Genome and evolvability: layers that modify (Introduction)

by David Turell , Wednesday, February 07, 2018, 19:52 (2480 days ago) @ David Turell

Described in this article:

http://www.rna-networks.at/about/

"For more than half a century it has been accepted that new genetic information is mostly derived from random‚ error-based’ events. Now it is recognized that errors cannot explain genetic novelty and complexity.

"Empirical evidence establishes the crucial role of non-random genetic content editors such as viruses and RNA-networks to create genetic novelty, complex regulatory control, inheritance vectors, genetic identity, immunity, new sequence space, evolution of complex organisms and evolutionary transitions.

"Genetic identities of RNA stem loop groups (RNA-networks) such as e.g., group I introns, group II introns, viroids, RNA viruses, retrotransposons, LTRs, non-LTRs and subviral networks such as SINEs, LINEs, Alus invade and even persist in host genomes. Also mixed consortia of RNA- and DNA-virus derived parts that integrate in host genomes have been found. Highly dynamic RNA-Protein networks such as Ribosome, Editosome and Spliceosome generate a large variety of results out of DNA content.

"Genome invading agents such a viruses and RNA-networks represent a very large and dynamic source of genetic novelty. They can co-operate, build communities, generate nucleotide sequences de novo and insert/delete them into host genetic content. Viruses and RNA-networks often remain as mobile genetic elements or similar ‚defectives’ and determine host genetic identities throughout all kingdoms including the virosphere. But inclusion of a transmissive viral biology differs fundamentally from conventional thinking in that it represents a vertical domain of life providing vast amounts of linked information not derived from direct ancestors.

"This new empirically based perspective on the evolution of genetic novelty will have more explanatory power in the future than the „error-replication“ narrative of the last century."

Comment: this summarizes the most recent voluminous findings of activities that influence the genome and the transmission of information. The genome then is less of a pristine descending tree of common descent than one that has influences coming in from the outside of the tree working with previous developments and based on the past, pushing evolution into new directions. Could easily be the way God dabbles! Thus it looks like simple common descent, specifically linked entirely to the past, but really isn't. Darwin doesn't fit, but there is no way he could have imagined all these hidden influences which destroy his theory of mechanism.