Evolution, survival and adaptation (Evolution)

by dhw, Saturday, September 02, 2017, 12:56 (2637 days ago)

I am once more telescoping overlapping threads.

Dhw: (under “Balance of nature, ants…") All forms of life have always depended on some sort of balance, and the balance is constantly shifting, which is why some species have survived and others have died out in the long history of the higgledy-piggledy bush. Thank you for this beautiful illustration of Margulis’s contention that evolution depends on cooperation as well as (if not more than) competition.
DAVID: This is why I question the significance of competition for survival as a major factor.

You questioned the concept of “survival of the fittest”. This is not just a matter of competition. Once again you seem to be equating survival with population density and totally ignoring every other environmental factor that threatens life.

QUOTE: (under “Natures wonders: bacterial adaptation”) "To survive hostile environments, an organism often has to acquire new traits.”
dhw: And yet you keep trying to tell us that survivability plays no role in evolution. Bacteria remain bacteria, but maybe other organisms acquire major new traits for the same reason, and duly become new species.
DAVID: Not that survivability 'plays no role' but a much smaller role than implied by 'survival of the fittest’.

You wrote: “Survival of the fittest is an unproven conjecture.” I consider it pure commonsense that organisms which can cope with the environment survive, and organisms which cannot cope do not survive. Once multicellularity appears, I would suggest that the development of means of survival (and I would add improvement) plays a crucial role in evolution, but perhaps you think that different ways of acquiring food, of catching prey or of defence against predators, and of countering or exploiting changes in the environment only play a small role.

Dhw (under Natural wonders: bacteria can spear amoebas): [...] I do not ask you to agree with my hypothesis – I also have reservations. I only ask you to consider it as a possibility. The mystery does not in any way support your theory that there is a supernatural power which designed flippers before pre-whales entered the water.
DAVID: If major and minor adaptations ae part of the mechanism for change, we have no evidence so far, only small epigenetic DNA changes which can be passed on to descendants. What supports my theory of a supernatural power is the obvious need for visualizing the future form and the design planning that must go into it in order for the change to be accomplished. The DNA of a completely new species may show reference to the past species, but will have very major differences in order to create the new form and function. Only design fits this.

We have had this discussion many times before, but it’s worth repeating since so much else depends on it. After much ado, you agreed some time ago that environmental factors play a major role in evolution. Minor adaptations clearly take place as a RESPONSE to environmental change. There is no visualizing of the future form, and no design planning in advance. You continue to ignore my question concerning the mechanism that makes this possible - i.e. do you think your God dabbled or preprogrammed the changes in the beaks of finches, or did their cell communities accomplish these autonomously? We agree that innovation is far more complex, and that nobody can explain it. Where we do not agree is on the likeliest order of events. You have your God planning major adaptations (innovations) in advance of environmental change, whereas I have my organisms responding to environmental change. Your version requires your God’s advance knowledge of every environmental change that entails innovation, which suggests that he has preprogrammed or manipulated the environment (local and global) as well as the structures of all the creatures that survive the changes. (We’d better leave out the great non sequitur of all this being done for the sake of the human brain!) The complications are enormous, whereas the scenario of life forms RESPONDING to environmental change, either by dying or by adapting or by producing useful new organs to exploit the changes requires only one premise: that they do the designing themselves with an intelligence which your God may have given them in the first place. We know they respond on a minor scale. Perhaps they also respond on a major scale. It’s a hypothesis, but Occam would be delighted with such a simple solution to the mystery.

Evolution, survival and adaptation

by David Turell @, Saturday, September 02, 2017, 15:20 (2637 days ago) @ dhw

DAVID: This is why I question the significance of competition for survival as a major factor.

dhw: You questioned the concept of “survival of the fittest”. This is not just a matter of competition. Once again you seem to be equating survival with population density and totally ignoring every other environmental factor that threatens life.

I don't think population density is an issue. It is something you seemed to mention and I questioned. Darwinists have math models regarding reproductivity as another issue. We've discussed Raup and environment causing extinctions. Survival of the fittest is a tautology.

dhw: We have had this discussion many times before, but it’s worth repeating since so much else depends on it. After much ado, you agreed some time ago that environmental factors play a major role in evolution. Minor adaptations clearly take place as a RESPONSE to environmental change. There is no visualizing of the future form, and no design planning in advance. You continue to ignore my question concerning the mechanism that makes this possible - i.e. do you think your God dabbled or preprogrammed the changes in the beaks of finches, or did their cell communities accomplish these autonomously?

Not so. I have stated that finch beak changes are epigenetic adaptations, a mechanism given by God.

dhw: We agree that innovation is far more complex, and that nobody can explain it. Where we do not agree is on the likeliest order of events. You have your God planning major adaptations (innovations) in advance of environmental change, whereas I have my organisms responding to environmental change.

Environmental change is only one issue. There is no evidence that humans left trees because of major climate changes. Preparatory anatomic changes for bipedalism started 23 million years ago!

dhw: Your version requires your God’s advance knowledge of every environmental change that entails innovation, which suggests that he has preprogrammed or manipulated the environment (local and global) as well as the structures of all the creatures that survive the changes. (We’d better leave out the great non sequitur of all this being done for the sake of the human brain!) The complications are enormous, whereas the scenario of life forms RESPONDING to environmental change, either by dying or by adapting or by producing useful new organs to exploit the changes requires only one premise: that they do the designing themselves with an intelligence which your God may have given them in the first place. We know they respond on a minor scale. Perhaps they also respond on a major scale. It’s a hypothesis, but Occam would be delighted with such a simple solution to the mystery.

All I can say to this mishmash is that Occam did not accept simplicity beyond all recognition. Whales entering water is an environmental change for them, but not an environmental change for the Earth. As for the brain, it evolved, a process you accept. All in a scramble to deny God.

Evolution, survival and adaptation

by dhw, Sunday, September 03, 2017, 14:12 (2636 days ago) @ David Turell

DAVID: This is why I question the significance of competition for survival as a major factor.
dhw: You questioned the concept of “survival of the fittest”. This is not just a matter of competition. Once again you seem to be equating survival with population density and totally ignoring every other environmental factor that threatens life.
DAVID: I don't think population density is an issue. It is something you seemed to mention and I questioned.

It was you who brought it up on the amoeba thread (see my post 31 August at 8.21 am), when you mistakenly assumed that survivability only entailed that one issue:
DAVID: We have no proof that survivability is a major issue due to population density, as you imply. Density is only an issue since WWII when we are displacing animal habitats.
Dhw: I do not imply population density at all! Where did you get that from?
DAVID: From your statement: " more and more new organisms came on the scene".
Dhw: "New organisms" refers to variety, not to population density. It’s a fact of evolution that more and more new organisms came on the scene once multicellularity had occurred, and I am suggesting that the variety entailed more and more new ways of surviving.

DAVID: Darwinists have math models regarding reproductivity as another issue. We've discussed Raup and environment causing extinctions. Survival of the fittest is a tautology.

It’s not a tautology (= saying the same thing twice) but it is a self-evident observation. That does not mean it plays no role, or only a small role, in the development of evolution.

dhw: We have had this discussion many times before, but it’s worth repeating since so much else depends on it. After much ado, you agreed some time ago that environmental factors play a major role in evolution. Minor adaptations clearly take place as a RESPONSE to environmental change. There is no visualizing of the future form, and no design planning in advance. You continue to ignore my question concerning the mechanism that makes this possible - i.e. do you think your God dabbled or preprogrammed the changes in the beaks of finches, or did their cell communities accomplish these autonomously?
DAVID: Not so. I have stated that finch beak changes are epigenetic adaptations, a mechanism given by God.

With my theist hat on, I am happy to accept that the mechanism for autonomous epigenetic changes may have been given by your God, i.e. that he may have given finches the autonomous means of adapting their beaks without being preprogrammed or dabbled with. So maybe he also gave pre-whales the autonomous means of adapting their legs.

dhw: We agree that innovation is far more complex, and that nobody can explain it. Where we do not agree is on the likeliest order of events. You have your God planning major adaptations (innovations) in advance of environmental change, whereas I have my organisms responding to environmental change.
DAVID: Environmental change is only one issue. There is no evidence that humans left trees because of major climate changes. Preparatory anatomic changes for bipedalism started 23 million years ago!

But it IS an issue, even if it is not the ONLY issue. You say later: “Whales entering water is an environmental change for them, but not an environmental change for the Earth.” Who says that species change can only happen if the whole Earth changes? Maybe both pre-whales and pre-humans started off in local areas where it became advantageous to enter the water or to descend from the trees. Convergent evolution suggests that local changes can lead to similar solutions in other areas. And a successful new species can spread.

dhw: Your version requires your God’s advance knowledge of every environmental change that entails innovation, which suggests that he has preprogrammed or manipulated the environment (local and global) as well as the structures of all the creatures that survive the changes. (We’d better leave out the great non sequitur of all this being done for the sake of the human brain!) The complications are enormous, whereas the scenario of life forms RESPONDING to environmental change, either by dying or by adapting or by producing useful new organs to exploit the changes requires only one premise: that they do the designing themselves with an intelligence which your God may have given them in the first place. We know they respond on a minor scale. Perhaps they also respond on a major scale. It’s a hypothesis, but Occam would be delighted with such a simple solution to the mystery.

DAVID: All I can say to this mishmash is that Occam did not accept simplicity beyond all recognition. As for the brain, it evolved, a process you accept. All in a scramble to deny God.

There is no scramble to deny God, since my hypothesis allows for God. Of course I accept that the brain evolved, as did every other organ we can think of, and since I accept that the human brain is a very special instrument, I can even allow for your God doing a dabble. But divine preprogramming or dabbling of the whole history of evolution, including by implication the history of the environment, seems to me to take complexity beyond all reason, especially when there is a simple explanation which – as you have repeatedly acknowledged – fits in perfectly with the history of life.

Evolution, survival and adaptation

by David Turell @, Sunday, September 03, 2017, 15:56 (2636 days ago) @ dhw

DAVID: Not so. I have stated that finch beak changes are epigenetic adaptations, a mechanism given by God.

dhw: With my theist hat on, I am happy to accept that the mechanism for autonomous epigenetic changes may have been given by your God, i.e. that he may have given finches the autonomous means of adapting their beaks without being preprogrammed or dabbled with. So maybe he also gave pre-whales the autonomous means of adapting their legs.

Beak size is a very simple epigenetic change (God given). Leg to flipper involves total form change. Only prior design planning and a designer (God) could do that.


dhw: We agree that innovation is far more complex, and that nobody can explain it. Where we do not agree is on the likeliest order of events. You have your God planning major adaptations (innovations) in advance of environmental change, whereas I have my organisms responding to environmental change.

DAVID: Environmental change is only one issue. There is no evidence that humans left trees because of major climate changes. Preparatory anatomic changes for bipedalism started 23 million years ago!

dhw: But it IS an issue, even if it is not the ONLY issue. You say later: “Whales entering water is an environmental change for them, but not an environmental change for the Earth.” Who says that species change can only happen if the whole Earth changes? Maybe both pre-whales and pre-humans started off in local areas where it became advantageous to enter the water or to descend from the trees. Convergent evolution suggests that local changes can lead to similar solutions in other areas. And a successful new species can spread.

There is no disagreement from me that environment change can have major effects: Chicxulub.


DAVID: All I can say to this mishmash is that Occam did not accept simplicity beyond all recognition. As for the brain, it evolved, a process you accept. All in a scramble to deny God.

dhw: There is no scramble to deny God, since my hypothesis allows for God. Of course I accept that the brain evolved, as did every other organ we can think of, and since I accept that the human brain is a very special instrument, I can even allow for your God doing a dabble. But divine preprogramming or dabbling of the whole history of evolution, including by implication the history of the environment, seems to me to take complexity beyond all reason, especially when there is a simple explanation which – as you have repeatedly acknowledged – fits in perfectly with the history of life.

God, for you, is 'beyond all reason', but if you can accept a brain dabble with bipedalism as part of it, you are accepting God's control over the last 8 million years of human evolution. Why can't all evolution be under the same God controls? Not beyond all reason.

Evolution, survival and adaptation

by dhw, Monday, September 04, 2017, 15:02 (2635 days ago) @ David Turell

I am once more juxtaposing different posts and threads as they all deal with aspects of evolution.

DAVID (under “footprints on Crete”): I think all God did was open the flood gates of different hominin types for further development. What other family of organisms did this? None! Apes made no changes.
dhw: I agree that the floodgates opened. But I thought your God was always in total control. Why bother with all these different hominin types if his primary purpose was homo sapiens?

Question not answered.

Dhw: I don’t know why you keep harping on about hominins being the only family that changed. If apes all descended from a common ancestor, there are loads of variations. Perhaps you mean that only homos developed into homo sapiens, whereas gibbons only developed into 16 species of gibbon, and none of them are homo sapiens.
DAVID: That is of course what I mean.

So apes did make lots of changes, and at one stage some of the changed apes must have changed into hominins who changed into homos who changed into homo sapiens, while other apes changed into other apes or stayed the same. Pre-gorillas became gorillas, and pre-orang-utans became orang-utans. What is your point? Do you think your God should have changed every other type of ape into homo sapiens? Why didn’t he, if he only wanted homo sapiens? Same question as above. Why all the apes, and why all the hominins?
xxxx

DAVID (under “glial cell guidance”): I'm convinced your nebulous hypothesis is just that in our theistic-mode discussion. How do you explain evolution without God present?

My hypothesis could hardly be more concrete: that cells are intelligent, and that cell communities are sufficiently intelligent to innovate (not proven) as well as to adapt (proven). But I have ALWAYS said that it is a hypothesis, and like yourself I will need more evidence before it turns into a belief. How do I explain evolution without God present? Easy. If he exists, he set up the whole mechanism and then let it run autonomously, as with finch beaks and humans, so too with all other organisms, lifestyles and natural wonders, and the environment.

DAVID: (under “glial cell guidance”) Your inventive mechanism proposal would need a human-brain-like ability as you describe above. That implies all the complexity of our brain, not found in current studies of the genome.

It would not imply human-brain-like ability. The human brain is also a collection of cells, and different cells have different functions, all of which are limited. Just as individual ants are limited but the group is able to design whole cities, groups of cells can design what individual cells cannot. I would not expect heart cells to write King Lear, but they can do things that Shakespeare would never have known about. My point is that there are different forms of intelligence with different abilities.

DAVID: Why do you constantly slough aside the point that development of complex changes, as seen in the gaps in evolution, require foresight of the future needs in order to start designing the plans for those changes?

Why do you constantly slough aside the possibility that complex changes may be a RESPONSE to environmental changes, instead of having your God foreseeing or causing every environmental change local and global and preparing organisms before the change takes place?

DAVID (on this thread): There is no disagreement from me that environment change can have major effects: Chicxulub.

Good. An effect comes after the cause. This applies both to local and to global changes. But according to you, every innovation ANTICIPATES environmental change: God changes legs to fins before pre-whales enter the water. So does that mean, for instance, that God created all the new Cambrian species before increasing the oxygen?
xxxxx

DAVID (on this thread): God, for you, is 'beyond all reason', but if you can accept a brain dabble with bipedalism as part of it, you are accepting God's control over the last 8 million years of human evolution. Why can't all evolution be under the same God controls? Not beyond all reason.

I have accepted the possibility of a brain dabble, mainly to please you, but if pressed, I would say that all the different hominins evolved naturally from some form of ape (bipedalism being a natural response to an environment in which it became advantageous to leave the trees). If there was a dabble, it would have been much later in the proceedings, perhaps as an afterthought, but I can just as easily view the human brain as a natural progression too. As regards control, yes, the whole history of life on Earth could be your God’s game, as he shifts the pieces around. You and I could also be his playthings, but we just don’t know it. Or maybe, just maybe, if he exists he allowed us to be free agents. And maybe, just maybe, if he exists, he allowed evolution to take its own course.

Evolution, survival and adaptation

by David Turell @, Monday, September 04, 2017, 17:18 (2635 days ago) @ dhw


DAVID (under “footprints on Crete”): I think all God did was open the flood gates of different hominin types for further development. What other family of organisms did this? None! Apes made no changes.
dhw: I agree that the floodgates opened. But I thought your God was always in total control. Why bother with all these different hominin types if his primary purpose was homo sapiens?

The history of evolution is it always produces bushes of organisms. Must be His method. Your human logic is not His.


dhw: Why all the apes, and why all the hominins?

Same answer. God creates bushes. Only the hominins are advanced in mentation.

xxxx

DAVID (under “glial cell guidance”): I'm convinced your nebulous hypothesis is just that in our theistic-mode discussion. How do you explain evolution without God present?

dhw: My hypothesis could hardly be more concrete: that cells are intelligent, and that cell communities are sufficiently intelligent to innovate (not proven) as well as to adapt (proven). But I have ALWAYS said that it is a hypothesis, and like yourself I will need more evidence before it turns into a belief. How do I explain evolution without God present? Easy. If he exists, he set up the whole mechanism and then let it run autonomously, as with finch beaks and humans, so too with all other organisms, lifestyles and natural wonders, and the environment.

Your same answer. Where did cellular intelligence come from if God did not do it? An inorganic universe creating intelligence on its own is beyond my belief.


DAVID: (under “glial cell guidance”) Your inventive mechanism proposal would need a human-brain-like ability as you describe above. That implies all the complexity of our brain, not found in current studies of the genome.

dhw: It would not imply human-brain-like ability. The human brain is also a collection of cells, and different cells have different functions, all of which are limited.

You are understating the complexity of the organization of the brain. The individual neurons might have specific duties, but they also have plasticity to adapt to new tasks in an multitude of new ways.

dhw:Just as individual ants are limited but the group is able to design whole cities, groups of cells can design what individual cells cannot. I would not expect heart cells to write King Lear, but they can do things that Shakespeare would never have known about. My point is that there are different forms of intelligence with different abilities.

Your nebulous point is based on what Shapiro finds in bacteria. It is a giant jump to cell committees speciating.


DAVID: Why do you constantly slough aside the point that development of complex changes, as seen in the gaps in evolution, require foresight of the future needs in order to start designing the plans for those changes?

dhw: Why do you constantly slough aside the possibility that complex changes may be a RESPONSE to environmental changes, instead of having your God foreseeing or causing every environmental change local and global and preparing organisms before the change takes place?

Of course the change must be a response, but you still ignoring the necessity for foresight and planning to solve the new problems, not possible at a cellular level. Your house was built by a plan, not thrown together. The same with new organisms, planning and design required either by your cell committees or by God.


DAVID (on this thread): There is no disagreement from me that environment change can have major effects: Chicxulub.

dhw: Good. An effect comes after the cause. This applies both to local and to global changes. But according to you, every innovation ANTICIPATES environmental change: God changes legs to fins before pre-whales enter the water. So does that mean, for instance, that God created all the new Cambrian species before increasing the oxygen?

Twisting my approach. I just presented Chicxulub as a prime example of change requiring adaptation. We don't know if Whales had flippers on land, like sea lions or seals, but perhaps that is a change God used to put whales in water. Only whales came directly from land animals. As for the Cambrian the evidence is oxygen came first to support it, the explosion second.

xxxxx


dhw: I have accepted the possibility of a brain dabble, mainly to please you, but if pressed, I would say that all the different hominins evolved naturally from some form of ape (bipedalism being a natural response to an environment in which it became advantageous to leave the trees). If there was a dabble, it would have been much later in the proceedings, perhaps as an afterthought, but I can just as easily view the human brain as a natural progression too. As regards control, yes, the whole history of life on Earth could be your God’s game, as he shifts the pieces around. You and I could also be his playthings, but we just don’t know it. Or maybe, just maybe, if he exists he allowed us to be free agents. And maybe, just maybe, if he exists, he allowed evolution to take its own course.

Written like a true agnostic.

Evolution, survival and adaptation

by dhw, Tuesday, September 05, 2017, 13:32 (2634 days ago) @ David Turell

dhw: I thought your God was always in total control. Why bother with all these different hominin types if his primary purpose was homo sapiens?
DAVID: The history of evolution is it always produces bushes of organisms. Must be His method. Your human logic is not His.

We know the history, and I’m pleased to see you acknowledge the illogicality of your interpretation. I therefore wonder why you are not prepared to accept the possibility that God’s logic might be the same as ours, and it is your interpretation that is wrong.
xxxx
dhw: How do I explain evolution without God present? Easy. If he exists, he set up the whole mechanism and then let it run autonomously, as with finch beaks and humans, so too with all other organisms, lifestyles and natural wonders, and the environment.
DAVID: Your same answer. Where did cellular intelligence come from if God did not do it? An inorganic universe creating intelligence on its own is beyond my belief.

If your God set up the autonomous mechanism, then your God set up the autonomous mechanism. The subject here is the existence of the autonomous mechanism (as opposed to a divine 3.8-billion-year computer programme or divine dabbling), and not the existence of God.

DAVID: Your inventive mechanism proposal would need a human-brain-like ability as you describe above. That implies all the complexity of our brain, not found in current studies of the genome.
dhw: It would not imply human-brain-like ability. The human brain is also a collection of cells, and different cells have different functions, all of which are limited.
DAVID: You are understating the complexity of the organization of the brain. The individual neurons might have specific duties, but they also have plasticity to adapt to new tasks in an multitude of new ways.

Of course they do. One of their functions is to adapt to new tasks!

dhw: […] My point is that there are different forms of intelligence with different abilities.
DAVID: Your nebulous point is based on what Shapiro finds in bacteria. It is a giant jump to cell committees speciating.

Nothing nebulous, and yes it is based on what a number of scientists have found in cells (hardly a reason for rejecting it), and yes it is a giant jump – just as it is a giant jump from the complexity of life to a sourceless, eternal, infinite, conscious being that creates universes and micro-organisms but keeps itself hidden. Both are hypotheses for which there is no conclusive evidence.

dhw: Why do you constantly slough aside the possibility that complex changes may be a RESPONSE to environmental changes, instead of having your God foreseeing or causing every environmental change local and global and preparing organisms before the change takes place?
DAVID: Of course the change must be a response, but you still ignoring the necessity for foresight and planning to solve the new problems, not possible at a cellular level.

Cells solve new problems all the time. (But see the proviso below.) Adaptation to new conditions is a proven process, and I find it difficult to believe that bacteria have prior knowledge of new problems and plan the responses in advance. I find it equally difficult to believe that your God provided them with a computer programme to cover every possible new problem, or that he pops down to give them instructions.

DAVID: Your house was built by a plan, not thrown together. The same with new organisms, planning and design required either by your cell committees or by God.

We are not talking about a house. We are talking about responses to a changing environment. See above. But always with the proviso that major innovations are a mystery, and my hypothesis is an unproven extension of an existing mechanism.

DAVID (on this thread): There is no disagreement from me that environment change can have major effects: Chicxulub.
dhw: Good. An effect comes after the cause. This applies both to local and to global changes. But according to you, every innovation ANTICIPATES environmental change: God changes legs to fins before pre-whales enter the water. So does that mean, for instance, that God created all the new Cambrian species before increasing the oxygen?
DAVID: Twisting my approach. I just presented Chicxulub as a prime example of change requiring adaptation. We don't know if Whales had flippers on land, like sea lions or seals, but perhaps that is a change God used to put whales in water. Only whales came directly from land animals. As for the Cambrian the evidence is oxygen came first to support it, the explosion second.

Why is this a twist? You are acknowledging that environmental change can precede organismal change. Previously you have insisted that your God prepared whales for life in the water. I’m delighted that you are now acknowledging the possibility that the changes took place after whales entered the water, and I would suggest that this order of events is the norm. No foresight, no planning, but organisms (which consist of cell communities) responding to challenges and opportunities.

Evolution, survival and adaptation

by David Turell @, Tuesday, September 05, 2017, 17:51 (2634 days ago) @ dhw

DAVID: The history of evolution is it always produces bushes of organisms. Must be His method. Your human logic is not His.

dhw: We know the history, and I’m pleased to see you acknowledge the illogicality of your interpretation.

I have said nothing illogical. God does what He wants.

xxxx

DAVID: Your same answer. Where did cellular intelligence come from if God did not do it? An inorganic universe creating intelligence on its own is beyond my belief.

dhw: If your God set up the autonomous mechanism, then your God set up the autonomous mechanism. The subject here is the existence of the autonomous mechanism (as opposed to a divine 3.8-billion-year computer programme or divine dabbling), and not the existence of God.

You've avoided the question. Without God where does intelligent foresight come from?

DAVID: You are understating the complexity of the organization of the brain. The individual neurons might have specific duties, but they also have plasticity to adapt to new tasks in an multitude of new ways.

dhw: Of course they do. One of their functions is to adapt to new tasks!

Given by consciousness/soul. They do not initiate.

DAVID: Your house was built by a plan, not thrown together. The same with new organisms, planning and design required either by your cell committees or by God.

dhw: We are not talking about a house. We are talking about responses to a changing environment. See above. But always with the proviso that major innovations are a mystery, and my hypothesis is an unproven extension of an existing mechanism.

Your answer again ignores the concept of foresight and planning to arrange for new advances or adaptations.

DAVID: Twisting my approach. I just presented Chicxulub as a prime example of change requiring adaptation. We don't know if Whales had flippers on land, like sea lions or seals, but perhaps that is a change God used to put whales in water. Only whales came directly from land animals. As for the Cambrian the evidence is oxygen came first to support it, the explosion second.

dhw: Why is this a twist? You are acknowledging that environmental change can precede organismal change. Previously you have insisted that your God prepared whales for life in the water. I’m delighted that you are now acknowledging the possibility that the changes took place after whales entered the water, and I would suggest that this order of events is the norm. No foresight, no planning, but organisms (which consist of cell communities) responding to challenges and opportunities.

Yes, they just do it. That is your answer. Unbelievable. Planning and foresight are never needed prior to arranging for complex changes. Totally illogical.

Evolution, survival and adaptation

by dhw, Wednesday, September 06, 2017, 13:38 (2633 days ago) @ David Turell

Dhw: I thought your God was always in total control. Why bother with all these different hominin types if his primary purpose was homo sapiens?
DAVID: The history of evolution is it always produces bushes of organisms. Must be His method. Your human logic is not His.
dhw: We know the history, and I’m pleased to see you acknowledge the illogicality of your interpretation.
DAVID: I have said nothing illogical. God does what He wants.

So your always-in-control God’s method of fulfilling his primary purpose (the human brain) was to produce a bush. My human logic suggests that a primary purpose would normally be fulfilled as directly as possible, but although you can’t explain why he created all these different hominins, not to mention the whales and the rest of the bush, you happen to know that God’s logic is different from human logic, and so you are not prepared to consider the possibility that the bush itself might have been his primary purpose.
xxxx

DAVID: Your same answer. Where did cellular intelligence come from if God did not do it? An inorganic universe creating intelligence on its own is beyond my belief.
dhw: If your God set up the autonomous mechanism, then your God set up the autonomous mechanism. The subject here is the existence of the autonomous mechanism (as opposed to a divine 3.8-billion-year computer programme or divine dabbling), and not the existence of God.
DAVID: You've avoided the question. Without God where does intelligent foresight come from?

I keep disputing “foresight”, as below. Where does intelligence come from? I have always acknowledged that it may come from your God. I don’t know. That is why I am an agnostic.

DAVID: You are understating the complexity of the organization of the brain. The individual neurons might have specific duties, but they also have plasticity to adapt to new tasks in an multitude of new ways.
dhw: Of course they do. One of their functions is to adapt to new tasks!
DAVID: Given by consciousness/soul. They do not initiate.

Adapting to new tasks does not mean initiating. The soul as initiator = dualism, as opposed to materialism, but that is not the point here, since we are debating whether your God preprogrammed or dabbled every evolutionary change, or (theistic version) gave organisms the intelligence to do it themselves.

DAVID: Your house was built by a plan, not thrown together. The same with new organisms, planning and design required either by your cell committees or by God.
dhw: We are not talking about a house. We are talking about responses to a changing environment. See above. But always with the proviso that major innovations are a mystery, and my hypothesis is an unproven extension of an existing mechanism.
DAVID: Your answer again ignores the concept of foresight and planning to arrange for new advances or adaptations.

I am not ignoring it. I am disputing it. My whole hypothesis is based on intelligent organisms RESPONDING to new challenges and/or opportunities, instead of your God preprogramming them in advance or dabbling with them. The response comes AFTER the challenge/new opportunity.

DAVID: Yes, they just do it. That is your answer. Unbelievable. Planning and foresight are never needed prior to arranging for complex changes. Totally illogical.

No, not prior to. There is nothing illogical in the argument that organisms ADAPT to changing conditions. It is a proven fact. The open question is how far they can take that process. I like your example of the whale, because I see each stage as a logical progression in the whale’s adaptation to life in the water. Not your God preprogramming or dabbling eight different changes (and it’s not clear anyway when he would actually have pushed the pre-whales into the water). What is unbelievable to you is that cell communities should be able to make major changes to themselves, although you accept minor changes. But nobody knows how the major changes took place. We only have different hypotheses: 1) random mutations; 2) a divine 3.8-billion-year-old computer programme plus divine dabbling; 3) cellular intelligence (origin unknown but possibly your God). And it takes faith to turn a hypothesis into a belief. I sometimes wonder if your hostility to (3) might be connected to your unwillingness to question your fixed belief in (2).

Evolution, survival and adaptation

by David Turell @, Wednesday, September 06, 2017, 15:11 (2633 days ago) @ dhw

DAVID: I have said nothing illogical. God does what He wants.


So your always-in-control God’s method of fulfilling his primary purpose (the human brain) was to produce a bush. My human logic suggests that a primary purpose would normally be fulfilled as directly as possible, but although you can’t explain why he created all these different hominins, not to mention the whales and the rest of the bush, you happen to know that God’s logic is different from human logic, and so you are not prepared to consider the possibility that the bush itself might have been his primary purpose.

The amazing human brain is His obvious purpose. Bushiness is the unavoidable history.

xxxx

DAVID: Your answer again ignores the concept of foresight and planning to arrange for new advances or adaptations.

dhw: I am not ignoring it. I am disputing it. My whole hypothesis is based on intelligent organisms RESPONDING to new challenges and/or opportunities, instead of your God preprogramming them in advance or dabbling with them. The response comes AFTER the challenge/new opportunity.

You have again ignored the need for foresight and planning. How do intelligent organisms accomplish major adaptive changes without those mental processes? I'm not discussing the adaptive level of finch beaks. Of course the required change might be a challenge or opportunity. The impetus is not the point!


DAVID: Yes, they just do it. That is your answer. Unbelievable. Planning and foresight are never needed prior to arranging for complex changes. Totally illogical.

dhw: No, not prior to. There is nothing illogical in the argument that organisms ADAPT to changing conditions. It is a proven fact. The open question is how far they can take that process. I like your example of the whale, because I see each stage as a logical progression in the whale’s adaptation to life in the water. Not your God preprogramming or dabbling eight different changes (and it’s not clear anyway when he would actually have pushed the pre-whales into the water). What is unbelievable to you is that cell communities should be able to make major changes to themselves, although you accept minor changes. But nobody knows how the major changes took place. We only have different hypotheses: 1) random mutations; 2) a divine 3.8-billion-year-old computer programme plus divine dabbling; 3) cellular intelligence (origin unknown but possibly your God). And it takes faith to turn a hypothesis into a belief. I sometimes wonder if your hostility to (3) might be connected to your unwillingness to question your fixed belief in (2).

Cellular intelligence is the result of intelligent instructions in the DNA. 3) is a pipedream.

Evolution, survival and adaptation

by dhw, Thursday, September 07, 2017, 10:52 (2632 days ago) @ David Turell

DAVID: I have said nothing illogical. God does what He wants.
dhw: So your always-in-control God’s method of fulfilling his primary purpose (the human brain) was to produce a bush. My human logic suggests that a primary purpose would normally be fulfilled as directly as possible, but although you can’t explain why he created all these different hominins, not to mention the whales and the rest of the bush, you happen to know that God’s logic is different from human logic, and so you are not prepared to consider the possibility that the bush itself might have been his primary purpose.
DAVID: The amazing human brain is His obvious purpose. Bushiness is the unavoidable history.

God wanted to produce the human brain, and so he could not avoid producing dinosaurs, whales, monarch butterflies and the weaverbird’s nest. I understand why you think God’s logic is different from ours.
xxxx
DAVID: Your answer again ignores the concept of foresight and planning to arrange for new advances or adaptations.
dhw: I am not ignoring it. I am disputing it. My whole hypothesis is based on intelligent organisms RESPONDING to new challenges and/or opportunities, instead of your God preprogramming them in advance or dabbling with them. The response comes AFTER the challenge/new opportunity.
DAVID: You have again ignored the need for foresight and planning. How do intelligent organisms accomplish major adaptive changes without those mental processes? I'm not discussing the adaptive level of finch beaks. Of course the required change might be a challenge or opportunity. The impetus is not the point!

Taking your favourite example of the whale, here’s how:

PRE-WHALE: Dammit, there ain’t no food around here. Wonder what’s in the water. (Wades out to sea.) Wowee, look at all them thar fishes. (Gobbles his fill and returns to land.) I reckon we’d be a darn sight better off livin’ in the water than starvin’ out here. I’m goin’ back in again.

PRE-WHALE CELL COMMUNITIES (exchanging messages): Looks like we’m in for a big change here. It ain’t workin’ too good for you leggy folk. We need ter get you more like what them fishy folk have – y’know, them finny, flippy things. Means makin’ quite a few adjustments, but hey, we c’n do it. Dammit, if them thar finches c’n change the shape o’ their beaks, we c’n change the shape of our legs. So let’s do it…

(They do it. Repeat the dialogue for noses/blowholes, and all the other changes.)

Contrast this with the Turell scenario:

PRE-WHALE: What the heck’s happenin’ to me? Why is my legs turnin’ into flippers? Jumpin’ Jiminy, I’d better go live in the water.
(Repeat the dialogue for noses/blowholes and all the other changes, apart from the last line, as pre-whale may already have gone to live in the water…except that all the other changes are supposed to have been planned in advance as well and not as a result of his entering the water. Pre-whale to improvise last line until scenario is clarified.)

Evolution, survival and adaptation

by David Turell @, Thursday, September 07, 2017, 14:36 (2632 days ago) @ dhw

dhw: I am not ignoring it. I am disputing it. My whole hypothesis is based on intelligent organisms RESPONDING to new challenges and/or opportunities, instead of your God preprogramming them in advance or dabbling with them. The response comes AFTER the challenge/new opportunity.
DAVID: You have again ignored the need for foresight and planning. How do intelligent organisms accomplish major adaptive changes without those mental processes? I'm not discussing the adaptive level of finch beaks. Of course the required change might be a challenge or opportunity. The impetus is not the point!

dhw: Taking your favourite example of the whale, here’s how:

PRE-WHALE: Dammit, there ain’t no food around here. Wonder what’s in the water. (Wades out to sea.) Wowee, look at all them thar fishes. (Gobbles his fill and returns to land.) I reckon we’d be a darn sight better off livin’ in the water than starvin’ out here. I’m goin’ back in again.

PRE-WHALE CELL COMMUNITIES (exchanging messages): Looks like we’m in for a big change here. It ain’t workin’ too good for you leggy folk. We need ter get you more like what them fishy folk have – y’know, them finny, flippy things. Means makin’ quite a few adjustments, but hey, we c’n do it. Dammit, if them thar finches c’n change the shape o’ their beaks, we c’n change the shape of our legs. So let’s do it…

(They do it. Repeat the dialogue for noses/blowholes, and all the other changes.)

Contrast this with the Turell scenario:

PRE-WHALE: What the heck’s happenin’ to me? Why is my legs turnin’ into flippers? Jumpin’ Jiminy, I’d better go live in the water.
(Repeat the dialogue for noses/blowholes and all the other changes, apart from the last line, as pre-whale may already have gone to live in the water…except that all the other changes are supposed to have been planned in advance as well and not as a result of his entering the water. Pre-whale to improvise last line until scenario is clarified.)

Very cute but shoves all the complexity of change under the rug.

Evolution, survival and adaptation

by dhw, Friday, September 08, 2017, 14:21 (2631 days ago) @ David Turell

dhw: [….]
PRE-WHALE CELL COMMUNITIES (exchanging messages): Looks like we’m in for a big change here. It ain’t workin’ too good for you leggy folk. We need ter get you more like what them fishy folk have – y’know, them finny, flippy things. Means makin’ quite a few adjustments, but hey, we c’n do it. Dammit, if them thar finches c’n change the shape o’ their beaks, we c’n change the shape of our legs. So let’s do it…

(They do it. Repeat the dialogue for noses/blowholes, and all the other changes.)

Contrast this with the Turell scenario:

PRE-WHALE: What the heck’s happenin’ to me? Why is my legs turnin’ into flippers? Jumpin’ Jiminy, I’d better go live in the water.
(Repeat the dialogue for noses/blowholes and all the other changes, apart from the last line, as pre-whale may already have gone to live in the water…except that all the other changes are supposed to have been planned in advance as well and not as a result of his entering the water. Pre-whale to improvise last line until scenario is clarified.)

DAVID: Very cute but shoves all the complexity of change under the rug.

The need for clarification of the Turell scenario has been shoved under the rug.

Evolution, survival and adaptation

by David Turell @, Friday, September 08, 2017, 21:00 (2631 days ago) @ dhw

dhw: [….]
PRE-WHALE CELL COMMUNITIES (exchanging messages): Looks like we’m in for a big change here. It ain’t workin’ too good for you leggy folk. We need ter get you more like what them fishy folk have – y’know, them finny, flippy things. Means makin’ quite a few adjustments, but hey, we c’n do it. Dammit, if them thar finches c’n change the shape o’ their beaks, we c’n change the shape of our legs. So let’s do it…

(They do it. Repeat the dialogue for noses/blowholes, and all the other changes.)

Contrast this with the Turell scenario:

PRE-WHALE: What the heck’s happenin’ to me? Why is my legs turnin’ into flippers? Jumpin’ Jiminy, I’d better go live in the water.
(Repeat the dialogue for noses/blowholes and all the other changes, apart from the last line, as pre-whale may already have gone to live in the water…except that all the other changes are supposed to have been planned in advance as well and not as a result of his entering the water. Pre-whale to improvise last line until scenario is clarified.)

DAVID: Very cute but shoves all the complexity of change under the rug.

dhw: The need for clarification of the Turell scenario has been shoved under the rug.

Behind the curtain of your play, God is whispering to the whales-to-be, " I'd like you to live in water and I'll supply the changes. Want to try?"

Evolution, survival and adaptation

by dhw, Saturday, September 09, 2017, 10:42 (2630 days ago) @ David Turell

dhw: PRE-WHALE: What the heck’s happenin’ to me? Why is my legs turnin’ into flippers? Jumpin’ Jiminy, I’d better go live in the water.
(Repeat the dialogue for noses/blowholes and all the other changes, apart from the last line, as pre-whale may already have gone to live in the water…except that all the other changes are supposed to have been planned in advance as well and not as a result of his entering the water. Pre-whale to improvise last line until scenario is clarified.)

DAVID: Very cute but shoves all the complexity of change under the rug.

dhw: The need for clarification of the Turell scenario has been shoved under the rug.

DAVID: Behind the curtain of your play, God is whispering to the whales-to-be, "I'd like you to live in water and I'll supply the changes. Want to try?"

