Protein production (Introduction)

by David Turell @, Wednesday, April 04, 2012, 15:18 (4594 days ago)

We all should know 64 codons make protein more than the 20 needed. It appears the extra ones are another layer of information to keep control over speed of production as well as correct production:- http://www.arn.org/blogs/index.php/literature/2012/04/03/challenging_half_a_century_of_...

Protein production

by Balance_Maintained @, U.S.A., Wednesday, April 04, 2012, 20:10 (4594 days ago) @ David Turell

I read through the article, and some of the referenced material, and I have to say I am intrigued. If I understand this correctly, this is an extention of the "junk DNA is not junk" research. If I understand all this correctly, it seems that what we have is segments of DNA that are blueprints, sections that are implentation plans, and some that are post-production plans. Hrmm, when something tells you where to go, how to get there, and what to do once you get there, we normally call that a plan. -Just out of curiosity, I wonder what are percentage of similarity to chimps is after this. It was around 80% before they started including some of the non-coding genes, and the last count I heard was around 60%... wonder if the trend will continue until people can say with some degree of certainty that mutating from a chimp into a human was, if not impossible, excruciatingly highly unlikely.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Protein production

by David Turell @, Wednesday, April 04, 2012, 21:04 (4594 days ago) @ Balance_Maintained

Just out of curiosity, I wonder what are percentage of similarity to chimps is after this. It was around 80% before they started including some of the non-coding genes, and the last count I heard was around 60%... wonder if the trend will continue until people can say with some degree of certainty that mutating from a chimp into a human was, if not impossible, excruciatingly highly unlikely.-Actually, the split began over 20 million years ago with a change in vertebrae preparing for the upright posture. (See Aaron Filler's book, The Upright Ape 
http://www.amazon.com/The-Upright-Ape-Origin-Species/dp/1564149331/ref=sr_1_2?s=books&ie=UTF8&qid=1333569323&sr=1-2-The final split from chimps, based on DNA was about 6 million years ago, gorillas at about 8-10 mya. In the fetus comparison, everyone looks like human babies in the beginning and then apes develop the larger jaw, etc.,(Sci Am article about 1992) while our babies stay the same. Adding the very recent finding of the hominin with the ape foot shows how our line was probably the dominant branch with the apes splitting off from us. We did not leave the trees and then get upright in the savannah. We were upright in the trees and left when we found we could with our new posture. It took a little while to get rid of the longer arms. Apes 'R not us, although atheists want it that way. I firmly believe in evoution with a purpose.

Proteins, Apes & Us

by dhw, Thursday, April 05, 2012, 14:55 (4593 days ago) @ David Turell

David has provided us with two posts concerning redundancy that is not redundant, and the theory that apes descended from humans, both of which he sees as supporting his belief in divine pre-planning. Many thanks for these intriguing posts.
 
I can see why the redundancy post favours your theory of advance planning, since one would have expected evolution to dispense with "junk DNA" rather than preserve it for future use. However, as regards Aaron Filler's theory, you have always argued that humans are God's chosen species, and you end your post by saying "I firmly believe in evolution with a purpose." What, then, do you believe to have been God's purpose behind the evolution of superior humans into inferior apes?-DAVID: Actually, the split began over 20 million years ago with a change in vertebrae preparing for the upright posture. [...] We did not leave the trees and then get upright in the savannah. We were upright in the trees and left when we found we could with our new posture. It took a little while to get rid of the longer arms. -I am puzzled by the reasoning here. A change in the vertebrae...longer arms...so the creature from which we descended lived in the trees, did not have an upright posture, and had longer arms. Sounds like an ape to me. So how does that make apes descendants of humans?

Proteins, Apes & Us

by David Turell @, Thursday, April 05, 2012, 15:16 (4593 days ago) @ dhw


> I am puzzled by the reasoning here. A change in the vertebrae...longer arms...so the creature from which we descended lived in the trees, did not have an upright posture, and had longer arms. Sounds like an ape to me. So how does that make apes descendants of humans?-First were ancient ape-like creatures. All of us primates came from apeness. Long arms, stooped knuckle-draging, tiny-brained. The only logical evolution from four-legged to upright. Split into three lines, hominin, gorilla, and chimp, after monkeys split off. Hominin kept changing, gorilla and chimpness did not. Hominin went to hominid to Homo. All fetuses look like us. We dominate the evolutionary drive. When we came to a fork in the road only we took the ongoing road. We are the main line and even created four different Homos, and perhaps more as fossils turn up. It is a matter of perspective. I'm sure chimps would not agree with me.

Proteins, Apes & Us

by dhw, Friday, April 06, 2012, 13:35 (4592 days ago) @ David Turell

David drew our attention to a sensational theory propounded by Aaron Filler: "there is now compelling evidence that apes descended from humans and not the other way around." David believes this supports his contention that humans are God's chosen species (so why would humans have evolved into apes?) and evolution has a purpose (to produce apes?). However:-Dhw: I am puzzled by the reasoning here. A change in the vertebrae...longer arms...so the creature from which we descended lived in the trees, did not have an upright posture, and had longer arms. Sounds like an ape to me. So how does that make apes descendants of humans?-DAVID: First were ancient ape-like creatures. All of us primates came from apeness. Long arms, stooped knuckle-dragging, tiny-brained. The only logical evolution from four-legged to upright. Split into three lines, hominin, gorilla, and chimp, after monkeys split off. Hominin kept changing, gorilla and chimpness did not. Hominin went to hominid to Homo.
 
So according to this, Darwin was right (common descent, four-legged to upright) and Filler is wrong (humans evolved into apes, upright to four-legged). Now I'm even more puzzled by Filler's reasoning and yours.

Proteins, Apes & Us

by David Turell @, Friday, April 06, 2012, 16:18 (4592 days ago) @ dhw


> DAVID: First were ancient ape-like creatures. All of us primates came from apeness. Long arms, stooped knuckle-dragging, tiny-brained. The only logical evolution from four-legged to upright. Split into three lines, hominin, gorilla, and chimp, after monkeys split off. Hominin kept changing, gorilla and chimpness did not. Hominin went to hominid to Homo.
> 
> So according to this, Darwin was right (common descent, four-legged to upright) and Filler is wrong (humans evolved into apes, upright to four-legged). Now I'm even more puzzled by Filler's reasoning and yours.-re-read my response. Don't be obtuse. Monkeys first, then a vertebae change to indicate a hominin line, from which a gorilla line and a chimp line branched off. Of course Darwin was correct. Filler's discovery supports this.

