survived and speciated based on the random and blind — that is, purposeless — actions of a thoroughly uncaring natural world. He made it all seem so simple: survival of the fittest was all there is to it.

How can it be called “purposeless” when the purpose is survival? “Random” concerns the theory which you and I have long since rejected, that the process depends on random mutations, but that does not in any way remove the obvious fact that all life forms struggle to survive, and the struggle to survive constitutes the purpose of their actions!

QUOTE: "Today, modern science embraces Darwin, in part because biologists want to be physicists, and also because it allows them to continue to leave God out. So the myth of Darwinism, in its new guise of neo-Darwinism, endures.

Does he really believe that all biologists are atheists, and does he not realize that Darwin himself was an agnostic who, in later editions of ORIGIN not only makes many references to the “Creator” but also emphasizes that his theory should not “shock the religious feelings of anyone”. Even the Catholic Church has accepted that there is no intrinsic conflict between the theory of evolution and Christianity. What world is our author living in?

QUOTE: "The struggle, however, depends on something else that Darwin didn’t see, something more fundamental. Antecedent to it is the desire to struggle, that is, to act in keeping with the organism’s purpose, to live. […]

So Darwinism is purposeless because before you try to fulfil the purpose of surviving, you have to want to survive, and survival is the purpose. I reckon Darwin would have been as amazed as I am at such reasoning.

QUOTE: "Simply put: Teleology, the purpose-driven innate property of life itself, precedes natural selection as the primary source of agency that explains evolution. Darwinism utterly misses this elementary fact."

So apparently Darwin didn’t realize that although the purpose was survival, the purpose of survival was not the driving force behind evolution because the driving force was the desire to survive, which was the purpose. However, it’s true that the purpose of survival precedes natural selection, because obviously natural selection only decides what changes will help to fulfil the purpose of survival. I can’t see evolutionists quaking in their boots at any of this.

DAVID: so, the will to survive precedes survival itself as the driving factor. Why does that will come from? Why must it exist? If the survival struggle is so hard, why struggle? what agency implanted that drive?

Yes, the will to survive is the purpose that drives the struggle for survival, but according to our author, Darwin didn’t realize this, and nor do neo-Darwinists. Your own questions tie in with the biggest of them all: what agency created life? But that was not Darwin’s subject, which was the origin of species, not of life itself. In later editions of his book, he simply attributes that to the Creator, but presumably the author hasn’t read what Darwin actually wrote.

Evolution: teleology in biology

by David Turell @, Friday, November 04, 2022, 15:16 (546 days ago) @ dhw

Teleology in biology

DAVID: Every living organism has the purpose of survival:
https://evolutionnews.org/2022/11/a-closer-look-at-the-science-of-purpose/

QUOTE: Then along came Darwin. As we all know, he said that creatures survived and speciated based on the random and blind — that is, purposeless — actions of a thoroughly uncaring natural world. He made it all seem so simple: survival of the fittest was all there is to it.

dhw: How can it be called “purposeless” when the purpose is survival? “Random” concerns the theory which you and I have long since rejected, that the process depends on random mutations, but that does not in any way remove the obvious fact that all life forms struggle to survive, and the struggle to survive constitutes the purpose of their actions!

QUOTE: "Today, modern science embraces Darwin, in part because biologists want to be physicists, and also because it allows them to continue to leave God out. So the myth of Darwinism, in its new guise of neo-Darwinism, endures.

Does he really believe that all biologists are atheists, and does he not realize that Darwin himself was an agnostic who, in later editions of ORIGIN not only makes many references to the “Creator” but also emphasizes that his theory should not “shock the religious feelings of anyone”. Even the Catholic Church has accepted that there is no intrinsic conflict between the theory of evolution and Christianity. What world is our author living in?

QUOTE: "The struggle, however, depends on something else that Darwin didn’t see, something more fundamental. Antecedent to it is the desire to struggle, that is, to act in keeping with the organism’s purpose, to live. […]

dhw: So Darwinism is purposeless because before you try to fulfil the purpose of surviving, you have to want to survive, and survival is the purpose. I reckon Darwin would have been as amazed as I am at such reasoning.

QUOTE: "Simply put: Teleology, the purpose-driven innate property of life itself, precedes natural selection as the primary source of agency that explains evolution. Darwinism utterly misses this elementary fact."

dhw: So apparently Darwin didn’t realize that although the purpose was survival, the purpose of survival was not the driving force behind evolution because the driving force was the desire to survive, which was the purpose. However, it’s true that the purpose of survival precedes natural selection, because obviously natural selection only decides what changes will help to fulfil the purpose of survival. I can’t see evolutionists quaking in their boots at any of this.

DAVID: so, the will to survive precedes survival itself as the driving factor. Why does that will come from? Why must it exist? If the survival struggle is so hard, why struggle? what agency implanted that drive?

dhw: Yes, the will to survive is the purpose that drives the struggle for survival, but according to our author, Darwin didn’t realize this, and nor do neo-Darwinists. Your own questions tie in with the biggest of them all: what agency created life? But that was not Darwin’s subject, which was the origin of species, not of life itself. In later editions of his book, he simply attributes that to the Creator, but presumably the author hasn’t read what Darwin actually wrote.

I appreciate your Darwinist criticism of the article.

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