Nice of him to give them the choice. However, we still don’t know why he wanted pre-whales to live in water when his primary purpose was to produce the human brain. And we still don’t know why he made the changes in so many different stages. And since you have him planning everything in advance, and not making the changes as a RESULT of their entering the water, we still don’t at which stage they actually did start living in water. Do you think at Stage 1 he said: “You got your fins. Go live in the water.” Then at Stage 2: “Come on out o’ there now, cos it’s time for me to give you a blowhole.” Or: “Dammit, I make the darnedest mistakes. I’m comin’ in to give you guys a blowhole.”

Evolution, survival and adaptation

by David Turell @, Saturday, September 09, 2017, 14:45 (2630 days ago) @ dhw

dhw: PRE-WHALE: What the heck’s happenin’ to me? Why is my legs turnin’ into flippers? Jumpin’ Jiminy, I’d better go live in the water.
(Repeat the dialogue for noses/blowholes and all the other changes, apart from the last line, as pre-whale may already have gone to live in the water…except that all the other changes are supposed to have been planned in advance as well and not as a result of his entering the water. Pre-whale to improvise last line until scenario is clarified.)

DAVID: Very cute but shoves all the complexity of change under the rug.

dhw: The need for clarification of the Turell scenario has been shoved under the rug.

DAVID: Behind the curtain of your play, God is whispering to the whales-to-be, "I'd like you to live in water and I'll supply the changes. Want to try?"

dhw: Nice of him to give them the choice. However, we still don’t know why he wanted pre-whales to live in water when his primary purpose was to produce the human brain. And we still don’t know why he made the changes in so many different stages. And since you have him planning everything in advance, and not making the changes as a RESULT of their entering the water, we still don’t at which stage they actually did start living in water. Do you think at Stage 1 he said: “You got your fins. Go live in the water.” Then at Stage 2: “Come on out o’ there now, cos it’s time for me to give you a blowhole.” Or: “Dammit, I make the darnedest mistakes. I’m comin’ in to give you guys a blowhole.”

This whole whale play doesn't get to the point of why bother to create such a major physiologic mess that required so many major bodily changes and physiological alterations. It happened and is miraculous.

Evolution, survival and adaptation

by dhw, Sunday, September 10, 2017, 13:55 (2629 days ago) @ David Turell

DAVID: Behind the curtain of your play, God is whispering to the whales-to-be, "I'd like you to live in water and I'll supply the changes. Want to try?"

dhw: Nice of him to give them the choice. However, we still don’t know why he wanted pre-whales to live in water when his primary purpose was to produce the human brain. And we still don’t know why he made the changes in so many different stages. And since you have him planning everything in advance, and not making the changes as a RESULT of their entering the water, we still don’t at which stage they actually did start living in water. Do you think at Stage 1 he said: “You got your fins. Go live in the water.” Then at Stage 2: “Come on out o’ there now, cos it’s time for me to give you a blowhole.” Or: “Dammit, I make the darnedest mistakes. I’m comin’ in to give you guys a blowhole.”

DAVID: This whole whale play doesn't get to the point of why bother to create such a major physiologic mess that required so many major bodily changes and physiological alterations. It happened and is miraculous.

The point of the whale play is to emphasize what a major physiologic and theological mess your theory creates. It’s a mess because you have no idea why your God should have done it that way, or what it has to do with his prime purpose of creating the human brain. The mess disappears if you accept the possibility that pre-whales may have had good reason to enter the water (e.g. more food), and adapted to life in the water in different stages, thanks to their cell communities using their (possibly God-given) intelligence, as you agree they do when changes are minor (e.g. finches’ beaks).

Evolution, survival and adaptation

by David Turell @, Sunday, September 10, 2017, 15:30 (2629 days ago) @ dhw


DAVID: This whole whale play doesn't get to the point of why bother to create such a major physiologic mess that required so many major bodily changes and physiological alterations. It happened and is miraculous.

dhw: The point of the whale play is to emphasize what a major physiologic and theological mess your theory creates. It’s a mess because you have no idea why your God should have done it that way, or what it has to do with his prime purpose of creating the human brain. The mess disappears if you accept the possibility that pre-whales may have had good reason to enter the water (e.g. more food), and adapted to life in the water in different stages, thanks to their cell communities using their (possibly God-given) intelligence, as you agree they do when changes are minor (e.g. finches’ beaks).

Finch beaks are epigenetic. Whales are speciation. The two are not equivalent. You can't use beaks to explain whales. You have stretched cell intelligent responses beyond all recognition.

Evolution, strange prehistoric ants

by David Turell @, Sunday, September 10, 2017, 23:38 (2629 days ago) @ David Turell

Powerful jaws and a metallic unicorn horn:

https://www.newscientist.com/article/2146821-meet-the-vampire-ant-from-hell-with-huge-j...

"A newly discovered species of prehistoric “hell ant” had anatomy that lived up to its demonic name, including a lethal feeding apparatus reinforced with metal.

"Hell ants are an extinct lineage from the Cretaceous Period. Instead of regular mouthparts, they had upward-facing blades.

No living species have such facial anatomy. However, the hairs around hell ants’ mouths are reminiscent of hairs on modern trap-jaw ants that cause their mouths to snap shut when triggered. This has led to speculation that the hell ants’ mouthparts worked in a similar way.

"Some also had a horn-like appendage that jutted out over their tusk-like mandibles. This includes the new species, Linguamyrmex vladi, which Phillip Barden at the New Jersey Institute of Technology in Newark and his colleagues found preserved in 98-million-year-old amber.

"It may be that when another insect brushed the trigger hairs, the blade-like mandibles flipped up and impaled the prey against the horn, punching through its outer layer. “You have this sort of stopping plate, made to accommodate the mandibles closing and capturing prey,” says Barden.


"That’s not all. CT scans revealed that L. vladi’s horn was reinforced with metal.

“'Probably the metal helps to keep the horn undamaged,” says Vincent Perrichot at the University of Rennes 1 in France. In 2016, he published a description of another horned hell ant, which he called a “unicorn ant”.

“'It makes sense to reinforce that [appendage],” agrees Barden, since the horn must have had to withstand repeated impacts from the mandibles. Some modern insects reduce wear and tear in a similar way, by reinforcing their mandibles with metals like zinc and iron.

"As well as being a metal-reinforced unicorn, L. vladi may have been a vampire. When their mandibles moved upwards, they formed a “gutter”. “That might be something that developed to funnel haemolymph – insect blood – down through the mouthparts,” says Barden.

"Next to the ant, Barden’s team found a preserved beetle grub – exactly the kind of “squishy, haemolymph-laden insect” that could support a vampiric lifestyle. Perhaps it was next on the menu.

"But the metal-reinforced horn suggests that the ants’ jaws moved with enough power to penetrate the tougher cuticles of adult insects as well.

“'Until we find a specimen with the prey item trapped, which is probably a matter of time, we’re left to speculate,” says Barden. However, the Myanmar amber deposits where he found his specimen are so rich that more detailed observations are likely to emerge."

Comment: Wow! I wouldn't want this ant at my picnic.

Evolution, survival and adaptation

by dhw, Monday, September 11, 2017, 13:16 (2628 days ago) @ David Turell

DAVID: This whole whale play doesn't get to the point of why bother to create such a major physiologic mess that required so many major bodily changes and physiological alterations. It happened and is miraculous.

dhw: The point of the whale play is to emphasize what a major physiologic and theological mess your theory creates. It’s a mess because you have no idea why your God should have done it that way, or what it has to do with his prime purpose of creating the human brain. The mess disappears if you accept the possibility that pre-whales may have had good reason to enter the water (e.g. more food), and adapted to life in the water in different stages, thanks to their cell communities using their (possibly God-given) intelligence, as you agree they do when changes are minor (e.g. finches’ beaks).

DAVID: Finch beaks are epigenetic. Whales are speciation. The two are not equivalent. You can't use beaks to explain whales. You have stretched cell intelligent responses beyond all recognition.

Epigenetic changes are heritable changes most likely caused by environmental factors. Nobody knows how speciation takes place. It is possible that the same mechanism which causes small changes also caused the unexplained large changes. Finches needed different beaks to cope with different environments. Whale legs were modified into fins for the same reason. The difference between the two is one of scale, not of basic principle. But it remains a hypothesis, as does your divine 3.8-billion-year computer programme and/or divine dabbling, all somehow geared to the production of the human brain. The advantage of my hypothesis is that it removes the physiological, philosophical and theological mess engendered by yours.

Evolution, survival and adaptation

by David Turell @, Monday, September 11, 2017, 17:59 (2628 days ago) @ dhw

DAVID: Finch beaks are epigenetic. Whales are speciation. The two are not equivalent. You can't use beaks to explain whales. You have stretched cell intelligent responses beyond all recognition.

dhw: Epigenetic changes are heritable changes most likely caused by environmental factors. Nobody knows how speciation takes place. It is possible that the same mechanism which causes small changes also caused the unexplained large changes. Finches needed different beaks to cope with different environments. Whale legs were modified into fins for the same reason. The difference between the two is one of scale, not of basic principle. But it remains a hypothesis, as does your divine 3.8-billion-year computer programme and/or divine dabbling, all somehow geared to the production of the human brain. The advantage of my hypothesis is that it removes the physiological, philosophical and theological mess engendered by yours.

Agree it is a matter of scale. I don't view my views as illogical. My theology is God is in charge.

Evolution, survival and adaptation

by dhw, Tuesday, September 12, 2017, 12:07 (2627 days ago) @ David Turell

DAVID: Finch beaks are epigenetic. Whales are speciation. The two are not equivalent. You can't use beaks to explain whales. You have stretched cell intelligent responses beyond all recognition.

dhw: Epigenetic changes are heritable changes most likely caused by environmental factors. Nobody knows how speciation takes place. It is possible that the same mechanism which causes small changes also caused the unexplained large changes. Finches needed different beaks to cope with different environments. Whale legs were modified into fins for the same reason. The difference between the two is one of scale, not of basic principle. But it remains a hypothesis, as does your divine 3.8-billion-year computer programme and/or divine dabbling, all somehow geared to the production of the human brain. The advantage of my hypothesis is that it removes the physiological, philosophical and theological mess engendered by yours.

DAVID: Agree it is a matter of scale. I don't view my views as illogical. My theology is God is in charge.

Thank you for your agreement. As you have admitted you don’t understand why your God kept messing around with pre-whales, I presume your logic is that God is in charge, and therefore it’s logical that God messed around with pre-whales though you don’t know why. My sense of logic requires coherent reasoning, e.g. that whales wanted more food, entered the water to get it, and their bodies adapted stage by stage to life in the water. And your God may have given their cell communities the ability to make the necessary adjustments, as with finches and their beaks, but on a much larger scale.

Evolution, survival and adaptation

by David Turell @, Tuesday, September 12, 2017, 15:32 (2627 days ago) @ dhw


DAVID: Agree it is a matter of scale. I don't view my views as illogical. My theology is God is in charge.

dhw: Thank you for your agreement. As you have admitted you don’t understand why your God kept messing around with pre-whales, I presume your logic is that God is in charge, and therefore it’s logical that God messed around with pre-whales though you don’t know why. My sense of logic requires coherent reasoning, e.g. that whales wanted more food, entered the water to get it, and their bodies adapted stage by stage to life in the water. And your God may have given their cell communities the ability to make the necessary adjustments, as with finches and their beaks, but on a much larger scale.

You sense of logic doesn't explain polar bears who swim about eating seafood and never change. And if God can offer cell communities the biochemical knowledge to make major phenotypic and physiologic changes, why does your logic require a two step mechanism? He can do it directly Himself, can't He?

Evolution, survival and adaptation

by dhw, Wednesday, September 13, 2017, 13:30 (2626 days ago) @ David Turell

DAVID: Agree it is a matter of scale. I don't view my views as illogical. My theology is God is in charge.

dhw: Thank you for your agreement. As you have admitted you don’t understand why your God kept messing around with pre-whales, I presume your logic is that God is in charge, and therefore it’s logical that God messed around with pre-whales though you don’t know why. My sense of logic requires coherent reasoning, e.g. that whales wanted more food, entered the water to get it, and their bodies adapted stage by stage to life in the water. And your God may have given their cell communities the ability to make the necessary adjustments, as with finches and their beaks, but on a much larger scale.

DAVID: You sense of logic doesn't explain polar bears who swim about eating seafood and never change. And if God can offer cell communities the biochemical knowledge to make major phenotypic and physiologic changes, why does your logic require a two step mechanism? He can do it directly Himself, can't He?

Polar bears don’t live in the water. They can get ample food without changing. Pre-whales presumably couldn’t. I don’t know what you’re referring to with your ‘two-step mechanism’. Cell communities would take as many steps as are needed to reach optimum efficiency. Hence all the different finch beaks and all the different stages of whale. But your God could have created the final whale directly, without any steps, so why didn’t he?

Evolution, survival and adaptation

by David Turell @, Thursday, September 14, 2017, 01:34 (2626 days ago) @ dhw


DAVID: You sense of logic doesn't explain polar bears who swim about eating seafood and never change. And if God can offer cell communities the biochemical knowledge to make major phenotypic and physiologic changes, why does your logic require a two step mechanism? He can do it directly Himself, can't He?

dhw: Polar bears don’t live in the water. They can get ample food without changing. Pre-whales presumably couldn’t. I don’t know what you’re referring to with your ‘two-step mechanism’.

Two steps are: step one, God gives the organisms the info to make their own changes, and step two, the organisms make the changes.

dhw: Cell communities would take as many steps as are needed to reach optimum efficiency. Hence all the different finch beaks and all the different stages of whale. But your God could have created the final whale directly, without any steps, so why didn’t he?

God obviously prefers to evolve organisms. Why all the steps to H. sapiens I might point out to you. It is his pattern of action.

Evolution, survival and adaptation

by dhw, Thursday, September 14, 2017, 13:19 (2625 days ago) @ David Turell

DAVID: You sense of logic doesn't explain polar bears who swim about eating seafood and never change. And if God can offer cell communities the biochemical knowledge to make major phenotypic and physiologic changes, why does your logic require a two step mechanism? He can do it directly Himself, can't He?

dhw: Polar bears don’t live in the water. They can get ample food without changing. Pre-whales presumably couldn’t. I don’t know what you’re referring to with your ‘two-step mechanism’.

DAVID: Two steps are: step one, God gives the organisms the info to make their own changes, and step two, the organisms make the changes.

Thank you. I am never happy with your use of “info” as you sometimes turn it into instructions. My hypothesis is that he has given them the autonomous means (subsumed under “intelligence”) of gathering their own info, of processing it, and of then making the changes.

dhw: Cell communities would take as many steps as are needed to reach optimum efficiency. Hence all the different finch beaks and all the different stages of whale. But your God could have created the final whale directly, without any steps, so why didn’t he?

DAVID: God obviously prefers to evolve organisms. Why all the steps to H. sapiens I might point out to you. It is his pattern of action.

What I keep pointing out to you is the illogicality of your know-it-all God having the prime purpose of producing Homo sapiens and his brain, and yet going all round the mulberry bush to do it – not just with all the other hominins and homos but also with all the lifestyles and natural wonders you insist can only be produced by him. Why could his pattern of action not be to set the wheels of evolution in motion and see where they lead (though granting himself the odd dabble when he feels like it)? THAT hypothesis fits the history of life and accounts for every twig extant and extinct of life’s great bush.

Evolution, survival and adaptation

by David Turell @, Thursday, September 14, 2017, 16:08 (2625 days ago) @ dhw

dhw: Cell communities would take as many steps as are needed to reach optimum efficiency. Hence all the different finch beaks and all the different stages of whale. But your God could have created the final whale directly, without any steps, so why didn’t he?

DAVID: God obviously prefers to evolve organisms. Why all the steps to H. sapiens I might point out to you. It is his pattern of action.

dhw: What I keep pointing out to you is the illogicality of your know-it-all God having the prime purpose of producing Homo sapiens and his brain, and yet going all round the mulberry bush to do it – not just with all the other hominins and homos but also with all the lifestyles and natural wonders you insist can only be produced by him. Why could his pattern of action not be to set the wheels of evolution in motion and see where they lead (though granting himself the odd dabble when he feels like it)? THAT hypothesis fits the history of life and accounts for every twig extant and extinct of life’s great bush.

What doesn't fit your theory is the obvious driven portion of evolution. The bush of hominins leading to sapiens has no underlying apparent causative drive, but in the DNA of these folks are found hot spots of mutations, noted in a previous entry. Why not a God who drives evolution? After all He created a life-giving universe. If He has that power why stop and watch as you imply?

Evolution, survival and adaptation

by dhw, Friday, September 15, 2017, 13:29 (2624 days ago) @ David Turell

Once again I am telescoping threads.

Dhw (under “misfolded protein problems”): It is because we don’t know about lots of things that we formulate hypotheses. Yours seem to change from day to day. You now seem to be taking it for granted that God has limits. Not so long ago, he was all-powerful and always in control. Why not acknowledge the possibility (which is all it can be) that what we have IS God’s goal – namely, a massive free-for-all, full of nice and nasty, good and evil, joy and sadness, birth and death, extinction and survival?

DAVID: Obviously I don't see that your conclusion fits the arrival of H. sapiens, but yours does include free will and the chaos it creates. Birth and death, extinctions are requirements of evolution. Your view of God's limits may be requirements of evolving life as a method of creation. As for my apparent changeability, it is the result of your probing questions, requiring me to explore my own theories and consolidate ideas.

Not a conclusion but a hypothesis, and these are not my views of your God’s limits. They are yours, as you constantly shift your ground. My proposal is that your God is NOT limited, and that he deliberately created a free-for-all, i.e. did not WANT to control every twist and turn of evolution. This removes all the convolutions that arise from your anthropocentrism, which is the theory you want to consolidate but can’t. So I am simply asking you to consider an alternative.

DAVID: What doesn't fit your theory is the obvious driven portion of evolution. The bush of hominins leading to sapiens has no underlying apparent causative drive, but in the DNA of these folks are found hot spots of mutations, noted in a previous entry. Why not a God who drives evolution? After all He created a life-giving universe. If He has that power why stop and watch as you imply?

My theory is that evolution is driven by the twin fuels of survival and improvement. There is a perfectly natural progression from use of tools to use of more sophisticated tools to ways of making life more comfortable to ways of making life even more comfortable. This doesn’t solve the great mystery of consciousness, which I accept might stem from a God. As for stopping and watching, it is you who tell us that your God is hidden. Of course he has the power to do what he likes, so ask yourself why there is a higgledy-piggledy bush instead of a straight line to Homo sapiens, and why your God hides, and maybe the answer is that he wanted a higgledy-piggledy bush and once he had set the wheels in motion, he wanted to stop and watch. If he exists, he’s created a great show.

Evolution, survival and adaptation

by David Turell @, Friday, September 15, 2017, 15:29 (2624 days ago) @ dhw

dhw: Not a conclusion but a hypothesis, and these are not my views of your God’s limits. They are yours, as you constantly shift your ground. My proposal is that your God is NOT limited, and that he deliberately created a free-for-all, i.e. did not WANT to control every twist and turn of evolution. This removes all the convolutions that arise from your anthropocentrism, which is the theory you want to consolidate but can’t. So I am simply asking you to consider an alternative.

I don't view myself as shifting at all in my basic premise that God is in charge. And we agree He uses an evolutionary mechanism that creates a marvelously inventive bush of life.


DAVID: What doesn't fit your theory is the obvious driven portion of evolution. The bush of hominins leading to sapiens has no underlying apparent causative drive, but in the DNA of these folks are found hot spots of mutations, noted in a previous entry. Why not a God who drives evolution? After all He created a life-giving universe. If He has that power why stop and watch as you imply?

dhw: My theory is that evolution is driven by the twin fuels of survival and improvement. There is a perfectly natural progression from use of tools to use of more sophisticated tools to ways of making life more comfortable to ways of making life even more comfortable. This doesn’t solve the great mystery of consciousness, which I accept might stem from a God. As for stopping and watching, it is you who tell us that your God is hidden. Of course he has the power to do what he likes, so ask yourself why there is a higgledy-piggledy bush instead of a straight line to Homo sapiens, and why your God hides, and maybe the answer is that he wanted a higgledy-piggledy bush and once he had set the wheels in motion, he wanted to stop and watch. If he exists, he’s created a great show.

We both know God is hidden. You can't find Him at all. As for the bush I've accepted God's approach of evolving complex organisms rather than the six day Genesis story. Note He had first to evolve a universe with exploding stars to spread around the necessary life-creating element molecules from their fiery fusion furnaces. God evolves what He wants to create. That conclusion cannot be avoided. As for your theory, what fuels evolution of life is a mechanism that knows how to change for the better, not nebulous concepts of survival and improvement. You are touting purpose, which is fine sounding, but it is obvious that speciation requires foresight and planning by a mental process, in God's brain.

Evolution, survival and adaptation

by dhw, Saturday, September 16, 2017, 13:03 (2623 days ago) @ David Turell

dhw: Not a conclusion but a hypothesis, and these are not my views of your God’s limits. They are yours, as you constantly shift your ground. My proposal is that your God is NOT limited, and that he deliberately created a free-for-all, i.e. did not WANT to control every twist and turn of evolution. This removes all the convolutions that arise from your anthropocentrism, which is the theory you want to consolidate but can’t. So I am simply asking you to consider an alternative.

DAVID: I don't view myself as shifting at all in my basic premise that God is in charge. And we agree He uses an evolutionary mechanism that creates a marvelously inventive bush of life.

If God exists, then of course he is in charge, and of course we agree that he used evolution, and of course we agree that evolution has resulted in a great big bush. Where we don’t agree is that God personally designed every twig of the bush although his prime purpose was to produce Homo sapiens and his brain. THAT is the theory you keep trying to consolidate, and in doing so find yourself shifting ground with every anomaly it throws up.

DAVID: What doesn't fit your theory is the obvious driven portion of evolution. […] Why not a God who drives evolution? After all He created a life-giving universe. If He has that power why stop and watch as you imply?

dhw: My theory is that evolution is driven by the twin fuels of survival and improvement. […] Of course he has the power to do what he likes, so ask yourself why there is a higgledy-piggledy bush instead of a straight line to Homo sapiens, and why your God hides, and maybe the answer is that he wanted a higgledy-piggledy bush and once he had set the wheels in motion, he wanted to stop and watch. If he exists, he’s created a great show.

DAVID: We both know God is hidden. You can't find Him at all. As for the bush I've accepted God's approach of evolving complex organisms rather than the six day Genesis story. Note He had first to evolve a universe with exploding stars to spread around the necessary life-creating element molecules from their fiery fusion furnaces. God evolves what He wants to create. That conclusion cannot be avoided.

As above, the question concerns what he wanted to create. With my theist hat on, I suggest he wanted to create an ever changing show which perhaps he continues to watch. You suggest he wanted to create Homo sapiens, you don’t know why he had to create a higgledy-piggledy bush of whales and monarchs and weaverbirds’ nests and hominins in order to get there, and he’s hidden himself because…well, why has he hidden himself, and is he watching or not?

DAVID: As for your theory, what fuels evolution of life is a mechanism that knows how to change for the better, not nebulous concepts of survival and improvement.

Changing for the better IS improvement! And I don’t see anything nebulous in the concept of survival.

DAVID: You are touting purpose, which is fine sounding, but it is obvious that speciation requires foresight and planning by a mental process, in God's brain.

God’s brain (does he have one?) could have provided the mental process by which organisms work out their own path to speciation. And that process can be one of response and not crystal-ball gazing.

Evolution, survival and adaptation

by David Turell @, Saturday, September 16, 2017, 15:17 (2623 days ago) @ dhw


DAVID: I don't view myself as shifting at all in my basic premise that God is in charge. And we agree He uses an evolutionary mechanism that creates a marvelously inventive bush of life.

dhw: If God exists, then of course he is in charge, and of course we agree that he used evolution, and of course we agree that evolution has resulted in a great big bush. Where we don’t agree is that God personally designed every twig of the bush although his prime purpose was to produce Homo sapiens and his brain. THAT is the theory you keep trying to consolidate, and in doing so find yourself shifting ground with every anomaly it throws up.

You cannot get around the evidence that the pinnacle of evolution is the human brain, making it an obvious goal. That is all the evidence I need. Look at your own words. If He used evolution and it created a great bush, it was His work. all perfectly logical.

DAVID: We both know God is hidden. You can't find Him at all. As for the bush I've accepted God's approach of evolving complex organisms rather than the six day Genesis story. Note He had first to evolve a universe with exploding stars to spread around the necessary life-creating element molecules from their fiery fusion furnaces. God evolves what He wants to create. That conclusion cannot be avoided.

dhw: As above, the question concerns what he wanted to create. With my theist hat on, I suggest he wanted to create an ever changing show which perhaps he continues to watch. You suggest he wanted to create Homo sapiens, you don’t know why he had to create a higgledy-piggledy bush of whales and monarchs and weaverbirds’ nests and hominins in order to get there, and he’s hidden himself because…well, why has he hidden himself, and is he watching or not?

I recognize those are your questions which keep you agnostic. Accepting God's existence does away with your issues. How logical is God in human terms? Perhaps not at all.


DAVID: You are touting purpose, which is fine sounding, but it is obvious that speciation requires foresight and planning by a mental process, in God's brain.

dhw: God’s brain (does he have one?) could have provided the mental process by which organisms work out their own path to speciation. And that process can be one of response and not crystal-ball gazing.

You can't build a house without a plan. Crystal-ball gazing is required. "Their own path to speciation" response must be a step by step attempt, which cannot produce highly complex physiology or phenotypic change all at once, as the fossil gaps show. You cannot avoid the need for design.

Evolution, survival and adaptation

by dhw, Sunday, September 17, 2017, 10:40 (2622 days ago) @ David Turell

DAVID: You cannot get around the evidence that the pinnacle of evolution is the human brain, making it an obvious goal. That is all the evidence I need. Look at your own words. If He used evolution and it created a great bush, it was His work. all perfectly logical.

I have looked at my own words. If God exists, his work resulted in a great bush and in the brain of Homo sapiens. Of course it’s logical, if God exists. However, the theistic question is the nature of the work, as follows:

dhw: […] the question concerns what he wanted to create. With my theist hat on, I suggest he wanted to create an ever changing show which perhaps he continues to watch. You suggest he wanted to create Homo sapiens, you don’t know why he had to create a higgledy-piggledy bush of whales and monarchs and weaverbirds’ nests and hominins in order to get there, and he’s hidden himself because…well, why has he hidden himself, and is he watching or not?

DAVID: I recognize those are your questions which keep you agnostic. Accepting God's existence does away with your issues. How logical is God in human terms? Perhaps not at all.

They are not the questions that keep me agnostic. They are the questions I ask when I put on my theist hat, and you cannot answer them because they pinpoint the anomalies in your anthropocentric theory of evolution and your personal concept of your God.

DAVID: You are touting purpose, which is fine sounding, but it is obvious that speciation requires foresight and planning by a mental process, in God's brain.
dhw: God’s brain (does he have one?) could have provided the mental process by which organisms work out their own path to speciation. And that process can be one of response and not crystal-ball gazing.
DAVID: You can't build a house without a plan. Crystal-ball gazing is required. "Their own path to speciation" response must be a step by step attempt, which cannot produce highly complex physiology or phenotypic change all at once, as the fossil gaps show. You cannot avoid the need for design.

We are not talking about house-building but about how organisms change. Nobody understands the latter. But we actually see it happening in cases of minor adaptation, and this is in RESPONSE to environmental change. If it is not rapid, organisms will die. We have no idea how swiftly organisms can make major changes to themselves. You simply assume they can’t do it. You may be right, and you may be wrong – it is a hypothesis. I don’t know why you think I am avoiding the need for design. I am only questioning the need for your God to do all the designing. (And to please you, I can even allow for the odd dabble, which might include sapiens’ brain, though as I pointed out earlier, I can see that as a perfectly logical progression from earlier brains.) For instance, I see no reason why – in his quest to produce the human brain – he should have taken the trouble to design eight stages of whale, to guide the monarch butterfly to its distant destination (having also fiddled with its reproductive cycle), and to give the weaverbird private lessons in nest-building.

(This post also answers the points made under “revisiting convergence”.)`

Evolution, survival and adaptation

by David Turell @, Sunday, September 17, 2017, 15:34 (2622 days ago) @ dhw


DAVID: I recognize those are your questions which keep you agnostic. Accepting God's existence does away with your issues. How logical is God in human terms? Perhaps not at all.

dhw: They are not the questions that keep me agnostic. They are the questions I ask when I put on my theist hat, and you cannot answer them because they pinpoint the anomalies in your anthropocentric theory of evolution and your personal concept of your God.

Your theistic hat contains a human attempt to be logical about God, rather than accepting the evidence that God's works offer. He can only be understood from what we see He created and how it seems He did it.

DAVID: You can't build a house without a plan. Crystal-ball gazing is required. "Their own path to speciation" response must be a step by step attempt, which cannot produce highly complex physiology or phenotypic change all at once, as the fossil gaps show. You cannot avoid the need for design.

dhw: We are not talking about house-building but about how organisms change. Nobody understands the latter. But we actually see it happening in cases of minor adaptation, and this is in RESPONSE to environmental change. If it is not rapid, organisms will die. We have no idea how swiftly organisms can make major changes to themselves. You simply assume they can’t do it. You may be right, and you may be wrong – it is a hypothesis. I don’t know why you think I am avoiding the need for design. I am only questioning the need for your God to do all the designing. (And to please you, I can even allow for the odd dabble, which might include sapiens’ brain, though as I pointed out earlier, I can see that as a perfectly logical progression from earlier brains.) For instance, I see no reason why – in his quest to produce the human brain – he should have taken the trouble to design eight stages of whale, to guide the monarch butterfly to its distant destination (having also fiddled with its reproductive cycle), and to give the weaverbird private lessons in nest-building.

You are not avoiding design, but trying to find ways around the principals of how design occurs. You know how it occurs in human terms on Earth today. Since you don't like the concept of God, the hidden eternal engineer of reality, you want a mechanism to appear, by itself, which must be by chance, after life appears (somehow, but lets avoid that miracle), that speciates with huge gaps in the fossil record. The fossil record leaps and jumps. Why don't you restart your thinking from that point of view? I find the basic footprints of your theories planted firmly in mid air.

Evolution, survival and adaptation

by dhw, Monday, September 18, 2017, 10:11 (2622 days ago) @ David Turell

dhw: With my theist hat on, I suggest he wanted to create an ever changing show which perhaps he continues to watch. You suggest he wanted to create Homo sapiens, you don’t know why he had to create a higgledy-piggledy bush of whales and monarchs and weaverbirds’ nests and hominins in order to get there, and he’s hidden himself because…well, why has he hidden himself, and is he watching or not?

DAVID: I recognize those are your questions which keep you agnostic. Accepting God's existence does away with your issues. How logical is God in human terms? Perhaps not at all.
dhw: They are not the questions that keep me agnostic. They are the questions I ask when I put on my theist hat, and you cannot answer them because they pinpoint the anomalies in your anthropocentric theory of evolution and your personal concept of your God.

DAVID: Your theistic hat contains a human attempt to be logical about God, rather than accepting the evidence that God's works offer. He can only be understood from what we see He created and how it seems He did it.

Of course my logic is human, but what makes you think it is not based on the evidence that your God’s works offer? Even you have agreed that my hypothesis fits in perfectly with the history of life as we know it! Yours doesn’t, which is why you don't answer the questions raised at the head of this post.

DAVID: You are not avoiding design, but trying to find ways around the principals of how design occurs. You know how it occurs in human terms on Earth today. Since you don't like the concept of God, the hidden eternal engineer of reality, you want a mechanism to appear, by itself, which must be by chance, after life appears (somehow, but lets avoid that miracle), that speciates with huge gaps in the fossil record.

Hey, hold on! Design occurs through intelligence, and I am proposing that all organisms are intelligent in their own particular way. Who says I don’t like the concept of God? I am an agnostic, not an atheist. I do not “want a mechanism that appears by itself by chance”! Its origin is a mystery, which is why I always specify that the mechanism may have been invented by your God. This is the unworthy digression you always indulge in when I challenge your version of how evolution works and of what your God’s purpose might be. That is why I put on my theist’s hat, so that we can begin with the same basic premise.

DAVID: The fossil record leaps and jumps. Why don't you restart your thinking from that point of view? I find the basic footprints of your theories planted firmly in mid air.

If your God was capable of preprogramming every leap and jump 3.8 billion years ago, I’m sure he was also capable of producing a mechanism that would do its own leaping and jumping. Once more: I am not excluding your God. I am challenging your hypothesis that your God designed every twig on the higgledy-piggledy bush, and that he did so in order to fulfil his primary purpose of producing the human brain.

Evolution, survival and adaptation

by David Turell @, Monday, September 18, 2017, 17:49 (2621 days ago) @ dhw

dhw: With my theist hat on, I suggest he wanted to create an ever changing show which perhaps he continues to watch. You suggest he wanted to create Homo sapiens, you don’t know why he had to create a higgledy-piggledy bush of whales and monarchs and weaverbirds’ nests and hominins in order to get there, and he’s hidden himself because…well, why has he hidden himself, and is he watching or not?

We know he's there because only a designing mind could have created life. We don't know if He is watching, but since He is in charge, I'm sure he is. Why create and n ot watch the outcomes?


DAVID: You are not avoiding design, but trying to find ways around the principals of how design occurs. You know how it occurs in human terms on Earth today. Since you don't like the concept of God, the hidden eternal engineer of reality, you want a mechanism to appear, by itself, which must be by chance, after life appears (somehow, but lets avoid that miracle), that speciates with huge gaps in the fossil record.

dhw: Hey, hold on! Design occurs through intelligence, and I am proposing that all organisms are intelligent in their own particular way. Who says I don’t like the concept of God? I am an agnostic, not an atheist. I do not “want a mechanism that appears by itself by chance”! Its origin is a mystery, which is why I always specify that the mechanism may have been invented by your God. This is the unworthy digression you always indulge in when I challenge your version of how evolution works and of what your God’s purpose might be. That is why I put on my theist’s hat, so that we can begin with the same basic premise.

We don't start with the same basic premise. Your theist hat is skewed, and you don't realize it. For example I don't know why God made the whales but I can sure He did because of the obvious design planning that must be done to span each gap between the eight stages. You want organisms to be their own architects to jump to the next species. Your theory fits only minor adaptations in existing species.


DAVID: The fossil record leaps and jumps. Why don't you restart your thinking from that point of view? I find the basic footprints of your theories planted firmly in mid air.

dhw: If your God was capable of preprogramming every leap and jump 3.8 billion years ago, I’m sure he was also capable of producing a mechanism that would do its own leaping and jumping. Once more: I am not excluding your God. I am challenging your hypothesis that your God designed every twig on the higgledy-piggledy bush, and that he did so in order to fulfil his primary purpose of producing the human brain.

Either way, under your theory, God is in charge. don't you realize that?

Evolution, survival and adaptation

by dhw, Tuesday, September 19, 2017, 11:53 (2620 days ago) @ David Turell

DAVID: We know he's there because only a designing mind could have created life. We don't know if He is watching, but since He is in charge, I'm sure he is. Why create and not watch the outcomes?

We don’t “know” anything, but if he is there, and you believe he is watching but stays hidden, is it not possible that he started the show off because he wanted a show he could watch? What do you think would be more interesting: a lot of robots doing precisely what you have instructed them to do, or a free-for-all with unpredictable outcomes?

dhw: Design occurs through intelligence, and I am proposing that all organisms are intelligent in their own particular way. Who says I don’t like the concept of God? I am an agnostic, not an atheist. I do not “want a mechanism that appears by itself by chance”! Its origin is a mystery, which is why I always specify that the mechanism may have been invented by your God. This is the unworthy digression you always indulge in when I challenge your version of how evolution works and of what your God’s purpose might be. That is why I put on my theist’s hat, so that we can begin with the same basic premise.

DAVID: We don't start with the same basic premise. Your theist hat is skewed, and you don't realize it. For example I don't know why God made the whales but I can sure He did because of the obvious design planning that must be done to span each gap between the eight stages. You want organisms to be their own architects to jump to the next species. Your theory fits only minor adaptations in existing species.

The basic premise is that God exists and does what he wants to do. You go on to say your God designed the eight stages of whale and you don’t know why. I go on to say your God gave the whale the intelligence to adapt of its own accord to a new environment which would improve its way of life (possibly even to ensure its survival). You go on to say that your God’s prime purpose was to create Homo sapiens’ brain. I go on to say that doesn’t fit in with the higgledy-piggledy bush of evolution’s history. A free-for-all fits in perfectly (though he can still dabble if he wants to). I have agreed that we do not know if my hypothesis concerning the DEGREE of organismal intelligence is correct. Nor do we know if your hypothesis concerning a 3.8-billion-year computer programme for the whole of evolutionary history is correct. Same basic premise, different interpretation of how it applies to evolution.

DAVID: Either way, under your theory, God is in charge. don't you realize that?

Dhw: (Saturday 16 September at 13.03): If God exists, then of course he is in charge, and of course we agree that he used evolution, and of course we agree that evolution has resulted in a great big bush. Where we don’t agree is that God personally designed every twig of the bush although his prime purpose was to produce Homo sapiens and his brain. THAT is the theory you keep trying to consolidate, and in doing so find yourself shifting ground with every anomaly it throws up.
I stand by every word of my earlier post.

Evolution, survival and adaptation

by David Turell @, Tuesday, September 19, 2017, 14:57 (2620 days ago) @ dhw

DAVID: We know he's there because only a designing mind could have created life. We don't know if He is watching, but since He is in charge, I'm sure he is. Why create and not watch the outcomes?

dhw: We don’t “know” anything, but if he is there, and you believe he is watching but stays hidden, is it not possible that he started the show off because he wanted a show he could watch? What do you think would be more interesting: a lot of robots doing precisely what you have instructed them to do, or a free-for-all with unpredictable outcomes?

So God is like a sports spectator! How humanizing.


DAVID: We don't start with the same basic premise. Your theist hat is skewed, and you don't realize it. For example I don't know why God made the whales but I can sure He did because of the obvious design planning that must be done to span each gap between the eight stages. You want organisms to be their own architects to jump to the next species. Your theory fits only minor adaptations in existing species.

The basic premise is that God exists and does what he wants to do. You go on to say your God designed the eight stages of whale and you don’t know why. I go on to say your God gave the whale the intelligence to adapt of its own accord to a new environment which would improve its way of life (possibly even to ensure its survival). You go on to say that your God’s prime purpose was to create Homo sapiens’ brain. I go on to say that doesn’t fit in with the higgledy-piggledy bush of evolution’s history. A free-for-all fits in perfectly (though he can still dabble if he wants to). I have agreed that we do not know if my hypothesis concerning the DEGREE of organismal intelligence is correct. Nor do we know if your hypothesis concerning a 3.8-billion-year computer programme for the whole of evolutionary history is correct. Same basic premise, different interpretation of how it applies to evolution.

DAVID: Either way, under your theory, God is in charge. don't you realize that?

Dhw: (Saturday 16 September at 13.03): If God exists, then of course he is in charge, and of course we agree that he used evolution, and of course we agree that evolution has resulted in a great big bush. Where we don’t agree is that God personally designed every twig of the bush although his prime purpose was to produce Homo sapiens and his brain. THAT is the theory you keep trying to consolidate, and in doing so find yourself shifting ground with every anomaly it throws up.
dhw: I stand by every word of my earlier post.

And I stand by my interpretations.