Proteins, Apes & Us

by dhw, Saturday, April 07, 2012, 16:53 (4591 days ago) @ David Turell

DAVID: First were ancient ape-like creatures. All of us primates came from apeness. Long arms, stooped knuckle-dragging, tiny-brained. The only logical evolution from four-legged to upright. Split into three lines, hominin, gorilla, and chimp, after monkeys split off. Hominin kept changing, gorilla and chimpness did not. Hominin went to hominid to Homo.-Dhw: So according to this, Darwin was right (common descent, four-legged to upright) and Filler is wrong (humans evolved into apes, upright to four-legged). Now I'm even more puzzled by Filler's reasoning and yours.-David: re-read my response. Don't be obtuse. Monkeys first, then a vertebrae change to indicate a hominin line, from which a gorilla line and a chimp line branched off. Of course Darwin was correct. Filler's discovery supports this.-I apologize for my obtuseness, but you have read the book, whereas all I have to go on is your comments and the Amazon blurb, which states categorically that "apes descended from humans and not the other way around." This would seem to turn evolution on its head, but your scenario is that only MODERN apes (gorillas and chimps) have a human ancestor, and Darwin's theory is not under attack. So what do we have? Four-legged ape-like tree-dwelling creatures (you call them monkeys) underwent a mutation which straightened their backs and turned them into hominins. These went down into the savannah where, despite the advantages of being upright, some of them underwent a mutation that turned them back into four-legged apes (now called chimps) which went up into the trees again. Other hominins evolved into hominids, and then into homos. Is this correct?-I'm in no position to dispute the science here, though it would be helpful if we could have another scientist's view. You have examined the evidence and are convinced, so I'd prefer now to probe on a more philosophical level.-1) In your post of 04 April at 21.04, you cried exultantly: "Apes R not us, although atheists want it that way." Despite Dawkins' announcement that he is an African ape, I don't know of any other human who claims actually to BE an ape. In the light of your explanation, and if the criterion is lines of descent, should the cry now be "We R monkeys"? And "Chimps R us"? Otherwise, perhaps you would explain exactly what you meant.-2) Even if Filler's theory that chimps are descended from humans is true, how does it support your belief that humans are God's chosen species? -3) How does it support your belief that evolution has a purpose, if you think the purpose is/was to produce humans?-4) You have often argued that humans are different from other animals in kind and not degree. I can follow the arguments about consciousness etc., but how does Filler's theory support this thesis? If it doesn't, what is its significance?

Proteins, Apes & Us

by David Turell @, Saturday, April 07, 2012, 18:09 (4591 days ago) @ dhw

I apologize for my obtuseness, but you have read the book, whereas all I have to go on is your comments and the Amazon blurb, which states categorically that "apes descended from humans and not the other way around." This would seem to turn evolution on its head, but your scenario is that only MODERN apes (gorillas and chimps) have a human ancestor, and Darwin's theory is not under attack. -I've not had time to read the book, so I have used the reviews which make a quite clear picture to me, although sensationalizing Filler's thesis. From the fragmentary vertebral discoveries Filler thinks there is a slightly upright ape from whom gorillas, chimps and were developed. The fetal development study, I quote, supports this. Apes did not descended from humans like us; view it this way: there was a dedicated 'human line' that was very much an ape-like creature 20 million years ago. If we could see every changed generation that ape would go to hominin to hominid to Homo, and along the way gorillas would branch off 8 mya and chimps would branch off 6 mya. The first hominins were tree-dwelling and entered the savannah when their uprightness allowed it. Key alteration in evolution theory: Upright before savannah.
> 
> 2) Even if Filler's theory that chimps are descended from humans is true, how does it support your belief that humans are God's chosen species? -The idea of a dedicated human line. 
> 
> 3) How does it support your belief that evolution has a purpose, if you think the purpose is/was to produce humans?-I think is obvious from my discussion.
> 
> 4) You have often argued that humans are different from other animals in kind and not degree. I can follow the arguments about consciousness etc., but how does Filler's theory support this thesis? If it doesn't, what is its significance?-It does fit my pre-planning discussions from the past. If you understand my interpretation of evolution from 20 million years ago in the primate line, starting with long-tailed monkeys, it all makes sense and fits with Darwin's initial proposals.

Proteins, Apes & Us

by Balance_Maintained @, U.S.A., Saturday, April 07, 2012, 19:31 (4591 days ago) @ David Turell

I am no geneticist, so a lot of the nuances of evolutionary theory are lost on me, but things like this raise questions in my layman brain. Perhaps David can ellucidate further.-1)How can they distiguish with any certainty ages of deviation, such as Apes seperated from hominids 20mya, particularly if they are not certain which came first?-2)If all members of a phenotype have to deal with roughly the same environmental conditions, why should we not expect to see a vast number of similarities in their genetic code? I.E. If all land animals breathe oxygen through lungs, then the basic genetic structure for lungs for all such creatures should exist and should be roughly identical. -3)If a large portion of the genetic code deals with what happens before, or after a structure is in place, why should we not expect to see variations between them that would vary the rate of production and such? Obviously, an 800lb gorilla would need substantially more hemoglobin than a 200lb human. -4)If these variations are only to be expected, due to size, physiology, and environment, how do they explicitly imply genetic heritage from one group to another simply by the fact that they exist in each? I.E. If they are a requirement for life at a certain level, then no life could exist at that level without them. -5)How does any of this account for innovation in the genetic structure?-
To use a much simpler example, look at the automobile. All vehicles have combustion engines, tires, axles, and a number of other shared features that are necessary for being able to be used on the standard highway system. The laws of physics also make certain of these features, if not mandatory, then highly useful. Now, an evolutionist would say that because the wheel was discovered in ancient times, and the axle some time later, then the cart, the chariot, the wagon, the carriage, the model T, and then the Semi and Hummer. In a sense, they are correct in that one idea lead to another. What it wouldn't explain is all the intermediate changes that must happen. You could never turn a wheel into a chariot without some serious innovation, not just in the vehicle itself, but also in the environment, roads, animal husbandry, leather working, wood working, and metal working. Each of those things in turn would require major advances and inovations as well. These are all things which are outside the scope of the chariot itself. So, saying that the chariot, or the Semi, is the direct ancestor of the wheel is pure fanciful imagination. Even something like the switch between 2 wheels and four wheels is not a trivial matter. So how is it that geneticist and evolutist continually attempt to trivialise the changes that would have had to have occured for even the simplest of biological changes to have occured? -One of the things I often see used to support the theory of gradual change is when a scientist raises a culture of 5million(Or some similarly ridiculous number) generations of bacteria and notes a small single change. How does that work for creatures with longer life spans? 5 million generations of Hominid, or Canine would take significantly longer, and yet they proscribe the a greater variety and magnitude of changes to a drastically reduced population. Even IF you assume 20m years of human evolution and even IF you assume a lifespan of 35 years, you still only have less than 600k generations of homonid. If humanity started at the same time as the earth, you still would only have 115m generations at 35 years each. That number is reduced dramatically if the life span increases even a little. So how do we account for the vast number of itterations that would have had to have occured, when there is simply not enough time? How do the numbers work out when we know that there were global extinctions periodically throughout history? That is not even factoring in infant morality rates or those that died without breeding, or geographical seperation of the gene pool, none of which are modeled in these studies.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Proteins, Apes & Us

by David Turell @, Saturday, April 07, 2012, 22:14 (4591 days ago) @ Balance_Maintained

1)How can they distiguish with any certainty ages of deviation, such as Apes seperated from hominids 20mya, particularly if they are not certain which came first?-This is done with retrograde study of DNA noting changes in species. DNA can be obtained from fossils. I cannot describe the methods any further. But this discussion starts at monkeys with tails. Then apes and us.
> 
> 2)If all members of a phenotype have to deal with roughly the same environmental conditions, why should we not expect to see a vast number of similarities in their genetic code? I.E. If all land animals breathe oxygen through lungs, then the basic genetic structure for lungs for all such creatures should exist and should be roughly identical. -Phenotype is much more than lungs. we differ 20% from chimps, when transpositions, etc., are all noted
> 
> 3)If a large portion of the genetic code deals with what happens before, or after a structure is in place, why should we not expect to see variations between them that would vary the rate of production and such? Obviously, an 800lb gorilla would need substantially more hemoglobin than a 200lb human.- I don't follow your question. If a human needs 5 quarts of blood, the gorilla needs 20. A small genetic variation will take care of that.
> 
> 4)If these variations are only to be expected, due to size, physiology, and environment, how do they explicitly imply genetic heritage from one group to another simply by the fact that they exist in each? I.E. If they are a requirement for life at a certain level, then no life could exist at that level without them.-I don't follow this at all. 
> 
> 5)How does any of this account for innovation in the genetic structure?-It is amazing how small the gene changes are in total to get a new species but there are a number of changes throught the genome.-http://www.sciencedaily.com/releases/2012/04/120403140042.htm (same refrence I listed a couple days ago)-> 
> One of the things I often see used to support the theory of gradual change is when a scientist raises a culture of 5million(Or some similarly ridiculous number) generations of bacteria and notes a small single change. How does that work for creatures with longer life spans? 5 million generations of Hominid, or Canine would take significantly longer, and yet they proscribe the a greater variety and magnitude of changes to a drastically reduced population. Even IF you assume 20m years of human evolution and even IF you assume a lifespan of 35 years, you still only have less than 600k generations of homonid.-Wrong math, but you are correct about the small number of generations. Divide 20 million years by 12 years per reproducing generation, not lifespan. Consider 1.66 million generations. This is why puctuated equilibrium is so important to consider, and why epigenetics has reared its ugly head. Evolution is not gradual. And why I think it is directed.

Proteins, Apes & Us

by Balance_Maintained @, U.S.A., Sunday, April 08, 2012, 00:24 (4591 days ago) @ David Turell

Ok, I think David missed the thrust of those questions, so I will try to redefine them. -We see a lot of hooplah chatter in the news about our evolution from monkeys or apes, or their evolution from us, or how we all crawled up out of the muck. We also see a lot of strangely fixed dates and proclamations, about which there is not really enough evidence to make such proclamations. -Retrograde analysis of the fossil record is only as good as your ability to date the fossils. Even within the span of a few thousand years, C14 dating becomes quite inaccurate, much more so over the span of millions and millions of years. So, if you are studying two fossils dated approx 20my old, then you have quite a large probability for error, which in turns colors your results. If the dating for the Ape was off by 1 million years in one direction, and the hominid by a million in the other direction, you could be putting the chicken before the egg. Now, that being said, while we know that C14 degrades at a constant rate, we have only been studying that rate for less than a century, so our understanding of the long term degradation rates, or of things that may influence that rate over time, is limited. Note, I am not saying it is wrong, just that we do not have impirical evidence for more than the last hundred years. Even if we test older objects for which we know the time they were created precisely, that still limits us to less than 10k years of human history. So, my question is, how do we know the date of separation? How can we be sure that we are not stuck in a chicken and the egg conundrum that is simply being overlooked in our desire to promote one methodology of looking at the world? -All of the questions pertaining to the degree of difference between say, hominids an apes or chimps, is to say this. There are certain immutable laws that are in effect. Some are universal such as radiation, others are localized and terrestial, such as gravity. In any given epoch of Earth's history, all creatures in a given biosphere had to adapt to certain conditions that were beyond their control. These would have included air quality, temperature, gravity, micro organisms, even food sources. Any creature that had to deal with the same environmental pressures would have by necessity had to have come to extremely similar physiological methods of dealing with it. These methods are limited by certain facts.


  • DNA, is the blueprint for these changes and adaptations.

  • There are only a limited number of combinations of DNA molecules within the segment of the genetic code allocated to dealing with that particular scenario

  • Whatever structure is arrived at must work for the environment

  • Whatever structure is arrived at must work for the given phenotype


-So there are some logical assumptions that stem from this:-Creatures in the same habitat would have to conform to the same environmental pressures to varying degrees. Further, the closer the creatures are to each other physiologically, the more likely they are to adapt in the same or extremely similar manner because that is the only viable method of adaptation for that specific pressure.-This suggest that you would see extreme similarities, genetically, between any creatures that posessed similar physiology and shared a similar environment, IRREGARDLESS OF ANCESTERY. -My point is, commonalities in the genetic structure logically do not necessarily imply common decent.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Proteins, Apes & Us

by David Turell @, Sunday, April 08, 2012, 01:42 (4591 days ago) @ Balance_Maintained

We also see a lot of strangely fixed dates and proclamations, about which there is not really enough evidence to make such proclamations. 
> 
> Retrograde analysis of the fossil record is only as good as your ability to date the fossils. Even within the span of a few thousand years, C14 dating becomes quite inaccurate, -Agreed about C14. It doesn't go back very far accurately, but, there are 4-5 other isotopic methods that are said to be much more accurate, and they are actively used and agree with each other I believe within 10%. When they give a branch at 6 mya no one expects that to be on the dot.
>-> Any creature that had to deal with the same environmental pressures would have by necessity had to have come to extremely similar physiological methods of dealing with it. These methods are limited by certain facts.
>

  • DNA, is the blueprint for these changes and adaptations.
>
  • There are only a limited number of combinations of DNA molecules within the segment of the genetic code allocated to dealing with that particular scenario
>
  • Whatever structure is arrived at must work for the environment
>
  • Whatever structure is arrived at must work for the given phenotype
>


> 
> So there are some logical assumptions that stem from this:
> 
> Creatures in the same habitat would have to conform to the same environmental pressures to varying degrees. Further, the closer the creatures are to each other physiologically, the more likely they are to adapt in the same or extremely similar manner because that is the only viable method of adaptation for that specific pressure.
> 
> This suggest that you would see extreme similarities, genetically, between any creatures that posessed similar physiology and shared a similar environment, IRREGARDLESS OF ANCESTERY. -Not extreme. Chimps are over 20% different. 
> 
> My point is, commonalities in the genetic structure logically do not necessarily imply common decent.-We can only go by the fossils we find. By layer of Earth (see Grand Canyon pictues for guidance, and I know about the 750 million yr. great unconformity)) and by isotopic dating the dates of appearance are relatively close. Monkeys with tails precede apes and us. Our fossils with apes are all intermixed through time. We obviously descended together and initially from monkeys. We certainly didn't appear 4004 B.C.-Do you believe in descent by saltation?