Evolution, survival and adaptation

by dhw, Wednesday, September 20, 2017, 13:37 (2619 days ago) @ David Turell

DAVID: We know he's there because only a designing mind could have created life. We don't know if He is watching, but since He is in charge, I'm sure he is. Why create and not watch the outcomes?

dhw: We don’t “know” anything, but if he is there, and you believe he is watching but stays hidden, is it not possible that he started the show off because he wanted a show he could watch? What do you think would be more interesting: a lot of robots doing precisely what you have instructed them to do, or a free-for-all with unpredictable outcomes?

DAVID: So God is like a sports spectator! How humanizing.

You said above that you thought he was watching: “Why create and not watch the outcomes?” So please give us your theory as to why he’s watching if he’s not interested in what’s happening, like a sports spectator.

Evolution, survival and adaptation

by David Turell @, Wednesday, September 20, 2017, 15:01 (2619 days ago) @ dhw

DAVID: We know he's there because only a designing mind could have created life. We don't know if He is watching, but since He is in charge, I'm sure he is. Why create and not watch the outcomes?

dhw: We don’t “know” anything, but if he is there, and you believe he is watching but stays hidden, is it not possible that he started the show off because he wanted a show he could watch? What do you think would be more interesting: a lot of robots doing precisely what you have instructed them to do, or a free-for-all with unpredictable outcomes?

DAVID: So God is like a sports spectator! How humanizing.

dhw: You said above that you thought he was watching: “Why create and not watch the outcomes?” So please give us your theory as to why he’s watching if he’s not interested in what’s happening, like a sports spectator.

I don't think He watches in a human way.

Evolution, survival and adaptation

by dhw, Thursday, September 21, 2017, 13:06 (2618 days ago) @ David Turell

DAVID: We know he's there because only a designing mind could have created life. We don't know if He is watching, but since He is in charge, I'm sure he is. Why create and not watch the outcomes?

dhw: We don’t “know” anything, but if he is there, and you believe he is watching but stays hidden, is it not possible that he started the show off because he wanted a show he could watch? What do you think would be more interesting: a lot of robots doing precisely what you have instructed them to do, or a free-for-all with unpredictable outcomes?

DAVID: So God is like a sports spectator! How humanizing.

dhw: You said above that you thought he was watching: “Why create and not watch the outcomes?” So please give us your theory as to why he’s watching if he’s not interested in what’s happening, like a sports spectator.

DAVID: I don't think He watches in a human way.

So when you asked: “Why create and not watch the outcomes?” what did you mean by “watch”? If it means looking at what is happening, and it's reasonable for him to look at what is happening, why would it not be reasonable to assume that he is interested in what is happening?

Evolution, survival and adaptation

by David Turell @, Thursday, September 21, 2017, 15:14 (2618 days ago) @ dhw

DAVID: So God is like a sports spectator! How humanizing.

dhw: You said above that you thought he was watching: “Why create and not watch the outcomes?” So please give us your theory as to why he’s watching if he’s not interested in what’s happening, like a sports spectator.

DAVID: I don't think He watches in a human way.

dhw: So when you asked: “Why create and not watch the outcomes?” what did you mean by “watch”? If it means looking at what is happening, and it's reasonable for him to look at what is happening, why would it not be reasonable to assume that he is interested in what is happening?

Of course interested, but in His own way, not humanized

Evolution, survival and adaptation

by dhw, Friday, September 22, 2017, 13:19 (2617 days ago) @ David Turell

DAVID: So God is like a sports spectator! How humanizing.

dhw: You said above that you thought he was watching: “Why create and not watch the outcomes?” So please give us your theory as to why he’s watching if he’s not interested in what’s happening, like a sports spectator.

DAVID: I don't think He watches in a human way.

dhw: So when you asked: “Why create and not watch the outcomes?” what did you mean by “watch”? If it means looking at what is happening, and it's reasonable for him to look at what is happening, why would it not be reasonable to assume that he is interested in what is happening?

DAVID: Of course interested, but in His own way, not humanized.

So he creates a show and watches it with interest. I’ll settle for that and leave you to imagine what sort of watching is different from human watching, and what sort of interest is different from human interest.

Evolution, survival and adaptation

by David Turell @, Friday, September 22, 2017, 15:03 (2617 days ago) @ dhw

DAVID: So God is like a sports spectator! How humanizing.

dhw: You said above that you thought he was watching: “Why create and not watch the outcomes?” So please give us your theory as to why he’s watching if he’s not interested in what’s happening, like a sports spectator.

DAVID: I don't think He watches in a human way.

dhw: So when you asked: “Why create and not watch the outcomes?” what did you mean by “watch”? If it means looking at what is happening, and it's reasonable for him to look at what is happening, why would it not be reasonable to assume that he is interested in what is happening?

DAVID: Of course interested, but in His own way, not humanized.

dhw: So he creates a show and watches it with interest. I’ll settle for that and leave you to imagine what sort of watching is different from human watching, and what sort of interest is different from human interest.

It is obvious I do not know, and do not try because He is a personality like none other.

Evolution, survival and adaptation

by dhw, Saturday, September 23, 2017, 12:48 (2616 days ago) @ David Turell

DAVID: I don't think He watches in a human way.

dhw: So when you asked: “Why create and not watch the outcomes?” what did you mean by “watch”? If it means looking at what is happening, and it's reasonable for him to look at what is happening, why would it not be reasonable to assume that he is interested in what is happening?

DAVID: Of course interested, but in His own way, not humanized.

dhw: So he creates a show and watches it with interest. I’ll settle for that and leave you to imagine what sort of watching is different from human watching, and what sort of interest is different from human interest.

DAVID: It is obvious I do not know, and do not try because He is a personality like none other.

How do you know he is a personality like none other? How do you know that his way of watching the show and his interest in it is not precisely the same as our way of watching and being interested? If, as some folk believe, he made us in his image, then it stands to reason that we reflect his image. You have even argued that our consciousness is a piece of his consciousness, which returns to him when we die. So how do you know that a piece of his consciousness is unlike his consciousness?

Evolution, survival and adaptation

by David Turell @, Saturday, September 23, 2017, 14:38 (2616 days ago) @ dhw

DAVID: I don't think He watches in a human way.

dhw: So when you asked: “Why create and not watch the outcomes?” what did you mean by “watch”? If it means looking at what is happening, and it's reasonable for him to look at what is happening, why would it not be reasonable to assume that he is interested in what is happening?

DAVID: Of course interested, but in His own way, not humanized.

dhw: So he creates a show and watches it with interest. I’ll settle for that and leave you to imagine what sort of watching is different from human watching, and what sort of interest is different from human interest.

DAVID: It is obvious I do not know, and do not try because He is a personality like none other.

dhw: How do you know he is a personality like none other? How do you know that his way of watching the show and his interest in it is not precisely the same as our way of watching and being interested? If, as some folk believe, he made us in his image, then it stands to reason that we reflect his image. You have even argued that our consciousness is a piece of his consciousness, which returns to him when we die. So how do you know that a piece of his consciousness is unlike his consciousness?

As to his personality I'm quoting Adler, whose teachings I follow. As for consciousness, the basic mechanism may be the same but the personal thought process different. We may well use it differently.

Evolution, survival and adaptation

by dhw, Sunday, September 24, 2017, 13:22 (2615 days ago) @ David Turell

DAVID: Of course interested, but in His own way, not humanized.

dhw: So he creates a show and watches it with interest. I’ll settle for that and leave you to imagine what sort of watching is different from human watching, and what sort of interest is different from human interest.

DAVID: It is obvious I do not know, and do not try because He is a personality like none other.

dhw: How do you know he is a personality like none other? How do you know that his way of watching the show and his interest in it is not precisely the same as our way of watching and being interested? If, as some folk believe, he made us in his image, then it stands to reason that we reflect his image. You have even argued that our consciousness is a piece of his consciousness, which returns to him when we die. So how do you know that a piece of his consciousness is unlike his consciousness?

DAVID: As to his personality I'm quoting Adler, whose teachings I follow. As for consciousness, the basic mechanism may be the same but the personal thought process different. We may well use it differently.

So how do you and your teacher Adler know your God is a personality like none other and indulges in a kind of watching and interest that is different from ours?

Evolution, survival and adaptation

by David Turell @, Sunday, September 24, 2017, 14:43 (2615 days ago) @ dhw


DAVID: As to his personality I'm quoting Adler, whose teachings I follow. As for consciousness, the basic mechanism may be the same but the personal thought process different. We may well use it differently.

dhw: So how do you and your teacher Adler know your God is a personality like none other and indulges in a kind of watching and interest that is different from ours?

It is an assumption based on the seeming powers, yet remoteness, of God

Evolution, survival and adaptation

by dhw, Monday, September 25, 2017, 13:21 (2614 days ago) @ David Turell

DAVID: As to his personality I'm quoting Adler, whose teachings I follow. As for consciousness, the basic mechanism may be the same but the personal thought process different. We may well use it differently.

dhw: So how do you and your teacher Adler know your God is a personality like none other and indulges in a kind of watching and interest that is different from ours?

DAVID: It is an assumption based on the seeming powers, yet remoteness, of God.

Why do you assume that watching and being interested in his own creation has a different meaning for your God just because he is all-powerful and remote? I do wish you and Adler would explain what you think the words might mean to him. If you can’t, then why not assume that when you say your God is watching and is interested, he is "watching" and is "interested"?

Evolution, survival and adaptation

by David Turell @, Monday, September 25, 2017, 14:31 (2614 days ago) @ dhw

DAVID: As to his personality I'm quoting Adler, whose teachings I follow. As for consciousness, the basic mechanism may be the same but the personal thought process different. We may well use it differently.

dhw: So how do you and your teacher Adler know your God is a personality like none other and indulges in a kind of watching and interest that is different from ours?

DAVID: It is an assumption based on the seeming powers, yet remoteness, of God.

dhw: Why do you assume that watching and being interested in his own creation has a different meaning for your God just because he is all-powerful and remote? I do wish you and Adler would explain what you think the words might mean to him. If you can’t, then why not assume that when you say your God is watching and is interested, he is "watching" and is "interested"?

Because we think He does it in His own particular way.

Evolution, survival and adaptation

by dhw, Tuesday, September 26, 2017, 12:10 (2613 days ago) @ David Turell

dhw: So how do you and your teacher Adler know your God is a personality like none other and indulges in a kind of watching and interest that is different from ours?

DAVID: It is an assumption based on the seeming powers, yet remoteness, of God.

dhw: Why do you assume that watching and being interested in his own creation has a different meaning for your God just because he is all-powerful and remote? I do wish you and Adler would explain what you think the words might mean to him. If you can’t, then why not assume that when you say your God is watching and is interested, he is "watching" and is "interested"?

DAVID: Because we think He does it in His own particular way.

I’ll settle for that. Your God created life and evolution to provide himself with a show which, like all of us, he could watch with interest in his own particular way.

Evolution, survival and adaptation

by dhw, Friday, September 29, 2017, 13:29 (2610 days ago) @ dhw

Once more I am bringing different threads together, as the arguments interlink.

DAVID’s comment (under "frog self-protection"): Unless these moths had these chemicals from the beginning of their species, they would not be here now. I think they were designed to be protected this way.
dhw: […] is it just possible that the now acknowledged capability for autonomous design was in operation for both the frog and the moth?
DAVID: You keep pushing your idea that God gave organisms the ability to speciate or to create irreducibly complex mechanisms. I have specifically, in both comments above, specified the need for design. And as always it is programmed from the beginning or it is a dabble. The 'capability for autonomous design' is epigenetic adaptation at the level we have discovered.

Thank you for answering my question: you believe that 3.8 billion years ago your God either provided the first living cells with a programme for the poisonous frogs and moths, or he specially created these variations in existing frogs and moths (assuming you still believe in common descent). This leads to the following point:

dhw (under “frog adaptation”):Clearly they have nothing to do with producing the brain of Homo sapiens, and you have agreed that “balance of nature” means nothing more than that life goes on, regardless of whether humans are there or not. So could it be that you are now saying your God specially designs all these things for the sake of the show (of which humans are simply one part), which he watches with interest in his own special way?
DAVID: I've not changed and neither have you. Balance of nature is absolutely necessary to produce the human brain, exactly to keep solve the issue of 'life goes on' by providing the necessary energy supply.

And so your all-powerful God could not have provided the necessary energy supply to produce the human brain without preprogramming/dabbling the poisonous moths and frogs, the weaverbird’s nest, the eight stages of whale, the monarch butterfly’s life cycle, plus all the innovations, lifestyles and natural wonders that no longer exist. And this makes sense to you?

DAVID: The brain is the current endpoint of evolution. The possibility of a 'show' is your side issue. I see God full of purpose, not theatrics, which might be a favorite subject of yours as a playwright.

What purpose? All you offer is H. sapiens’ brain! (You did once mention a desire to communicate with us, but that became a problem with our interlocutor being hidden.) I have suggested purposes for individual organisms and for your God producing the whole bush of evolution AND the human brain. You wrote: “We don’t know if he is watching, but since he is in charge, I’m sure he is. Why create and not watch the outcomes?” And you conceded that this must mean he is interested. If this doesn’t suggests a show of some kind, perhaps you will tell us what other purpose you think he had in creating the higgledy-piggledy bush of a billion and one organisms, lifestyles and wonders, including the brain of Homo sapiens, while remaining hidden and watching with interest.

Evolution, survival and adaptation

by David Turell @, Friday, September 29, 2017, 15:05 (2610 days ago) @ dhw

DAVID: I've not changed and neither have you. Balance of nature is absolutely necessary to produce the human brain, exactly to keep solve the issue of 'life goes on' by providing the necessary energy supply.

dhw: And so your all-powerful God could not have provided the necessary energy supply to produce the human brain without preprogramming/dabbling the poisonous moths and frogs, the weaverbird’s nest, the eight stages of whale, the monarch butterfly’s life cycle, plus all the innovations, lifestyles and natural wonders that no longer exist. And this makes sense to you?

DAVID: The brain is the current endpoint of evolution. The possibility of a 'show' is your side issue. I see God full of purpose, not theatrics, which might be a favorite subject of yours as a playwright.

dhw: What purpose? All you offer is H. sapiens’ brain! (You did once mention a desire to communicate with us, but that became a problem with our interlocutor being hidden.) I have suggested purposes for individual organisms and for your God producing the whole bush of evolution AND the human brain. You wrote: “We don’t know if he is watching, but since he is in charge, I’m sure he is. Why create and not watch the outcomes?” And you conceded that this must mean he is interested. If this doesn’t suggests a show of some kind, perhaps you will tell us what other purpose you think he had in creating the higgledy-piggledy bush of a billion and one organisms, lifestyles and wonders, including the brain of Homo sapiens, while remaining hidden and watching with interest.

Your confusion about my theory is that you refuse to recognize that evolution takes time and must be supported during the long periods. There must be a balance of nature to provide energy for life to continue to evolve. God uses evolution in all He does. That is what history tells us. I really don't delve any deeper. I'm satisfied with how all of that fits together. I'm sorry you don't see the connections.

Evolution, survival and adaptation

by dhw, Saturday, September 30, 2017, 13:20 (2609 days ago) @ David Turell

DAVID: I've not changed and neither have you. Balance of nature is absolutely necessary to produce the human brain, exactly to keep solve the issue of 'life goes on' by providing the necessary energy supply.

dhw: And so your all-powerful God could not have provided the necessary energy supply to produce the human brain without preprogramming/dabbling the poisonous moths and frogs, the weaverbird’s nest, the eight stages of whale, the monarch butterfly’s life cycle, plus all the innovations, lifestyles and natural wonders that no longer exist. And this makes sense to you?

DAVID: The brain is the current endpoint of evolution. The possibility of a 'show' is your side issue. I see God full of purpose, not theatrics, which might be a favorite subject of yours as a playwright.

dhw: What purpose? All you offer is H. sapiens’ brain! (You did once mention a desire to communicate with us, but that became a problem with our interlocutor being hidden.) I have suggested purposes for individual organisms and for your God producing the whole bush of evolution AND the human brain. You wrote: “We don’t know if he is watching, but since he is in charge, I’m sure he is. Why create and not watch the outcomes?” And you conceded that this must mean he is interested. If this doesn’t suggests a show of some kind, perhaps you will tell us what other purpose you think he had in creating the higgledy-piggledy bush of a billion and one organisms, lifestyles and wonders, including the brain of Homo sapiens, while remaining hidden and watching with interest.

DAVID: Your confusion about my theory is that you refuse to recognize that evolution takes time and must be supported during the long periods. There must be a balance of nature to provide energy for life to continue to evolve. God uses evolution in all He does. That is what history tells us. I really don't delve any deeper. I'm satisfied with how all of that fits together. I'm sorry you don't see the connections.

I recognize that evolution has been going on for billions of years, and that it couldn’t continue if it couldn’t continue. How does that make the brain of H. sapiens the purpose of the eight stages of whale, the weaverbird’s nest, the monarch’s migration, the frog’s poison, and every other innovation, lifestyle and natural wonder you can think of? The problem is that the deeper we delve, the more disconnected your hypothesis becomes. I notice you are also avoiding the subject of purpose, which you were so keen to push before. But perhaps you are right not to delve. When people are satisfied, perhaps one shouldn’t question their beliefs. And yet Dawkins is another who seems to be satisfied with how it all fits together, but you don’t hesitate to delve.

Evolution, survival and adaptation

by David Turell @, Saturday, September 30, 2017, 15:03 (2609 days ago) @ dhw


dhw: What purpose? All you offer is H. sapiens’ brain! (You did once mention a desire to communicate with us, but that became a problem with our interlocutor being hidden.) I have suggested purposes for individual organisms and for your God producing the whole bush of evolution AND the human brain. You wrote: “We don’t know if he is watching, but since he is in charge, I’m sure he is. Why create and not watch the outcomes?” And you conceded that this must mean he is interested. If this doesn’t suggests a show of some kind, perhaps you will tell us what other purpose you think he had in creating the higgledy-piggledy bush of a billion and one organisms, lifestyles and wonders, including the brain of Homo sapiens, while remaining hidden and watching with interest.

DAVID: Your confusion about my theory is that you refuse to recognize that evolution takes time and must be supported during the long periods. There must be a balance of nature to provide energy for life to continue to evolve. God uses evolution in all He does. That is what history tells us. I really don't delve any deeper. I'm satisfied with how all of that fits together. I'm sorry you don't see the connections.

dhw: I recognize that evolution has been going on for billions of years, and that it couldn’t continue if it couldn’t continue. How does that make the brain of H. sapiens the purpose of the eight stages of whale, the weaverbird’s nest, the monarch’s migration, the frog’s poison, and every other innovation, lifestyle and natural wonder you can think of? The problem is that the deeper we delve, the more disconnected your hypothesis becomes. I notice you are also avoiding the subject of purpose, which you were so keen to push before. But perhaps you are right not to delve. When people are satisfied, perhaps one shouldn’t question their beliefs. And yet Dawkins is another who seems to be satisfied with how it all fits together, but you don’t hesitate to delve.

I haven't avoided the issue of purpose. It is you who seem to avoid it. Humans with their amazing brain is the primary purpose, which you always wish to deny. The other evolutionary developments support complex ecosystems which support evolution. To me it all fits together, so why delve deeper. Where is the deeper?

Evolution, survival and adaptation

by dhw, Sunday, October 01, 2017, 13:38 (2608 days ago) @ David Turell

dhw: What purpose? All you offer is H. sapiens’ brain! (You did once mention a desire to communicate with us, but that became a problem with our interlocutor being hidden.) I have suggested purposes for individual organisms and for your God producing the whole bush of evolution AND the human brain. You wrote: “We don’t know if he is watching, but since he is in charge, I’m sure he is. Why create and not watch the outcomes?” And you conceded that this must mean he is interested. If this doesn’t suggests a show of some kind, perhaps you will tell us what other purpose you think he had in creating the higgledy-piggledy bush of a billion and one organisms, lifestyles and wonders, including the brain of Homo sapiens, while remaining hidden and watching with interest.
[…]
dhw: The problem is that the deeper we delve, the more disconnected your hypothesis becomes. I notice you are also avoiding the subject of purpose, which you were so keen to push before. But perhaps you are right not to delve. When people are satisfied, perhaps one shouldn’t question their beliefs. And yet Dawkins is another who seems to be satisfied with how it all fits together, but you don’t hesitate to delve.

DAVID: I haven't avoided the issue of purpose. It is you who seem to avoid it. Humans with their amazing brain is the primary purpose, which you always wish to deny. The other evolutionary developments support complex ecosystems which support evolution. To me it all fits together, so why delve deeper. Where is the deeper?

I have reproduced the paragraph which I devoted to purpose and to which you have not responded. If your all-powerful God deliberately created all the complex organisms and ecosystems extant and extinct (which would have to include all the environmental changes – one of several issues you vacillate over), and if they were not directly connected to the production of the human brain (even you can’t find a connection between eight stages of whale, the weaverbird’s nest, the frog’s poison etc. and the human brain), then maybe they had another purpose. And maybe that other purpose also applied to the human brain. Or don’t you think he must have had a purpose in producing the human brain? That is what I call delving deeper. Until you can explain how your God’s personal design or preprogramming of the weaverbird’s nest “fits together” with the production of the human brain, there can be no “fitting together” of your prime purpose and the history of evolution.

Evolution, survival and adaptation

by David Turell @, Sunday, October 01, 2017, 14:37 (2608 days ago) @ dhw

dhw: What purpose? All you offer is H. sapiens’ brain! (You did once mention a desire to communicate with us, but that became a problem with our interlocutor being hidden.) I have suggested purposes for individual organisms and for your God producing the whole bush of evolution AND the human brain. You wrote: “We don’t know if he is watching, but since he is in charge, I’m sure he is. Why create and not watch the outcomes?” And you conceded that this must mean he is interested. If this doesn’t suggests a show of some kind, perhaps you will tell us what other purpose you think he had in creating the higgledy-piggledy bush of a billion and one organisms, lifestyles and wonders, including the brain of Homo sapiens, while remaining hidden and watching with interest.
[…]
dhw: The problem is that the deeper we delve, the more disconnected your hypothesis becomes. I notice you are also avoiding the subject of purpose, which you were so keen to push before. But perhaps you are right not to delve. When people are satisfied, perhaps one shouldn’t question their beliefs. And yet Dawkins is another who seems to be satisfied with how it all fits together, but you don’t hesitate to delve.

DAVID: I haven't avoided the issue of purpose. It is you who seem to avoid it. Humans with their amazing brain is the primary purpose, which you always wish to deny. The other evolutionary developments support complex ecosystems which support evolution. To me it all fits together, so why delve deeper. Where is the deeper?

dhw: I have reproduced the paragraph which I devoted to purpose and to which you have not responded. If your all-powerful God deliberately created all the complex organisms and ecosystems extant and extinct (which would have to include all the environmental changes – one of several issues you vacillate over), and if they were not directly connected to the production of the human brain (even you can’t find a connection between eight stages of whale, the weaverbird’s nest, the frog’s poison etc. and the human brain), then maybe they had another purpose. And maybe that other purpose also applied to the human brain. Or don’t you think he must have had a purpose in producing the human brain? That is what I call delving deeper. Until you can explain how your God’s personal design or preprogramming of the weaverbird’s nest “fits together” with the production of the human brain, there can be no “fitting together” of your prime purpose and the history of evolution.

My not delving into your thought processes of God's purposes is I find many of your questions unanswerable as I have stated. We can only understand God through what He has produced. His motives, from our standpoint are only educated guesses. You have yours, influenced from your non-belief, I have mine. Mine look consistent to me. Yours make me think, but if I have no answer to your questions, it is generally because I don't see how to reach one I can believe. As for watching, since God created form and function, I'm sure He watches to see how His creations are working out their lives at a functional level. Does He judge human choices and moral behavior? Doubtful. As for fitting in whales, weaverbirds, etc., I'll stick with ecosystems for food supply.

Evolution, survival and adaptation

by dhw, Monday, October 02, 2017, 13:39 (2607 days ago) @ David Turell

dhw: […] Until you can explain how your God’s personal design or preprogramming of the weaverbird’s nest “fits together” with the production of the human brain, there can be no “fitting together” of your prime purpose and the history of evolution.

DAVID: My not delving into your thought processes of God's purposes is I find many of your questions unanswerable as I have stated. We can only understand God through what He has produced. His motives, from our standpoint are only educated guesses. You have yours, influenced from your non-belief, I have mine. Mine look consistent to me. Yours make me think, but if I have no answer to your questions, it is generally because I don't see how to reach one I can believe. As for watching, since God created form and function, I'm sure He watches to see how His creations are working out their lives at a functional level. Does He judge human choices and moral behavior? Doubtful. As for fitting in whales, weaverbirds, etc., I'll stick with ecosystems for food supply.

As always, I appreciate your honesty in admitting that your hypothesis raises questions you cannot answer. That is why I keep asking you to consider other hypotheses. If God exists, we can indeed only try to understand him through what he has produced, and what he has produced does not fit in with your hypothesis. I shan’t repeat the long list of anomalies, since you acknowledge them as questions you can’t answer. My own theistic hypothesis is not “influenced by my non-belief” (when I put on my theist’s hat, I don’t suddenly become an atheist!) – it is influenced by my attempt to find a coherent explanation for evolution’s history. I agree that humans are especially self-aware and intelligent, and so they may have been an afterthought, or the result of experimentation or a dabble, but that does not make them the “prime” purpose, which needs to explain the weaverbird’s nest as well as the human brain. The motive I suggest is the spectacle (which even you think he must be watching), and the method is a free-for-all, so we needn’t wonder why he specially created the whale and the weaverbird's nest and the frog's poison. The simple answer is that he didn’t. He only created the means whereby they (their intelligent cell communities) did their own creating. Just a hypothesis, but which of your “unanswerable” questions does it fail to answer?

Evolution, survival and adaptation

by David Turell @, Monday, October 02, 2017, 15:32 (2607 days ago) @ dhw

dhw: […] Until you can explain how your God’s personal design or preprogramming of the weaverbird’s nest “fits together” with the production of the human brain, there can be no “fitting together” of your prime purpose and the history of evolution.

DAVID: My not delving into your thought processes of God's purposes is I find many of your questions unanswerable as I have stated. We can only understand God through what He has produced. His motives, from our standpoint are only educated guesses. You have yours, influenced from your non-belief, I have mine. Mine look consistent to me. Yours make me think, but if I have no answer to your questions, it is generally because I don't see how to reach one I can believe. As for watching, since God created form and function, I'm sure He watches to see how His creations are working out their lives at a functional level. Does He judge human choices and moral behavior? Doubtful. As for fitting in whales, weaverbirds, etc., I'll stick with ecosystems for food supply.

dhw: As always, I appreciate your honesty in admitting that your hypothesis raises questions you cannot answer. That is why I keep asking you to consider other hypotheses. If God exists, we can indeed only try to understand him through what he has produced, and what he has produced does not fit in with your hypothesis. I shan’t repeat the long list of anomalies, since you acknowledge them as questions you can’t answer. My own theistic hypothesis is not “influenced by my non-belief” (when I put on my theist’s hat, I don’t suddenly become an atheist!) – it is influenced by my attempt to find a coherent explanation for evolution’s history. I agree that humans are especially self-aware and intelligent, and so they may have been an afterthought, or the result of experimentation or a dabble, but that does not make them the “prime” purpose, which needs to explain the weaverbird’s nest as well as the human brain. The motive I suggest is the spectacle (which even you think he must be watching), and the method is a free-for-all, so we needn’t wonder why he specially created the whale and the weaverbird's nest and the frog's poison. The simple answer is that he didn’t. He only created the means whereby they (their intelligent cell communities) did their own creating. Just a hypothesis, but which of your “unanswerable” questions does it fail to answer?'

Don't you realize your paragraph is supposition piled on supposition to explain in your mind what is miraculous material. Why is there any life? Why did the human brain appear? If you look at it from a sense of wonder and appreciation purpose can appear. If you then say to yourself it all requires planning, that planning must come from a miraculous mind. It is all very logical to me. I see the coherence you can't find.

Evolution, survival and adaptation

by dhw, Tuesday, October 03, 2017, 13:31 (2606 days ago) @ David Turell

DAVID: Don't you realize your paragraph is supposition piled on supposition to explain in your mind what is miraculous material. Why is there any life? Why did the human brain appear? If you look at it from a sense of wonder and appreciation purpose can appear. If you then say to yourself it all requires planning, that planning must come from a miraculous mind. It is all very logical to me. I see the coherence you can't find.

You keep talking of purpose, but you admit that you can’t answer my questions about how your own speculations concerning purpose fit in with the history of life, and you refuse to consider a hypothesis (not a supposition but a suggestion) which answers those questions. The sense of wonder and appreciation applies every bit as much to my hypothesis as it does to yours, so here are the suggestions in their theistic form. Why is there life? Because God wanted to create life. Why did God want to create life? Because he wanted to create a spectacle that he could watch. How did he do it? He created an autonomous mechanism which enabled living cells to change themselves into all kinds of wonderful creatures, including humans. How much of this was planned? The design of the autonomous intelligent cell was entirely his, and his plan was to create a system of changing environments which provided both challenges and opportunities for his autonomous cell communities to adapt to or exploit, so that there would be an ever changing variety of life. But he also left himself the option to dabble if he felt like it. For some people, the human brain is so unique that it must have been the result of a dabble. Some people may think that Chixculub was another dabble. But the variety of organisms, lifestyles and natural wonders extant and extinct is the result of autonomous intelligences, exploiting or not exploiting, coping or not coping with environmental changes. We do not have to ask unanswerable questions such as why God planned the whale and the weaverbird’s nest (he didn’t), why he adopted such a roundabout way of producing the brain of Homo sapiens (he didn’t, though he may have dabbled), whether he did or did not control every single environmental change, whether his powers are limited, why he remains hidden if he wants contact with humans etc., because they are all covered by a simple proposal: what we see is what he wanted – namely an ever changing spectacle. That provides both purpose and, in our case and perhaps also in his, a sense of wonder and appreciation. So once again, please tell us which of your “unanswerable questions” this hypothesis fails to answer.

Evolution, survival and adaptation

by David Turell @, Tuesday, October 03, 2017, 14:22 (2606 days ago) @ dhw

DAVID: Don't you realize your paragraph is supposition piled on supposition to explain in your mind what is miraculous material. Why is there any life? Why did the human brain appear? If you look at it from a sense of wonder and appreciation purpose can appear. If you then say to yourself it all requires planning, that planning must come from a miraculous mind. It is all very logical to me. I see the coherence you can't find.

dhw: You keep talking of purpose, but you admit that you can’t answer my questions about how your own speculations concerning purpose fit in with the history of life, and you refuse to consider a hypothesis (not a supposition but a suggestion) which answers those questions. The sense of wonder and appreciation applies every bit as much to my hypothesis as it does to yours, so here are the suggestions in their theistic form. Why is there life? Because God wanted to create life. Why did God want to create life? Because he wanted to create a spectacle that he could watch. How did he do it? He created an autonomous mechanism which enabled living cells to change themselves into all kinds of wonderful creatures, including humans. How much of this was planned? The design of the autonomous intelligent cell was entirely his, and his plan was to create a system of changing environments which provided both challenges and opportunities for his autonomous cell communities to adapt to or exploit, so that there would be an ever changing variety of life. But he also left himself the option to dabble if he felt like it. For some people, the human brain is so unique that it must have been the result of a dabble. Some people may think that Chixculub was another dabble. But the variety of organisms, lifestyles and natural wonders extant and extinct is the result of autonomous intelligences, exploiting or not exploiting, coping or not coping with environmental changes. We do not have to ask unanswerable questions such as why God planned the whale and the weaverbird’s nest (he didn’t), why he adopted such a roundabout way of producing the brain of Homo sapiens (he didn’t, though he may have dabbled), whether he did or did not control every single environmental change, whether his powers are limited, why he remains hidden if he wants contact with humans etc., because they are all covered by a simple proposal: what we see is what he wanted – namely an ever changing spectacle. That provides both purpose and, in our case and perhaps also in his, a sense of wonder and appreciation. So once again, please tell us which of your “unanswerable questions” this hypothesis fails to answer.

You have created an inventive scenario that fits the facts, no question. But it defines a different motive for God than those who believe in Him would ever want to accept. Since it fits, it is a possible interpretation, but that is not proof. My proof to myself gets into the issue of design complexity, which I constantly present here and you admit its importance and then appear to gloss it over in your theories. The complexity requires design by a planning mind is my constant point. I'll stick with it.

Evolution, survival and adaptation

by dhw, Wednesday, October 04, 2017, 14:12 (2605 days ago) @ David Turell

DAVID: You have created an inventive scenario that fits the facts, no question. But it defines a different motive for God than those who believe in Him would ever want to accept. Since it fits, it is a possible interpretation, but that is not proof. My proof to myself gets into the issue of design complexity, which I constantly present here and you admit its importance and then appear to gloss it over in your theories. The complexity requires design by a planning mind is my constant point. I'll stick with it.

Thank you for your first sentence. You have always rejected organized religion and identified your beliefs with panentheism, which most religious people have probably never heard of, so I would suggest that even for you, it’s more important to find explanations that fit the facts than to follow what other believers accept. In any case my hypothesis is very much in line with Deism, which proposes that God lets his creation pursue its own course. Neither your hypothesis nor mine is proven. If it were, there would be no discussion. I have never glossed over the issue of complexity, which is why my hypothesis leaves room for God. The issue is whether your God created a mechanism that was capable of creating the complexities that have given rise to the history of life on Earth. The answer is we don’t know. Your answer appears to be that although it fits the facts, unlike your own hypothesis, it doesn’t fit your interpretation of how God’s mind works.

Evolution, survival and adaptation

by David Turell @, Wednesday, October 04, 2017, 19:04 (2605 days ago) @ dhw

DAVID: You have created an inventive scenario that fits the facts, no question. But it defines a different motive for God than those who believe in Him would ever want to accept. Since it fits, it is a possible interpretation, but that is not proof. My proof to myself gets into the issue of design complexity, which I constantly present here and you admit its importance and then appear to gloss it over in your theories. The complexity requires design by a planning mind is my constant point. I'll stick with it.

dhw: Thank you for your first sentence. You have always rejected organized religion and identified your beliefs with panentheism, which most religious people have probably never heard of, so I would suggest that even for you, it’s more important to find explanations that fit the facts than to follow what other believers accept. In any case my hypothesis is very much in line with Deism, which proposes that God lets his creation pursue its own course. Neither your hypothesis nor mine is proven. If it were, there would be no discussion. I have never glossed over the issue of complexity, which is why my hypothesis leaves room for God. The issue is whether your God created a mechanism that was capable of creating the complexities that have given rise to the history of life on Earth. The answer is we don’t know. Your answer appears to be that although it fits the facts, unlike your own hypothesis, it doesn’t fit your interpretation of how God’s mind works.

Your summary certainly defines our differences.

Evolution, survival and adaptation

by dhw, Thursday, October 05, 2017, 13:30 (2604 days ago) @ David Turell

DAVID: You have created an inventive scenario that fits the facts, no question. But it defines a different motive for God than those who believe in Him would ever want to accept. Since it fits, it is a possible interpretation, but that is not proof. My proof to myself gets into the issue of design complexity, which I constantly present here and you admit its importance and then appear to gloss it over in your theories. The complexity requires design by a planning mind is my constant point. I'll stick with it.

dhw: Thank you for your first sentence. You have always rejected organized religion and identified your beliefs with panentheism, which most religious people have probably never heard of, so I would suggest that even for you, it’s more important to find explanations that fit the facts than to follow what other believers accept. In any case my hypothesis is very much in line with Deism, which proposes that God lets his creation pursue its own course. Neither your hypothesis nor mine is proven. If it were, there would be no discussion. I have never glossed over the issue of complexity, which is why my hypothesis leaves room for God. The issue is whether your God created a mechanism that was capable of creating the complexities that have given rise to the history of life on Earth. The answer is we don’t know. Your answer appears to be that although it fits the facts, unlike your own hypothesis, it doesn’t fit your interpretation of how God’s mind works.

DAVID: Your summary certainly defines our differences.

The basic difference being that my hypothesis, unlike your own, fits the facts but not your interpretation of how your God’s mind works. I’ll settle for that.

Evolution, survival and adaptation; fast fish

by David Turell @, Wednesday, August 08, 2018, 15:50 (2297 days ago) @ dhw

Reproduction from birth to performance in 14 days. Amazing adaptation:

https://cosmosmagazine.com/biology/fish-goes-from-egg-to-maturity-in-just-14-days

"The turquoise killifish (Nothobranchius furzeri) from Africa can reach sexual maturity in just 14 days, making it the fastest maturing vertebrate on record.

"The species has a stop-start life history strategy suited to life in the ephemeral pools and puddles of the savannahs of Africa. Tiny embryos in a state of inactivity known as diapause survive in dry sediments, and spring to life when rain falls. A short life cycle of rapid maturation and breeding ensues before the puddles dry.

***

"The killifish life-cycle has been studied extensively in laboratory conditions, and the maturation period has ranged from 18 days to as long as 10 weeks. Reichard and his team decided to observe the fish in its natural habitat, southern Mozambique.

"The team collected fish from eight separate pools between January and May 2016, within three weeks of the pools first finning with rainwater. They used a combination of otolith (ear bone) ageing and careful examination of gonads of both sexes.

"The findings, published in the journal Current Biology, reveal that Nothobranchius furzeri is capable of reaching sexual maturity just 14 days after hatching, the fastest rate of sexual maturation recorded for any vertebrate.

"In the lab, killifish which reach sexual maturity in a short time span such as 18 days deteriorate rapidly after breeding and only live for only four to six months. The species pays the price of rapid maturity with a shorter lifespan. In the wild, the strategy means that even a pool that dried out after three weeks was able to support one entire life cycle.

"This type of life history strategy, with an embryo sealed in a protective case, is more commonly seen in invertebrates such as sand shrimp and other small animals.

“'The killifish combines a vertebrate body plan with a characteristically invertebrate solution to survival in unpredictable conditions,” adds Reichard."

Comment: If water is so brief in its appearance, how did this have time to evolve in the expected Darwin stages of several intermediate steps? Perhaps the fish was designed this way.

Evolution, survival and adaptation; fast fish

by dhw, Thursday, August 09, 2018, 10:31 (2297 days ago) @ David Turell

QUOTE: “'The killifish combines a vertebrate body plan with a characteristically invertebrate solution to survival in unpredictable conditions,” adds Reichard."

David’s comment: If water is so brief in its appearance, how did this have time to evolve in the expected Darwin stages of several intermediate steps? Perhaps the fish was designed this way.

A fascinating example of how cell communities can adapt to all kinds of environments. Slightly spoilt by the unnecessary reference to Darwin’s gradualism, which you and I have long since rejected. If you want to go on flogging dead horses, then what is your theory? That your God preprogrammed the killifish 3.8 billion years ago or leapt in to specially design it, as he apparently did with the weaverbird’s nest, because it was essential to the balance of nature so that life could continue until he was able to design the brain of Homo sapiens?

Evolution, survival and adaptation; fast fish

by David Turell @, Thursday, August 09, 2018, 18:58 (2296 days ago) @ dhw

QUOTE: “'The killifish combines a vertebrate body plan with a characteristically invertebrate solution to survival in unpredictable conditions,” adds Reichard."

David’s comment: If water is so brief in its appearance, how did this have time to evolve in the expected Darwin stages of several intermediate steps? Perhaps the fish was designed this way.

dhw: A fascinating example of how cell communities can adapt to all kinds of environments. Slightly spoilt by the unnecessary reference to Darwin’s gradualism, which you and I have long since rejected. If you want to go on flogging dead horses, then what is your theory? That your God preprogrammed the killifish 3.8 billion years ago or leapt in to specially design it, as he apparently did with the weaverbird’s nest, because it was essential to the balance of nature so that life could continue until he was able to design the brain of Homo sapiens?

I said design was a distinct possibility

Evolution, survival and adaptation; fast fish

by Balance_Maintained @, U.S.A., Friday, August 10, 2018, 13:31 (2295 days ago) @ David Turell

QUOTE: “'The killifish combines a vertebrate body plan with a characteristically invertebrate solution to survival in unpredictable conditions,” adds Reichard."

David’s comment: If water is so brief in its appearance, how did this have time to evolve in the expected Darwin stages of several intermediate steps? Perhaps the fish was designed this way.

dhw: A fascinating example of how cell communities can adapt to all kinds of environments. Slightly spoilt by the unnecessary reference to Darwin’s gradualism, which you and I have long since rejected. If you want to go on flogging dead horses, then what is your theory? That your God preprogrammed the killifish 3.8 billion years ago or leapt in to specially design it, as he apparently did with the weaverbird’s nest, because it was essential to the balance of nature so that life could continue until he was able to design the brain of Homo sapiens?


David: I said design was a distinct possibility

Oh, the snark is strong with you. From a biblical perspective, each stage of create was followed with "and God saw that it was good"(lit. Functional). Reading through the order of operations, which match our scientific observations, each stage had to be functionally complete and working, prior to moving on to the next. In other words, the damn weaver birds were working as they needed to work long, long before humans came on the scene. Humans were created, at least according to the account, as care takers. In other words, the weaver birds were not created for us, we were created for them, and all other creatures.

The Bibles version of a ruler is that of a servant. The King is the servant of their subjects as much as he is a ruler. For once, I would absolutely love to see how data is interpreted without the human-centric arrogance. Everything was not created for us. It was created for as a gift for Jesus, and we were created as caretakers of that gift, and because of that, Jesus was 'especially fond of us.

The point is, if you are going to make the attempt at looking at the universe through the lens of creation, exploring that possibility, have the decency to give it as much thought and attention as you do other possible explanations, considering the source material as well as the science. Otherwise, you're just giving lip service to it without making any real attempt to understand that perspective.

Over the years, I have watched as creation was discussed, but all sources of the creation narrative were summarily dismissed without consideration, yet dozens of philosophers of science were read and studied in depth, and their studies given great weight. I personally feel that, regardless of whether you believe the Bible or not, if you are going to consider a view, intellectual integrity requires us to consider the ENTIRE view, not just the parts of it we choose.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution, survival and adaptation; fast fish

by David Turell @, Friday, August 10, 2018, 14:53 (2295 days ago) @ Balance_Maintained

QUOTE: “'The killifish combines a vertebrate body plan with a characteristically invertebrate solution to survival in unpredictable conditions,” adds Reichard."

David’s comment: If water is so brief in its appearance, how did this have time to evolve in the expected Darwin stages of several intermediate steps? Perhaps the fish was designed this way.

dhw: A fascinating example of how cell communities can adapt to all kinds of environments. Slightly spoilt by the unnecessary reference to Darwin’s gradualism, which you and I have long since rejected. If you want to go on flogging dead horses, then what is your theory? That your God preprogrammed the killifish 3.8 billion years ago or leapt in to specially design it, as he apparently did with the weaverbird’s nest, because it was essential to the balance of nature so that life could continue until he was able to design the brain of Homo sapiens?


David: I said design was a distinct possibility


Tony: Oh, the snark is strong with you. From a biblical perspective, each stage of create was followed with "and God saw that it was good"(lit. Functional). Reading through the order of operations, which match our scientific observations, each stage had to be functionally complete and working, prior to moving on to the next. In other words, the damn weaver birds were working as they needed to work long, long before humans came on the scene. Humans were created, at least according to the account, as care takers. In other words, the weaver birds were not created for us, we were created for them, and all other creatures.

The Bibles version of a ruler is that of a servant. The King is the servant of their subjects as much as he is a ruler. For once, I would absolutely love to see how data is interpreted without the human-centric arrogance. Everything was not created for us. It was created for as a gift for Jesus, and we were created as caretakers of that gift, and because of that, Jesus was 'especially fond of us.

The point is, if you are going to make the attempt at looking at the universe through the lens of creation, exploring that possibility, have the decency to give it as much thought and attention as you do other possible explanations, considering the source material as well as the science. Otherwise, you're just giving lip service to it without making any real attempt to understand that perspective.

Over the years, I have watched as creation was discussed, but all sources of the creation narrative were summarily dismissed without consideration, yet dozens of philosophers of science were read and studied in depth, and their studies given great weight. I personally feel that, regardless of whether you believe the Bible or not, if you are going to consider a view, intellectual integrity requires us to consider the ENTIRE view, not just the parts of it we choose.

Biblically correct and supports my design theory.

Evolution, monarch adaptation to toxic milkweed

by David Turell @, Thursday, October 03, 2019, 20:33 (1876 days ago) @ David Turell

A poisonous plant is the only food for their caterpillars. It took three different mutations to do it:

https://www.scientificamerican.com/article/how-monarch-butterflies-evolved-to-eat-a-poi...

"The monarch butterfly’s colorful caterpillars, for example, devour milkweed with gusto—in fact, it is the only thing they ever eat. They can tolerate this food source because of a peculiarity in a crucial protein in their bodies, a sodium pump, that the cardenolide toxins usually interfere with.

"All animals have this pump. It’s essential for physiological recovery after heart muscle cells contract or nerve cells fire—events that are triggered when sodium floods into the cells, causing an electrical discharge. After the firing and contracting is done, the cells must clean up, and so they turn on their sodium pumps and expel the sodium. This restores the electrical balance and resets the cell to its usual state, ready again for action.

"Cardenolides are noxious because they bind to key parts of these pumps and prevent them from doing their job. This makes animal hearts beat stronger and stronger, often ending in cardiac arrest.

***

“'They needed to get the mutations in the right order,” Whiteman says. First, a mutation of small effect would have altered the structure of the sodium pump to provide some resistance, but also some neurological problems. The second mutation would have amended the pump structure slightly, thereby fixing that problem. By so doing, it would have prepared conditions for the third mutation—the one with the heftiest antitoxin effect. By itself, that third mutation would have created intolerable neurological issues. But with the second mutation already in place, all would be well, or at least much better.

“'Biologists call this a constrained adaptive walk,” says Whiteman, “where one mutation is followed by another, in a predictable order, setting a species, or more than one, on a trajectory to higher fitness.” (my bold)

***

"The monarchs’ evolutionary innovation had an ecological ripple effect. Not only did resistance to the toxin open up a whole new source of food, but it also allowed the butterflies to repel predators by storing the toxins in their bodies."

Comment: three specific mutations are needed, and note my bold, must appear in specific order to evolve. Not by chance; only a designer can do this. And for survival all three mutations had to be present for the caterpillars to survive. And if the taste is very noxious to most insects, it must taste good for these guys, which means more mutations must be present or the three mutations also make it taste good.

Evolution, monarch adaptation to toxic milkweed

by dhw, Friday, October 04, 2019, 09:59 (1876 days ago) @ David Turell

QUOTES: They needed to get the mutations in the right order,” Whiteman says. First, a mutation of small effect would have altered the structure of the sodium pump to provide some resistance, but also some neurological problems. The second mutation would have amended the pump structure slightly, thereby fixing that problem. By so doing, it would have prepared conditions for the third mutation—the one with the heftiest antitoxin effect. By itself, that third mutation would have created intolerable neurological issues. But with the second mutation already in place, all would be well, or at least much better.

“'Biologists call this a constrained adaptive walk,” says Whiteman, “where one mutation is followed by another, in a predictable order, setting a species, or more than one, on a trajectory to higher fitness.” (DAVID’s bold)

DAVID: three specific mutations are needed, and note my bold, must appear in specific order to evolve. Not by chance; only a designer can do this. And for survival all three mutations had to be present for the caterpillars to survive. And if the taste is very noxious to most insects, it must taste good for these guys, which means more mutations must be present or the three mutations also make it taste good.

I agree with you that these mutations could not have been by chance. But I don’t understand why a designer whose only purpose was to design H. sapiens would, 3.8 billion years ago, have provided the first cells with a programme for these three mutations in the monarch butterfly. Clearly the cell communities of the monarch’s immediate ancestor are what changed (mutated), and so an alternative to divine programming and/or dabbling might have been the intelligence (possibly God-given) of the cells themselves enabling them to find new ways to survive.

Evolution, monarch adaptation to toxic milkweed

by David Turell @, Friday, October 04, 2019, 18:11 (1875 days ago) @ dhw

QUOTES: They needed to get the mutations in the right order,” Whiteman says. First, a mutation of small effect would have altered the structure of the sodium pump to provide some resistance, but also some neurological problems. The second mutation would have amended the pump structure slightly, thereby fixing that problem. By so doing, it would have prepared conditions for the third mutation—the one with the heftiest antitoxin effect. By itself, that third mutation would have created intolerable neurological issues. But with the second mutation already in place, all would be well, or at least much better.

“'Biologists call this a constrained adaptive walk,” says Whiteman, “where one mutation is followed by another, in a predictable order, setting a species, or more than one, on a trajectory to higher fitness.” (DAVID’s bold)

DAVID: three specific mutations are needed, and note my bold, must appear in specific order to evolve. Not by chance; only a designer can do this. And for survival all three mutations had to be present for the caterpillars to survive. And if the taste is very noxious to most insects, it must taste good for these guys, which means more mutations must be present or the three mutations also make it taste good.

dhw: I agree with you that these mutations could not have been by chance. But I don’t understand why a designer whose only purpose was to design H. sapiens would, 3.8 billion years ago, have provided the first cells with a programme for these three mutations in the monarch butterfly. Clearly the cell communities of the monarch’s immediate ancestor are what changed (mutated), and so an alternative to divine programming and/or dabbling might have been the intelligence (possibly God-given) of the cells themselves enabling them to find new ways to survive.

That is your theory, not mine. The monarchs are necessary part of their econiche and therefore part of God's design.

Evolution, monarch adaptation to toxic milkweed

by dhw, Saturday, October 05, 2019, 11:17 (1874 days ago) @ David Turell

DAVID: three specific mutations are needed, and note my bold, must appear in specific order to evolve. Not by chance; only a designer can do this. And for survival all three mutations had to be present for the caterpillars to survive. And if the taste is very noxious to most insects, it must taste good for these guys, which means more mutations must be present or the three mutations also make it taste good.

dhw: I agree with you that these mutations could not have been by chance. But I don’t understand why a designer whose only purpose was to design H. sapiens would, 3.8 billion years ago, have provided the first cells with a programme for these three mutations in the monarch butterfly. Clearly the cell communities of the monarch’s immediate ancestor are what changed (mutated), and so an alternative to divine programming and/or dabbling might have been the intelligence (possibly God-given) of the cells themselves enabling them to find new ways to survive.

DAVID: That is your theory, not mine. The monarchs are necessary part of their econiche and therefore part of God's design.

Yes, the alternative is my suggested explanation, and yes, all organisms could be called a “necessary part of their econiche” until they become extinct and the econiche changes. You seem to have forgotten the theory which I find so illogical, so let me remind you yet again: “He knew these designs were required interim goals to establish the necessary food supply to cover the time he knew he had decided to take”, i.e. 3.X billion years NOT fulfilling his actual goal, which was to specially design piece after piece of hominin and homo until he finally specially designed H. sapiens – and you have “no idea” why he would have chosen such a method to achieve such a goal, but it’s quite logical provided we humans don’t try to figure out its logic. (See also "David’s theory of evolution”)

Evolution, monarch adaptation to toxic milkweed

by David Turell @, Saturday, October 05, 2019, 18:27 (1874 days ago) @ dhw

DAVID: three specific mutations are needed, and note my bold, must appear in specific order to evolve. Not by chance; only a designer can do this. And for survival all three mutations had to be present for the caterpillars to survive. And if the taste is very noxious to most insects, it must taste good for these guys, which means more mutations must be present or the three mutations also make it taste good.

dhw: I agree with you that these mutations could not have been by chance. But I don’t understand why a designer whose only purpose was to design H. sapiens would, 3.8 billion years ago, have provided the first cells with a programme for these three mutations in the monarch butterfly. Clearly the cell communities of the monarch’s immediate ancestor are what changed (mutated), and so an alternative to divine programming and/or dabbling might have been the intelligence (possibly God-given) of the cells themselves enabling them to find new ways to survive.

DAVID: That is your theory, not mine. The monarchs are necessary part of their econiche and therefore part of God's design.

dhw: Yes, the alternative is my suggested explanation, and yes, all organisms could be called a “necessary part of their econiche” until they become extinct and the econiche changes. You seem to have forgotten the theory which I find so illogical, so let me remind you yet again: “He knew these designs were required interim goals to establish the necessary food supply to cover the time he knew he had decided to take”, i.e. 3.X billion years NOT fulfilling his actual goal, which was to specially design piece after piece of hominin and homo until he finally specially designed H. sapiens – and you have “no idea” why he would have chosen such a method to achieve such a goal, but it’s quite logical provided we humans don’t try to figure out its logic. (See also "David’s theory of evolution”)

You've simply repeated your illogical distortions, implying God should have been humanly impatient and gotten right to His goal of producing humans. Instead it is obvious to me God, in charge, chose to evolve us over time and had to design the bush of life to arrange for the energy needed for the time period involved, 3.8 billion years. Note the bush is also the result of evolving life from bacteria to humans. His choice of methodology is obvious, and yes, we do not know His reasons, nor can we. You like to guess and complain about Him, when it is clearly what He has done.

Evolution: frog adaptation

by David Turell @, Thursday, September 14, 2017, 19:06 (2625 days ago) @ dhw

As frogs appeared and dispersed around the world there was a slow and steady adaptation to new environments, not rapid change:

https://www.sciencedaily.com/releases/2017/09/170913193106.htm

"Evolutionary biologists long have supposed that when species colonize new geographic regions they often develop new traits and adaptations to deal with their fresh surroundings. They branch from their ancestors and multiply in numbers of species.

***

"New research from the University of Kansas appearing in Royal Society Biology Letters shows, in contrast to expectations, "the rapid global range expansion of true frogs was not associated with increased net-diversification."

"First, we had to identify where these true frogs came from and when they started their dispersal all over the world," said lead author Chan Kin Onn, a doctoral student at KU's Biodiversity Institute. "We found a distinct pattern. The origin of these frogs was Indochina -- on the map today, it's most of mainland Asia, including Thailand, Vietnam, Cambodia and Burma. True frogs dispersed throughout every continent except Antarctica from there. That's not a new idea. But we found that a lot of this dispersal happened during a short period of time -- it was during the late Eocene, about 40 million years ago. That hadn't really been identified, until now."

"Next, Chan and co-author Rafe Brown, curator-in-charge of the KU Biodiversity Institute's Herpetology Division, looked to see if this rapid dispersal of true frogs worldwide triggered a matching eruption of speciation.

"'That was our expectation," Chan said. "We thought they'd take off into all this new habitat and resources, with no competition -- and boom, you'd have a lot of new species. But we found the exact opposite was true. In most of the groups, nothing happened. There was no increase in speciation. In one of the groups, diversification significantly slowed down. That was the reverse of what was expected."

***

"'Using data from paleontological studies, we can loosely place a fossil where in the phylogeny it belongs and can put a time stamp on that point," Chan said. "That's where calibration happens, each fossil is sort of like an anchor point. You can imagine with a really big phylogeny, the more anchor points or calibration points the better your time estimate."

"Through this process, the KU researchers concluded true frogs didn't become one of the most biodiverse frog families due to dispersing into new ranges, or due to filling a gap created by a catastrophic die-off (such as the Eocene-Oligocene Extinction Event that triggered widespread extinctions from marine invertebrates to mammals in Asia and Europe).
Rather, the rich diversity of species in the Ranidae family comes from millions of years' worth of continual evolution influenced by a host of different environs.

"'Our conclusion is kind of anticlimactic, but it's cool because it goes against expectations," Chan said. "We show the reason for species richness was just a really steady accumulation of species through time -- there wasn't a big event that caused this family to diversify like crazy.'"

Comment: This contrasts with other rapid evolutionary events like the Cambrian explosion or the sudden bush of hominins. Either evolution is not a consistent progressive mechanism at all times or there is a monkey in the works, God, who picks and chooses when advances happen.

Evolution: frog adaptation

by dhw, Friday, September 15, 2017, 13:37 (2624 days ago) @ David Turell

DAVID's comment: This contrasts with other rapid evolutionary events like the Cambrian explosion or the sudden bush of hominins. Either evolution is not a consistent progressive mechanism at all times or there is a monkey in the works, God, who picks and chooses when advances happen.

Could it not be that different local environments require minor changes (finches’ beaks, froggy fiddles) or major changes (when whales switch from land to water), whereas major widespread environmental changes (the Cambrian) spark major innovations?

Evolution: frog adaptation

by David Turell @, Friday, September 15, 2017, 15:07 (2624 days ago) @ dhw

DAVID's comment: This contrasts with other rapid evolutionary events like the Cambrian explosion or the sudden bush of hominins. Either evolution is not a consistent progressive mechanism at all times or there is a monkey in the works, God, who picks and chooses when advances happen.

dhw: Could it not be that different local environments require minor changes (finches’ beaks, froggy fiddles) or major changes (when whales switch from land to water), whereas major widespread environmental changes (the Cambrian) spark major innovations?

You and I will always differ on where the spark comes from. The increase in oxygen provided the energy for the complex animals of the Cambrian to appear. It did not require their appearance. As for the hominin bush, as savannah appeared only the pre-homos bothered to come down from the trees, but 23 million years ago monkey lumbar spines were showing preparatory changes while still in the trees. It seems to me only God can provides the push to advance.

Evolution: frog adaptation

by dhw, Saturday, September 16, 2017, 12:58 (2623 days ago) @ David Turell

dhw: Could it not be that different local environments require minor changes (finches’ beaks, froggy fiddles) or major changes (when whales switch from land to water), whereas major widespread environmental changes (the Cambrian) spark major innovations?

DAVID: You and I will always differ on where the spark comes from. The increase in oxygen provided the energy for the complex animals of the Cambrian to appear. It did not require their appearance.

As we have agreed a thousand times, no appearance was “required” beyond that of bacteria. That is why I go beyond survival to improvement. New conditions present new opportunities, and these were provided by the increase in oxygen.

DAVID: As for the hominin bush, as savannah appeared only the pre-homos bothered to come down from the trees, but 23 million years ago monkey lumbar spines were showing preparatory changes while still in the trees. It seems to me only God can provide the push to advance.

As I keep pointing out, evolution takes place in individual organisms. The emergence of one species from another does not mean the preceding species dies out. Pre-homos diverged from their ape ancestors, who stayed in the trees. That is the process of common descent we both believe in. We have no idea what lumbar-changing monkeys were up to 23 million years ago. Maybe they spent 50% of their time in the trees and 50% on the ground. Most of the changes you focus on are saltations (only God can do them), but now we have preparatory work, which clearly indicates a gradual process (and only God can do that too). If your God’s prime purpose was to produce Homo sapiens and his brain, do you really think he was incapable of doing it without millions of years of “preparatory” work?

Evolution: frog adaptation

by David Turell @, Saturday, September 16, 2017, 14:59 (2623 days ago) @ dhw


DAVID: You and I will always differ on where the spark comes from. The increase in oxygen provided the energy for the complex animals of the Cambrian to appear. It did not require their appearance.

dhw: As we have agreed a thousand times, no appearance was “required” beyond that of bacteria. That is why I go beyond survival to improvement. New conditions present new opportunities, and these were provided by the increase in oxygen.

But as the frogs show, new opportunities does not mean they are always taken.


DAVID: As for the hominin bush, as savannah appeared only the pre-homos bothered to come down from the trees, but 23 million years ago monkey lumbar spines were showing preparatory changes while still in the trees. It seems to me only God can provide the push to advance.

dhw: As I keep pointing out, evolution takes place in individual organisms. The emergence of one species from another does not mean the preceding species dies out. Pre-homos diverged from their ape ancestors, who stayed in the trees. That is the process of common descent we both believe in. We have no idea what lumbar-changing monkeys were up to 23 million years ago. Maybe they spent 50% of their time in the trees and 50% on the ground. Most of the changes you focus on are saltations (only God can do them), but now we have preparatory work, which clearly indicates a gradual process (and only God can do that too). If your God’s prime purpose was to produce Homo sapiens and his brain, do you really think he was incapable of doing it without millions of years of “preparatory” work?

Since we do not see direct creation but evolution, that must be God's preference. His ability to directly create is seen in saltations of irreducibly complex mechanisms.

Evolution: frog adaptation

by dhw, Sunday, September 17, 2017, 10:34 (2623 days ago) @ David Turell

DAVID: You and I will always differ on where the spark comes from. The increase in oxygen provided the energy for the complex animals of the Cambrian to appear. It did not require their appearance.

dhw: As we have agreed a thousand times, no appearance was “required” beyond that of bacteria. That is why I go beyond survival to improvement. New conditions present new opportunities, and these were provided by the increase in oxygen.

DAVID: But as the frogs show, new opportunities does not mean they are always taken.

If my hypothesis is correct, evolution depends on the intelligence of the cell communities that all individual organisms consist of. Some will exploit opportunities to innovate, and some will remain as they are, and some will die out.

Dhw: If your God’s prime purpose was to produce Homo sapiens and his brain, do you really think he was incapable of doing it without millions of years of “preparatory” work?

DAVID: Since we do not see direct creation but evolution, that must be God's preference. His ability to directly create is seen in saltations of irreducibly complex mechanisms.

Since we see the evolution of apes to hominins to humans to sapiens instead of direct creation of sapiens, and we see the evolution of pre-whales to whales, and we see the evolution of countless other species, lifestyles and natural wonders with no conceivable connection to the brain of Homo sapiens, perhaps it was your God’s preference to let evolution run its own course.

Evolution: frog adaptation

by David Turell @, Sunday, September 17, 2017, 15:19 (2622 days ago) @ dhw

DAVID: Since we do not see direct creation but evolution, that must be God's preference. His ability to directly create is seen in saltations of irreducibly complex mechanisms.

dhw: Since we see the evolution of apes to hominins to humans to sapiens instead of direct creation of sapiens, and we see the evolution of pre-whales to whales, and we see the evolution of countless other species, lifestyles and natural wonders with no conceivable connection to the brain of Homo sapiens, perhaps it was your God’s preference to let evolution run its own course.

Your proposal ignores the obvious increasing complexity shown in evolution, which requires foresight and planning by a designing mind, an evolution which ends in the human brain, the most complex evolved organ so far. Animals do not have the demonstrated ability to change autonomously beyond minor adaptations.

Evolution: frog adaptation

by dhw, Monday, September 18, 2017, 10:04 (2622 days ago) @ David Turell

dhw: Since we see the evolution of apes to hominins to humans to sapiens instead of direct creation of sapiens, and we see the evolution of pre-whales to whales, and we see the evolution of countless other species, lifestyles and natural wonders with no conceivable connection to the brain of Homo sapiens, perhaps it was your God’s preference to let evolution run its own course.

DAVID: Your proposal ignores the obvious increasing complexity shown in evolution, which requires foresight and planning by a designing mind, an evolution which ends in the human brain, the most complex evolved organ so far. Animals do not have the demonstrated ability to change autonomously beyond minor adaptations.

Once again: my proposal attributes the obvious increasing complexity to a process of innovation that requires a perhaps God-given intelligence to respond to and exploit new opportunities. I have no trouble accepting that the human brain is the most complex evolved organ so far. That doesn’t mean your God designed life and evolution for the sake of the human brain. I have agreed many times that the capacity for major adaptations and innovations has not been demonstrated, which is why it is a hypothesis, as unproven as (though far more logical than) the hypothesis that an unknown, hidden and sourceless intelligence preprogrammed or dabbled eight stages of whale, monarch butterflies’ reproduction and navigation, and weaverbirds’ nests in order to produce the human brain.

Evolution: frog adaptation

by David Turell @, Monday, September 18, 2017, 15:34 (2621 days ago) @ dhw

dhw: Since we see the evolution of apes to hominins to humans to sapiens instead of direct creation of sapiens, and we see the evolution of pre-whales to whales, and we see the evolution of countless other species, lifestyles and natural wonders with no conceivable connection to the brain of Homo sapiens, perhaps it was your God’s preference to let evolution run its own course.

DAVID: Your proposal ignores the obvious increasing complexity shown in evolution, which requires foresight and planning by a designing mind, an evolution which ends in the human brain, the most complex evolved organ so far. Animals do not have the demonstrated ability to change autonomously beyond minor adaptations.

dhw: Once again: my proposal attributes the obvious increasing complexity to a process of innovation that requires a perhaps God-given intelligence to respond to and exploit new opportunities. I have no trouble accepting that the human brain is the most complex evolved organ so far. That doesn’t mean your God designed life and evolution for the sake of the human brain. I have agreed many times that the capacity for major adaptations and innovations has not been demonstrated, which is why it is a hypothesis, as unproven as (though far more logical than) the hypothesis that an unknown, hidden and sourceless intelligence preprogrammed or dabbled eight stages of whale, monarch butterflies’ reproduction and navigation, and weaverbirds’ nests in order to produce the human brain.

Note my bold: do you agree intelligent planning is required for the increasing complexity?

Evolution: frog adaptation

by dhw, Tuesday, September 19, 2017, 11:47 (2620 days ago) @ David Turell

dhw: Once again: my proposal attributes the obvious increasing complexity to a process of innovation that requires a perhaps God-given intelligence to respond to and exploit new opportunities. I have no trouble accepting that the human brain is the most complex evolved organ so far. That doesn’t mean your God designed life and evolution for the sake of the human brain. I have agreed many times that the capacity for major adaptations and innovations has not been demonstrated, which is why it is a hypothesis, as unproven as (though far more logical than) the hypothesis that an unknown, hidden and sourceless intelligence preprogrammed or dabbled eight stages of whale, monarch butterflies’ reproduction and navigation, and weaverbirds’ nests in order to produce the human brain.

DAVID: Note my bold: do you agree intelligent planning is required for the increasing complexity?

No. The whole point of my hypothesis is that organisms RESPOND to challenges and opportunities by using their perhaps God-given intelligence. It may even be that some opportunities are discovered by chance (particularly in the case of natural wonders), but even then it takes intelligence to recognize the benefits of a chance discovery and build on them. The key to my hypothesis is intelligent RESPONSE, not crystal ball gazing followed by planning followed by the actual events that demand or allow the physical change, which may or may not entail an increase in complexity.

Evolution: frog adaptation

by David Turell @, Tuesday, September 19, 2017, 14:54 (2620 days ago) @ dhw

dhw: Once again: my proposal attributes the obvious increasing complexity to a process of innovation that requires a perhaps God-given intelligence to respond to and exploit new opportunities. I have no trouble accepting that the human brain is the most complex evolved organ so far. That doesn’t mean your God designed life and evolution for the sake of the human brain. I have agreed many times that the capacity for major adaptations and innovations has not been demonstrated, which is why it is a hypothesis, as unproven as (though far more logical than) the hypothesis that an unknown, hidden and sourceless intelligence preprogrammed or dabbled eight stages of whale, monarch butterflies’ reproduction and navigation, and weaverbirds’ nests in order to produce the human brain.

DAVID: Note my bold: do you agree intelligent planning is required for the increasing complexity?

dhw: No. The whole point of my hypothesis is that organisms RESPOND to challenges and opportunities by using their perhaps God-given intelligence. It may even be that some opportunities are discovered by chance (particularly in the case of natural wonders), but even then it takes intelligence to recognize the benefits of a chance discovery and build on them. The key to my hypothesis is intelligent RESPONSE, not crystal ball gazing followed by planning followed by the actual events that demand or allow the physical change, which may or may not entail an increase in complexity.

Once again you are skipping over the issue of gaps in the fossil record. Even the few intermediate forms are giant leaps in form and function. You do not answer how this is covered. My answer is foresight and planning to look at a current goal.. No crystal ball fuzziness required.

Evolution: frog adaptation

by dhw, Wednesday, September 20, 2017, 13:31 (2619 days ago) @ David Turell

DAVID: Note my bold: do you agree intelligent planning is required for the increasing complexity?

dhw: No. The whole point of my hypothesis is that organisms RESPOND to challenges and opportunities by using their perhaps God-given intelligence. It may even be that some opportunities are discovered by chance (particularly in the case of natural wonders), but even then it takes intelligence to recognize the benefits of a chance discovery and build on them. The key to my hypothesis is intelligent RESPONSE, not crystal ball gazing followed by planning followed by the actual events that demand or allow the physical change, which may or may not entail an increase in complexity.

DAVID: Once again you are skipping over the issue of gaps in the fossil record. Even the few intermediate forms are giant leaps in form and function. You do not answer how this is covered. My answer is foresight and planning to look at a current goal.. No crystal ball fuzziness required.

You can’t plan unless you know what you are planning for, i.e. future conditions. That is crystal ball gazing, unless you are arguing that your God preprogrammed every environmental change in the history of evolution.

The gaps are saltations, i.e. major adaptations or innovations with no known intermediate stages. These are the great mystery of evolution. Your hypothesis is that your God preprogrammed every single one 3.8 billion years ago, or dabbled them personally, even though his primary aim was to produce the human brain. My hypothesis is that cell communities have the intelligence (possibly God-given) to design their own major adaptations or innovations. You’ve heard all this a hundred times over, so why you regard it as “skipping the issue” of gaps, i.e. of saltatory major adaptations or innovations, I don’t know.

Evolution: frog adaptation

by David Turell @, Wednesday, September 20, 2017, 14:59 (2619 days ago) @ dhw

DAVID: Note my bold: do you agree intelligent planning is required for the increasing complexity?

dhw: No. The whole point of my hypothesis is that organisms RESPOND to challenges and opportunities by using their perhaps God-given intelligence. It may even be that some opportunities are discovered by chance (particularly in the case of natural wonders), but even then it takes intelligence to recognize the benefits of a chance discovery and build on them. The key to my hypothesis is intelligent RESPONSE, not crystal ball gazing followed by planning followed by the actual events that demand or allow the physical change, which may or may not entail an increase in complexity.

DAVID: Once again you are skipping over the issue of gaps in the fossil record. Even the few intermediate forms are giant leaps in form and function. You do not answer how this is covered. My answer is foresight and planning to look at a current goal.. No crystal ball fuzziness required.

dhw: You can’t plan unless you know what you are planning for, i.e. future conditions. That is crystal ball gazing, unless you are arguing that your God preprogrammed every environmental change in the history of evolution.

The gaps are saltations, i.e. major adaptations or innovations with no known intermediate stages. These are the great mystery of evolution. Your hypothesis is that your God preprogrammed every single one 3.8 billion years ago, or dabbled them personally, even though his primary aim was to produce the human brain. My hypothesis is that cell communities have the intelligence (possibly God-given) to design their own major adaptations or innovations. You’ve heard all this a hundred times over, so why you regard it as “skipping the issue” of gaps, i.e. of saltatory major adaptations or innovations, I don’t know.

You skip over the point as usual. Please look at the whales. We both know exactly what conditions have to be planned for to have an air breathing mammal enter water as a full time environment. You constantly overlook the issue of purpose. Darwinism doesn't know where it is going. Evolution is either chance or knows where it is going. Whether you realize it or not, you start your thinking from a chance approach.

Evolution: frog adaptation

by dhw, Thursday, September 21, 2017, 12:58 (2618 days ago) @ David Turell

DAVID: Once again you are skipping over the issue of gaps in the fossil record. Even the few intermediate forms are giant leaps in form and function. You do not answer how this is covered. My answer is foresight and planning to look at a current goal.. No crystal ball fuzziness required.

dhw: You can’t plan unless you know what you are planning for, i.e. future conditions. That is crystal ball gazing, unless you are arguing that your God preprogrammed every environmental change in the history of evolution.
The gaps are saltations, i.e. major adaptations or innovations with no known intermediate stages. These are the great mystery of evolution. Your hypothesis is that your God preprogrammed every single one 3.8 billion years ago, or dabbled them personally, even though his primary aim was to produce the human brain. My hypothesis is that cell communities have the intelligence (possibly God-given) to design their own major adaptations or innovations. You’ve heard all this a hundred times over, so why you regard it as “skipping the issue” of gaps, i.e. of saltatory major adaptations or innovations, I don’t know.

DAVID: You skip over the point as usual. Please look at the whales. We both know exactly what conditions have to be planned for to have an air breathing mammal enter water as a full time environment. You constantly overlook the issue of purpose. Darwinism doesn't know where it is going. Evolution is either chance or knows where it is going. Whether you realize it or not, you start your thinking from a chance approach.

You start with the assumption that the whale entered the water fully equipped for aquatic life (although incomprehensibly for you, it took your God eight stages and millions of years to perfect the equipment). From my perspective, this is the wrong starting point. Pre-whale would have entered the water to explore. From then on, each stage would have been an improvement, as it adapted to life in the water, which was its purpose. You yourself keep admitting that you don’t know the purpose of the eight-stage whale, let alone how it links up with what you keep saying is God’s primary purpose, the production of the brain of Homo sapiens. As for my thinking, it starts with the unknown factor of how life originated, and I cannot believe in chance or in God, which is why I remain agnostic. From the moment living forms appear, I regard them as pursuing the purposes of survival and/or improvement, and the only chance element is environmental change. If God exists, I suspect that his purpose was to produce a show for himself (but this need not mean detachment – he could have feelings just like ours). If he does not exist, the universe has no purpose, but organisms have their own purposes, as above. I don’t think I can express it any more clearly.

Evolution: frog adaptation

by David Turell @, Thursday, September 21, 2017, 15:12 (2618 days ago) @ dhw


DAVID: You skip over the point as usual. Please look at the whales. We both know exactly what conditions have to be planned for to have an air breathing mammal enter water as a full time environment. You constantly overlook the issue of purpose. Darwinism doesn't know where it is going. Evolution is either chance or knows where it is going. Whether you realize it or not, you start your thinking from a chance approach.

dhw: You start with the assumption that the whale entered the water fully equipped for aquatic life (although incomprehensibly for you, it took your God eight stages and millions of years to perfect the equipment). From my perspective, this is the wrong starting point. Pre-whale would have entered the water to explore. From then on, each stage would have been an improvement, as it adapted to life in the water, which was its purpose. You yourself keep admitting that you don’t know the purpose of the eight-stage whale, let alone how it links up with what you keep saying is God’s primary purpose, the production of the brain of Homo sapiens. As for my thinking, it starts with the unknown factor of how life originated, and I cannot believe in chance or in God, which is why I remain agnostic. From the moment living forms appear, I regard them as pursuing the purposes of survival and/or improvement, and the only chance element is environmental change. If God exists, I suspect that his purpose was to produce a show for himself (but this need not mean detachment – he could have feelings just like ours). If he does not exist, the universe has no purpose, but organisms have their own purposes, as above. I don’t think I can express it any more clearly.

Again skipping over the clear problem. Your pre-whale wishes to live in water. He has purpose. Now he needs to design some changes so he can achieve his goal. He has to understand what is required in order to modify. He needs to see needs in his future role. You gloss over this entire problem of how " [they] pursu[e] the purposes of survival and/or improvement". Something must be acting with foresight to cover the large gaps in form and physiology that the fossil record shows. Your cover your nebulous concept with the word "pursue" or "pursuing". We know that only a mind can plan. This is the basis of the ID philosophy. You could accept that and not include God.

Evolution: frog adaptation

by dhw, Friday, September 22, 2017, 13:15 (2617 days ago) @ David Turell

DAVID: Again skipping over the clear problem. Your pre-whale wishes to live in water. He has purpose. Now he needs to design some changes so he can achieve his goal. He has to understand what is required in order to modify. He needs to see needs in his future role.

He, or rather his cell communities, must design changes, and they have to understand the problems, but this does not relate to the future. To put it in concrete terms: legs are not as useful in water as fins. The pre-whale is in the water. The cell communities work out a way of changing the legs to fins, just as cell communities work out ways of changing short beaks into long beaks (your epigenetic changes). This is not future planning. It is adjusting to present conditions.

DAVID: You gloss over this entire problem of how " [they] pursu[e] the purposes of survival and/or improvement". Something must be acting with foresight to cover the large gaps in form and physiology that the fossil record shows. Your cover your nebulous concept with the word "pursue" or "pursuing".

There is no glossing over. We know from minor adaptations that organisms react to their present circumstances, and change accordingly. They do not look into a crystal ball and forecast the conditions that will require them to change. You accept this for minor but not for major changes. What we don’t know is the mechanism that enables them to accomplish the latter. You say it is a divine 3.8-billion-year-old computer programme or direct dabbling by your God. I propose that it is the same cellular intelligence that enables them to accomplish the minor changes.

DAVID: We know that only a mind can plan. This is the basis of the ID philosophy. You could accept that and not include God.

I accept that only intelligence of some kind can produce the minor and major adaptations and innovations that have resulted in the great evolutionary bush of life. I also accept the possibility that this intelligence was invented by your God. I do not accept that these adaptations and innovations must be planned in advance.

Meanwhile, you continue to gloss over the dislocation between your God’s so-called prime purpose and the higgledy-piggledy bush, which includes the story of the whale, plus the problem of why your all-powerful God needed eight stages and millions of years to come up with his final version of the whale, as well as the huge problem of the extent to which your planning God plans all the environmental changes, local and global, that trigger organismal change.

Evolution: frog adaptation

by David Turell @, Friday, September 22, 2017, 15:11 (2617 days ago) @ dhw


DAVID: We know that only a mind can plan. This is the basis of the ID philosophy. You could accept that and not include God.

dhw: I accept that only intelligence of some kind can produce the minor and major adaptations and innovations that have resulted in the great evolutionary bush of life. I also accept the possibility that this intelligence was invented by your God. I do not accept that these adaptations and innovations must be planned in advance.

Meanwhile, you continue to gloss over the dislocation between your God’s so-called prime purpose and the higgledy-piggledy bush, which includes the story of the whale, plus the problem of why your all-powerful God needed eight stages and millions of years to come up with his final version of the whale, as well as the huge problem of the extent to which your planning God plans all the environmental changes, local and global, that trigger organismal change.

If nothing is planned in advance to accommodate required change, can you explain the latest buildings in London? As for God's methods, I simply accept that He evolves solutions.

Evolution: frog adaptation

by dhw, Saturday, September 23, 2017, 12:54 (2616 days ago) @ David Turell

DAVID: We know that only a mind can plan. This is the basis of the ID philosophy. You could accept that and not include God.

dhw: I accept that only intelligence of some kind can produce the minor and major adaptations and innovations that have resulted in the great evolutionary bush of life. I also accept the possibility that this intelligence was invented by your God. I do not accept that these adaptations and innovations must be planned in advance.
Meanwhile, you continue to gloss over the dislocation between your God’s so-called prime purpose and the higgledy-piggledy bush, which includes the story of the whale, plus the problem of why your all-powerful God needed eight stages and millions of years to come up with his final version of the whale, as well as the huge problem of the extent to which your planning God plans all the environmental changes, local and global, that trigger organismal change.