Proteins, Apes & Us

by Balance_Maintained @, U.S.A., Sunday, April 08, 2012, 04:23 (4591 days ago) @ David Turell

Agreed about C14. It doesn't go back very far accurately, but, there are 4-5 other isotopic methods that are said to be much more accurate, and they are actively used and agree with each other I believe within 10%. When they give a branch at 6 mya no one expects that to be on the dot.-10% @ 20my is +/-2my, a 4my spread. That is not insignificant.-> Not extreme. Chimps are over 20% different. 
> > -Over 20% different. My curiosity makes me wonder how much of that remaining 80% is covered by points that I mentioned, i.e. things that are the way they are because they have to be that way in order for creatures of similar physiology to deal with their environments. In other words, I want to be able to hash out mandatory life requirement coding DNA from more trivial DNA changes. -
> > My point is, commonalities in the genetic structure logically do not necessarily imply common decent.
> 
> We can only go by the fossils we find. By layer of Earth (see Grand Canyon pictues for guidance, and I know about the 750 million yr. great unconformity)) and by isotopic dating the dates of appearance are relatively close. Monkeys with tails precede apes and us. Our fossils with apes are all intermixed through time. We obviously descended together and initially from monkeys. We certainly didn't appear 4004 B.C.
> 
> Do you believe in descent by saltation?-I don't know what I believe, and in fact do not claim to know the truth of the matter. The part of me raised in a religious environment would love to say that we are special creations. The analytical side of me thinks that some degree of evolution is real. There are too many bits and pieces that do not make sense for me to buy it wholesale, however. Obviously, we did not just pop into existance 6k years ago, I have never believed that, and was never encouraged to believe it, even in my very religious upbrining. That sort of fundamentalist nonsense is as annoying to me as it likely is to persons such as Dawkins. -I have not seen enough evidence to convince me of speciation via evolution. I have not seen enough evidence to convince me that there has been enough TIME for all of the crap they expect us to swallow about evolution. Punctuated equilibrium and Epigenics make sense, but I still have not seen any evidence of speciation via these mechanisms, so I am stuck.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Proteins, Apes & Us

by David Turell @, Sunday, April 08, 2012, 15:47 (4590 days ago) @ Balance_Maintained

I have not seen enough evidence to convince me of speciation via evolution. I have not seen enough evidence to convince me that there has been enough TIME for all of the crap they expect us to swallow about evolution. Punctuated equilibrium and Epigenics make sense, but I still have not seen any evidence of speciation via these mechanisms, so I am stuck.-That is why I think evolution is guided. If you read Michael Denton's two books: Evolution & Nature's Destiny; and add Simon Conway Morris' Life's Solution, you will begin to understand my viewpoint. Morris makes a powerful point in his discussion of 'convergence'. Six different kinds of eyes is an example.-Having traveled the Grand Canyon by oared raft with one of the world's leading canyon geologists, head of a major university geology department, I really appreciate the layer cake the Earth is. From your background I'm sure you do also. The ages of those layers are pretty specific. The complexity of the fossils increases as you travel up in time from the Vishnu Shist. Evolution by some method must have happened. By chance mutation, no way. The origin of life falls into the same category. The books above are the best threesome I have encountered to suggest pre-plannng.-And it is OK to be a scientist and believe in God. Any reasonable person looking at science can see the pointers to God:-Nobel Scientist, Dr. Phillips, and his thoughts: -http://uip.edu/en/articles-en/ordinary-science-ordinary-faith

Proteins, Apes & Us

by dhw, Sunday, April 08, 2012, 15:32 (4590 days ago) @ David Turell

Aaron Filler has a theory that modern apes are descended from human ancestors.-DAVID: Apes did not descend from humans like us [...] there was a dedicated 'human line' that was very much an ape-like creature 20 million years ago.-This is also your justification for regarding humans as God's chosen species. If you believe in evolution as opposed to God's separate creation, chimps also have a dedicated line, and strictly speaking EVERY species has a dedicated line! Because theoretically EVERY species must have a line back to Darwin's "few forms or one".
 
I have found a website with a few short extracts from Filler's book, so we can examine the logic for ourselves: www.uprightape.net. Here are three quotes from a single chapter:-"First there was one. Now there are four upright bipedal species of apes before the chimp-human split."
 
"Paleoanthropology as a field has not yet come to grips with the revolutionary implications. The first "human" was probably Morotopithecus and probably lived 21 million years ago. The existing apes have a human ancestor."-"For fifty years we have defined the first humans by the acquisition of upright bipedal posture in creatures like Lucy (Australopithecus afarensis) who had brains like other apes. However, it now appears that based on this definition human history must reach back to the Miocene of 21 million years ago."-Human history must reach back like every other history to the earliest forms of life. If bipedalism has been the criterion for 50 years, maybe it's time we changed the criterion in view of the confusion it seems to cause. Within just a few lines Filler himself refers to the upright bipedal species as apes, then as "human", and then as human, which gives him his sensational, "revolutionary" conclusion. May I suggest that what he has shown is that both humans and existing apes have various species of apes as their ancestors (hardly revolutionary, as it = Darwinism, which you acknowledge). Filler's theory then depends partly on language ... i.e. whether we call the earlier bipedal species apes (which he does) or humans (which he does) or hominins (your humans that are not like us). -However, David, you say: "We can only go by the fossils we find." Since the fossil record is so sparse, do we really know what lines followed what lines? How can anyone say for sure that modern gorillas and chimps are descended from any of those four bipedal species of apes, which were all presumably contemporary with other species of four-legged apes, which themselves also presumably continued to evolve into new species? When I was young, the in vogue expression was "the missing link". It seems to me, as Tony has indicated, that there are countless missing links in every theory. Filler's "revolutionary" one makes less and less sense the more I look at it, but then so does everything else in this sweet mystery of life.

Proteins, Apes & Us

by David Turell @, Sunday, April 08, 2012, 16:05 (4590 days ago) @ dhw


> "First there was one. Now there are four upright bipedal species of apes before the chimp-human split."
> 
> "Paleoanthropology as a field has not yet come to grips with the revolutionary implications. The first "human" was probably Morotopithecus and probably lived 21 million years ago. The existing apes have a human ancestor."
> 
> "For fifty years we have defined the first humans by the acquisition of upright bipedal posture in creatures like Lucy (Australopithecus afarensis) who had brains like other apes. However, it now appears that based on this definition human history must reach back to the Miocene of 21 million years ago."
> 
> Human history must reach back like every other history to the earliest forms of life. If bipedalism has been the criterion for 50 years, maybe it's time we changed the criterion in view of the confusion it seems to cause. Within just a few lines Filler himself refers to the upright bipedal species as apes, then as "human", and then as human, which gives him his sensational, "revolutionary" conclusion. May I suggest that what he has shown is that both humans and existing apes have various species of apes as their ancestors (hardly revolutionary, as it = Darwinism, which you acknowledge). Filler's theory then depends partly on language ... i.e. whether we call the earlier bipedal species apes (which he does) or humans (which he does) or hominins (your humans that are not like us). -A final species has to start somewhere, and have some directionality. If you have my viewpoint of pre-planning, it all makes sense. 
> 
> However, David, you say: "We can only go by the fossils we find." Since the fossil record is so sparse, do we really know what lines followed what lines? How can anyone say for sure that modern gorillas and chimps are descended from any of those four bipedal species of apes, which were all presumably contemporary with other species of four-legged apes? When I was young, the in vogue expression was "the missing link". It seems to me, as Tony has indicated, that there are countless missing links in every theory. Filler's "revolutionary" one makes less and less sense the more I look at it, but then so does everything else in this sweet mystery of life.-You and I are are too old. My childhood friends discussed the missing link also. Filler is locating it. Your problem is your allegance to Darwin. He did not get it right, and he couldn't help it. His upperclass position had him rely on Alfred Russel Wallace's observations, but he never caught onto the implications Wallace appreciated being in the field. Wallace was closerto the truth. See my answer to Tony just previous.