DAVID: If nothing is planned in advance to accommodate required change, can you explain the latest buildings in London? As for God's methods, I simply accept that He evolves solutions.

I have never said that humans do not plan in advance. So do many animals. I don’t know why you think the process of evolution is the same as the process of building houses. Houses, in case you hadn’t noticed, are inanimate, inorganic objects which as far as we know are incapable of reproducing themselves and of communicating with one another and of taking decisions. In that respect they are no different from birds’ nests and anthills. There is absolutely no parallel between the inorganic products of intelligence and the organic changes which organisms undergo during the process of evolution. You insist that your God preprogrammed or dabbled them all in advance. I propose that intelligent organisms (cell communities) responded to the challenges and opportunities offered by a changing environment. My hypothesis provides an answer to some of the questions that your hypothesis engenders, which are summarized above and which you continue to gloss over.

Evolution: frog adaptation

by David Turell @, Saturday, September 23, 2017, 14:45 (2616 days ago) @ dhw

DAVID: We know that only a mind can plan. This is the basis of the ID philosophy. You could accept that and not include God.

dhw: I accept that only intelligence of some kind can produce the minor and major adaptations and innovations that have resulted in the great evolutionary bush of life. I also accept the possibility that this intelligence was invented by your God. I do not accept that these adaptations and innovations must be planned in advance.
Meanwhile, you continue to gloss over the dislocation between your God’s so-called prime purpose and the higgledy-piggledy bush, which includes the story of the whale, plus the problem of why your all-powerful God needed eight stages and millions of years to come up with his final version of the whale, as well as the huge problem of the extent to which your planning God plans all the environmental changes, local and global, that trigger organismal change.

DAVID: If nothing is planned in advance to accommodate required change, can you explain the latest buildings in London? As for God's methods, I simply accept that He evolves solutions.

dhw: I have never said that humans do not plan in advance. So do many animals. I don’t know why you think the process of evolution is the same as the process of building houses. Houses, in case you hadn’t noticed, are inanimate, inorganic objects which as far as we know are incapable of reproducing themselves and of communicating with one another and of taking decisions. In that respect they are no different from birds’ nests and anthills. There is absolutely no parallel between the inorganic products of intelligence and the organic changes which organisms undergo during the process of evolution. You insist that your God preprogrammed or dabbled them all in advance. I propose that intelligent organisms (cell communities) responded to the challenges and opportunities offered by a changing environment. My hypothesis provides an answer to some of the questions that your hypothesis engenders, which are summarized above and which you continue to gloss over.

It is amazing to me that you cannot recognize the need for planning the changes that must occur within the gaps in the fossil record. I'm not glossing. I see the need for intelligent planning. You simply do not. Of course speciation is due to 'challenges and opportunities'. I'm suggesting a portion of the requirements, planning with foresight and then changing. Nothing else will work.

Evolution: frog adaptation

by dhw, Sunday, September 24, 2017, 13:26 (2615 days ago) @ David Turell

dhw: There is absolutely no parallel between the inorganic products of intelligence and the organic changes which organisms undergo during the process of evolution. You insist that your God preprogrammed or dabbled them all in advance. I propose that intelligent organisms (cell communities) responded to the challenges and opportunities offered by a changing environment. My hypothesis provides an answer to some of the questions that your hypothesis engenders, which are summarized above and which you continue to gloss over.

DAVID: It is amazing to me that you cannot recognize the need for planning the changes that must occur within the gaps in the fossil record. I'm not glossing. I see the need for intelligent planning. You simply do not. Of course speciation is due to 'challenges and opportunities'. I'm suggesting a portion of the requirements, planning with foresight and then changing. Nothing else will work.

I’m delighted at your recognition of the fact that speciation is due to challenges and opportunities. It is amazing to me that you cannot recognize that these challenges and opportunities must arise before organisms change. Why would a pre-whale’s legs change to fins before it even found out that life in the water was better for it than life on land? The very idea of your all-powerful God fiddling with it in advance, and then doing seven more fiddles over the next few million years (“Oops, forgot the blowhole!”) as he perfects the process, while all the time actually wanting to produce the brain of Homo sapiens, stretches credulity to snapping point. But NB, my hypothesis is not atheistic, just in case you scurry back to origins. The (hypothetical) mechanism that would enable organisms to respond to (as opposed to prepare for) challenges and opportunities may have been your God’s invention.

Evolution: frog adaptation

by David Turell @, Sunday, September 24, 2017, 14:50 (2615 days ago) @ dhw

DAVID: It is amazing to me that you cannot recognize the need for planning the changes that must occur within the gaps in the fossil record. I'm not glossing. I see the need for intelligent planning. You simply do not. Of course speciation is due to 'challenges and opportunities'. I'm suggesting a portion of the requirements, planning with foresight and then changing. Nothing else will work.

dhw: I’m delighted at your recognition of the fact that speciation is due to challenges and opportunities. It is amazing to me that you cannot recognize that these challenges and opportunities must arise before organisms change. Why would a pre-whale’s legs change to fins before it even found out that life in the water was better for it than life on land? The very idea of your all-powerful God fiddling with it in advance, and then doing seven more fiddles over the next few million years (“Oops, forgot the blowhole!”) as he perfects the process, while all the time actually wanting to produce the brain of Homo sapiens, stretches credulity to snapping point. But NB, my hypothesis is not atheistic, just in case you scurry back to origins. The (hypothetical) mechanism that would enable organisms to respond to (as opposed to prepare for) challenges and opportunities may have been your God’s invention.

But I'll stick with the requirement that changes required by challenges and opportunities require foresight and planning to jump the gaps. Thank you for noting God might have helped. And note you have never answered the problem of the gaps as exemplified by the Cambrian animals.

Evolution: frog adaptation

by dhw, Monday, September 25, 2017, 13:24 (2614 days ago) @ David Turell

DAVID: It is amazing to me that you cannot recognize the need for planning the changes that must occur within the gaps in the fossil record. I'm not glossing. I see the need for intelligent planning. You simply do not. Of course speciation is due to 'challenges and opportunities'. I'm suggesting a portion of the requirements, planning with foresight and then changing. Nothing else will work.

dhw: I’m delighted at your recognition of the fact that speciation is due to challenges and opportunities. It is amazing to me that you cannot recognize that these challenges and opportunities must arise before organisms change. Why would a pre-whale’s legs change to fins before it even found out that life in the water was better for it than life on land? The very idea of your all-powerful God fiddling with it in advance, and then doing seven more fiddles over the next few million years (“Oops, forgot the blowhole!”) as he perfects the process, while all the time actually wanting to produce the brain of Homo sapiens, stretches credulity to snapping point. But NB, my hypothesis is not atheistic, just in case you scurry back to origins. The (hypothetical) mechanism that would enable organisms to respond to (as opposed to prepare for) challenges and opportunities may have been your God’s invention.

DAVID: But I'll stick with the requirement that changes required by challenges and opportunities require foresight and planning to jump the gaps. Thank you for noting God might have helped. And note you have never answered the problem of the gaps as exemplified by the Cambrian animals.

So you will stick with your “explanation” that you don’t know why your God prepared pre-whales for life in the water eight different times over several million years, although his prime purpose was to create the human brain. My hypothesis is not that God “helped” but that if he exists, he provided the mechanism enabling organisms to help themselves. The problem of the Cambrian gaps is solved if the autonomous mechanism for minor adaptations is also capable of major adaptations and innovations in response to the challenges and opportunities presented by changes in the environment. I accept that this is the big “IF”. The problem is also solved if there is an unknown, sourceless, intelligent mind that preprogrammed every single environmental change, major adaptation and innovation 3.8 billion years ago, or kept popping down to Earth to do the necessary. That is also a big “IF”.

Evolution: frog adaptation

by David Turell @, Monday, September 25, 2017, 16:13 (2614 days ago) @ dhw


DAVID: But I'll stick with the requirement that changes required by challenges and opportunities require foresight and planning to jump the gaps. Thank you for noting God might have helped. And note you have never answered the problem of the gaps as exemplified by the Cambrian animals.

dhw: So you will stick with your “explanation” that you don’t know why your God prepared pre-whales for life in the water eight different times over several million years, although his prime purpose was to create the human brain. My hypothesis is not that God “helped” but that if he exists, he provided the mechanism enabling organisms to help themselves. The problem of the Cambrian gaps is solved if the autonomous mechanism for minor adaptations is also capable of major adaptations and innovations in response to the challenges and opportunities presented by changes in the environment. I accept that this is the big “IF”. The problem is also solved if there is an unknown, sourceless, intelligent mind that preprogrammed every single environmental change, major adaptation and innovation 3.8 billion years ago, or kept popping down to Earth to do the necessary. That is also a big “IF”.

Yes big IF's. But those are the only two choices. The Cambrian gap was Darwin's biggest bugaboo. The sudden appearance of such complex organisms require enormous elements of foresight and planning. Within our experience we know that only a planning mind can accomplish such developments. That mind must exist.

Evolution: frog adaptation

by dhw, Tuesday, September 26, 2017, 12:14 (2613 days ago) @ David Turell

dhw: (under “Trees induce ants…” Another agreement. Today is a red letter day! Now we agree that bacteria are conscious, and that organisms have an autonomous, possibly God-given mechanism through which they can make changes to themselves without any input from your God. Therefore “God did it” could mean that he did it by providing cells/cell communities with the intelligence to create ALL the adaptations and innovations that have taken place throughout evolution.

DAVID: That is a jump in possibilities that I cannot accept. The gaps in evolution require foresight and planning that only a planning mind can provide.

Dhw (on this thread): So you will stick with your “explanation” that you don’t know why your God prepared pre-whales for life in the water eight different times over several million years, although his prime purpose was to create the human brain. […] The problem of the Cambrian gaps is solved if the autonomous mechanism for minor adaptations is also capable of major adaptations and innovations in response to the challenges and opportunities presented by changes in the environment. I accept that this is the big “IF”. The problem is also solved if there is an unknown, sourceless, intelligent mind that preprogrammed every single environmental change, major adaptation and innovation 3.8 billion years ago, or kept popping down to Earth to do the necessary. That is also a big “IF”.

DAVID: Yes big IF's. But those are the only two choices. The Cambrian gap was Darwin's biggest bugaboo. The sudden appearance of such complex organisms require enormous elements of foresight and planning. Within our experience we know that only a planning mind can accomplish such developments. That mind must exist.

We have no experience of such developments. None of us were around at the time, and so we do not “know” anything. We speculate. Why should it be beyond the bounds of possibility that your all-powerful God could invent a mechanism capable of autonomous innovation? Besides, we should not forget that your hypothesis is not confined to Cambrian gaps, or are you now withdrawing your insistence that only your God could have designed the weaverbird’s nest, the monarch’s lifestyle, the parasitic wasp etc.?

Evolution: frog adaptation

by David Turell @, Tuesday, September 26, 2017, 17:19 (2613 days ago) @ dhw


DAVID: Yes big IF's. But those are the only two choices. The Cambrian gap was Darwin's biggest bugaboo. The sudden appearance of such complex organisms require enormous elements of foresight and planning. Within our experience we know that only a planning mind can accomplish such developments. That mind must exist.

dhw: We have no experience of such developments. None of us were around at the time, and so we do not “know” anything. We speculate. Why should it be beyond the bounds of possibility that your all-powerful God could invent a mechanism capable of autonomous innovation? Besides, we should not forget that your hypothesis is not confined to Cambrian gaps, or are you now withdrawing your insistence that only your God could have designed the weaverbird’s nest, the monarch’s lifestyle, the parasitic wasp etc.?

I think God stepped in at many levels. I've not changed. I don 't know why it is so important to you that God gave organisms an inventive mechanism. It is just an other way for God to be in control. I use God's control as signifying a purpose in how evolution plays out. Are you trying to get rid of purpose?

Evolution: frog adaptation

by dhw, Wednesday, September 27, 2017, 10:56 (2612 days ago) @ David Turell

DAVID: Yes big IF's. But those are the only two choices. The Cambrian gap was Darwin's biggest bugaboo. The sudden appearance of such complex organisms require enormous elements of foresight and planning. Within our experience we know that only a planning mind can accomplish such developments. That mind must exist.

dhw: We have no experience of such developments. None of us were around at the time, and so we do not “know” anything. We speculate. Why should it be beyond the bounds of possibility that your all-powerful God could invent a mechanism capable of autonomous innovation? Besides, we should not forget that your hypothesis is not confined to Cambrian gaps, or are you now withdrawing your insistence that only your God could have designed the weaverbird’s nest, the monarch’s lifestyle, the parasitic wasp etc.?

DAVID: I think God stepped in at many levels. I've not changed. I don't know why it is so important to you that God gave organisms an inventive mechanism. It is just an other way for God to be in control. I use God's control as signifying a purpose in how evolution plays out. Are you trying to get rid of purpose?

We have spent years discussing your proposal that your God’s prime purpose was to create the brain of Homo sapiens – a hypothesis that throws up so many illogicalities in relation to the higgledy-piggledy bush of life that even you admit to not understanding much of it. I am proposing that instead of your God controlling every innovation, lifestyle and natural wonder in the history of evolution, he set the wheels in motion by creating an autonomous inventive mechanism (though he could dabble if he wished to). We have just devoted several posts to discussing my suggestion that by doing so he created a show that he watches and is interested in. That is a purpose to which you have agreed (with the strange proviso that you don't know what watching and interest mean to God). It also explains the higgledy-piggledy bush. At last you have recognized that my hypothesis does not exclude your God or limit his powers other than when he decides to let organisms (including humans) control themselves. What it does do is offer an explanation of evolution that eliminates all the illogicalities and unanswered questions that bedevil your own hypothesis. To echo your post: I don’t know why it is so important to you to have your God designing the weaverbird’s nest.

Evolution: frog adaptation

by David Turell @, Wednesday, September 27, 2017, 17:25 (2612 days ago) @ dhw

DAVID: Yes big IF's. But those are the only two choices. The Cambrian gap was Darwin's biggest bugaboo. The sudden appearance of such complex organisms require enormous elements of foresight and planning. Within our experience we know that only a planning mind can accomplish such developments. That mind must exist.

dhw: We have no experience of such developments. None of us were around at the time, and so we do not “know” anything. We speculate. Why should it be beyond the bounds of possibility that your all-powerful God could invent a mechanism capable of autonomous innovation? Besides, we should not forget that your hypothesis is not confined to Cambrian gaps, or are you now withdrawing your insistence that only your God could have designed the weaverbird’s nest, the monarch’s lifestyle, the parasitic wasp etc.?

DAVID: I think God stepped in at many levels. I've not changed. I don't know why it is so important to you that God gave organisms an inventive mechanism. It is just an other way for God to be in control. I use God's control as signifying a purpose in how evolution plays out. Are you trying to get rid of purpose?

dhw: We have spent years discussing your proposal that your God’s prime purpose was to create the brain of Homo sapiens – a hypothesis that throws up so many illogicalities in relation to the higgledy-piggledy bush of life that even you admit to not understanding much of it. I am proposing that instead of your God controlling every innovation, lifestyle and natural wonder in the history of evolution, he set the wheels in motion by creating an autonomous inventive mechanism (though he could dabble if he wished to). We have just devoted several posts to discussing my suggestion that by doing so he created a show that he watches and is interested in. That is a purpose to which you have agreed (with the strange proviso that you don't know what watching and interest mean to God). It also explains the higgledy-piggledy bush. At last you have recognized that my hypothesis does not exclude your God or limit his powers other than when he decides to let organisms (including humans) control themselves. What it does do is offer an explanation of evolution that eliminates all the illogicalities and unanswered questions that bedevil your own hypothesis. To echo your post: I don’t know why it is so important to you to have your God designing the weaverbird’s nest.

Once again you have God giving organisms the ability to speciate as an alternative to my approach. At the same time you have allowed God to dabble. This means in your thinking God can control all of evolution if He wishes. But at the same time you propose He lets things run along producing what the organisms wish to invent. So basically you are inventing God in two ways! I chose one approach. I don't think you can have it both ways. But since you don't accept God, I'm not surprised. My bush is balance of nature, which explanation satisfies me. It is required.

Evolution: frog adaptation

by dhw, Thursday, September 28, 2017, 13:02 (2611 days ago) @ David Turell

DAVID: Once again you have God giving organisms the ability to speciate as an alternative to my approach. At the same time you have allowed God to dabble. This means in your thinking God can control all of evolution if He wishes. But at the same time you propose He lets things run along producing what the organisms wish to invent. So basically you are inventing God in two ways! I chose one approach. I don't think you can have it both ways. But since you don't accept God, I'm not surprised. My bush is balance of nature, which explanation satisfies me. It is required.

My non-aceptance/non-rejection of your God has nothing to do with the way we think he might have operated. You have now agreed that he has created a show which he watches with interest in his own special way. As the all-powerful creator, of course he can let the show run itself or he can interfere if he feels like it. There is nothing contradictory in this. Humans use such options all the time as circumstances change. But your “one approach” entails a show which has the prime purpose of producing the brain of Homo sapiens, while at the same time it also entails your God specially creating the whale in eight different stages, designing the weaverbird’s nest, equipping moths and frogs with poisons that won’t harm them, preparing monarch butterflies for their migration, plus millions of other innovations, lifestyles and natural wonders, 99% of which have come and gone. Clearly they have nothing to do with producing the brain of Homo sapiens, and you have agreed that “balance of nature” means nothing more than that life goes on, regardless of whether humans are there or not. So could it be that you are now saying your God specially designs all these things for the sake of the show (of which humans are simply one part), which he watches with interest in his own special way?

Evolution: frog adaptation

by David Turell @, Thursday, September 28, 2017, 14:34 (2611 days ago) @ dhw

DAVID: Once again you have God giving organisms the ability to speciate as an alternative to my approach. At the same time you have allowed God to dabble. This means in your thinking God can control all of evolution if He wishes. But at the same time you propose He lets things run along producing what the organisms wish to invent. So basically you are inventing God in two ways! I chose one approach. I don't think you can have it both ways. But since you don't accept God, I'm not surprised. My bush is balance of nature, which explanation satisfies me. It is required.

dhw: My non-aceptance/non-rejection of your God has nothing to do with the way we think he might have operated. You have now agreed that he has created a show which he watches with interest in his own special way. As the all-powerful creator, of course he can let the show run itself or he can interfere if he feels like it. There is nothing contradictory in this. Humans use such options all the time as circumstances change. But your “one approach” entails a show which has the prime purpose of producing the brain of Homo sapiens, while at the same time it also entails your God specially creating the whale in eight different stages, designing the weaverbird’s nest, equipping moths and frogs with poisons that won’t harm them, preparing monarch butterflies for their migration, plus millions of other innovations, lifestyles and natural wonders, 99% of which have come and gone. Clearly they have nothing to do with producing the brain of Homo sapiens, and you have agreed that “balance of nature” means nothing more than that life goes on, regardless of whether humans are there or not. So could it be that you are now saying your God specially designs all these things for the sake of the show (of which humans are simply one part), which he watches with interest in his own special way?

I've not changed and neither have you. Balance of nature is absolutely necessary to produce the human brain, exactly to keep solve the issue of 'life goes on' by providing the necessary energy supply, The brain is the current endpoint of evolution. The possibility of a 'show' is your side issue. I see God full of purpose, not theatrics, which might be a favorite subject of yours as a playwright.

Evolution: networks of coevolution

by David Turell @, Wednesday, October 18, 2017, 20:00 (2591 days ago) @ David Turell

The interaction of species fighting off or cooperating with other species create networks of relationships that affect each species evolution. This is a study of those networks:

https://phys.org/news/2017-10-rapid-environmental-species-vulnerable-extinction.html

"Coevolution, which occurs when species interact and adapt to each other, is often studied in the context of pair-wise interactions between mutually beneficial symbiotic partners. But many species have mutualistic interactions with multiple partners, leading to complex networks of interacting species.

***

"a group of ecologists and evolutionary biologists from five universities has attempted to understand how species coevolve within large webs of mutualistic species. The study yielded surprising findings about the relative importance of direct and indirect effects within such networks.

***

"Natural selection favors predators that are better at capturing prey, prey that have better defenses, and individuals that compete better against other species. Among mutualistic species, natural selection favors, for example, plants that are better at attracting pollinating insects and flower-visiting insects that are better at extracting pollen and nectar from flowers.

***
"Each web had, at one extreme, species that interact with only one other species and, at the other extreme, species that interact with many other species. When drawn as a network, each species is a node and each interaction between species is a line between two nodes. Each line is therefore a direct interaction between two species.

***
"Their analyses suggested two counterintuitive results. First, the stronger the importance of coevolutionary selection between partners, the greater the importance of indirect effects on overall evolution throughout the network. Second, in mutualisms involving multiple partners, the most specialized species—those species with the fewest direct partners—are more influenced by indirect effects than by their direct partners.

"These two results, together with other results reported in the paper, have many implications for the understanding of evolution and coevolution within webs of interacting species. Among the most important are two conclusions that link evolution, coevolution, and the rate of environmental change.

"With slow environmental change, the indirect effects of species on the evolution of other species may help mutualistic interactions persist over long periods of time. In contrast, rapid environmental change may slow the overall rate of evolution driven by direct interactions within large networks, making each species more vulnerable to extinction. With rapid environmental change, then, environments may change faster than species can adapt within large mutualistic networks.

"'The indirect effects serve to buffer the system under slow environmental change, keeping it stable. With the kinds of rapid environmental changes we're seeing now, however, this buffering effect can actually prevent species from adapting fast enough," Thompson said."

Comment: This research will help us understand more exactly how econiches work in balance of nature. It has been shown how top predators are essential. But so is cooperation. These complex networks must have existed since life began 3.6-3.8 billion years ago.

Evolution: chance, contingent or convergent

by David Turell @, Friday, October 27, 2017, 01:28 (2583 days ago) @ David Turell

A new book presents it own argument:

https://www.newscientist.com/article/mg23631480-700-a-new-book-balances-two-powerful-ri...

"IT’S one of the biggest questions in biology: is the outcome of evolution deterministic and predictable? In particular, was the evolution of human beings, or something similar, inevitable?

"Jonathan Losos, an evolutionary biologist at Harvard University, approaches this through the contrasting views of the late Stephen Jay Gould and University of Cambridge palaeontologist Simon Conway Morris.

"Gould famously argued that if we “replayed the tape of life” we would get very different outcomes, because the pattern of evolution is unpredictable. In contrast, Conway Morris claims that convergent evolution – the idea that similar conditions produce similar adaptations – is “completely ubiquitous”.

***

"Losos does not explain the reasons behind Gould’s and Conway Morris’s ideas. Nor does he fully explore how their contrasting world views (Conway Morris is a devout Christian; Gould was a Marxist) influence their thinking.

***

"Losos’s conclusion is that neither Gould nor Conway Morris is right. Faced with similar selection pressures, similar populations will indeed often produce convergent evolutionary outcomes. Even distantly related groups, such as marsupials and placental mammals, may do this – think of the marsupial and placental moles, separated by over 150 million years.

"But the process isn’t ubiquitous. Sometimes, stuff happens and evolution goes a little crazy. In New Zealand, there were no terrestrial mammals (bats aside) until humans arrived, but in a striking example of non-convergent evolution, the islands’ birds did not evolve forms resembling mammals elsewhere that have a similar ecological niche and environment.

"Alongside the widespread phenomenon of convergent evolution, life produces many unique forms. The human lineage is one such.

"But before the reader can conclude that our uniqueness suggests we are the whole point of evolution, Losos plays his trump card: the duck-billed platypus.

"This monotreme mammal has hair and a beak, and lays eggs. Like ours, its lineage is unique in the fossil record. Losos concludes that humans are no more the end-point of evolution than is the platypus, with its singular and slightly comical assemblage of characteristics. Not all evolution is convergent, he argues, and uniqueness does not imply destiny. That seems about right."

Comment: Not right to me. The platypus is simply a side branch in the bush of life, just as I think whales are. As the author of this review notes 'life produces many unique forms'. I'm still with Conway Morris.

Evolution: trying to mutate a protein

by David Turell @, Friday, November 10, 2017, 05:36 (2569 days ago) @ David Turell

Can a long series of mutations produce a desired protein. it seems the answer is no:

https://www.sciencedaily.com/releases/2017/11/171102091113.htm

"Scientists theorized that they could manipulate a protein one mutation at a time and predict its evolution. They sought to prove it. And failed. They do think, however, that they've found a fundamental truth underlying unpredictability in a biological system.

***

"While we got a surprising negative result, we were able to say why," said Michael J. Harms, a professor in the UO Department of Chemistry and Biochemistry and scientist in the Institute of Molecular Biology. "That is a positive. Our simple study provides confirmation of what many people in the field have observed repeatedly -- unpredictability. It appears it is universal."

"The research was a digital affair, done with computer simulations designed by UO doctoral student Zachary R. Sailer. He and Harms created a simple lattice protein, using an approach previously created in the Harms lab, with a random sequence of 12 amino acids. They then ran evolutionary simulations to optimize stability, a physical property of the protein.

"The goal was to use the effects of all 228 mutations known to be associated with the starting protein to predict these simulated trajectories: which mutation would occur, when, over time. The ability to project ahead faded fast after the first two mutations. After that, the anticipated trajectories went astray amid a growing number of rerouting probabilities.

"'The quality of your information actually decays over time," Sailer said. "As mutations accumulate, the effects of the mutations that you measured start to change so that you can't predict where you are going."

"In their paper, Sailer and Harms suggest that physics, particularly thermodynamics, is at play. Each mutation alters the protein in a small, but nonlinear way. This means that the effect of each mutation depends on all mutations that occurred before.

"'I think that what we showed, fundamentally, is that even if you know a lot about a system, about a protein, you cannot predict how it evolves because of the physics of the system," Harms said. "There are physical rules that limit evolution and its predictability.'"

Comment: I realize this is a computer simulation and might be open to human error in software. However, this is straightforward study and likely correct. Which raises the issue, if evolution is at the mercy of random mutation, how does any evolution occur at all? Perhaps God must HAVE to do it by Himself. The obvious appearance of purpose and directionality strongly suggests God is necessary.

Evolution: a giant nutrition step

by David Turell @, Thursday, November 30, 2017, 00:38 (2549 days ago) @ David Turell

Snowball Earth set up a huge nutritional supply when it melted:

http://bigthink.com/paul-ratner/researchers-solve-one-of-the-greatest-mysteries-of-scie...

"He set the stage for how algae had such an impact by describing an event called Snowball Earth which took place 700 million years ago. It resulted in Earth being completely frozen over for 50 million years. But once the ice started to melt, a tremendous amount of nutrients was released:

"'The Earth was frozen over for 50 million years. Huge glaciers ground entire mountain ranges to powder that released nutrients, and when the snow melted during an extreme global heating event rivers washed torrents of nutrients into the ocean," elaborated Brocks.

"The rush of nutrients and the cooling of global temperatures created the right conditions for the growth and rapid propagation of algae. The ocean was no longer just full of bacteria, moving towards hosting more complex life forms. This set of an evolutionary chain reaction that resulted in you and me.

"'These large and nutritious organisms at the base of the food web provided the burst of energy required for the evolution of complex ecosystems, where increasingly large and complex animals, including humans, could thrive on Earth," proposed Brocks.

"The research team's co-lead Dr. Amber Jarrett, who found the ancient rocks that were dated to just after the Snowball Earth period, called their discovery "ground-breaking" --

"'In these rocks we discovered striking signals of molecular fossils," said Dr Jarrett. "We immediately knew that we had made a ground-breaking discovery that snowball Earth was directly involved in the evolution of large and complex life.'"

Comment: the usual overblown description, which assumes evolution just plowed ahead once nutrition appeared. It does not tell us how multicellularity appeared, but certainly the event supplied nutrients.

Evolution: whales and hippos related?

by David Turell @, Thursday, March 15, 2018, 00:09 (2444 days ago) @ David Turell

This hew paper claims they are through a common ancestor:

https://www.livescience.com/102-cousins-whales-hippos.html

"if the idea of whales being mammals has always seemed a bit wild, then you'll probably be surprised to learn that the giant aquatic beasts are pretty closely related to the hippopotamus.

"One theory had been that hippos were related to pigs. Yet mounting evidence suggested they are closer to whales. A new study concludes that a four-footed semi-aquatic mammal that thrived for some 40 million years was a common ancestor to both whales and hippos.

"'The problem with hippos is, if you look at the general shape of the animal it could be related to horses, as the ancient Greeks thought, or pigs, as modern scientists thought, while molecular phylogeny shows a close relationship with whales," said Jean-Renaud Boisserie, a post-doctoral fellow at the University of California, Berkeley. "But cetaceans - whales, porpoises and dolphins - don't look anything like hippos."

"To complicate matters, there is a 40-million-year gap between fossils of early cetaceans and early hippos.

"Boisserie and colleagues in France say they've filled in the gap with fossils of a "water-loving animal" that evolved into two groups, early cetaceans and a group of four-legged animals called anthracotheres. The pig-like anthracotheres, which developed at least 37 distinct genera, died out less than 2.5 million years ago, leaving only one line: the hippopotamus.

"The analysis puts whales within a large group of cloven-hoofed mammals called Artiodactyla.

"That makes them relatives of cows, pigs, sheep, antelopes, camels and giraffes, too.

"The idea of whales and hippos being related has gained steam in recent years. Boisserie's team analyzed new and previous hippo, whale and anthracothere fossils to pin down anthracotheres as the missing link between hippos and cetaceans, they say.

"'Our study is the most complete to date, including lots of different taxa and a lot of new characteristics," Boisserie said. But leaving the case not quite shut, he added: "Our results are very robust and a good alternative to our findings is still to be formulated.'"

Comment: Makes sense. Hippos live in water. Buy at least they had the sense to not true to imitate fish.

Evolution: whales and hippos related? More relationships

by David Turell @, Monday, March 26, 2018, 23:14 (2432 days ago) @ David Turell

Yes they are, but other aquatic mammals have other ancestors, and they all come with constraints:

https://www.sciencedaily.com/releases/2018/03/180326152405.htm

"Anyone who has witnessed majestic whales or lumbering elephant seals in person would be forgiven for associating ocean life with unlimited size in mammals, but new research reveals that mammal growth is actually more constrained in water than on land.

***

"the group found that aquatic mammal size is bounded at the small end by the need to retain heat and at the large end by difficulties getting enough food to survive.

***

"Instead, the group found that aquatic mammal size is bounded at the small end by the need to retain heat and at the large end by difficulties getting enough food to survive. The group published their findings March 26 in Proceedings of the National Academy of Sciences.

"'Many people have viewed going into the water as more freeing for mammals, but what we're seeing is that it's actually more constraining," said co-author Jonathan Payne, a professor of geological sciences at Stanford's School of Earth, Energy & Environmental Sciences (Stanford Earth). "It's not that water allows you to be a big mammal, it's that you have to be a big mammal in water -- you don't have any other options."

"Although mammals that live in water share a similarly oblong body shape, they are not closely related. Rather, seals and sea lions are closely related to dogs, manatees share ancestry with elephants, and whales and dolphins are related to hippos and other hoofed mammals.

***

"From this analysis, the group found that once land animals take to the water, they evolve very quickly toward their new size, converging at around 1,000 pounds. Smaller ancestors like dog relatives increased in size more than larger ancestors like hippos to reach that optimal weight, suggesting that bigger is better for aquatic life, but only up to a point. The group points out that otters, which took to the water more recently, don't follow that trend, perhaps because many otter species still live much of their lives on land.

***

"The group argues that the larger size helps aquatic mammals retain heat in water that's lower than body temperature. "When you're very small, you lose heat back into the water so fast, there's no way to eat enough food to keep up," Payne said.

"They also suggest that metabolism increases with size more than an animal's ability to gather food, putting a boundary on how big aquatic mammals can grow. "Basically, animals are machines that require energy to operate. This need for energy places hard limits on what animals can do and how big they can be," said McClain, who was a co-author on the study.

***

"If otters are the exception at the small end, baleen whales prove the exception at the larger size. These whales expend much less energy on feeding than their toothed counterparts because they filter all their food, which makes them more efficient and allows them to grow larger than toothed whales.

"'The sperm whale seems to be the largest you can get without a new adaptation," Gearty said.

"'The only way to get as big as a baleen whale is to completely change how you're eating.'"

Comment: This study supports my contention that this is a strange and difficult way to evolve with all the new reasons shown

Evolution: whales and hippos related? More relationships

by dhw, Tuesday, March 27, 2018, 13:00 (2431 days ago) @ David Turell

DAVID's comment: This study supports my contention that this is a strange and difficult way to evolve with all the new reasons shown.

This study supports my contention that organisms work out their own ways of coping with the environment, as opposed to being divinely preprogrammed or dabbled with in order to keep life going for the sake of the human brain.

Evolution: whales and hippos related? More relationships

by David Turell @, Tuesday, March 27, 2018, 14:40 (2431 days ago) @ dhw

DAVID's comment: This study supports my contention that this is a strange and difficult way to evolve with all the new reasons shown.

dhw: This study supports my contention that organisms work out their own ways of coping with the environment, as opposed to being divinely preprogrammed or dabbled with in order to keep life going for the sake of the human brain.

So you think land animals convert to aquatic environment with an easy change to their physiology. It is very difficult and requires many new designed systems.

Evolution: whales and hippos related? More relationships

by dhw, Wednesday, March 28, 2018, 12:22 (2430 days ago) @ David Turell

DAVID's comment: This study supports my contention that this is a strange and difficult way to evolve with all the new reasons shown.

dhw: This study supports my contention that organisms work out their own ways of coping with the environment, as opposed to being divinely preprogrammed or dabbled with in order to keep life going for the sake of the human brain.

DAVID: So you think land animals convert to aquatic environment with an easy change to their physiology. It is very difficult and requires many new designed systems.

I don’t remember saying it was easy. I find all of nature’s wonders wonderful. Not easy. I find human technology wonderful too, but a long, long way from being easy. It’s truly amazing what intelligent beings can come up with, and I do not believe intelligence is confined to humans. And if God exists, I do not believe it is beyond his powers to endow cell communities with the intelligence to engineer their own ways of coping with the environment.

Evolution: whales and hippos related? More relationships

by David Turell @, Wednesday, March 28, 2018, 15:09 (2430 days ago) @ dhw

DAVID's comment: This study supports my contention that this is a strange and difficult way to evolve with all the new reasons shown.

dhw: This study supports my contention that organisms work out their own ways of coping with the environment, as opposed to being divinely preprogrammed or dabbled with in order to keep life going for the sake of the human brain.

DAVID: So you think land animals convert to aquatic environment with an easy change to their physiology. It is very difficult and requires many new designed systems.

dhw: I don’t remember saying it was easy. I find all of nature’s wonders wonderful. Not easy. I find human technology wonderful too, but a long, long way from being easy. It’s truly amazing what intelligent beings can come up with, and I do not believe intelligence is confined to humans. And if God exists, I do not believe it is beyond his powers to endow cell communities with the intelligence to engineer their own ways of coping with the environment.

I agree with guidelines and help in design.

Evolution: whales and hippos related? More relationships

by dhw, Thursday, March 29, 2018, 09:25 (2430 days ago) @ David Turell

DAVID's comment: This study supports my contention that this is a strange and difficult way to evolve with all the new reasons shown.

dhw: This study supports my contention that organisms work out their own ways of coping with the environment, as opposed to being divinely preprogrammed or dabbled with in order to keep life going for the sake of the human brain.

DAVID: So you think land animals convert to aquatic environment with an easy change to their physiology. It is very difficult and requires many new designed systems.

dhw: I don’t remember saying it was easy. I find all of nature’s wonders wonderful. Not easy. I find human technology wonderful too, but a long, long way from being easy. It’s truly amazing what intelligent beings can come up with, and I do not believe intelligence is confined to humans. And if God exists, I do not believe it is beyond his powers to endow cell communities with the intelligence to engineer their own ways of coping with the environment.

DAVID: I agree with guidelines and help in design.

If you insist that organisms cannot cope with their environment unless they have guidelines and help, you refuse to consider the possibility that your God gave them the autonomous means to cope with their environment. There is no agreement. And among other titbits for you to savour is that your God guided and helped bad bacteria and viruses to do their dirty deeds.

Evolution: whales and hippos related? More relationships

by David Turell @, Thursday, March 29, 2018, 15:18 (2429 days ago) @ dhw

DAVID's comment: This study supports my contention that this is a strange and difficult way to evolve with all the new reasons shown.

dhw: This study supports my contention that organisms work out their own ways of coping with the environment, as opposed to being divinely preprogrammed or dabbled with in order to keep life going for the sake of the human brain.

DAVID: So you think land animals convert to aquatic environment with an easy change to their physiology. It is very difficult and requires many new designed systems.

dhw: I don’t remember saying it was easy. I find all of nature’s wonders wonderful. Not easy. I find human technology wonderful too, but a long, long way from being easy. It’s truly amazing what intelligent beings can come up with, and I do not believe intelligence is confined to humans. And if God exists, I do not believe it is beyond his powers to endow cell communities with the intelligence to engineer their own ways of coping with the environment.

DAVID: I agree with guidelines and help in design.

dhw: If you insist that organisms cannot cope with their environment unless they have guidelines and help, you refuse to consider the possibility that your God gave them the autonomous means to cope with their environment. There is no agreement. And among other titbits for you to savour is that your God guided and helped bad bacteria and viruses to do their dirty deeds.

You are following the religious line that God does only good things. That is certainly not true, as I discussed in my first book. Just understanding how dangerous a place is the universe gives evidence.

Evolution: whales and hippos related? More relationships

by dhw, Friday, March 30, 2018, 12:45 (2428 days ago) @ David Turell

dhw: If you insist that organisms cannot cope with their environment unless they have guidelines and help, you refuse to consider the possibility that your God gave them the autonomous means to cope with their environment. There is no agreement. And among other titbits for you to savour is that your God guided and helped bad bacteria and viruses to do their dirty deeds.

DAVID: You are following the religious line that God does only good things. That is certainly not true, as I discussed in my first book. Just understanding how dangerous a place is the universe gives evidence.

I'm not following any line. If you believe your God deliberately created "bad things", that's up to you. But you are the one who said it raised an issue you can't resolve. :

DAVID: under “bacterial intelligenceAnother non-religious thought is God created a such a strong driving force to produce life on Earth with bacteria that viruses also appeared and in each group nasty ones popped up, that then had to be controlled. Raises the issue of whether God is under total control or just well-intended? I have no way of knowing.

dhw: […] So did he give the nasty bacteria and viruses guidelines, as above, or did he lose control, or maybe even willingly sacrifice control? Now apparently you have no way of knowing. We are making progress.

DAVID: Since it is obvious to me God used evolution to create living forms and He wanted the arrival of humans, He controlled the advance of evolution, but viruses may have been a side effect of the drive for life. They appear to have been present since the very beginning, which also suggests they are a purposeful addition. Evidence is not clear.

Dhw: So your God may have purposefully added bad viruses and bacteria, or he may have lost control, or he may have deliberately sacrificed control to let evolution take its own course (you left out that alternative). Evidence is not clear. You are prepared to consider the possibility that he did not HAVE total control, and yet you are not prepared to consider the possibility that he did not WANT total control.

That is the point at issue, and still you refuse to consider the possibility that he did not WANT total control.