Proteins, Apes & Us

by Balance_Maintained @, U.S.A., Monday, April 09, 2012, 01:39 (4590 days ago) @ David Turell

I remember debates about the missing link from my childhood. My take on it was not "What is the missing link?", but rather, "Is there a missing link at all?"-This is the problem I have with Evolutionary theory and fundamentalist creationist alike: If you are looking at the data with the intention of proving a theory, you will find the proof you are looking for, regardless of whether or not it proves anything or has any explanatory power.-Evolutionary biology looks at hominid and ape specimens, but recent and ancient, looking to prove evolution. So, that is the evidence that they find. Creationist look at those same specimens looking to prove creation, so that is what they find. My understanding of science was that the process was supposed to occur somewhat in reverse. You look at the data without blinkers and blinders, and build a hypothesis based on what you find. Then you try to DISPROVE that hypothesis, not prove it. Science today seems to work the other way around. They come up with a hypothesis, perhaps based on data, perhaps on someone elses interpretation of data, or perhaps based on a personal agenda, and then try to PROVE that hypothesis instead of disprove it.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Proteins, Apes & Us

by David Turell @, Tuesday, April 10, 2012, 04:34 (4589 days ago) @ Balance_Maintained


> Evolutionary biology looks at hominid and ape specimens, but recent and ancient, looking to prove evolution. So, that is the evidence that they find. -The specimens are so sparce, it will be another 50 years before we have enough to really follow the various lines without lots of guessing. Gould said it was the trade secret of paleoanthropology that all we had were the 'tips and nodes' of the branches. -I still follow the 'third way': guided evolution, the only interpretation which makes any sense.

Proteins, Apes & Us

by dhw, Monday, April 09, 2012, 16:45 (4589 days ago) @ David Turell

DAVID: A final species has to start somewhere, and have some directionality. If you have my viewpoint of pre-planning, it all makes sense.-How do we know that any species is "final"? What would you expect the Earth and humans to be like in, say, 3 million years' time? But if you mean the species we have now, including ourselves, your God must also have pre-planned chimps, sparrows, ants, the duck-billed platypus, and every other species in existence. How does this prove that humans are the "chosen" species? In this context, your previous arguments concerning the uniqueness of human consciousness and achievements strike a very real chord in me, but I cannot see any relevance to your beliefs in Filler's extraordinary thesis that bipedal apes = "humans" = humans, and therefore humans evolved into modern apes. See below.-DAVID: Your problem is your allegiance to Darwin.-No, my problem is Filler's use of language. On 06 April at 16.18 you wrote: "Monkeys first, then a vertebrae change to indicate a hominin line, from which a gorilla line and a chimp line branches off. Of course Darwin was correct. Filler's discovery supports this."-Filler's "discovery" (not theory?) supports Darwin if you classify the hominins as hominins (which you do) or as apes (which Filler does), but it brings in a sensational new dimension if you classify them as humans (which Filler does). You have hit the nail on the head when you say Filler is locating what we both used to call "the missing link". If we replace his "ape" and "human" with "common ancestors", his four bipedal fossils fit in perfectly with Darwin's theory of common descent. Then instead of his sensational "existing apes have a human ancestor" and Amazon's even more explicit "apes descended from humans and not the other way round", we have "humans and modern apes have common ancestors". But that means goodbye to the self-proclaimed "revolutionary" dimension of Filler's theory. -*******
David: Nobel scientist, Dr Phillips, and his thoughts:-http://uip.edu/en/articles-en/ordinary-science-ordinary-faith-Thank you for this wonderful article, which I'm sure Tony and Casey will love too. Beautifully written and argued, and a tonic in this day and age of strident irrationality. I'm particularly struck by his absolute honesty ... he makes no pretence at knowing the answers to the mysteries that we've all been puzzling over. Even if he is a practising Christian, David, you may well be blood brothers! Although I can't share his faith, he made me immensely proud to be human, and my seat on the fence is all the warmer and softer for reading his thoughts.

Proteins, Apes & Us

by David Turell @, Tuesday, April 10, 2012, 00:42 (4589 days ago) @ dhw


> Filler's "discovery" (not theory?) supports Darwin if you classify the hominins as hominins (which you do) or as apes (which Filler does), but it brings in a sensational new dimension if you classify them as humans (which Filler does). -No he doesn't: See his original paper. He is describing the start of a line that leads to upright humans:-http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0001019)--> You have hit the nail on the head when you say Filler is locating what we both used to call "the missing link". If we replace his "ape" and "human" with "common ancestors", his four bipedal fossils fit in perfectly with Darwin's theory of common descent.-Yes.-> Then instead of his sensational "existing apes have a human ancestor" and Amazon's even more explicit "apes descended from humans and not the other way round", we have "humans and modern apes have common ancestors". But that means goodbye to the self-proclaimed "revolutionary" dimension of Filler's theory. -Forget the hype. Filler himself is reasonable as I have said, and if he is correct, it is sensational: his proposal is an ancient ape started on the road to upright bipedalism and every one else branched off. Since humans are the only truly bipedal survivors of the process of evolution, everyone branched off the 'human line'. Not an unreasonalbe viewpoint.
> 
> *******
> David: Nobel scientist, Dr Phillips, and his thoughts:
> 
> http://uip.edu/en/articles-en/ordinary-science-ordinary-faith
> 
> Thank you for this wonderful article, which I'm sure Tony and Casey will love too. -We theists can be human.

Proteins, Apes & Us

by dhw, Tuesday, April 10, 2012, 16:28 (4588 days ago) @ David Turell

Dhw: Then instead of his sensational "existing apes have a human ancestor" and Amazon's even more explicit "apes descended from humans and not the other way round", we have "humans and modern apes have common ancestors". But that means goodbye to the self-proclaimed "revolutionary" dimension of Filler's theory.
 
DAVID: Forget the hype. Filler himself is reasonable as I have said, and if he is correct, it is sensational: his proposal is an ancient ape started on the road to upright bipedalism and every one else branched off. Since humans are the only truly bipedal survivors of the process of evolution, everyone branched off the 'human line'. Not an unreasonable viewpoint.-Who is "everyone"? Monkeys and apes are still with us, and a single fossil from 21 million years ago plus three other bipedal fossils don't mean there weren't other, different monkey/ape/hominin/hominid lines (convergence comes to mind). As you say in your post to Tony: "The specimens are so sparse, it will be another 50 years before we have enough to really follow the lines without lots of guessing."-However, it is indeed the hype that has put me off, and "existing apes have a human ancestor" are his own words, not someone else's. Sadly, I can't get the article you've referred to. I only get "Article not found" ... and I have far too much respect for you to push this issue. If you think the original paper makes a good case for "the start of a line that leads to upright humans", that's fine with me. After all, there has to be such a line if we believe in common descent.

Proteins, Apes & Us

by David Turell @, Tuesday, April 10, 2012, 17:37 (4588 days ago) @ dhw


> However, it is indeed the hype that has put me off, and "existing apes have a human ancestor" are his own words, not someone else's. Sadly, I can't get the article you've referred to. I only get "Article not found" ... and I have far too much respect for you to push this issue. If you think the original paper makes a good case for "the start of a line that leads to upright humans", that's fine with me. After all, there has to be such a line if we believe in common descent.-See my last entry correcting the links posted a few minutes ago. You will see his reasoning, especially in his introduction on page 2.-http://www.uprightape.net/Homeotic_Evolution.pdf or google all of this next line:-PLoS ONE | www.plosone.org October 2007 | Issue 10 | e1019

Proteins, Apes & Us

by dhw, Wednesday, April 11, 2012, 13:18 (4587 days ago) @ David Turell

Dhw: However, it is indeed the hype that has put me off, and "existing apes have a human ancestor" are his own words, not someone else's. Sadly, I can't get the article you've referred to. I only get "Article not found" ... and I have far too much respect for you to push this issue. If you think the original paper makes a good case for "the start of a line that leads to upright humans", that's fine with me. After all, there has to be such a line if we believe in common descent.-DAVID: See my last entry correcting the links posted a few minutes ago. You will see his reasoning, especially in his introduction on page 2.http://www.uprightape.net/Homeotic_Evolution.pdf 
or google all of this next line:
PLoS ONE | www.plosone.org October 2007 | Issue 10 | e1019-Thank you, David. Initially I thought it said "homoerotic", but that must have been the influence of the book I'm translating at the moment, entitled RODIN AND EROS! -I've read the introduction, and I can see what you're getting at. He really doesn't need the "hype", does he? The line he's following is clearer to me now, and I'm happy to leave it at that, if you are.

Proteins, Apes & Us

by David Turell @, Wednesday, April 11, 2012, 18:57 (4587 days ago) @ dhw


> DAVID: See my last entry correcting the links posted a few minutes ago. You will see his reasoning, especially in his introduction on page 2.http://www.uprightape.net/Homeotic_Evolution.pdf 
> or google all of this next line:
> PLoS ONE | www.plosone.org October 2007 | Issue 10 | e1019
> 
> Thank you, David. Initially I thought it said "homoerotic", but that must have been the influence of the book I'm translating at the moment, entitled RODIN AND EROS! 
> 
> I've read the introduction, and I can see what you're getting at. He really doesn't need the "hype", does he? The line he's following is clearer to me now, and I'm happy to leave it at that, if you are.-Note tongue in cheek review of all our recent ancestors from the last 7-8 milion years. Neanderthals not so brutish:-http://www.salvomag.com/new/articles/salvo20/disappearing-link.php

Proteins, Apes & Us

by David Turell @, Tuesday, April 10, 2012, 17:34 (4588 days ago) @ David Turell
edited by unknown, Tuesday, April 10, 2012, 17:55


> > Filler's "discovery" (not theory?) supports Darwin if you classify the hominins as hominins (which you do) or as apes (which Filler does), but it brings in a sensational new dimension if you classify them as humans (which Filler does). 
> 
> No he doesn't: See his original paper. He is describing the start of a line that leads to upright humans:
> 
> Try this link to see his original paper: -http://www.uprightape.net/Homeotic_Evolution.pdf , or google the entire line below::-PLoS ONE | www.plosone.org October 2007 | Issue 10 | e1019-> 
> 
> 
> > You have hit the nail on the head when you say Filler is locating what we both used to call "the missing link". If we replace his "ape" and "human" with "common ancestors", his four bipedal fossils fit in perfectly with Darwin's theory of common descent.
> 
> Yes.
> 
> > Then instead of his sensational "existing apes have a human ancestor" and Amazon's even more explicit "apes descended from humans and not the other way round", we have "humans and modern apes have common ancestors". But that means goodbye to the self-proclaimed "revolutionary" dimension of Filler's theory. 
> 
> Forget the hype. Filler himself is reasonable as I have said, and if he is correct, it is sensational: his proposal is an ancient ape started on the road to upright bipedalism and every one else branched off. Since humans are the only truly bipedal survivors of the process of evolution, everyone branched off the 'human line'. Not an unreasonalbe viewpoint.
> > 
> > *******
> > David: Nobel scientist, Dr Phillips, and his thoughts:
> > 
> > http://uip.edu/en/articles-en/ordinary-science-ordinary-faith
> > 
> > Thank you for this wonderful article, which I'm sure Tony and Casey will love too. 
> 
> We theists can be human.

Proteins, Apes & Us

by dhw, Sunday, April 15, 2012, 12:12 (4583 days ago) @ David Turell

DAVID: The first hominins were tree-dwelling and entered the savannah when their uprightness allowed it. Key alteration in evolution theory: Upright BEFORE savannah.-This certainly does have enormous implications for the theory of evolution. You may disagree with some of what follows, but let's just see where it leads us. A random, back-straightening mutation would fit in with Darwinian evolution: when the "fledgeling" hominin goes down into the savannah, it finds the mutation beneficial, undergoes additional refinements, and Natural Selection ensures that the upright savannah-dweller survives and flourishes. Exactly the same process would apply if the whole thing was pre-planned by your designer God. -However, supposing the innovation (i.e. the mutation to uprightness) was not random but was a direct response to environmental pressure? Then we have a very different scenario. As I've suggested in earlier posts, one or more localized events in isolated areas might have destroyed the forests and changed them into savannahs. In order to survive, the monkeys HAD to come down from the trees. And by dint of epigenetic mechanisms, directed by the intelligent cells that form all the communities of our different organs (Margulis), some monkeys straightened their backs, and the rest of the body adjusted accordingly, in due course creating the hominins we believe to be our ancestors. Maybe different forms of hominins in different areas (convergence), but all brought into being by the pressures of the environment, as opposed to the randomness (Darwin) or pre-planning (David) of mutations. This scenario has no bearing on the chance v. design debate, because of course it doesn't settle the all-important question of how such an adaptive, innovative mechanism could have originated. I'm only putting it forward because I find it more convincing if we attribute the change to a RESPONSE required by the environment rather than to an out-of-the-blue innovation that then has to seek a new environment to accommodate itself. But that means savannah before uprightness.