Evolution: whales and hippos related? More relationships

by David Turell @, Friday, March 30, 2018, 14:47 (2428 days ago) @ dhw

DAVID: Since it is obvious to me God used evolution to create living forms and He wanted the arrival of humans, He controlled the advance of evolution, but viruses may have been a side effect of the drive for life. They appear to have been present since the very beginning, which also suggests they are a purposeful addition. Evidence is not clear.

Dhw: So your God may have purposefully added bad viruses and bacteria, or he may have lost control, or he may have deliberately sacrificed control to let evolution take its own course (you left out that alternative). Evidence is not clear. You are prepared to consider the possibility that he did not HAVE total control, and yet you are not prepared to consider the possibility that he did not WANT total control.

dhw: That is the point at issue, and still you refuse to consider the possibility that he did not WANT total control.

I have never thought He was not in full control. My statement of viruses as a 'side effect' certainly suggests the option that His control was not complete, but that has two interpretations: He did mean to lose total control or He didn't mean it. Om balance He demonstrates extraordinary purpose which still support full control.

Evolution: baleen whales once had teeth

by David Turell @, Thursday, May 10, 2018, 20:24 (2387 days ago) @ David Turell

They came from toothed animals and now have baleen filters to use for feeding. they look like a venitian blind set of slats:

https://phys.org/news/2018-05-ancient-skull-early-baleen-whale.html

"Today's baleen whales (Mysticetes) support their massive bodies by filtering huge volumes of small prey from seawater using comb-like baleen in their mouths much like a sieve. But new evidence reported in the journal Current Biology on May 10 based on careful analysis of a 34-million-year-old whale skull from Antarctica—the second-oldest "baleen" whale ever found—suggests that early whales actually didn't have baleen at all. Their mouths were equipped instead with well-developed gums and teeth, which they apparently used to bite large prey.

"'Llanocetus denticrenatus is an ancient relative of our modern gentle giants, like humpback and blue whales," says Felix Marx of the Royal Belgian Institute of Natural Sciences. "Unlike them, however, it had teeth, and probably was a formidable predator."

"'Until recently, it was thought that filter feeding first emerged when whales still had teeth," adds R. Ewan Fordyce at the University of Otago in New Zealand. "Llanocetus shows that this was not the case."

***

"'Instead of a filter, it seems that Llanocetus simply had large gums and, judging from the way its teeth are worn, mainly fed by biting large prey," Marx says. "Even so, it was huge: at a total body length of around 8 meters, it rivals some living whales in size."

"The findings suggest that large gums in whales like Llanocetus gradually became more complex over evolutionary time and, ultimately, gave rise to baleen. That transition probably happened only after the teeth had already been lost and whales had switched from biting to sucking in small prey—as many whales and dolphins now do. Marx and Fordyce suggest that baleen most likely arose as a way to keep such small prey inside the mouth more effectively.

***

"Soft tissues, including baleen, normally rot away, making it difficult to study their evolution. As a result, researchers must rely on indicators preserved on the bones, such as tell-tale grooves or lumps indicating the position of a muscle, or holes for the passage of particular blood vessels and nerves.

"'Llanocetus presents a lucky combination, where the shape of the bones, small features suggesting the course of soft tissues, and tooth wear all combine to tell a clear story," Fordyce says. "Crucially, Llanocetus is also extremely old and lived at the very time when Mysticetes first appeared. As such, it provides a rare window into the earliest phase of their evolution."

"In the new study, Fordyce and Marx found that the broad rostrum of Llanocetus had sharp, widely spaced teeth with marked tooth wear suggesting that they were used to bite and shear prey. As in living Mysticetes, the palate bears many grooves, which have commonly been interpreted as evidence for baleen. However, the researchers showed that those grooves instead converged on the bony tooth sockets, suggesting a peri-dental blood supply to well-developed gums, rather than racks of baleen.

"The findings show that the evolution of filter feeding wasn't as straightforward as previously thought, the researchers say. They'd now like to sort out when filter feeding and baleen first evolved.

"'The giants of our modern ocean may be gentle, but their ancestors were anything but," Marx says. "Llanocetus was both large and a ferocious predator and probably had little in common with how modern whales behave.'"

Comment: Another example of the enormous changes that had to occur to produce today's whales

Evolution: insect explosion much like the Cambrian

by David Turell @, Monday, May 14, 2018, 21:00 (2383 days ago) @ David Turell

There is a million year gap in insect evolution with several types appearing all at once, just like the Cambrian, with no known precursors:

https://www.scientificamerican.com/article/mysterious-insect-fossil-gap-explained/?utm_...

"Yet there are none whatsoever in the known fossil record between 385 million and 325 million years ago. The earliest known insect fossil is a 385-million-year-old wingless creature that looks like a silverfish. But for the next 60 million years there is not so much as a single dragonfly, grasshopper or roach.

"This so-called hexapod gap has long vexed paleontologists, given that insects today are found in almost every imaginable land habitat. One hypothesis suggests that chokingly low oxygen levels kept insect diversity from soaring during the gap and that these creatures proliferated only once the life-giving gas increased.

"But advances in the understanding of atmospheric oxygen levels are challenging that idea, explains Sandra Schachat, a paleoentomologist at Stanford University, who led a recent study that modeled the gas's availability during the hexapod gap. Atmospheric oxygen at the time was much higher than once believed, according to the research.

***

"Schachat and her team combed through fossil information from a public paleontology database and realized there was something special about many of the insect fossils that came after the gap: they had wings. This was likely the trait that helped hexapod diversity take off; winged insects can zip away from predators and get at otherwise unreachable foods such as leaves and other insects. “The gap is simply the tail end of a larger interval in which insects are very rare on the landscape because wings had not yet originated,” Schachat says.

"The mystery now bugging Schachat is how insect wings evolved at all; the earliest flying insects found after the gap seem to have already been very diverse. “The two very first winged insects that we have in the fossil record—they're about as different from each other as you could imagine,” she says. The origins of wings, then, must lie within the gap itself. Lurking somewhere in it, there may be undiscovered fossils that could reveal how insects became the first animals to take to the skies."

Comment: Evolutionary theory now faces three gaps: the Cambrian explosion, the insect gap and the plant bloom, all preceded by time intervals in which no obvious precursor is present. It is very obvious evolution was not a gradual process but very much proceeded in a staccato fashion.

Evolution: arriving on land

by David Turell @, Saturday, June 02, 2018, 18:39 (2364 days ago) @ David Turell

The mass Devonian extinction in the oceans may have driven partially air-breathing animals onto land by using estuaries:

https://phys.org/news/2018-06-stable-isotopes-earliest-tetrapods-euryhaline.html

"A team of researchers from several institutions in France and China has found evidence that some of the earliest creatures to walk on land likely emerged from estuaries or deltas. In their paper published in the journal Nature, the group describes studying certain stable isotopes in fossil specimens to determine the salinity in which they lived.

"Back in 1929, a team of researchers discovered the fossilized remains of Ichthyostega, a tetrapod that was believed to be among the first creatures to walk on land. Since that time, similar types of remains have been found in places like Greenland and China. Study has shown the creatures were able to live both on land and in water—they had four legs, tails for swimming and gills. But until now, scientists reported difficulty in figuring out if the water they came from was fresh or salty (suggesting an ocean existence). In this new effort, the researchers tested 51 ancient fossilized tetrapod bones as a new way to find the answer to this question.

"The team studied sulfur and oxygen isotopes. Seawater has more sulfur-34 compared to sulfur-32 than freshwater. Since both wind up in the bones of creatures that live in water, the researchers studied the ratios in the fossilized bones. They found that the ratios fell closer to seawater. But in studying oxygen isotopes, they found that the creatures were also exposed to freshwater. The evidence suggests that the tetrapods lived part of the time in seawater and part of the time in freshwater. Such places today include estuaries and river deltas. To further bolster their theory, they tested modern creatures that live in such places and found a near match.

"Adding to the story, the fossilized remains have been dated back to approximately 365 million years ago, which was towards the end of the Devonian Period—just prior to the mass extinction of ocean dwelling creatures. The ability to live in both fresh water and sea water, the researchers note, would have given the tetrapods a leg up, so to speak—they would have been able to survive in both types of water and sometimes on land. "


Comment: why did seagoing animals have the ability to breath air in advance of the mass extinction? Good ,luck or God?

Evolution: arriving on land

by dhw, Sunday, June 03, 2018, 09:39 (2364 days ago) @ David Turell

DAVID’s comment: why did seagoing animals have the ability to breath air in advance of the mass extinction? Good luck or God?

Those that had already ventured onto land had already adapted to life out of the water, and those that hadn’t adapted went extinct. Sounds perfectly natural to me.

Evolution: arriving on land

by David Turell @, Sunday, June 03, 2018, 18:46 (2363 days ago) @ dhw

DAVID’s comment: why did seagoing animals have the ability to breath air in advance of the mass extinction? Good luck or God?

dhw: Those that had already ventured onto land had already adapted to life out of the water, and those that hadn’t adapted went extinct. Sounds perfectly natural to me.

You are assuming an advanced adaptation. Either an air bladder or rudimentary lungs must be available to stay awhile on land. How does adaptation occur in such an unfriendly environment? Multiple beneficial mutations are necessary. Not by chance.

Evolution: arriving on land

by dhw, Monday, June 04, 2018, 13:09 (2362 days ago) @ David Turell

DAVID’s comment: why did seagoing animals have the ability to breath air in advance of the mass extinction? Good luck or God?

dhw: Those that had already ventured onto land had already adapted to life out of the water, and those that hadn’t adapted went extinct. Sounds perfectly natural to me.

DAVID: You are assuming an advanced adaptation. Either an air bladder or rudimentary lungs must be available to stay awhile on land. How does adaptation occur in such an unfriendly environment? Multiple beneficial mutations are necessary. Not by chance.

But these adaptations DID occur! And I am not saying they occurred by chance! And I keep repeating that all the cell communities of which organisms are composed must cooperate to enable such adaptations to occur. In most cases, the cell communities are incapable of mastering the “unfriendly environment”, and so they go extinct. According to you, your God either forecast each environmental change 3.8 billion years ago and provided a computer programme for 1% of organisms to switch on and be saved, or he said to himself: “Whoops, looks like there’s a mass extinction on the way. I’d better fiddle with a few critters so they can carry on breathing. Otherwise, life won’t survive until I’m able to design the sapiens brain.” But you have the right to believe what you will.

Evolution: arriving on land

by David Turell @, Monday, June 04, 2018, 14:15 (2362 days ago) @ dhw

DAVID’s comment: why did seagoing animals have the ability to breath air in advance of the mass extinction? Good luck or God?

dhw: Those that had already ventured onto land had already adapted to life out of the water, and those that hadn’t adapted went extinct. Sounds perfectly natural to me.

DAVID: You are assuming an advanced adaptation. Either an air bladder or rudimentary lungs must be available to stay awhile on land. How does adaptation occur in such an unfriendly environment? Multiple beneficial mutations are necessary. Not by chance.

dhw: But these adaptations DID occur! And I am not saying they occurred by chance! And I keep repeating that all the cell communities of which organisms are composed must cooperate to enable such adaptations to occur. In most cases, the cell communities are incapable of mastering the “unfriendly environment”, and so they go extinct. According to you, your God either forecast each environmental change 3.8 billion years ago and provided a computer programme for 1% of organisms to switch on and be saved, or he said to himself: “Whoops, looks like there’s a mass extinction on the way. I’d better fiddle with a few critters so they can carry on breathing. Otherwise, life won’t survive until I’m able to design the sapiens brain.” But you have the right to believe what you will.

Of course adaptations occurred. I have my thoughts and keep debating the one's you have a right to have.

Evolution: storm induced natural selection

by David Turell @, Thursday, July 26, 2018, 21:12 (2310 days ago) @ David Turell

Studies of tree lizards after severe hurricanes shows how variation helps survival:

https://www.sciencedaily.com/releases/2018/07/180726090037.htm

" biologists at Washington University in St. Louis have published a first-of-its-kind look at the physical characteristics of lizards that seem to make the difference between life and death in a hurricane,

***

"The team spent two days collecting just shy of 100 lizards on two separate islands, then measured their forelimbs, hindlimbs and core body lengths, and took pictures of their toe pads.

"The vital statistics of the survivors could be compared with the measurements of the general lizard population that had been collected before the storm.

"'The prediction was that if we saw any changes, they would be changes in the features that help lizards hold on -- they would be related to clinging ability," Donihue said. "For example, the sticky toe pads on their fingers and toes, maybe they would be larger."

"Comparing lizards collected before and after the storm, the researchers found that the survivor populations on both islands had larger toe pads on both their forelimbs and hindlimbs.

"The survivors had proportionately longer fore legs than the initial/pre-hurricane population, while the long bones in between their hips and knees on their back legs (their femurs) were shorter. The survivor population had smaller bodies, too. The observations were statistically significant and consistent at both island sites.

***

"The missing piece of the story is still a behavioral one. Researchers don't know what lizards actually do in the middle of a hurricane. Do they abandon their typical tree perches and go to the ground? Or do they try to seek cover in notches or crevices within the trees? Or do they just hang on?

"A pilot study exploring wind threshold provides some insight into this aspect of the lizard decision-making process.

"When the researchers exposed lizards from the survivor population to hurricane-force winds, the lizards almost uniformly swiveled around their perches to the side opposite from the wind source -- and just held on tight. As wind speeds increased, they lost hold with their hindlimbs first, and were left hanging by their forelimbs.

"It appears that lizards are built to cling, but because of their stance on the perch, their big hindlimbs make them vulnerable to getting pushed off by high winds. This could explain the pattern that survivor lizards have longer forelimbs and shorter hindlimbs after a hurricane, the researchers speculate."

Comment: This is just the result one would expect. We know populations vary and in this case the expected variation survived. A clear picture of the theory of variation and survival..

Evolution: first vertebrate bone structure

by David Turell @, Tuesday, July 31, 2018, 14:53 (2305 days ago) @ David Turell

Earliest form is analyzed and contains collagen like our bone now:

https://cosmosmagazine.com/palaeontology/boning-up-on-early-skeletons

"Palaeontologists have identified the oldest known form of bone, solving a 160-year-old mystery about the evolution of the human skeleton.

"Led by Joseph Keating from the University of Manchester in the UK, a team of researchers used high-energy X-rays to examine the fossilised skeletons of one of our oldest vertebrate relatives: ancient fish called heterostracans.

"The fish skeletons are made of aspidin, a tissue with a structure of crisscrossing tubes. Unlike anything found in modern vertebrates, it was thought to be a precursor to bones as we know them today.

“'For 160 years, scientists have wondered if aspidin is a transitional stage in the evolution of mineralised tissues,” explains Keating.

"Now, new findings published in the journal Nature Ecology and Evolution reveal that the tiny tubes are in fact openings that formerly held bundles of collagen, a type of protein found in skin and – critically – bones.

"The discovery places the origin of the vertebrate skeleton at an earlier date than previously assumed.

“'We show that [aspidin] is, in fact, a type of bone, and that all these tissues must have evolved millions of years earlier,” says co-author Phil Donoghue from the University of Bristol, UK.

Heterostracans are an extinct group of jawless fish that inhabited salt and fresh water habitats during the early to middle Palaeozoic era some 440 to 359 million years ago. In comparison, flowering plants appear in the fossil record around 140 million years ago, and modern humans just 200,000 years ago.

“'These findings change our view on the evolution of the skeleton,” says Donoghue."

Original article abstract:

https://www.nature.com/articles/s41559-018-0624-1

"Bone is the key innovation underpinning the evolution of the vertebrate skeleton, yet its origin is mired by debate over interpretation of the most primitive bone-like tissue, aspidin. This has variously been interpreted as cellular bone, acellular bone, dentine or an intermediate of dentine and bone. The crux of the controversy is the nature of unmineralized spaces pervading the aspidin matrix, which have alternatively been interpreted as having housed cells, cell processes or Sharpey’s fibres. Discriminating between these hypotheses has been hindered by the limits of traditional histological methods. Here, we use synchrotron X-ray tomographic microscopy to reveal the nature of aspidin. We show that the spaces exhibit a linear morphology incompatible with interpretations that they represent voids left by cells or cell processes. Instead, these spaces represent intrinsic collagen fibre bundles that form a scaffold about which mineral was deposited. Aspidin is thus acellular dermal bone. We reject hypotheses that it is a type of dentine, cellular bone or transitional tissue. Our study suggests that the full repertoire of skeletal tissue types was established before the divergence of the earliest known skeletonizing vertebrates, indicating that the corresponding cell types evolved rapidly following the divergence of cyclostomes and gnathostomes."

Comment: Again punctuated evolution. A needed advance appears full blown. Only design fits.

Evolution: hummingbird evolution has gaps

by David Turell @, Tuesday, July 31, 2018, 18:35 (2305 days ago) @ David Turell

Now they are only in the Western Hemisphere, but they originated in the Eastern:

https://www.audubon.org/news/the-origins-hummingbirds-are-still-major-mystery

"Hummingbirds come in a jewel-like assortment of colors and are so dexterous, they can hover still for seconds and fly backward. They also have one of the most diverse avian families in the world, boasting about 350 known species across North and South America. Sunbirds, the prime nectar-feeding birds of the Old World, have fewer than 150.

"But once upon a time, tens of millions of years ago, hummingbirds did zip around the hills and forests of Europe. According to Jim McGuire, it all started about 42 million years ago, when hummingbirds broke away from the swifts, their closest living relatives. McGuire, an integrative biologist at University of California Berkeley, calculated this date by examining genetic variation across living hummingbird species and using that information to piece together an approximate evolutionary timeline.

"The plot, McGuire says, thickens at the 30- to 35-million-year mark. The oldest hummingbird fossils we’ve discovered come from this period—but they aren’t American. Instead, they were unearthed in southeastern Germany.

***

"Modern hummingbirds evolved in the Americas around 22 million years ago, according to McGuire’s estimates, but we don’t have any fossils from the West that are older than 10,000 years ago. “We basically have no fossil material we can use” in the New World to figure out how to connect the dots, says McGuire.

"Modern hummingbirds evolved in the Americas around 22 million years ago, according to McGuire’s estimates, but we don’t have any fossils from the West that are older than 10,000 years ago. “We basically have no fossil material we can use” in the New World to figure out how to connect the dots, says McGuire.

***

"Until scientists discover more fossils on both sides of the Atlantic, the hummingbird mystery is a tough one to solve. But what we do know about hummingbird evolution so far is fascinating. “Hummingbirds can be very resource-specific in terms of their needs; they evolve relatively quickly into actual separate species that look similar and have different needs and genetics,” says Geoff LeBaron, the Christmas Bird Count director for Audubon."

Comment: They had to migrate somehow.

Evolution: storm induced natural selection

by David Turell @, Monday, April 27, 2020, 21:28 (1669 days ago) @ David Turell

A new study supports the relationship of big lizard pads and Caribbean hurricanes which we mentioned before:

https://phys.org/news/2020-04-hurricanes-evolution-island-lizards.html

"Lizard groups that more frequently experience hurricanes evolve larger toepads than those that experience relatively fewer hurricanes, according to a new analysis that spans 12 island populations of Anolis sagrei lizards and, separately, 188 Anolis species with ranges from Florida to Brazil.

"Scientists have known for a long time that lizards on the Caribbean islands have larger toepads than those on the mainland. But this physical difference has never been definitively linked to an evolutionary response to hurricanes. Hurricanes happen so infrequently that researchers used to think their effects would be erased by natural selection favoring normal conditions.

"'What we found is that hurricanes actually do have evolutionary effects on lizards that span both geographic and phylogenetic scales," said Colin Donihue, a postdoctoral fellow in biology in Arts & Sciences at Washington University. "We showed that hurricanes affect a single anole species in Turks & Caicos, and those effects are likely inherited to the next generation—suggesting an evolutionary change. The effects are paralleled across 12 island populations of a different anole species, and ultimately can be detected across an entire genus of very distantly related anole lizards."

***

"'Correcting for things like differences in body size, we found that island populations that had been hit by hurricanes more [frequently] had larger toepads," Donihue said. "Hurricanes seem to be having some sort of additive effect on the evolution of these lizards—that the more hurricanes you have, the larger toepads you have, on average."

"'Toepads might be a key trait for helping lizards hold on tight to the vegetation during storms," he said. "But there's probably a tradeoff between the traits that make you really good at surviving a hurricane and the traits that make you really good at being a lizard day in, day out."

Comment: It seems like a good theory. Bigger pads will hold on better in high wind speed and natural variation will allow those with bigger pads to survive.

Evolution: whales defy explanation

by David Turell @, Wednesday, August 15, 2018, 22:32 (2290 days ago) @ David Turell

A neat view parallel to my feelings:

https://evolutionnews.org/2018/08/inexplicable-species-and-the-theory-of-evolution/

"Many modern authorities continue to use fossils as proof of evolution, chronologically lining up those which appear similar, yet the gaps have only grown more glaring with time. We now delve into the cellular level comparing chemical processes, electrical charges, and genetic differences. It seems to be a secret, but researchers know that it would take millions of internal changes for dinosaurs to evolve into birds, flat plants into trees, fish into amphibians. Note there are no half-fish/half-salamanders or one-third monkey/two-thirds humans, ever.

"Upon close inspection, the absence of transitions (smaller steps) is striking. We should be up to our collective elbows with transitional species that once came about by trial and error, and failed to survive. Not so. Even for whales, the largest animal alive. We’ve been told repeatedly that transitional forms will eventually be found, but that hasn’t happened and the problems are steadily increasing in our awareness. Saying that two fossils with similar appearances, yet found thousands of miles apart, are related, begs the question.

"Some whales can grow up to 100 feet long and weigh 200 tons. The rib cage of a blue whale is large enough to accommodate a minivan or small truck. Their hearts are the size of a Volkswagen Beetle. Every aspect is so massive. A few fossilized bones from their putative predecessors have been found. But the story is still mysterious, because of the changes required.

***

" Some modern paleontologists say the whale’s ancestor must be the hippopotamus. Maybe because they are mammals and linger in the water most of their lives? But, otherwise they are strikingly (impossibly) different. Other coastal animals, that are now extinct, are also cited, but none of them could survive a day or two at sea. Of interest, the whale’s tail moves up and down, not sideways like fish. And, whales never had scales.

"No one knows how blow holes came about, certainly not by small successive steps, or how the internal lungs became connected up to these holes in a way that prevents drowning. Or, how a massive communication center, found in their heads, came about. Or, how the ability to depressurize body segments during deep dives evolved. Calves are born tail first (they cannot go head first in case the process is too slow) and these newborns must rise to the surface immediately for air or else they will drown. The ability to swim must be present from the beginning. Trial and error would never have worked."

Comment: Exactly! And yet dhw tries to claim the animals entered the water and adapted, just to follow a food supply!

Evolution: whales defy explanation

by dhw, Thursday, August 16, 2018, 11:48 (2289 days ago) @ David Turell

DAVID: A neat view parallel to my feelings:
https://evolutionnews.org/2018/08/inexplicable-species-and-the-theory-of-evolution/

Just a couple of quotes to get the general gist:

"Many modern authorities continue to use fossils as proof of evolution, chronologically lining up those which appear similar, yet the gaps have only grown more glaring with time. […] researchers know that it would take millions of internal changes for dinosaurs to evolve into birds, flat plants into trees, fish into amphibians.”
“A few fossilized bones from their putative predecessors have been found. But the story is still mysterious, because of the changes required.”

DAVID’s comment: Exactly! And yet dhw tries to claim the animals entered the water and adapted, just to follow a food supply!

Yes, I consider the theory that the animals had a good reason for entering the water, and then underwent different stages of adaptation, to be more convincing than your theory that your God either preprogrammed each stage 3.8 billion years ago, or fiddled with the pre-whales’ anatomy before sending them into the water, and then went on fiddling with their anatomy at the different stages you yourself have agreed took place. (Or are you now rejecting this example of common descent?) Perhaps you would just confirm that these are your two possible theories, and while you’re at it give us your own explanation as to WHY your God did it all in stages.

The article concludes:

Whales are not the only misfit to smooth transitions, just the largest. The number of exceptions may actually be equal to the number of species on this planet. Standouts are kangaroos, woodpeckers, platypuses, giraffes, butterflies, octopuses, skunks, bombardier beetles, the red tide, dolphins, fireflies, tardigrades, sloths, and all micro-organisms. Maybe viruses, too.
Something besides unguided evolution is going on. In actuality, all living organisms are likely exceptions. Just breeding a horse into a faster horse doesn’t eventually change it into something fast like a cheetah. It’s simply a faster horse. The same goes for pet dogs to guard dogs. It’s true, natural selection does happen in a variety of situations, but it doesn’t change a species into another.
An incomprehensibly intelligent engineer and designer must be responsible.

If all living organisms are likely exceptions, the author is rejecting common descent altogether. And yet there is sufficient evidence to have convinced you that common descent is true, so in what way is his "neat view" parallel to your feelings? He certainly hasn’t specified that he believes in your 3.8 billion-year-old computer programmes or even your dabbling. He merely falls back on the generalisation that speciation requires design – and both of us agree. NOBODY knows how speciation took place, and that’s why there are different theories. All three of us reject random mutations. You propose divine preprogramming and/or dabbling. I propose cellular intelligence (possibly designed by your God). The author doesn’t offer us any theory at all. So where does that leave us? Since there is no consensus, “the story is still mysterious”, and if there weren’t gaps in all the theories, one of them would be fact and not theory.

Evolution: whales defy explanation

by Balance_Maintained @, U.S.A., Thursday, August 16, 2018, 12:41 (2289 days ago) @ dhw

DHW: If all living organisms are likely exceptions, the author is rejecting common descent altogether. And yet there is sufficient evidence to have convinced you that common descent is true, so in what way is his "neat view" parallel to your feelings? He certainly hasn’t specified that he believes in your 3.8 billion-year-old computer programmes or even your dabbling. He merely falls back on the generalisation that speciation requires design – and both of us agree. NOBODY knows how speciation took place, and that’s why there are different theories. All three of us reject random mutations. You propose divine preprogramming and/or dabbling. I propose cellular intelligence (possibly designed by your God). The author doesn’t offer us any theory at all. So where does that leave us? Since there is no consensus, “the story is still mysterious”, and if there weren’t gaps in all the theories, one of them would be fact and not theory.

Note the authors comment on the lack of transitional fossils, and the implications for the two theories you mention here.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution: whales defy explanation

by David Turell @, Thursday, August 16, 2018, 14:22 (2289 days ago) @ Balance_Maintained

DHW: If all living organisms are likely exceptions, the author is rejecting common descent altogether. And yet there is sufficient evidence to have convinced you that common descent is true, so in what way is his "neat view" parallel to your feelings? He certainly hasn’t specified that he believes in your 3.8 billion-year-old computer programmes or even your dabbling. He merely falls back on the generalisation that speciation requires design – and both of us agree. NOBODY knows how speciation took place, and that’s why there are different theories. All three of us reject random mutations. You propose divine preprogramming and/or dabbling. I propose cellular intelligence (possibly designed by your God). The author doesn’t offer us any theory at all. So where does that leave us? Since there is no consensus, “the story is still mysterious”, and if there weren’t gaps in all the theories, one of them would be fact and not theory.


Tony: Note the authors comment on the lack of transitional fossils, and the implications for the two theories you mention here.

If whales require design, there must be a designing mind to foresee all the reasons for the complex changes. On-board cells couldn't possibly have reasonably inventive ideas.

Evolution: whales defy explanation

by David Turell @, Thursday, August 16, 2018, 17:49 (2289 days ago) @ dhw

DAVID’s comment: Exactly! And yet dhw tries to claim the animals entered the water and adapted, just to follow a food supply!

dhw: Yes, I consider the theory that the animals had a good reason for entering the water, and then underwent different stages of adaptation, to be more convincing than your theory that your God either preprogrammed each stage 3.8 billion years ago, or fiddled with the pre-whales’ anatomy before sending them into the water, and then went on fiddling with their anatomy at the different stages you yourself have agreed took place. (Or are you now rejecting this example of common descent?) Perhaps you would just confirm that these are your two possible theories, and while you’re at it give us your own explanation as to WHY your God did it all in stages.

Common descent dictates the whales came from some predecessor. We are not sure which one because there are no intermediate forms as the article notes. Your faith in cellular intelligence able to design complex stages of whale descent more than equals any faith in a designing mind.


dhw: The article concludes:

Whales are not the only misfit to smooth transitions, just the largest. The number of exceptions may actually be equal to the number of species on this planet. Standouts are kangaroos, woodpeckers, platypuses, giraffes, butterflies, octopuses, skunks, bombardier beetles, the red tide, dolphins, fireflies, tardigrades, sloths, and all micro-organisms. Maybe viruses, too.
Something besides unguided evolution is going on. In actuality, all living organisms are likely exceptions. Just breeding a horse into a faster horse doesn’t eventually change it into something fast like a cheetah. It’s simply a faster horse. The same goes for pet dogs to guard dogs. It’s true, natural selection does happen in a variety of situations, but it doesn’t change a species into another.
An incomprehensibly intelligent engineer and designer must be responsible.

If all living organisms are likely exceptions, the author is rejecting common descent altogether. And yet there is sufficient evidence to have convinced you that common descent is true, so in what way is his "neat view" parallel to your feelings? He certainly hasn’t specified that he believes in your 3.8 billion-year-old computer programmes or even your dabbling. He merely falls back on the generalisation that speciation requires design – and both of us agree. NOBODY knows how speciation took place, and that’s why there are different theories. All three of us reject random mutations. You propose divine preprogramming and/or dabbling. I propose cellular intelligence (possibly designed by your God). The author doesn’t offer us any theory at all. So where does that leave us? Since there is no consensus, “the story is still mysterious”, and if there weren’t gaps in all the theories, one of them would be fact and not theory.

This is just the reason I've always bring up whales. They defy any naturally-based theory.

Evolution: corn plant pest adaptation

by David Turell @, Thursday, August 16, 2018, 19:46 (2289 days ago) @ David Turell

It uses the same iron protein complex as the plant:

https://phys.org/news/2018-08-herbivore-hijacks-nutrient-uptake-strategy.html

"Christelle Robert and Matthias Erb from the University of Bern had shown in the past that the corn rootworm is resistant to the most important class of maize defense metabolites, the benzoxazinoids. Robert demonstrated that rootworm larvae are even attracted by benzoxazinoids and can use these substances for their own defense against beneficial nematodes. However, until now, it was unclear which benzoxazinoids attract the rootworm. A combination of genetics, chemistry and behavioral ecology has now enabled the scientists to solve this puzzle: Rootworm larvae recognize specific iron complexes that are formed at the root surface when benzoxazinoids bind to iron.

***

"The roots of young maize plants release benzoxazinoids, which bind to iron and form complexes in the soil. The researchers found that these complexes increase iron availability for maize plants and thus improve plant growth. But the rootworm uses these exact same iron complexes too—rootworm larvae use the benzoxazinoid-iron complexes to guide them to the nutrient-rich crown roots of maize plants. At the same time, they ingest these complexes for their own needs.

"'The corn rootworm has evolved a clever strategy to exploit its host plant's ability to make iron biologically available. Tragically, this strategy enables the insect to severely damage maize plants and thereby cause massive crop failure," says Christelle Robert. "This behavior also poses a dilemma for plant breeders. In order to get rid of rootworms, they would have to reduce the release of benzoxazinoids in the roots. However, this would also undermine the plants' ability to absorb iron.

***

"The results of the study highlight the dilemma faced by plants when an herbivore breaks through and evolves tolerance to a defense. "Since benzoxazinoids function both in herbivore defense and nutrient uptake, it is difficult for the plant to immediately stop producing a defense compound that has so many other important functions.

***

" The fact that the Western corn rootworm is able to perceive iron complexes and to adjust its dietary behavior accordingly is also relevant for the understanding of food chains. "Many important trace elements are bound to organic molecules in nature. We therefore expect that other higher organisms also have the ability to perceive biologically available forms of trace elements and to ingest them to improve their nutrient balance," says Matthias Erb. "The Western corn rootworm is a frustrating, yet highly fascinating pest that has just taught us a new trick of nature.'"

Comment: This is an amazing adaptation the larvae worked out.

Evolution: corn plant pest adaptation

by Balance_Maintained @, U.S.A., Friday, August 17, 2018, 01:24 (2289 days ago) @ David Turell

It uses the same iron protein complex as the plant:

https://phys.org/news/2018-08-herbivore-hijacks-nutrient-uptake-strategy.html

"Christelle Robert and Matthias Erb from the University of Bern had shown in the past that the corn rootworm is resistant to the most important class of maize defense metabolites, the benzoxazinoids. Robert demonstrated that rootworm larvae are even attracted by benzoxazinoids and can use these substances for their own defense against beneficial nematodes. However, until now, it was unclear which benzoxazinoids attract the rootworm. A combination of genetics, chemistry and behavioral ecology has now enabled the scientists to solve this puzzle: Rootworm larvae recognize specific iron complexes that are formed at the root surface when benzoxazinoids bind to iron.

***

"The roots of young maize plants release benzoxazinoids, which bind to iron and form complexes in the soil. The researchers found that these complexes increase iron availability for maize plants and thus improve plant growth. But the rootworm uses these exact same iron complexes too—rootworm larvae use the benzoxazinoid-iron complexes to guide them to the nutrient-rich crown roots of maize plants. At the same time, they ingest these complexes for their own needs.

"'The corn rootworm has evolved a clever strategy to exploit its host plant's ability to make iron biologically available. Tragically, this strategy enables the insect to severely damage maize plants and thereby cause massive crop failure," says Christelle Robert. "This behavior also poses a dilemma for plant breeders. In order to get rid of rootworms, they would have to reduce the release of benzoxazinoids in the roots. However, this would also undermine the plants' ability to absorb iron.

***

"The results of the study highlight the dilemma faced by plants when an herbivore breaks through and evolves tolerance to a defense. "Since benzoxazinoids function both in herbivore defense and nutrient uptake, it is difficult for the plant to immediately stop producing a defense compound that has so many other important functions.

***

" The fact that the Western corn rootworm is able to perceive iron complexes and to adjust its dietary behavior accordingly is also relevant for the understanding of food chains. "Many important trace elements are bound to organic molecules in nature. We therefore expect that other higher organisms also have the ability to perceive biologically available forms of trace elements and to ingest them to improve their nutrient balance," says Matthias Erb. "The Western corn rootworm is a frustrating, yet highly fascinating pest that has just taught us a new trick of nature.'"

David: Comment: This is an amazing adaptation the larvae worked out.

I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution: corn plant pest adaptation

by David Turell @, Friday, August 17, 2018, 15:15 (2288 days ago) @ Balance_Maintained

" The fact that the Western corn rootworm is able to perceive iron complexes and to adjust its dietary behavior accordingly is also relevant for the understanding of food chains. "Many important trace elements are bound to organic molecules in nature. We therefore expect that other higher organisms also have the ability to perceive biologically available forms of trace elements and to ingest them to improve their nutrient balance," says Matthias Erb. "The Western corn rootworm is a frustrating, yet highly fascinating pest that has just taught us a new trick of nature.'"

David: Comment: This is an amazing adaptation the larvae worked out.


Tony: I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.

Ah, programming! All organisms need trace metals. Our hemoglobin with iron comes to mind. A nd the needs should be common.

Evolution: corn plant pest adaptation

by Balance_Maintained @, U.S.A., Friday, August 17, 2018, 18:44 (2288 days ago) @ David Turell

" The fact that the Western corn rootworm is able to perceive iron complexes and to adjust its dietary behavior accordingly is also relevant for the understanding of food chains. "Many important trace elements are bound to organic molecules in nature. We therefore expect that other higher organisms also have the ability to perceive biologically available forms of trace elements and to ingest them to improve their nutrient balance," says Matthias Erb. "The Western corn rootworm is a frustrating, yet highly fascinating pest that has just taught us a new trick of nature.'"

David: Comment: This is an amazing adaptation the larvae worked out.


Tony: I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.


David: Ah, programming! All organisms need trace metals. Our hemoglobin with iron comes to mind. A nd the needs should be common.

There should also be common ways to find/detect those nutrients, as well as signalling paths that let us know we are deficient(thus triggering cravings)

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution: corn plant pest adaptation

by David Turell @, Friday, August 17, 2018, 19:31 (2288 days ago) @ Balance_Maintained

David: Comment: This is an amazing adaptation the larvae worked out.


Tony: I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.


David: Ah, programming! All organisms need trace metals. Our hemoglobin with iron comes to mind. A nd the needs should be common.

Tony: There should also be common ways to find/detect those nutrients, as well as signalling paths that let us know we are deficient(thus triggering cravings)

As for humans with iron-deficiency anemia they know they have lost energy, but they need a doctor to tell them to take iron. Less complex organisms must have recognition programs or they might not survive.

Evolution: corn plant pest adaptation

by Balance_Maintained @, U.S.A., Friday, August 17, 2018, 21:18 (2288 days ago) @ David Turell

David: Comment: This is an amazing adaptation the larvae worked out.


Tony: I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.


David: Ah, programming! All organisms need trace metals. Our hemoglobin with iron comes to mind. A nd the needs should be common.

Tony: There should also be common ways to find/detect those nutrients, as well as signalling paths that let us know we are deficient(thus triggering cravings)


David: As for humans with iron-deficiency anemia they know they have lost energy, but they need a doctor to tell them to take iron. Less complex organisms must have recognition programs or they might not survive.

Then why do so many anemics crunch ice, or sensitivity to cooler temperatures? Not conciously recognizing the signals is not evidence of abscence.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution: corn plant pest adaptation

by David Turell @, Friday, August 17, 2018, 21:58 (2288 days ago) @ Balance_Maintained

David: Comment: This is an amazing adaptation the larvae worked out.


Tony: I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.


David: Ah, programming! All organisms need trace metals. Our hemoglobin with iron comes to mind. A nd the needs should be common.

Tony: There should also be common ways to find/detect those nutrients, as well as signalling paths that let us know we are deficient(thus triggering cravings)


David: As for humans with iron-deficiency anemia they know they have lost energy, but they need a doctor to tell them to take iron. Less complex organisms must have recognition programs or they might not survive.


Tony: then why do so many anemics crunch ice, or sensitivity to cooler temperatures? Not conciously recognizing the signals is not evidence of abscence.

Never heard of ice crunching, but think blood makes it harder to keep warm.

Evolution: corn plant pest adaptation

by Balance_Maintained @, U.S.A., Saturday, August 18, 2018, 06:16 (2288 days ago) @ David Turell

David: Comment: This is an amazing adaptation the larvae worked out.


Tony: I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.


David: Ah, programming! All organisms need trace metals. Our hemoglobin with iron comes to mind. A nd the needs should be common.

Tony: There should also be common ways to find/detect those nutrients, as well as signalling paths that let us know we are deficient(thus triggering cravings)


David: As for humans with iron-deficiency anemia they know they have lost energy, but they need a doctor to tell them to take iron. Less complex organisms must have recognition programs or they might not survive.


Tony: then why do so many anemics crunch ice, or sensitivity to cooler temperatures? Not conciously recognizing the signals is not evidence of abscence.


David: Never heard of ice crunching, but think blood makes it harder to keep warm.

Pica

Craving and chewing ice (pagophagia) is often associated with iron deficiency, with or without anemia, although the reason is unclear. At least one study indicates that ice chewing might increase alertness in people with iron deficiency anemia.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution: corn plant pest adaptation

by David Turell @, Saturday, August 18, 2018, 15:04 (2287 days ago) @ Balance_Maintained

David: Comment: This is an amazing adaptation the larvae worked out.