Proteins, Apes & Us

by David Turell @, Sunday, April 15, 2012, 15:35 (4583 days ago) @ dhw

DAVID: The first hominins were tree-dwelling and entered the savannah when their uprightness allowed it. Key alteration in evolution theory: Upright BEFORE savannah.->dhw: However, supposing the innovation (i.e. the mutation to uprightness) was not random but was a direct response to environmental pressure? Then we have a very different scenario. As I've suggested in earlier posts, one or more localized events in isolated areas might have destroyed the forests and changed them into savannahs. In order to survive, the monkeys HAD to come down from the trees. -And having to stoop over to walk on their knuckles how would that work in the savannah? The arms remained long until Lucy at two-three million years ago. You must think of whole body adapations. The fossil hunters also study paleoenvironment. No one has proposed your scenario of an earlier savannah. I think your thinking has taken you down a rabbit hole. Granted your reasoning is reasonable, but, if we can trust the science, it didn't happen your way

Proteins, Apes & Us

by dhw, Monday, April 16, 2012, 17:07 (4582 days ago) @ David Turell

DAVID: The first hominins were tree-dwelling and entered the savannah when their uprightness allowed it. Key alteration in evolution theory: Upright BEFORE savannah.-dhw: However, supposing the innovation (i.e. the mutation to uprightness) was not random but was a direct response to environmental pressure? Then we have a very different scenario. As I've suggested in earlier posts, one or more localized events in isolated areas might have destroyed the forests and changed them into savannahs. In order to survive, the monkeys HAD to come down from the trees. -DAVID: And having to stoop over to walk on their knuckles how would that work in the savannah? The arms remained long until Lucy at two-three million years ago. You must think of whole body adaptations. The fossil hunters also study paleoenvironment. No one has proposed your scenario of an earlier savannah. I think your thinking has taken you down a rabbit hole. Granted your reasoning is reasonable, but, if we can trust the science, it didn't happen your way.-Can we trust the science? We have a whole thread now devoted to that very subject. Besides, what science? Is there any scientific consensus on what happened? How do you know that Lucy was the first short-armed hominid? Is the fossil record complete? Even Lucy's locomotion is a matter of controversy:-Wikipedia: There is considerable debate regarding the locomotor behaviour of A. afarensis. Some believe that A. afarensis was almost exclusively bipedal, while others believe that the creatures were partly arboreal. The anatomy of the hands, feet and shoulder joints in many ways favour the latter interpretation.-But more to the point, you have argued that the first hominins went down into the savannah after a mutation that led to uprightness. Are you now suggesting that their uprightness was also accompanied by short arms? Clearly not if Lucy really was the first to have short arms! How upright is upright? All the scenarios are based on the same premise that a degree of uprightness conveyed an advantage. No matter whether it came via a random (or divinely planned) mutation or via an adaptation to new living conditions, the rest of the body would still have had to adapt to the new position (= your whole body adaptations). There is no way round this development if we believe in common descent. I'm pleased that you find my reasoning reasonable, because your alternative seems to me less reasonable: a chance or pre-planned mutation which leads the ex-monkey (still with long arms) to look for a new environment, versus my change in the environment which forces monkeys to adapt or die.
 
I've done some googling, and as usual found nothing but "may", "might", "perhaps". I copied and pasted the article below (but then couldn't find it again!) as an example (a) of scientists disagreeing, and (b) of some researchers favouring the theory that the expansion of the savannah forced early hominids to leave the trees and walk upright.-Did the first bipedal hominids live in the savannah or the forest?
 
Last year, a team of scientists announced that Ardi, a pre-human fossils dating back 4.4 million years ago, had lived in a wooded area, an idea that was revolutionary because it contradicted previous theories. However, according to new findings from another team of scientists who examined the exact same data, the environment of the first bipedal primates was more likely a savannah. -In 2009, a team from the University of California at Berkeley in the U.S. published in the journal Science data suggesting that the hominids of the species Ardipithecus ramidus, to which the Ardi fossil belongs, had lived in the woods of Africa. But recently another study published in the same magazine and based on the very same data contradicts this theory.-"Our team reviewed the data published by White and his colleagues last October [2009] and found that their data does not support this conclusion," said Naomi Levin, co-author of the new study, adding that the data indicated the opposite, that Ardipithecus ramidus lived in a savannah composed of mostly herbs and low-lying plants. -The environment in which these pre-humans lived is important to understand their evolution. The call of the savannah theory says that the expansion of this type of terrain was the reason these early hominids left the trees and began walking upright. The theory of life in a wooded setting, however, would require finding a new explanation for the developmental changes. -"If the habitat of Ardipithecus ramidus were savannahs where grass made up 60% of the biomass," says Levin, "we can not rule out the possibility that the open environment play an important role in human origins and, in particular, the origin of bipedal walking." He concludes: "Neither the public nor the scientific community should accept an exclusively forest habitat for Ardipithecus ramidus and the origin of bipedal walking because the data does not support it."-The authors of the research in 2009 have already responded in another article, defending the methodology and validity of their analysis and indicating that the area where the Ardipithecus ramidus lived was very diverse and that it is wrong to generalize about a single type of environment. -Would you still say that science leaves no room for the scenario I have put forward?

Proteins, Apes & Us

by David Turell @, Monday, April 16, 2012, 18:04 (4582 days ago) @ dhw

DAVID: The first hominins were tree-dwelling and entered the savannah when their uprightness allowed it. Key alteration in evolution theory: Upright BEFORE savannah.
> 
> dhw: However, supposing the innovation (i.e. the mutation to uprightness) was not random but was a direct response to environmental pressure? Then we have a very different scenario. As I've suggested in earlier posts, one or more localized events in isolated areas might have destroyed the forests and changed them into savannahs. In order to survive, the monkeys HAD to come down from the trees. 
> The authors of the research in 2009 have already responded in another article, defending the methodology and validity of their analysis and indicating that the area where the rdipithecus ramidus lived was very diverse and that it is wrong to generalize about a single type of environment. [/i]-Note the 'defense of methodiology'. All paleo scientists whether it is evolution or climate work with proxies. No direct evidence.
> 
> Would you still say that science leaves no room for the scenario I have put forward?-Find a proxy that fits your scenario! And you are all set to turn the world on its ear!

Proteins, Apes & Us: dhw look!!!

by David Turell @, Tuesday, April 17, 2012, 15:19 (4581 days ago) @ David Turell


> > Would you still say that science leaves no room for the scenario I have put forward?
> 
> Find a proxy that fits your scenario! And you are all set to turn the world on its ear!-I found it for you. Some rare chimps are ground sleepers:-http://www.sciencedaily.com/releases/2012/04/120416113058.htm

Proteins, Apes & Us: dhw look!!!

by dhw, Wednesday, April 18, 2012, 21:39 (4580 days ago) @ David Turell

David has proposed a scenario in which tree-dwelling monkeys undergo a mutation leading to uprightness, and then descend to the savannah. I proposed a scenario in which the trees have disappeared, and monkeys are forced to adjust to the savannah by becoming upright. I quoted two articles, one of which cast doubt on whether Lucy was bipedal or arboreal, and the other recorded two totally opposing views by teams of experts who had studied the same evidence and concluded (a) that Ardi was up in the trees, and (b) that he was down in the savannah. I think this leaves ample scientific latitude for my scenario.-DAVID: All paleo scientists whether it is evolution or climate work with proxies. No direct evidence. -Clearly the proxies that we do have allow for either interpretation.-DAVID: Find a proxy that fits your scenario! And you are all set to turn the world on its ear!-I don't understand why my scenario is so revolutionary. I thought it was your own that was turning the world on its ear!-DAVID: I found it for you. Some rare chimps are ground sleepers.-You are a true sportsman and gentleman. But wouldn't gorillas ... which spend most of their time on the ground ... also count as proxies? In any case, even the uprightness theory is part of a much bigger idea which started with Lynn Margulis's symbiotic relationships.-So please be patient with me ... as you always are ... and pick this argument to pieces, not by demanding direct evidence for (as you say, there is none for any of the theories), but by citing direct evidence against.-Cells cooperate. That is a fact. We have no idea how they do it, but their ability to form working communities indicates some kind of intelligence. (You may attribute that to God if you like.) Thanks to epigenetics, Lamarckism ... inheritance of acquired characteristics ... seems to be making a comeback. One of the weakest of all factors in the evolutionary theory is innovation. We know that major changes in the environment coincide with major changes to flora and fauna, with species becoming extinct and new species emerging. This suggests a possible link between environment and innovation. There are in fact two possibilities here, one of which I think has been proven: some species survive by adapting to environmental change. (I remember you giving us the example of a fish that did just that within a couple of generations.) This can only mean that organs undergo changes in order to preserve the status quo, and organs are communities of "intelligent" cells. But supposing we go one step further, to changes in the environment that allow for new ideas ... i.e. that allow cell communities to form totally new combinations. -To illustrate this, and stay within our uprightness framework, let me slightly revise my original thesis. Maybe the monkeys didn't HAVE to stand upright. After all, there are plenty of quadrupeds that manage perfectly well in the savannah. Supposing instead, some monkeys found that standing upright simply gave them an advantage ... to get a better view of predators, to reach the tops of bushes...in fact, whatever advantages your own brand of hominin had from its lucky or pre-planned mutation. Greater success would bring a greater survival rate, and the cell communities would adjust accordingly, with all the necessary changes to the pelvis, the shoulders and the rest of the anatomy (again, the same process that your own brand of hominin had to undergo). These acquired characteristics would then be passed on à la Lamarck. Such a scenario gives evolution two different types of impetus: not only NECESSARY but also USEFUL adaptations and innovations, all in accordance with what the environment demands or allows, and all organized by the cells within existing organisms. The beauty of this is that instead of Darwin's random mutations and unrelieved gradualism, and your pre-planned mutations with no necessity other than God's will, we have an intelligent response ... adaptive or innovative ... dictated by variations in the environment. If the Cambrian Explosion*** coincided with huge environmental changes (e.g. increase in oxygen), it may be that the cell communities found hitherto impossible ways of combining ... again bearing in mind that all species must evolve from existing species apart from the very first (unless you believe in special creation). -Design versus chance? No-one knows how the intelligent cell came into being, so that remains wide open. Proxies? Every species you can think of. If you believe in common descent, there has to be an internal mechanism (the "intelligent" cell) that governs innovation, and there has to be a trigger to set it in motion: your trigger is God's will, Darwin's is random mutation, and mine is the environment. All theories involve joining the dots of whatever information we have. Does this one leave out any of the dots?-
*** Thanks for the latest reference. The website is currently "experiencing difficulties".

Proteins, Apes & Us: dhw look!!!

by David Turell @, Thursday, April 19, 2012, 00:48 (4580 days ago) @ dhw


> Design versus chance? No-one knows how the intelligent cell came into being, so that remains wide open. Proxies? Every species you can think of. If you believe in common descent, there has to be an internal mechanism (the "intelligent" cell) that governs innovation, and there has to be a trigger to set it in motion: your trigger is God's will, Darwin's is random mutation, and mine is the environment. All theories involve joining the dots of whatever information we have. Does this one leave out any of the dots?-
I think your triggers are correct, but least likely Darwin. My version of God's will is within DNA: a drive to become more complex and to be inventive; the environment calls forth epigenetics; and Darwin is luck of the draw, and occasionally something works. Your cell intelligence and cooperation is reasonable, but is still a theory in infancy.

Proteins, Apes & Us: dhw look!!!

by dhw, Sunday, April 22, 2012, 20:25 (4576 days ago) @ David Turell

Dhw: Design versus chance? No-one knows how the intelligent cell came into being, so that remains wide open. Proxies? Every species you can think of. If you believe in common descent, there has to be an internal mechanism (the "intelligent" cell) that governs innovation, and there has to be a trigger to set it in motion: your trigger is God's will, Darwin's is random mutation, and mine is the environment. All theories involve joining the dots of whatever information we have. Does this one leave out any of the dots?-DAVID: I think your triggers are correct, but least likely Darwin. My version of God's will is within DNA: a drive to become more complex and to be inventive; the environment calls forth epigenetics; and Darwin is luck of the draw, and occasionally something works. Your cell intelligence and cooperation is reasonable, but is still a theory in infancy.-I'm delighted with this reply. I see little difference between the inventive drive of DNA and the intelligence and cooperation of cells. Your inventive DNA will get nowhere if it doesn't suit a particular environment, and my inventive cell gets going when the environment is suitable. I agree that Darwin's random mutations seem the least likely of the three, and in view of all the unanswered questions I would say that all three theories are (still) in their infancy. That is where they will remain until science comes up with some direct evidence of how innovations are caused.

Proteins, Apes & Us: dhw look!!!

by David Turell @, Sunday, April 22, 2012, 23:29 (4576 days ago) @ dhw


> I'm delighted with this reply. I see little difference between the inventive drive of DNA and the intelligence and cooperation of cells. Your inventive DNA will get nowhere if it doesn't suit a particular environment, and my inventive cell gets going when the environment is suitable. I agree that Darwin's random mutations seem the least likely of the three, and in view of all the unanswered questions I would say that all three theories are (still) in their infancy. That is where they will remain until science comes up with some direct evidence of how innovations are caused.-Deepak Chopra reviewing Dawkins latest book on science for tennagers has the following paragraph which fits our discussion:-"He ignores, either willfully or through ignorance, the evidence for directed mutagenesis first put forward by John Cairns of Harvard in 1988. John Cairns showed that if you grow bacteria with the inability to metabolize lactose, they evolve that ability in petri dishes tens of thousands of times faster than would be predicted if mutations simply occurred randomly. Professor Rudolph Tanzi of Harvard Medical School further points out that mutations in the human genome do not occur randomly but cluster in "hot spots" that are hundreds of times more likely to undergo mutation.
Could these hot spots be driving the evolution of humans according to our current need for survival? Tanzi and others are eager to speculate and thus expand Darwinsim, where Dawkins uses evolution merely as a club against superstition and organized religion -- this does a disservice to young readers and betrays the hollowness of Dawkins' allegiance to scientific objectivity. Recent evidence from whole human genome sequencing has shown that in a newborn there are roughly 30 new (de novo) mutations that were not present in mom or dad. So, for the first time, we can earnestly begin to ask whether human DNA undergoes directed mutagenesis that has been already observed in bacterial genomes. (Tanzi and I have had several conversations on how the mind may influence the flow of energy and information in living things, and beyond that to the universe as a whole.) (my bolds)-http://www.huffingtonpost.com/deepak-chopra/dawkins-magic-of-reality_b_1004216.html

RSS Feed of thread
powered by my little forum