Tony: I am not so sure this is an 'adaptation'. If you consider that the root worm was programmed this way initially, but that corn was not really grown the way that we grow it today (in huge....huge..unbelievably huge) farms, then the most likely scenario is that this pre-existing trait is pestulant because the amount of iron released from the corn (and subsequently replenished by farmers through fertilizer) has led to a population control problem.

Why would we find it surprising that animals are programmed for certain nutrient needs, and the methods of obtaining/tracking them? No one thinks it odd that mammals smell.


David: Ah, programming! All organisms need trace metals. Our hemoglobin with iron comes to mind. A nd the needs should be common.

Tony: There should also be common ways to find/detect those nutrients, as well as signalling paths that let us know we are deficient(thus triggering cravings)


David: As for humans with iron-deficiency anemia they know they have lost energy, but they need a doctor to tell them to take iron. Less complex organisms must have recognition programs or they might not survive.


Tony: then why do so many anemics crunch ice, or sensitivity to cooler temperatures? Not conciously recognizing the signals is not evidence of abscence.


David: Never heard of ice crunching, but thin blood makes it harder to keep warm.


Tony: Pica

Craving and chewing ice (pagophagia) is often associated with iron deficiency, with or without anemia, although the reason is unclear. At least one study indicates that ice chewing might increase alertness in people with iron deficiency anemia.

Learning all the time. Great trivia.

Evolution: whales defy explanation

by dhw, Friday, August 17, 2018, 10:58 (2288 days ago) @ David Turell

dhw: NOBODY knows how speciation took place, and that’s why there are different theories. All three of us reject random mutations. You propose divine preprogramming and/or dabbling. I propose cellular intelligence (possibly designed by your God). The author doesn’t offer us any theory at all. So where does that leave us? Since there is no consensus, “the story is still mysterious”, and if there weren’t gaps in all the theories, one of them would be fact and not theory.

DAVID: This is just the reason I've always bring up whales. They defy any naturally-based theory.

They also defy any supernaturally-based theory, as does the whole of evolution. You need faith to believe in any of the explanations offered.

TONY: Note the authors comment on the lack of transitional fossils, and the implications for the two theories you mention here.

There are several transitional fossils. Here is a website that traces the history:
The evolution of whales - Understanding Evolution
www.evolution.berkeley.edu/evolibrary/article/evograms_03

But of course that doesn’t explain what mechanism enables organisms to undergo such radical changes. Starting out from the basic premise of design, which is common to the two theories I have mentioned, please tell us your own theory.

DAVID: If whales require design, there must be a designing mind to foresee all the reasons for the complex changes. On-board cells couldn't possibly have reasonably inventive ideas.

Once again you insist that all the changes had to be foreseen, with your God initially fiddling with the anatomy before the pre-whale even entered the water. (Presumably the subsequent fiddles came after the pre-whale had entered the water. Did he realize bit by bit that his design could be improved?) My proposal is that the pre-whale had good reason to enter the water (food), and all the subsequent changes were made to improve its adaptation to aquatic life. Not foreseeing problems but reacting to problems.

DAVID: Your faith in cellular intelligence able to design complex stages of whale descent more than equals any faith in a designing mind.

It is a hypothesis not a faith, but if I had faith in a designing mind, I would have faith that the designing mind is perfectly capable of designing other designing minds in the form of cells/cell communities. We know that these adapt.*** The idea that they may also invent provides an explanation for the higgledy-piggledy history of life as we know it. The idea that your God personally preprogrammed every undabbled innovation, lifestyle and natural wonder 3.8 billion years ago seems to me less likely as an explanation of that higgledy-piggledy history.

***Under “CORN PLANT PEST ADAPTATION
DAVID’s comment: This is an amazing adaptation the larvae worked out.

Yes indeed. It is amazing how even little larvae can work out their own ways to improve their chances of survival.

Evolution: whales defy explanation

by David Turell @, Friday, August 17, 2018, 15:26 (2288 days ago) @ dhw

DAVID: This is just the reason I've always bring up whales. They defy any naturally-based theory.

They also defy any supernaturally-based theory, as does the whole of evolution. You need faith to believe in any of the explanations offered.

TONY: Note the authors comment on the lack of transitional fossils, and the implications for the two theories you mention here.

dhw: There are several transitional fossils. Here is a website that traces the history:
The evolution of whales - Understanding Evolution
www.evolution.berkeley.edu/evolibrary/article/evograms_03

But of course that doesn’t explain what mechanism enables organisms to undergo such radical changes. Starting out from the basic premise of design, which is common to the two theories I have mentioned, please tell us your own theory.

Thank you. 'Radical change' is the issue, and the requirement for design! The first orbiting humans were in a capsule that required much consideration aforethought before it was created. Note that whale changes are certainly a biological equivalent.


DAVID: If whales require design, there must be a designing mind to foresee all the reasons for the complex changes. On-board cells couldn't possibly have reasonably inventive ideas.

dhw: Once again you insist that all the changes had to be foreseen, with your God initially fiddling with the anatomy before the pre-whale even entered the water. (Presumably the subsequent fiddles came after the pre-whale had entered the water. Did he realize bit by bit that his design could be improved?) My proposal is that the pre-whale had good reason to enter the water (food), and all the subsequent changes were made to improve its adaptation to aquatic life. Not foreseeing problems but reacting to problems.

But the fossil show giant changes, not explained by your just-so story.


DAVID: Your faith in cellular intelligence able to design complex stages of whale descent more than equals any faith in a designing mind.

dhw: It is a hypothesis not a faith, but if I had faith in a designing mind, I would have faith that the designing mind is perfectly capable of designing other designing minds in the form of cells/cell communities. We know that these adapt.*** The idea that they may also invent provides an explanation for the higgledy-piggledy history of life as we know it. The idea that your God personally preprogrammed every undabbled innovation, lifestyle and natural wonder 3.8 billion years ago seems to me less likely as an explanation of that higgledy-piggledy history.

You stick to it just as if it were faith.


***Under “CORN PLANT PEST ADAPTATION
DAVID’s comment: This is an amazing adaptation the larvae worked out.

dhw: Yes indeed. It is amazing how even little larvae can work out their own ways to improve their chances of survival.

Note Tony's programming comment.

Evolution: whales defy explanation

by dhw, Saturday, August 18, 2018, 07:27 (2288 days ago) @ David Turell

TONY: Note the authors comment on the lack of transitional fossils, and the implications for the two theories you mention here.

dhw: There are several transitional fossils. Here is a website that traces the history:
The evolution of whales - Understanding Evolution
www.evolution.berkeley.edu/evolibrary/article/evograms_03
But of course that doesn’t explain what mechanism enables organisms to undergo such radical changes. Starting out from the basic premise of design, which is common to the two theories I have mentioned, please tell us your own theory.

DAVID: Thank you. 'Radical change' is the issue, and the requirement for design! The first orbiting humans were in a capsule that required much consideration aforethought before it was created. Note that whale changes are certainly a biological equivalent.

I keep saying radical change is the issue, and I keep acknowledging the need for design, but not the kind of preprogrammed or dabbled design you propose. I suggest that if your God can invent a mechanism for human invention, he could also invent a mechanism for invention by other life forms.

DAVID: If whales require design, there must be a designing mind to foresee all the reasons for the complex changes. On-board cells couldn't possibly have reasonably inventive ideas.

dhw: Once again you insist that all the changes had to be foreseen, with your God initially fiddling with the anatomy before the pre-whale even entered the water. (Presumably the subsequent fiddles came after the pre-whale had entered the water. Did he realize bit by bit that his design could be improved?) My proposal is that the pre-whale had good reason to enter the water (food), and all the subsequent changes were made to improve its adaptation to aquatic life. Not foreseeing problems but reacting to problems.

DAVID: But the fossil show giant changes, not explained by your just-so story.

There is as yet no universally accepted story of any kind to explain giant changes, but that is no answer to my point that my hypothesis is based mainly on responses to environmental conditions and therefore NOT on foresight. I note that you do not answer my question concerning your God’s “foresight” in relation to the different stages of pre-whale evolution. Dismissing my hypothesis as a just-so story is on the same level as dismissing God as a delusion. Not a level I would wish to stay on.

***Under “CORN PLANT PEST ADAPTATION
DAVID’s comment: This is an amazing adaptation the larvae worked out.

dhw: Yes indeed. It is amazing how even little larvae can work out their own ways to improve their chances of survival.

DAVID: Note Tony's programming comment.

I preferred your own “the larvae worked it out” comment. Delighted to have you on my side at last.;-)

Evolution: whales defy explanation

by David Turell @, Saturday, August 18, 2018, 15:25 (2287 days ago) @ dhw

DAVID: But the fossil show giant changes, not explained by your just-so story.

dhw: There is as yet no universally accepted story of any kind to explain giant changes, but that is no answer to my point that my hypothesis is based mainly on responses to environmental conditions and therefore NOT on foresight. I note that you do not answer my question concerning your God’s “foresight” in relation to the different stages of pre-whale evolution. Dismissing my hypothesis as a just-so story is on the same level as dismissing God as a delusion. Not a level I would wish to stay on.

Of course environmental changes will at times be a great influence. The gaps in the fossil story, if real, strongly suggest design, because of the complexity of the required changes. Your theory is highly suggestive of small stepwise alterations leading to the new forms


***Under “CORN PLANT PEST ADAPTATION
DAVID’s comment: This is an amazing adaptation the larvae worked out.

dhw: Yes indeed. It is amazing how even little larvae can work out their own ways to improve their chances of survival.

DAVID: Note Tony's programming comment.

dhw: I preferred your own “the larvae worked it out” comment. Delighted to have you on my side at last.;-)

There may always be a designer.

Evolution: whales defy explanation

by dhw, Sunday, August 19, 2018, 10:39 (2286 days ago) @ David Turell

DAVID: But the fossil show giant changes, not explained by your just-so story.

dhw: There is as yet no universally accepted story of any kind to explain giant changes, but that is no answer to my point that my hypothesis is based mainly on responses to environmental conditions and therefore NOT on foresight. I note that you do not answer my question concerning your God’s “foresight” in relation to the different stages of pre-whale evolution. Dismissing my hypothesis as a just-so story is on the same level as dismissing God as a delusion. Not a level I would wish to stay on.

DAVID: Of course environmental changes will at times be a great influence. The gaps in the fossil story, if real, strongly suggest design, because of the complexity of the required changes. Your theory is highly suggestive of small stepwise alterations leading to the new forms.

Then perhaps you can agree that environmental influences may have occasioned the many changes to the pre-whale – as opposed to your God having prepared the pre-whale for entry into the water. I have no idea how many small steps were needed before any innovation reached its current form, and nor have you. Are you proposing that your God reached down and summoned all the then existing pre-whales to come ashore so that he could equip each of them with a blowhole? All part of his “foresight”, though he didn’t think of it when he first got them to enter the water?

Evolution: more gaps in foraminifera

by David Turell @, Wednesday, October 17, 2018, 22:10 (2227 days ago) @ dhw

Like whales other lines are full of gaps:

https://www.sciencedirect.com/science/article/pii/S2589004218301482

"The fossil record provides empirical patterns of morphological change through time and is central to the study of the tempo and mode of evolution. Here we apply likelihood-based time-series analyses to the near-continuous fossil record of Neogene planktonic foraminifera and reveal a morphological shift along the Truncorotalia lineage. Based on a geometric morphometric dataset of 1,459 specimens, spanning 5.9–4.5 Ma, we recover a shift in the mode of evolution from a disparate latest Miocene morphospace to a highly constrained early Pliocene morphospace. Our recovered dynamics are consistent with those stipulated by Simpson's quantum evolution and Eldredge-Gould's punctuated equilibria and supports previous suppositions that even within a single lineage, evolutionary dynamics require a multi-parameter model framework to describe. We show that foraminiferal lineages are not necessarily gradual and can experience significant and rapid transitions along their evolutionary trajectories and reaffirm the utility of multivariate datasets for their future research.

"Conclusion
We documented and assessed the evolutionary transition along Truncorotalia across the Miocene/Pliocene boundary using semilandmark morphometrics and time-series analyses. A potentially localized and rapid evolutionary shift between two end members of Truncorotalia, T. juanai and T. crassaformis, at 5.1–5.2 Ma reveals that the evolutionary dynamics were not gradual and rejects the notion of an intermediate form along the lineage (contraArnold, 1983, Cifelli and Scott, 1986). The transition between end members involved a major reduction in morphological diversity and a transition to a more constrained morphological stock. Furthermore, likelihood-based time-series analyses strengthen this hypothesis through rejection of simple gradual or random modes of evolution, in favor of shift models, which can be interpreted within the context of both Simpson's QE and Eldredge and Gould's PE. Through this study we hope to augment research into tempo and mode in planktonic foraminifera and highlight certain expectations of Simpson's theory, which are not explicit to PE. We envision that application of these methods by planktonic foraminiferal researchers will garnish further explicit tests of tempo and mode in this iconic fossil group."

Comment: Very complex article, but it shows that another species, like the whales, have huge gaps between phenotypes. Nothing looks gradual in evolution. Gaps always demand consideration of design.

Evolution: more gaps in foraminifera

by David Turell @, Thursday, October 18, 2018, 00:51 (2227 days ago) @ David Turell

Another look at the sudden change in forms:

https://www.sciencedaily.com/releases/2018/10/181017110950.htm

"Planktonic foraminifera (forams) -- tiny, shelled organisms that float in the sea -- left behind one of the most complete fossil records of evolutionary history in deep sea deposits. Consequently, evolutionists have a relatively sturdy grasp on when and how new lineages arose and developed their own unique features. However, a study publishing October 17 in the journal iScience reveals that one foram lineage evolved much more rapidly than everyone predicted, and researchers are looking beyond Darwin's original theories of gradual evolution to understand why.

"'It was an exciting moment. What our study and many others are starting to agree on is that evolution of forams is not necessarily gradual, as Darwin and more recent scientists thought," says first author Russell Bicknell, a palaeontologist at the University of New England's Palaeoscience Research Centre in Australia. "Life can exist for long periods of time exhibiting only minor changes followed by rapid, punctuated shifts."

***

"'The abrupt change in the shape of Truncorotalia's shell shows that foram lineages can evolve rapidly, explosively, and dramatically," says Bicknell. "That points to more complex evolutionary dynamics than previously thought and justifies a re-evaluation of the evolutionary dynamics of other foram lineages."

"The researchers think either of two post-Darwinian theories could describe the rapid changes they observed: punctuated equilibrium and quantum evolution. Punctuated equilibrium describes short bursts and subsequent steady periods of morphological change within a lineage. The theory of quantum evolution describes broader, rapid splits into new families, orders, and classes. If the theory fits, the researchers have potentially observed quantum evolution at a species level for the first time. In either case, the researchers believe previous theories of gradual evolution in foram lineages need reassessment.

***

"'Evolution is so much more complicated than we think," says Bicknell. "How, when, and why evolutionary changes occur constantly surprise us. It is one of the reasons working in evolution is so much fun.'"

Comment: It is best to abandon Darwin's theory of evolution, because staying with his presumptions slows real research.

Evolution: more gaps in foraminifera

by dhw, Tuesday, October 23, 2018, 12:44 (2221 days ago) @ David Turell

DAVID: Very complex article, but it shows that another species, like the whales, have huge gaps between phenotypes. Nothing looks gradual in evolution. Gaps always demand consideration of design.

quote: The researchers think either of two post-Darwinian theories could describe the rapid changes they observed: punctuated equilibrium and quantum evolution. Punctuated equilibrium describes short bursts and subsequent steady periods of morphological change within a lineage. The theory of quantum evolution describes broader, rapid splits into new families, orders, and classes. If the theory fits, the researchers have potentially observed quantum evolution at a species level for the first time. In either case, the researchers believe previous theories of gradual evolution in foram lineages need reassessment.

DAVID: It is best to abandon Darwin's theory of evolution, because staying with his presumptions slows real research.

It is best not to abandon a whole theory because you disagree with a part of that theory. I agree that it is best to abandon Darwin’s theory that evolution only proceeds gradually and nature does not make jumps. Even his "bulldog" Huxley disagreed with him, so what's new?

Evolution: more gaps in foraminifera

by David Turell @, Tuesday, October 23, 2018, 15:14 (2221 days ago) @ dhw

DAVID: Very complex article, but it shows that another species, like the whales, have huge gaps between phenotypes. Nothing looks gradual in evolution. Gaps always demand consideration of design.

quote: The researchers think either of two post-Darwinian theories could describe the rapid changes they observed: punctuated equilibrium and quantum evolution. Punctuated equilibrium describes short bursts and subsequent steady periods of morphological change within a lineage. The theory of quantum evolution describes broader, rapid splits into new families, orders, and classes. If the theory fits, the researchers have potentially observed quantum evolution at a species level for the first time. In either case, the researchers believe previous theories of gradual evolution in foram lineages need reassessment.

DAVID: It is best to abandon Darwin's theory of evolution, because staying with his presumptions slows real research.

dhw: It is best not to abandon a whole theory because you disagree with a part of that theory. I agree that it is best to abandon Darwin’s theory that evolution only proceeds gradually and nature does not make jumps. Even his "bulldog" Huxley disagreed with him, so what's new?

All that is left of Darwin is some form of common descent, and Tony disagrees with that.

Evolution: more gaps in foraminifera

by dhw, Wednesday, October 24, 2018, 11:23 (2220 days ago) @ David Turell

DAVID: It is best to abandon Darwin's theory of evolution, because staying with his presumptions slows real research.

dhw: It is best not to abandon a whole theory because you disagree with a part of that theory. I agree that it is best to abandon Darwin’s theory that evolution only proceeds gradually and nature does not make jumps. Even his "bulldog" Huxley disagreed with him, so what's new?

DAVID: All that is left of Darwin is some form of common descent, and Tony disagrees with that.

And you disagree with Tony, because you also believe in common descent. The dispute concerns how evolution works. You believe in a divine 3.8-billion-year-old computer programme plus dabbling; Darwin believed in random mutations and gradualism; Huxley rejected gradualism and Gould proposed punctuated equilibrium; I hypothesize cellular intelligence. None of us have abandoned the bedrock of Darwin’s theory, which is common descent.

Evolution: more gaps in foraminifera

by David Turell @, Wednesday, October 24, 2018, 18:40 (2220 days ago) @ dhw

DAVID: It is best to abandon Darwin's theory of evolution, because staying with his presumptions slows real research.

dhw: It is best not to abandon a whole theory because you disagree with a part of that theory. I agree that it is best to abandon Darwin’s theory that evolution only proceeds gradually and nature does not make jumps. Even his "bulldog" Huxley disagreed with him, so what's new?

DAVID: All that is left of Darwin is some form of common descent, and Tony disagrees with that.

dhw: And you disagree with Tony, because you also believe in common descent. The dispute concerns how evolution works. You believe in a divine 3.8-billion-year-old computer programme plus dabbling; Darwin believed in random mutations and gradualism; Huxley rejected gradualism and Gould proposed punctuated equilibrium; I hypothesize cellular intelligence. None of us have abandoned the bedrock of Darwin’s theory, which is common descent.

All your reply does is agree with me. And you won't abandon Darwin as s patron saint for you. What Darwin failed to do is based on what he did not know. The concept of common descent was present before Darwin's work. The concept of evolution from simple to complex was made more popular by his book, although his method of advancing evolution is demonstrably wrong.

Evolution: more gaps in foraminifera

by dhw, Thursday, October 25, 2018, 11:21 (2219 days ago) @ David Turell

dhw: Bacteria prove that multicellularity, the dog’s nose, the camel's hump, the weaverbird’s nest the monarch butterfly’s migration and the human brain are not necessary for life to survive. You also have your God specially designing bird sleep, dandelion seed, shrimp punching and insects hibernating. So why do you keep using the same old "not needed" and the same "by design" arguments to single out the human brain? They apply to every organ and organism of the multicellular world.

DAVID: And how did life jump from ever present bacteria to complex forms? Not by chance.

dhw: I asked why you keep trotting out the same old “not needed” and “by design” arguments to single out the human brain, when the same arguments apply to every other multicellular organism and natural wonder you can think of. You respond by changing the subject.

DAVID: Subject not changed if the discussion is viewed in totality. Our brain is demonstrably beyond any need to drive its appearance. It is you who constantly revert to stresses and environmental changes as causing evolution, while I think it is planned. Environment plays a small role, if any to explain whales, bats, etc.

And etc. etc. etc. Nobody knows the causes of speciation, and that includes the causes that led to humans descending from tree-dwelling apes. But the idea that environmental change drove our ancestors to climb down from (possibly disappearing) trees, to adopt bipedalism and to exercise and thereby develop their brains in devising new ways to improve their chances of survival seems to me every bit as plausible as the idea that your God preprogrammed the process 3.8 billion years ago, or popped in to fiddle with their anatomy before they climbed down, and fiddled with their brains so that they could think up new strategies and, in due course, extend their thoughts to matters beyond their immediate needs.

Evolution: more gaps in foraminifera

by David Turell @, Thursday, October 25, 2018, 18:46 (2219 days ago) @ dhw

dhw: Bacteria prove that multicellularity, the dog’s nose, the camel's hump, the weaverbird’s nest the monarch butterfly’s migration and the human brain are not necessary for life to survive. You also have your God specially designing bird sleep, dandelion seed, shrimp punching and insects hibernating. So why do you keep using the same old "not needed" and the same "by design" arguments to single out the human brain? They apply to every organ and organism of the multicellular world.

DAVID: And how did life jump from ever present bacteria to complex forms? Not by chance.

dhw: I asked why you keep trotting out the same old “not needed” and “by design” arguments to single out the human brain, when the same arguments apply to every other multicellular organism and natural wonder you can think of. You respond by changing the subject.

DAVID: Subject not changed if the discussion is viewed in totality. Our brain is demonstrably beyond any need to drive its appearance. It is you who constantly revert to stresses and environmental changes as causing evolution, while I think it is planned. Environment plays a small role, if any to explain whales, bats, etc.

dhw: And etc. etc. etc. Nobody knows the causes of speciation, and that includes the causes that led to humans descending from tree-dwelling apes. But the idea that environmental change drove our ancestors to climb down from (possibly disappearing) trees, to adopt bipedalism and to exercise and thereby develop their brains in devising new ways to improve their chances of survival seems to me every bit as plausible as the idea that your God preprogrammed the process 3.8 billion years ago, or popped in to fiddle with their anatomy before they climbed down, and fiddled with their brains so that they could think up new strategies and, in due course, extend their thoughts to matters beyond their immediate needs.

If other primates stayed in the trees and survive happily to this day, it is very difficult to see why a few dropped to the ground and they had to invent, or be helped by God, the complexities that are human beings. I obviously view the whole process totally differently than you.

Evolution: more gaps in foraminifera

by dhw, Friday, October 26, 2018, 11:31 (2218 days ago) @ David Turell

DAVID: Subject not changed if the discussion is viewed in totality. Our brain is demonstrably beyond any need to drive its appearance. It is you who constantly revert to stresses and environmental changes as causing evolution, while I think it is planned. Environment plays a small role, if any to explain whales, bats, etc.

dhw: And etc. etc. etc. Nobody knows the causes of speciation, and that includes the causes that led to humans descending from tree-dwelling apes. But the idea that environmental change drove our ancestors to climb down from (possibly disappearing) trees, to adopt bipedalism and to exercise and thereby develop their brains in devising new ways to improve their chances of survival seems to me every bit as plausible as the idea that your God preprogrammed the process 3.8 billion years ago, or popped in to fiddle with their anatomy before they climbed down, and fiddled with their brains so that they could think up new strategies and, in due course, extend their thoughts to matters beyond their immediate needs.

DAVID: If other primates stayed in the trees and survive happily to this day, it is very difficult to see why a few dropped to the ground and they had to invent, or be helped by God, the complexities that are human beings. I obviously view the whole process totally differently than you.

We are theorizing. There must have been a beginning. It is perfectly possible that in one location, the primates could not stay in the trees, whereas in other locations they could. So you have one group of primates forced to develop a new way of life, while the rest carry on as before. Just as some land-dwelling organisms took up marine life, and some sea-dwelling organisms took up land life, always depending on local conditions. Why do you find this less logical than your God preparing one group of primates/land-dwelling/sea-dwelling organisms for life in conditions that don’t yet exist? (See "big brain birth canal" for more details.)

Evolution: more gaps in foraminifera

by David Turell @, Friday, October 26, 2018, 15:24 (2218 days ago) @ dhw

DAVID: Subject not changed if the discussion is viewed in totality. Our brain is demonstrably beyond any need to drive its appearance. It is you who constantly revert to stresses and environmental changes as causing evolution, while I think it is planned. Environment plays a small role, if any to explain whales, bats, etc.

dhw: And etc. etc. etc. Nobody knows the causes of speciation, and that includes the causes that led to humans descending from tree-dwelling apes. But the idea that environmental change drove our ancestors to climb down from (possibly disappearing) trees, to adopt bipedalism and to exercise and thereby develop their brains in devising new ways to improve their chances of survival seems to me every bit as plausible as the idea that your God preprogrammed the process 3.8 billion years ago, or popped in to fiddle with their anatomy before they climbed down, and fiddled with their brains so that they could think up new strategies and, in due course, extend their thoughts to matters beyond their immediate needs.

DAVID: If other primates stayed in the trees and survive happily to this day, it is very difficult to see why a few dropped to the ground and they had to invent, or be helped by God, the complexities that are human beings. I obviously view the whole process totally differently than you.

dhw: We are theorizing. There must have been a beginning. It is perfectly possible that in one location, the primates could not stay in the trees, whereas in other locations they could. So you have one group of primates forced to develop a new way of life, while the rest carry on as before. Just as some land-dwelling organisms took up marine life, and some sea-dwelling organisms took up land life, always depending on local conditions. Why do you find this less logical than your God preparing one group of primates/land-dwelling/sea-dwelling organisms for life in conditions that don’t yet exist? (See "big brain birth canal" for more details.)

As usual you are blithely ignoring the complex design changes in phenotype that are required, as the animal leaves land, and miraculously grows fins. Or drops out of the trees and is suddenly bipedal. Actually Lucy was both tree and ground capable, a true transition form, but even at that her differences from apes is enormous. the usual gap that requires design and a designer.

Evolution: more gaps in foraminifera

by dhw, Saturday, October 27, 2018, 09:38 (2218 days ago) @ David Turell

DAVID: If other primates stayed in the trees and survive happily to this day, it is very difficult to see why a few dropped to the ground and they had to invent, or be helped by God, the complexities that are human beings. I obviously view the whole process totally differently than you.

dhw: We are theorizing. There must have been a beginning. It is perfectly possible that in one location, the primates could not stay in the trees, whereas in other locations they could. So you have one group of primates forced to develop a new way of life, while the rest carry on as before. Just as some land-dwelling organisms took up marine life, and some sea-dwelling organisms took up land life, always depending on local conditions. Why do you find this less logical than your God preparing one group of primates/land-dwelling/sea-dwelling organisms for life in conditions that don’t yet exist? (See "big brain birth canal" for more details.)

DAVID: As usual you are blithely ignoring the complex design changes in phenotype that are required, as the animal leaves land, and miraculously grows fins. Or drops out of the trees and is suddenly bipedal. Actually Lucy was both tree and ground capable, a true transition form, but even at that her differences from apes is enormous. the usual gap that requires design and a designer.

I am not blithely ignoring anything. You asked why some primates descended and others didn’t. I have offered you an explanation which you have completely ignored, preferring to confine the discussion to complex design changes. Nobody can explain the complex changes that lead to speciation, and so we theorize. The fact that we have found transitional forms is evidence for common descent.

Evolution: more gaps in foraminifera

by David Turell @, Saturday, October 27, 2018, 19:30 (2217 days ago) @ dhw

DAVID: If other primates stayed in the trees and survive happily to this day, it is very difficult to see why a few dropped to the ground and they had to invent, or be helped by God, the complexities that are human beings. I obviously view the whole process totally differently than you.

dhw: We are theorizing. There must have been a beginning. It is perfectly possible that in one location, the primates could not stay in the trees, whereas in other locations they could. So you have one group of primates forced to develop a new way of life, while the rest carry on as before. Just as some land-dwelling organisms took up marine life, and some sea-dwelling organisms took up land life, always depending on local conditions. Why do you find this less logical than your God preparing one group of primates/land-dwelling/sea-dwelling organisms for life in conditions that don’t yet exist? (See "big brain birth canal" for more details.)

DAVID: As usual you are blithely ignoring the complex design changes in phenotype that are required, as the animal leaves land, and miraculously grows fins. Or drops out of the trees and is suddenly bipedal. Actually Lucy was both tree and ground capable, a true transition form, but even at that her differences from apes is enormous. the usual gap that requires design and a designer.

dhw: I am not blithely ignoring anything. You asked why some primates descended and others didn’t. I have offered you an explanation which you have completely ignored, preferring to confine the discussion to complex design changes. Nobody can explain the complex changes that lead to speciation, and so we theorize. The fact that we have found transitional forms is evidence for common descent.

Agreed

Evolution: whale teeth and baleens

by David Turell @, Thursday, November 29, 2018, 22:54 (2184 days ago) @ David Turell

The way some whales feed they don't need teeth:

https://phys.org/news/2018-11-whales-lost-teeth-evolving-hair-like.html

Evolution: whale teeth and baleens

by David Turell @, Friday, November 30, 2018, 15:06 (2183 days ago) @ David Turell

David: The way some whales feed they don't need teeth:

https://phys.org/news/2018-11-whales-lost-teeth-evolving-hair-like.html

For some reason the excerpts didn't publish. From a different article:

https://www.newscientist.com/article/2186912-prehistoric-whales-used-to-simply-suck-the...

Whales were once all toothed predators. Around 36 million years ago, a group of them evolved to lose their teeth. We don’t know what drove that evolutionary trend, but it ultimately gave rise to today’s filter-feeding whales, including blue whales and humpback whales, that use baleen bristles in their mouths to remove tiny prey from the water.

Scientists haven’t been able to precisely reconstruct what happened during whales’ transition from teeth-bearing to filter-feeding – but they had assumed that the filter-feeding system emerged before the whales lost all their teeth.

***

Using CT scans, the team found the extinct whale (Maiabalae nanesbittae) had no alveoli – teeth sockets. It also had a different mouth structure than baleen-bearing whales, meaning it had no ability to filter-feed either.

“[The whale] represents a surprising intermediate stage between modern filter-feeding whales and their toothed ancestors,” Peredo says. “Our study makes it very unlikely that teeth and baleen existed at the same time in the same animals.”

Peredo suggests baleen might have appeared 23 million years ago, about 10 million years after whales lost their teeth.

But how did M. nanesbittae capture prey? Peredo says this whale was probably a suction-feeder like modern salmon and trout. The whale has an enlarged bone in the back of its mouth, resembling those observed in suction-feeding fish. Such bones help the mouth muscles generate a strong sucking force.

The transformation from a biter to a suction-feeder then into a filter-feeder also tells us about when whale diets changed. Sucking and biting are techniques that work best when the animal aims to take one target at a time, whereas filter-feeding targets bulk quantity of tiny organisms.

“There’s a good chance that [filter-feeding] is more energetically efficient,” Peredo says. “It seems to be a successful body plan for marine mammals.”

Comment: When a mammal enters a new environment to live the changes have to be very complex and enormous. Just hopping into the water doesn't work. Losing teeth and gaining a filter system isn't done stepwise. It has to be designed.

Evolution: whale teeth and baleens; another article

by David Turell @, Wednesday, December 05, 2018, 19:45 (2178 days ago) @ David Turell

More of the story:

https://mail.yahoo.com/d/folders/1/messages/AHmSTNVdqD4tXAggdgZ0WLZykDI?reason=norrinuser

"No creature on Earth is as successful an eater as the baleen whale. By swimming through clouds of krill with their mouths open wide, then sorting food from water by filtering it through a curtain of bony bristles, these cetaceans have grown bigger than any animal in the history of the planet. The largest dinosaur would have been dwarfed by the average 300,000-pound blue whale. Massive woolly mammoths would have swooned to see rorquals swallow half a million calories in a single mouthful.

***

"The first whales had jaws full of teeth, like their four-legged ancestors that abandoned the land for the ocean about 50 million years ago. But chewing, at least the way we do it, is not an effective strategy for dining at sea.

“'The rules of engagement are totally different underwater,” Pyenson told me. Whales “can’t use claws to subdue prey. . . . They don’t have opposable thumbs.” Imagine trying to munch on a meal you couldn’t even hold.

"For that reason, most of today’s whales that have teeth, such as dolphins and beluga, are suction feeders. They use their pearly whites to grab onto prey, then take advantage of the temporary pressure differential created when they open their mouths to slurp the food down their gullets.

"But this strategy entails spending a lot of time chasing single large prey, Pyenson said. So sometime around 30 million years ago, when a changing ocean environment probably led to a surge in planktonic organisms, whales picked up a new technique — swimming through a mass of many millions of small critters.

"This “lunge feeding” technique is the “largest biomechanical event on the planet,” Pyenson said. And it’s a genius way to eat. “It’s got a huge return on investment.”

"Baleen is essential to this strategy. But the origins of this structure — which is made from keratin, like hair and nails, rather than dentin and enamel, like teeth — have long been a mystery. Did early whales have both baleen and teeth? How long were they munchers before they became gulpers?

"In a new study in the journal Current Biology, Pyenson and his colleague, Carlos Mauricio Peredo, offer a clue: The newly discovered prehistoric whale Maiabalaena nesbittae, which lived about 33 million years ago, didn’t have teeth or baleen. To Pyenson, this suggests that the ancestors of today’s baleen whales totally gave up on teeth in favor of suction feeding, setting the stage for the rise of baleen a few million years later."

Comment: All by Darwin magic, of course. what happened takes a lot of planning and design.This discussion suggests that baleens came from hair follicle genes. How did they get to work from within the jaw?

Evolution: whale teeth and baleens; another article

by dhw, Thursday, December 06, 2018, 12:44 (2177 days ago) @ David Turell

QUOTE: “So sometime around 30 million years ago, when a changing ocean environment probably led to a surge in planktonic organisms, whales picked up a new technique — swimming through a mass of many millions of small critters.
The newly discovered prehistoric whale Maiabalaena nesbittae, which lived about 33 million years ago, didn’t have teeth or baleen. To Pyenson, this suggests that the ancestors of today’s baleen whales totally gave up on teeth in favor of suction feeding, setting the stage for the rise of baleen a few million years later."

DAVID: All by Darwin magic, of course. what happened takes a lot of planning and design. This discussion suggests that baleens came from hair follicle genes. How did they get to work from within the jaw?

And this discussion also suggests that the whole process took place in response to environmental change, as opposed to your theory that your God preprogrammes or dabbles change in advance of environmental change. Two hypotheses for you: 1) your God took away the teeth of pre-baleen whales, told them to go away and suction feed, and then a few million years later dabbled with all of them to insert baleens, because all this was essential to keep life going until he could produce humans; 2) pre-baleen whales took to suction feeding in response to the changing ocean environment and so they didn’t need their teeth, which then disappeared, and a few million years later the cell communities used their (possibly God-given) intelligence to adapt existing structures to improve the whale’s method of feeding.

Evolution: whale teeth and baleens; another article

by David Turell @, Thursday, December 06, 2018, 18:26 (2177 days ago) @ dhw

QUOTE: “So sometime around 30 million years ago, when a changing ocean environment probably led to a surge in planktonic organisms, whales picked up a new technique — swimming through a mass of many millions of small critters.
The newly discovered prehistoric whale Maiabalaena nesbittae, which lived about 33 million years ago, didn’t have teeth or baleen. To Pyenson, this suggests that the ancestors of today’s baleen whales totally gave up on teeth in favor of suction feeding, setting the stage for the rise of baleen a few million years later."

DAVID: All by Darwin magic, of course. what happened takes a lot of planning and design. This discussion suggests that baleens came from hair follicle genes. How did they get to work from within the jaw?

dhw: And this discussion also suggests that the whole process took place in response to environmental change, as opposed to your theory that your God preprogrammes or dabbles change in advance of environmental change. Two hypotheses for you: 1) your God took away the teeth of pre-baleen whales, told them to go away and suction feed, and then a few million years later dabbled with all of them to insert baleens, because all this was essential to keep life going until he could produce humans; 2) pre-baleen whales took to suction feeding in response to the changing ocean environment and so they didn’t need their teeth, which then disappeared, and a few million years later the cell communities used their (possibly God-given) intelligence to adapt existing structures to improve the whale’s method of feeding.

Of course a Darwin-based article will present your line of reasoning, which always avoids the need for design engineering.

Evolution: whale teeth and baleens; another article

by dhw, Friday, December 07, 2018, 13:24 (2176 days ago) @ David Turell

DAVID: This discussion suggests that baleens came from hair follicle genes. How did they get to work from within the jaw?

dhw: And this discussion also suggests that the whole process took place in response to environmental change, as opposed to your theory that your God preprogrammes or dabbles change in advance of environmental change. Two hypotheses for you: 1) your God took away the teeth of pre-baleen whales, told them to go away and suction feed, and then a few million years later dabbled with all of them to insert baleens, because all this was essential to keep life going until he could produce humans; 2) pre-baleen whales took to suction feeding in response to the changing ocean environment and so they didn’t need their teeth, which then disappeared, and a few million years later the cell communities used their (possibly God-given) intelligence to adapt existing structures to improve the whale’s method of feeding.

DAVID: Of course a Darwin-based article will present your line of reasoning, which always avoids the need for design engineering.

Sorry, but “Darwin-based” is no defence of hypothesis 1). My line of reasoning never avoids the need for “design engineering”. Its theistic version simply offers the possibility that your God gave cells/cell communities the ability to do their own designing – not in anticipation of changing conditions but in response to them.

Evolution: whale teeth and baleens; another article

by David Turell @, Friday, December 07, 2018, 18:13 (2176 days ago) @ dhw

DAVID: This discussion suggests that baleens came from hair follicle genes. How did they get to work from within the jaw?

dhw: And this discussion also suggests that the whole process took place in response to environmental change, as opposed to your theory that your God preprogrammes or dabbles change in advance of environmental change. Two hypotheses for you: 1) your God took away the teeth of pre-baleen whales, told them to go away and suction feed, and then a few million years later dabbled with all of them to insert baleens, because all this was essential to keep life going until he could produce humans; 2) pre-baleen whales took to suction feeding in response to the changing ocean environment and so they didn’t need their teeth, which then disappeared, and a few million years later the cell communities used their (possibly God-given) intelligence to adapt existing structures to improve the whale’s method of feeding.

DAVID: Of course a Darwin-based article will present your line of reasoning, which always avoids the need for design engineering.

dhw: Sorry, but “Darwin-based” is no defence of hypothesis 1). My line of reasoning never avoids the need for “design engineering”. Its theistic version simply offers the possibility that your God gave cells/cell communities the ability to do their own designing – not in anticipation of changing conditions but in response to them.

Why you constantly think God would give up control of one of His projects puzzles me. We can make up anything about God we want, but our only clues about God's thoughts are the results of His works, and then working backwards in our reasoning. I certainly don't reason like you do.

Evolution: whale teeth and baleens; another article

by dhw, Saturday, December 08, 2018, 09:55 (2175 days ago) @ David Turell

DAVID: This discussion suggests that baleens came from hair follicle genes. How did they get to work from within the jaw?

dhw: And this discussion also suggests that the whole process took place in response to environmental change, as opposed to your theory that your God preprogrammes or dabbles change in advance of environmental change. Two hypotheses for you: 1) your God took away the teeth of pre-baleen whales, told them to go away and suction feed, and then a few million years later dabbled with all of them to insert baleens, because all this was essential to keep life going until he could produce humans; 2) pre-baleen whales took to suction feeding in response to the changing ocean environment and so they didn’t need their teeth, which then disappeared, and a few million years later the cell communities used their (possibly God-given) intelligence to adapt existing structures to improve the whale’s method of feeding.

DAVID: Of course a Darwin-based article will present your line of reasoning, which always avoids the need for design engineering.

dhw: Sorry, but “Darwin-based” is no defence of hypothesis 1). My line of reasoning never avoids the need for “design engineering”. Its theistic version simply offers the possibility that your God gave cells/cell communities the ability to do their own designing – not in anticipation of changing conditions but in response to them.

DAVID: Why you constantly think God would give up control of one of His projects puzzles me. We can make up anything about God we want, but our only clues about God's thoughts are the results of His works, and then working backwards in our reasoning. I certainly don't reason like you do.

You tell me I always avoid the need for design engineering, I explain that I never ignore it, and so you switch back to the question of control, which has already been dealt with umpteen times! Ah well, round we go. Yes indeed, we work backwards from the results, which are millions and millions of life forms, econiches etc. etc. extant and extinct. You reason that your God’s motive for this diversity was to provide food to keep life going. And you then reason that his sole purpose for doing so was to produce H. sapiens, so that we would think about him and he could have a relationship with us, although he is always in full control and you simply don’t know why he chose this roundabout method of achieving his sole purpose. Why would he want to give up control? Perhaps because – as you have often said – he is hidden but watches us with interest, and it is more interesting to watch the unpredictable than to watch everything do precisely what you have prearranged for it to do. (But he can still dabble if he wants to.) This reading of God’s mind is an alternative to your own, as described above, and – to anticipate the next leap backwards – is no more “humanizing” than your own.

Evolution: whale teeth and baleens; another article

by David Turell @, Saturday, December 08, 2018, 21:57 (2175 days ago) @ dhw

DAVID: Of course a Darwin-based article will present your line of reasoning, which always avoids the need for design engineering.

dhw: Sorry, but “Darwin-based” is no defence of hypothesis 1). My line of reasoning never avoids the need for “design engineering”. Its theistic version simply offers the possibility that your God gave cells/cell communities the ability to do their own designing – not in anticipation of changing conditions but in response to them.

DAVID: Why you constantly think God would give up control of one of His projects puzzles me. We can make up anything about God we want, but our only clues about God's thoughts are the results of His works, and then working backwards in our reasoning. I certainly don't reason like you do.

dhw; You tell me I always avoid the need for design engineering, I explain that I never ignore it, and so you switch back to the question of control, which has already been dealt with umpteen times! Ah well, round we go. Yes indeed, we work backwards from the results, which are millions and millions of life forms, econiches etc. etc. extant and extinct. You reason that your God’s motive for this diversity was to provide food to keep life going. And you then reason that his sole purpose for doing so was to produce H. sapiens, so that we would think about him and he could have a relationship with us, although he is always in full control and you simply don’t know why he chose this roundabout method of achieving his sole purpose. Why would he want to give up control? Perhaps because – as you have often said – he is hidden but watches us with interest, and it is more interesting to watch the unpredictable than to watch everything do precisely what you have prearranged for it to do. (But he can still dabble if he wants to.) This reading of God’s mind is an alternative to your own, as described above, and – to anticipate the next leap backwards – is no more “humanizing” than your own.

He arranged for us to have free will. That gives Him plenty to watch if He wants to watch. I don't know if He wants to watch. Why should I know why He chose evolution as His methodology?
I can only take reasons from what I see. You want to know more than we can know.

Evolution: animal, vegetable or both?

by David Turell @, Tuesday, February 05, 2019, 17:46 (2116 days ago) @ dhw

Exactly what has been found in planktons:

https://www.knowablemagazine.org/article/living-world/2019/mixing-it-web-life

"After some groundbreaking experiments, Stoecker was one of the first scientists to describe how these types of plankton not only hunted their prey, but also sequestered the chloroplasts of their food sources and used them to get energy from sunlight. “I was very excited to find that they really were photosynthetic,” she says.

"Traditionally, marine microplankton had been divided similarly to species on land. You had plant-like phytoplankton, such as algae, and animal-like zooplankton that ate the phytoplankton. What Stoecker found was that some of these organisms were somewhere in the middle: They could eat like animals when food was present and photosynthesize like plants in the light. “If you think about it, it can be the best of both worlds,” says marine ecologist Dave A. Caron of the University of Southern California.

"Today, there’s growing realization that these in-between beasties — dubbed mixotrophs — are not only widespread but also play vital roles in the ecology of the oceans.

"At first, mixotrophs were considered a rarity of nature and no more than an evolutionary curiosity, but it soon became clear that they were widespread and abundant. In her first samples, Stoecker reported that more than a third of ciliates had chlorophyll in them. With time, more and more planktonic species that were previously considered either phytoplankton or zooplankton came to be recognized as mixotrophs.

"Scientists know now that there are myriad mixotrophs in the ocean and they come in all kinds of shapes and sizes, as well as in two main types. There are constitutive mixotrophs, whose own physiology permits production of energy from the sunlight. And there are non-constitutive mixotrophs, like Stoecker’s Strombidium and L. strobila, that must steal photosynthetic organelles from their prey, or keep whole algae hostage within them, in order to do it.

"It took a long time for anyone but plankton biologists to be especially interested in mixotrophs, says Stoecker, now at the University of Maryland’s Center for Environmental Science. But in the last decade, as evidence of their abundance and diversity builds up, their pivotal role in the marine ecosystem has become clearer.

***

"In a free-for-all frenzy, mixotrophs eat algae, animal-like plankton and each other, and are placed in the lower, broad base of food-web pyramids. The importance of their role in the ocean came to light when scientists started including mixotrophy in food web models — simulations of how the food web works under different conditions. What they found is that the survival of bigger organisms depends heavily on mixotrophs.

“'It’s basically redefining marine ecology,” says Mitra. “The base of the food web has practically changed.”

***

"As much as we know about mixotrophs now, “there’s still a big unknown,” says Stoecker. “In the ocean, in general, we still don’t know how many mixotrophs there are and how active they are.” Researchers are now studying the role mixotrophs play in Arctic regions and in other oceanic conditions.

"Scientists are also working on developing new methods to study the creatures’ physiology. But perhaps the biggest task has been reanalyzing species of plankton to check for mixotrophy since, historically, scientists would only classify plankton as plant-like or animal-like. “We were only studying half of it,” says Mitra. “We had to go back and reclassify the whole protist kingdom.” Advances in DNA sequencing technologies are making this endeavor easier, while also resolving the distribution and location of mixotrophs in the global oceans.

Comment: The bush of life gets bushier. This is no surprise. Photosynthesis appears in many forms.

Evolution: there is not enough time for Darwin to work

by David Turell @, Tuesday, February 19, 2019, 04:40 (2103 days ago) @ dhw

Like the Wistar Institute meeting in 1967, current math calculations say Darwin cannot work and the fossil record supports them:

https://world.wng.org/2019/02/if_rocks_could_talk

"German paleontologist Günter Bechly, former curator of the Stuttgart State Museum of Natural History, is a world expert on fossilized dragonflies. He has discovered more than 170 new species, and 11 new genera have been named after him.

"Why dragonflies? When I was researching in the tropics, I simply discovered that I loved these animals and found them very interesting: aquatic larvae with helicopterlike flight, compound eyes, beautiful colors, and strange, intricate mating behavior.

"In what ways do they add to the case for intelligent design? One way is their sudden appearance in the fossil record with fully formed wing articulation. Another evidence concerns the reproductive system in suborders of dragonflies. While the organs in each suborder are constructed from the same basic parts, in each one a different part of the system has the function of sperm transmission—a parallel development in which it appears the same kind of solution was derived independently in several instances. It indicates a kind of design template used several times, as an engineer would use to build different motor engines, using the same parts. (my bold)

"Their mouths are interesting? Larvae have prehensile mouths that can be thrust forward like a chameleon’s tongue. To do that, they must be partially detached from the head. How this happened at each intermediate state, as the Darwinian process would require—to be a viable state with an adaptive advantage—is very hard to imagine.

***

"Could the overwhelming percentage of biologists who reject ID be wrong? The problem is that, of the biologists who reject ID, 98 percent don’t work on the actual underpinnings of the neo-Darwinian theory. They simply learn the theory at university, accept it as true, and apply the theory to detailed problems: They study whether the East African locust is related more closely to the Asian or Australian locust, but they don’t think about the mathematical feasibility of the neo-Darwinian process. The few theoretical biologists who work on the underpinnings of the theory have mostly become critical of the neo-Darwinian process.

***

"How would you encourage someone entering the field of biology today? Be open-minded, read both sides, and don’t be indoctrinated by propaganda. Weigh all the evidence and then look for the best explanation of the evidence. Those who see that the standard Darwinian picture might be wrong should attend a Discovery Institute summer seminar to meet the scientists and ask critical questions. But I would also advise staying undercover until their career is a bit settled, because the risk to ruin their career is real, as I and many others have encountered.

"What areas of biology are particularly compelling for the future? One is the whole field of genetics, where you see the striking phenomena of overlapping genes where the same strands of DNA are used to code different genes. It’s like a book that you can read backwards and forwards and it still makes sense. This is nearly unbelievable to believe with a Darwinian process.

***

"What are your current projects? I’m working on discontinuities in the fossil record and explosion like events in the history of life. Not just the Cambrian explosion, but all over the history of life you see new body plans and complex new structures appearing out of nowhere without the kind of gradual transitions you should find according to Darwinian predictions.

"You’re working on the “waiting time problem”? Darwinian evolutionists seek confirmation in the fossil record and population genetics. But if you combine these two fields, you find that the time necessary for certain transitions would be at least 10 times longer than the time available. Michael Behe used mathematical modeling to study mutations where we have empirical data: for example, mosquito resistance to malaria drugs. Applying that model to a vertebrate species with a smaller population size and longer generational turnover, we find the time needed to get a single coordinated mutation is much longer than the existence of the entire universe.

"Just not enough time? A mathematician is doing the modeling, I’m establishing the fossil dating and windows of time. Molecular biologists and biochemists are working on the genetic underpinnings. We want to show that across nature and through all eras of Earth history, this time problem is everywhere and is the rule, not the exception. This refutes Darwinism. If Darwinism is still upheld as the ruling paradigm, it will be in spite of the contradictory, conflicting evidence."

Comment: Just like Wistar, but with more sudden appearances now in the fossil record. Note my bold. More evidence for my theory that God uses patterns. Bechly and I are similar converts. It just takes unbiased thought.

Evolution: the newly-found bacterial role:

by David Turell @, Friday, November 23, 2018, 20:22 (2190 days ago) @ David Turell

Bacteria play a role in every activity in the body, as the microbiome is studied and the influences the bacteria create is recognized:

https://www.quantamagazine.org/should-evolution-treat-our-microbes-as-part-of-us-20181120/

“'We’ve underestimated the potential contribution of microbes to traits we’ve been studying for decades or centuries,” said Kevin Theis, a microbiologist at Wayne State University who studies the paste-making microbes of the hyena. “If the genes for these important traits are actually in the microbiome and not the animal itself, then we need to take a systems-level approach and look at the host-microbe system as a whole.”

"Look closely enough at any plant or animal and you will discover a riot of bacteria, fungi and viruses forming a complex and interconnected ecosystem. A recent explosion of research reveals how deeply we rely on our microbial patterns to keep our bodies functioning, raising profound questions about what it means to be an individual.

***

"Some biologists are calling for a radical upgrade of evolutionary theory, arguing that prevailing ideas, developed from the study of bigger, more easily understood organisms, don’t fit nicely into this new world. Others contend that existing theory just needs to be applied more carefully. All agree that the micro and macro worlds are inescapably interdependent, and that biologists must explore the frontier of their interconnections.

***

"Holobionts and hologenomes are “incontrovertible realities of nature,” wrote Theis and his colleagues in the journal mSystems. Hologenomes contain vastly more genes than the host genome alone, and since at least a fraction of the microbial genes have significant bearing on the survival and reproduction of the host, we need to consider the hologenome as a possible unit of selection if we want to understand the evolution of the holobiont.

***

"Proponents of this hologenomic concept of evolution argue that if there is a fidelity across generations between hosts and microbes, then the holobiont embodies a coming together of numerous, disparate evolutionary lineages into a singular being, a coalition of many that contributes to the functional integrity of the whole. Only when considering the holobiont as a single entity capable of being shaped as a unit by natural selection can we make sense of its complexities.

***

"Typically, human babies not born by cesarean section acquire their mother’s vaginal microbes en route to the outside world. Mom’s microbes also rub off on a baby through close contact and breastfeeding. Although eventually the microbial community changes as the child moves more freely through the world, these early microbes play an outsize role in immune system development.

***

"Strassmann argues that focusing solely on what’s happening in the holobiont misses much of the microbes’ story. Many host-associated microbes spend significant chunks of their lives outside their host, in an environment where they’re subject to very different selection pressures. The holobiont idea, she says, puts blinders on our understanding of the evolution of these microbes, focusing attention on the host environment and neglecting other habitats that could shape a microbe’s character.

"Critics of holobiont-centered theories are not discounting the importance of studying the interconnections between microbes and hosts, but they think the holobiont framework is almost always misleading. They envision the holobiont as an ecological community, not an evolutionary individual. The knowledge that symbiotic relationships with microbes are important “doesn’t mean we have to completely forget what we know about how evolution and natural selection operate,” Strassmann said."

Comment: the article continues with debate about the meaning of this approach as if offers a new avenue to thinking about evolution. What occurs to me is we can see a new role for bacteria which have persisted since the beginning of life and perhaps this is the reason why they have remained so active in the process of evolving. They take new roles to play at all stages. They create immediate adaptations, for example, in digestion, but it is certainly obvious they do not design giant changes.

Evolution: microbiome of coral

by David Turell @, Saturday, November 24, 2018, 19:20 (2189 days ago) @ David Turell

Bacteria and other organisms are everywhere and obviously play a role in evolution as microbiomes:

https://phys.org/news/2018-11-corals-microbiomes-evolved.html

"Corals and the microbes they host evolved together, new research by Oregon State University shows.

***

"Modern corals are home to a complex composition of dinoflagellates, fungi, bacteria and archaea that together make up the coral microbiome. Shifts in microbiome composition are connected to changes in coral health.

"'Likely the ancestral corals also harbored complex microbial communities but there's a lot we don't know about how these coral-microbe symbioses evolved or the key factors influencing microbial communities in modern corals," Vega Thurber said. "Certain species of corals have distinct microbiomes, to the point where that occurred at some point in their evolutionary history. Not 400 million years ago, but there are specific groups of microbes that do show very strong evidence of evolving with their hosts more recently."

***

"On a lot of different scales, the more similar the coral hosts, the more similar the microbial communities are—both the whole community and particular microbes," McMinds said. "We collected samples from as many kinds of corals as was possible. For every sample set, we looked at the corals' tissue, skeleton and mucus to see what microbes were there."

"To do that, the researchers sequenced the 16S rRNA gene. The gene is present in every living organism, McMinds explains, but is slightly different. He likened it to a "molecular bar code" of each organism it belongs to.

"From there, the scientists could look for patterns between different corals' microbial communities and determine whether co-evolution of the corals and their microbiomes had taken place.

"'We found strong support for coral-microbe 'phylosymbiosis,' in which coral microbiome composition and richness is reflected in coral host's evolutionary history," Vega Thurber said. "When speciation for modern reef-building coral families began between roughly 25 million and 65 years ago, that was accompanied by large changes in microbiome richness. And changes continued to accumulate during more recent speciation events."

***

"It was something of a surprise to researchers to find that the microbial communities of the corals' calcium carbonate skeletons showed greater microbiome richness compared to the tissue and mucus microbiomes. Also, the skeletal microbiomes displayed the strongest signal of long-term phylosymbiosis—a pattern in which the diversification of a related group of host organisms correlates with changes in dissimilarities among their microbiomes.

"'We originally thought corals would show signs of phylosymbiosis throughout their entire phylogenetic history, and the results support that for the skeleton and tissue but not the mucus," McMinds said. "Despite variability in the chemical composition of mucus between species and significant host-specificity in the mucus microbiome, host specificity was limited to relatively recent divergences.'"

Comment: This line of research is just beginning, but there is no question that life
may have started with bacteria, but they have remained active to influence evolution over time in the multicellular forms that followed them..

Evolution: speciation through hybridization

by David Turell @, Tuesday, September 10, 2019, 19:20 (1899 days ago) @ David Turell

New findings suggest this may be a more rapid mechanism than chance mutations and natural selection:

https://www.quantamagazine.org/new-hybrid-species-remix-old-genes-creatively-20190910/

"Classically, the origin of new species is a slow, gradual process dependent on random mutations that build a bigger beak or a sexier song. If this novel trait helps a subpopulation exploit a new ecological niche or makes its members less likely to mate with neighboring populations, a new species may be born. As lineages remain isolated from one another, their diverging genomes accumulate differences that become increasingly incompatible. When speciation is complete, the genomes are so different that they don’t work when combined in a hybrid, producing infertile or unfit “dead ends.”

"Yet that is precisely the opposite of what Seehausen and his colleagues say is happening in many rapidly diverging species. Combinatorial speciation, they argue, explains how the genetic novelty for speciation can arise so quickly and is consistent with discoveries that hybridization is more commonplace than previously thought. Other biologists urge caution, however, because we simply don’t know enough about the evolutionary consequences of hybridization across the tree of life. They argue that there are too many known examples of extensive hybridization failing to create new species for anyone to speculate too boldly about the importance of combinatorial modes of speciation.

"The three authors’ views are shaped by their work on one of nature’s most explosive species radiations — that of African cichlid fish. In just 150,000 years, well over 700 species have radiated into a technicolor panoply of shapes, sizes and ecologies. Since Lake Victoria formed 15,000 years ago, about 500 species have diversified within its shores, making it an ideal system for biologists trying to understand the early stages of speciation.

***

"... some parts of the Lake Victoria cichlid genomes more closely resemble that of the Nile species while others are closer to the Congo one. “They’re a genetic mosaic of these two species that hybridized at the origin of Lake Victoria cichlids,” she said. Those mosaic genomes seeded the ancestral hybrid swarm with enough genetic variation from the parental lineages to fuel the fishes’ rapid spread and speciation.

***

"The ancient admixture event that prompted the diversification of African cichlids is just one of the ways old alleles can be recombined to help form new species. Combinatorial speciation encompasses the classic mechanism of hybrid speciation that farmers and gardeners know so well: In plants, it’s common for hybridization to immediately create a new species that is reproductively isolated from its parents.

***

"The list of species groups with similar patterns goes on — Darwin’s finches, the apple maggot fly, capuchino seedeaters, Hawaiian silverswords. The scientists who work on these systems have long recognized the potential importance of hybridization in their radiations.

"But Marques and his colleagues suggest that the accumulated genomic evidence warrants the introduction of “combinatorial speciation” as a new term to frame future research. The word “combinatorial,” Marques said, seemed to best describe the crucial “generation of new combinations from existing variation, which is really the commonality.”

***

“'Hybridization is really common, and much of the time it just might be neutral or deleterious gene flow,” she said. But even if we knew how helpful or harmful it is, that wouldn’t enable us to pinpoint its importance in speciation compared with, say, the gradual accumulation of genetic incompatibilities. And while some crosses between species yield hybrids that are viable and fertile, even closely related species sometimes turn out to be highly incompatible. “There is a lot we don’t understand about the genetic interactions impacting hybrids, let alone the interplay between the genetics of hybrids and their environments,” she said.

"Evolutionary biologists can find it satisfying when grand, unifying theories seem to suggest themselves from the data. But biology is messy. “These processes may just end up being quite system specific,” Schumer said."

Comment: A new concept, obviously not fully accepted.

Evolution: speciation through hybridization

by David Turell @, Wednesday, November 20, 2019, 20:11 (1828 days ago) @ David Turell

A study of evolution through hybridization in butterflies:

https://www.nature.com/articles/d41586-019-03521-4?utm_source=Nature+Briefing&utm_c...

"The data allowed Grishin’s team to build an evolutionary tree detailing the relationships of all the butterflies, as well as to determine the pace at which new species formed. The team suggests that fast-diversifying groups of butterflies are those that swap genes with close relatives through interbreeding — a phenomenon that could extend to other organisms.

***

"The tree also revealed that some groups of butterflies have evolved faster than others. Two of the fastest-evolving groups, commonly known as the blues and the whites, have developed highly specialized interactions with other organisms that might explain their rapid evolution, say Grishin’s team. The blues, or Polyommatinae, form symbiotic relationships with ants, whereas whites, or Pierini, have developed adaptations to feed on mustard plants that are toxic to many other insects.

***

"An analysis of genes shared by multiple species also showed that these diverse groups were more likely to have acquired genes through interbreeding between species, rather than from a distant ancestor. Many of the genes that are swapped between species are thought to be involved in mate recognition and other factors that can cause species splits. Grishin says that by spreading such genes, interbreeding — rather than the gradual accrual of new mutations — could be helping to drive the evolution of butterfly species."

Comment: All this study shows is minor speciation by hybridization. There are 30 animal phyla and butterflies are a huge family with subspecies at the bottom of the tree. When we discuss speciation, what I am really referring to is a real advance to a new level with a different sort of organism. In our short time on Earth we really cannot see it and have no idea how the Cambrian Explosion can occur, which ended with 30 final phyla,shrunk from about 56 originals.

Evolution: early snakes had hind legs

by David Turell @, Wednesday, November 20, 2019, 20:36 (1828 days ago) @ David Turell

Since there were legs in the Cambrian this is no surprise:

https://phys.org/news/2019-11-fossils-snakes-lost-legs.html

"The fossil discoveries published in Science Advances have revealed they possessed hind legs during the first 70 million years of their evolution.

"They also provide details about how the flexible skull of snakes evolved from their lizard ancestors.

"The evolution of the snake body has captivated researchers for a long time—representing one of the most dramatic examples of the vertebrate body's ability to adapt—but a limited fossil record has obscured our understanding of their early evolution until now.

"Dr. Alessandro Palci, from Flinders University, was part of the international research team that performed high-resolution (CT) scanning and light microscopy of the preserved skulls of Najash to reveal substantial new anatomical data on the early evolution of snakes.

"'Snakes are famously legless, but then so are many lizards. What truly sets snakes apart is their highly mobile skull, which allows them to swallow large prey items. For a long time we have been lacking detailed information about the transition from the relatively rigid skull of a lizard to the super flexible skull of snakes".

"'Najash has the most complete, three-dimensionally preserved skull of any ancient snake, and this is providing an amazing amount of new information on how the head of snakes evolved. It has some, but not all of the flexible joints found in the skull of modern snakes. Its middle ear is intermediate between that of lizards and living snakes, and unlike all living snakes it retains a well-developed cheekbone, which again is reminiscent of that of lizards."

***

"The new snake family tree also reveals that snakes possessed small but perfectly formed hind legs for the first 70 million years of their evolution.

"'These primitive snakes with little legs weren't just a transient evolutionary stage on the way to something better. Rather, they had a highly successful body plan that persisted across many millions of years, and diversified into a range of terrestrial, burowing and aquatic niches," says Professor Lee."

Comment: a logical finding

Evolution: fossil footprints

by David Turell @, Saturday, August 22, 2020, 22:24 (1552 days ago) @ David Turell

Of vertebrate footprints 313 million years ago:

https://www.sciencedaily.com/releases/2020/08/200821120756.htm

"Paleontological research has confirmed a series of recently discovered fossils tracks are the oldest recorded tracks of their kind to date within Grand Canyon National Park. In 2016, Norwegian geology professor, Allan Krill, was hiking with his students when he made a surprising discovery. Lying next to the trail, in plain view of the many hikers, was a boulder containing conspicuous fossil footprints.

***

"'These are by far the oldest vertebrate tracks in Grand Canyon, which is known for its abundant fossil tracks" says Rowland. "More significantly," he added, "they are among the oldest tracks on Earth of shelled-egg-laying animals, such as reptiles, and the earliest evidence of vertebrate animals walking in sand dunes."

"The track-bearing boulder fell from a nearby cliff-exposure of the Manakacha Formation. The presence of a detailed geologic map of the strata along the Bright Angel Trail, together with previous studies of the age of the Manakacha Formation, allowed the researchers to pin down the age of the tracks quite precisely to 313 +/- 0. 5 million years.

"The researchers' reconstruction of this animal's footfall sequence reveals a distinctive gait called a lateral-sequence walk, in which the legs on one side of the animal move in succession, the rear leg followed by the foreleg, alternating with the movement of the two legs on the opposite side. "Living species of tetrapods―dogs and cats, for example―routinely use a lateral-sequence gait when they walk slowly," says Rowland. "The Bright Angel Trail tracks document the use of this gait very early in the history of vertebrate animals. We previously had no information about that." Also revealed by the trackways is the earliest-known utilization of sand dunes by vertebrate animals."

Comment: The canyon is filled with fossils. I made several trips there , hiked Bright Angel four times, the last with my wife Susan. I've not only learned to identify many layers , was shown 200 million year old worm borings by our geologist guide. These tracks are from pre-primate animals

Evolution: the newly-found bacterial role:

by David Turell @, Thursday, March 28, 2019, 17:10 (2065 days ago) @ David Turell

The microbiome works importantly across the entire bush of life:

https://www.the-scientist.com/critic-at-large/opinion--individuals-are-greater-than-the...


It is widely accepted that all animals and plants host diverse microbial communities that are vitally important for their functioning and survival. In many cases, these microbiomes can be at least partially heritable, being passed from parent to offspring. Thus, when environmental changes occur, we would expect to see alterations not only in hosts’ physiology over subsequent generations, but also in their microbiomes.

Husband-and-wife team Eugene Rosenberg and Ilana Zilber-Rosenberg of Tel Aviv University in Israel were the first researchers to propose this concept (FEMS Microbiol Rev, 32:723–35, 2008). A host organism and its resident microbes—the so-called holobiont—functions as a whole on multiple levels, they argued, from the gene and chromosome to the organism’s anatomy and physiology, and acts as an independent unit of selection.

A famous example of this concept is the relationship between corals and their symbionts, the zooxanthellae. Researchers have demonstrated that some corals can evolve to tolerate higher water temperatures by changing the makeup of their symbiont communities. Because microbes have much shorter generation times than coral polyps, the genetic composition of the symbiont populations can evolve much more rapidly than that of their hosts, and these changes can confer higher tolerance on the holobiont unit.

Over the last decade, it has become evident that the idea of the evolutionary concept of the hologenome, which views the holobiont as the unit of selection, can be applied across the tree of life, with examples cropping up in plants and insects. This revelation motivated us to explore the relevance of the microbiome to the adaptation of so-called poikilothermic animals, which are unable to maintain a stable body temperature using internal mechanisms. Specifically, we set out to answer whether host selection for an environmental stressor such as cold exposure results in selection of fishes’ associated microbes.

We bred tropical blue tilapia, which are typically found in marine environments with high water temperatures of 24–28 °C. Over three generations, we selected for fish whose siblings had high survival rates in low-temperature conditions. We then compared the gut microbiomes of genetically cold-resistant fish to those of cold-sensitive fish. Despite having never experienced low-temperature environments themselves, these two groups had different gut microbiomes as a result of the selection. Moreover, when we challenged all these fish in low-temperature conditions, cold-resistant fish’s gut microbiomes were more stable, as were the fish’s transcriptomes. Thus, our selection regime shaped both the host and its associated microbiome to be more resilient to drops in temperature (eLife, 7:e36398, 2018).

These findings are no doubt just one example of coordination between a host and its microbes. As the evolutionary concept of the hologenome matures, researchers will likely document many more plant and animal communities that evolve with their microbiomes. It remains to be determined whether a microbiome’s compositional changes directly affect its host’s physiological response to changing environmental conditions. But the holo­genome concept will undoubtedly influence our understanding of the evolution and ecology of all organisms.

Comment: This is why bacteria never stopped existing.

Evolution: the newly-found bacterial role:

by dhw, Tuesday, April 02, 2019, 10:40 (2060 days ago) @ David Turell

DAVID: The microbiome works importantly across the entire bush of life:
https://www.the-scientist.com/critic-at-large/opinion--individuals-are-greater-than-the...

QUOTE:These findings are no doubt just one example of coordination between a host and its microbes. As the evolutionary concept of the hologenome matures, researchers will likely document many more plant and animal communities that evolve with their microbiomes. It remains to be determined whether a microbiome’s compositional changes directly affect its host’s physiological response to changing environmental conditions. But the holo¬genome concept will undoubtedly influence our understanding of the evolution and ecology of all organisms.

If we bear in mind that the “host” actually consists of cell communities, then it becomes blindingly obvious that the behaviour of the plant or animal “community” must be the result of coordination between all its cells as they respond to changing environmental conditions. This is what I take to be the “hologenome concept”, and is the basis of the hypothesis that evolution has occurred through “coordination between the host and its microbes” as they respond to changes in the environment.

Evolution: the newly-found bacterial role:

by David Turell @, Tuesday, April 02, 2019, 15:48 (2060 days ago) @ dhw

DAVID: The microbiome works importantly across the entire bush of life:
https://www.the-scientist.com/critic-at-large/opinion--individuals-are-greater-than-the...

QUOTE:These findings are no doubt just one example of coordination between a host and its microbes. As the evolutionary concept of the hologenome matures, researchers will likely document many more plant and animal communities that evolve with their microbiomes. It remains to be determined whether a microbiome’s compositional changes directly affect its host’s physiological response to changing environmental conditions. But the holo¬genome concept will undoubtedly influence our understanding of the evolution and ecology of all organisms.

dhw: If we bear in mind that the “host” actually consists of cell communities, then it becomes blindingly obvious that the behaviour of the plant or animal “community” must be the result of coordination between all its cells as they respond to changing environmental conditions. This is what I take to be the “hologenome concept”, and is the basis of the hypothesis that evolution has occurred through “coordination between the host and its microbes” as they respond to changes in the environment.

Obviously , as previously stated, bacteria have stayed around to play a major role in evolution.

Evolution: the newly-found bacterial role: nitrogen

by David Turell @, Saturday, April 20, 2019, 02:07 (2043 days ago) @ David Turell

Nitrogen is most of the atmosphere but is rare in the ground and is a major molecule in many protein molecules. Bacteria have a major role in fixing the nitrogen into the ground where it can be used by living organisms:

https://phys.org/news/2019-04-fuel-cells-bacteria.html

"The exchange of nitrogen between the atmosphere and organic matter is crucial for life on Earth because nitrogen is a major component of essential molecules such as proteins and DNA. One major route for this exchange, discovered only in the 1990s, is the anammox pathway found in certain bacteria. It proceeds via hydrazine, a highly reactive substance used by humans as a rocket fuel. Researchers now describe the structure of the enzyme performing the last step in this process: turning hydrazine into nitrogen gas and harvesting the energy set free in this way. The results, which were just published in Science Advances, show an unprecedented network of heme groups for handling the large number of electrons released during the chemical conversion.

"A number of bacteria perform such conversions and contribute to the biochemical nitrogen cycle (image) by producing more reactive forms of nitrogen.

"In the 1990s, scientists discovered a bacterial process called anaerobic ammonium oxidation (anammox). "We now believe this process is responsible for 30 to 70 percent of the yearly nitrogen removal from the oceans," explains Thomas Barends,...."Due to this characteristic, anammox bacteria are used in sustainable wastewater treatment all over the world," Cornelia Welte of Radboud University adds. During this process, bacteria convert nitrites and ammonia into dinitrogen (N2) and water, while generating energy for the cell. The molecule hydrazine is produced in an intermediate step. Hydrazine is a common component of rocket fuel, but its use by bacteria as a metabolic fuel is rather exotic—and surprising in living organisms because of its high toxicity. Welte: "So far, hydrazine has only been found in anammox and not in other bacteria." Until recently, little was known about how these bacteria harness the energy released during the hydrazine conversion.

" Previously the research group and their collaborators have described the structures of the enzymes hydrazine synthase and hydroxylamine oxidoreductase. The researchers now further unravel the anammox puzzle by describing the crystal structure of hydrazine dehydrogenase, the enzyme involved in the conversion of toxic hydrazine to harmless dinitrogen gas. "Both the use of hydrazine as well as the structure of hydrazine dehydrogenase are quite unique, making it important to uncover the biological process in detail," Welte explains.

***

"'One could compare the HDH complex to a fuel cell with electrical outlets that only fit certain types of plugs," says Thomas Barends, describing the structure and mechanism of HDH. The 'fuel' hydrazine enters the protein complex through a channel on the outside. The enzyme then catalyzes the conversion of hydrazine into nitrogen gas through an unprecedentedly large network of 192 heme groups. Then the electrons are carried to other parts of the bacterium, like the transfer of current to electrical consumers. These consumers then generate the cell's energy.

"'We are now working on finding the protein that takes up the electrons stored in the heme network," says Mohd Akram, postdoc in the Barends group and first author of the paper. From the structure they observed they expect that only small proteins can enter the complex, take up the electrons in a hollow space inside, and leave again. Selecting which proteins can access the electrons may help ensure the electrons are brought to the right place to be used for energy generation in the cell. "

Comment: Another very important process bacteria must produce for life to exist. Since it uses a strange toxic hydrazine molecule the origin of this process must provide protection for the producing bacteria and must invent two very complex enzymes. Why did these bacteria develop this process, which is not necessary for their survival? Good engineering by God? Not by chance.

Evolution: the newly-found bacterial role:

by David Turell @, Monday, August 31, 2020, 20:21 (1543 days ago) @ David Turell

An enzyme that has been fixing inorganic carbon for billion s of years:

https://phys.org/news/2020-08-link-evolutionary-history-carbon-fixing-protein.html

"A team led by researchers at the University of California, Davis, has discovered a missing link in the evolution of photosynthesis and carbon fixation. Dating back more than 2.4 billion years, a newly discovered form of the plant enzyme rubisco could give new insight into plant evolution and breeding.

"Rubisco is the most abundant enzyme on the planet. Present in plants, cyanobacteria (also known as blue-green algae) and other photosynthetic organisms, it's central to the process of carbon fixation and is one of Earth's oldest carbon-fixing enzymes.

"'It's the primary driver for producing food, so it can take CO2 from the atmosphere and fix that into sugar for plants and other photosynthetic organisms to use. It's the primary driving enzyme for feeding carbon into life that way," said Doug Banda, a postdoctoral scholar in the lab of Patrick Shih, assistant professor of plant biology in the UC Davis College of Biological Sciences.

"Form I rubisco evolved over 2.4 billion years ago before the Great Oxygenation Event, when cyanobacteria transformed the Earth's atmosphere by producing oxygen through photosynthesis. Rubisco's ties to this ancient event make it important to scientists studying the evolution of life.

"In a study appearing Aug. 31 in Nature Plants, Banda and researchers from UC Davis, UC Berkeley and the Lawrence Berkeley National Laboratory report the discovery of a previously unknown relative of form I rubisco, one that they suspect diverged from form I rubisco prior to the evolution of cyanobacteria.

"The new version, called form I-prime rubisco, was found through genome sequencing of environmental samples and synthesized in the lab. Form I-prime rubisco gives researchers new insights into the structural evolution of form I rubisco, potentially providing clues as to how this enzyme changed the planet.

***

"Form I rubisco is built from eight core large molecular subunits with eight small subunits perched on top and bottom. Each piece of the structure is important to photosynthesis and carbon fixation. Like form I rubisco, form I-prime rubisco is built from eight large subunits. However, it does not possess the small subunits previously thought essential.

"'The discovery of an octameric rubisco that forms without small subunits allows us to ask evolutionary questions about what life would've looked like without the functionality imparted by small subunits," said Banda. "Specifically, we found that form I-prime enzymes had to evolve fortified interactions in the absence of small subunits, which enabled structural stability in a time when Earth's atmosphere was rapidly changing."

"According to the researchers, form I-prime rubisco represents a missing link in evolutionary history. Since form I rubisco converts inorganic carbon into plant biomass, further research on its structure and functionality could lead to innovations in agriculture production."

Comment: Once again a study into enzymes, giant molecules that are especially adept at driving important reactions and because of their size require design.

Evolution: very early oxygen use

by David Turell @, Friday, February 26, 2021, 15:12 (1364 days ago) @ David Turell

Before the great oxidation event:

https://www.sciencemag.org/news/2021/02/first-organism-use-oxygen-may-have-appeared-sur...

"The first organisms to “breathe” oxygen—or at least use it—appeared 3.1 billion years ago, according to a new genetic analysis of dozens of families of microbes. The find is surprising because the Great Oxidation Event, which filled Earth’s atmosphere with the precious gas, didn’t occur until some 500 million years later.

"The advent of proteins that can use oxygen, Shih and others say, marks a key step in the emergence of aerobic microbes, which are those able to harness oxygen. “The transition from a world that was mostly anaerobic to one that was mostly aerobic was one of the major innovations in life,” says Tim Lyons, a biogeochemist at UC Riverside.

"Scientists broadly agree that Earth’s early atmosphere and oceans were all but devoid of oxygen gas. But there are signs that there was some oxygen around. Geochemists, for example, have found mineral deposits dated to about 3 billion years ago that they argue could only have formed in the presence of oxygen. And some evidence suggests cyanobacteria, the earliest photosynthetic organisms to release oxygen gas as a waste product—although not use it—may have arisen as early as 3.5 billion years ago.

***

"...they turned to a long-used approach that tracks the likely mutation rate of proteins to construct a “molecular clock.” The clock enabled them to pin down when each of these enzymes likely evolved. Of the 130 families of organisms they studied, Jabłońska and Tawfik were able to date 36 with high confidence.

“'We saw something quite striking,” Tawfik says: a “clear burst” of microbes using oxygen between 3 billion and 3.1 billion years ago. Twenty-two of the 36 families appear to have emerged at that time, while 12 came later, and only two seemed to come before, the team reports today in Nature Ecology & Evolution.

***

"Overall, the analysis suggests that about 3.1 billion years ago, an organism they dub the last universal oxygen ancestor emerged, Tawfik says. That ancestor in turn gave rise to aerobes that were able to take advantage of the increased energy output that oxygen use enabled. Eventually, this led to multicellular organisms, animals, and us.

"If that transition did occur about 3 billion years ago, it suggests oxygen-using organisms didn’t immediately sweep across the planet. Rather, the ability to use oxygen likely evolved in small pockets that slowly spread over hundreds of millions of years. And only when they became abundant enough did these organisms modify Earth’s environment enough to produce enough oxygen to lead to the Great Oxidation Event."

Comment: The best way to use energy is by burning it with oxygen. But oxygen is so dangerous a full compliment of anti-oxidants must be developed to control its use. This has to be designed because oxygen is so difficult to handle

Evolution: the newly-found bacterial role:

by David Turell @, Saturday, August 10, 2019, 22:34 (1930 days ago) @ David Turell

Bacteria have always been round and are found to have a very expanded role, well beyond what was previously thought. They make tiny proteins that have been missed before:

https://www.sciencedaily.com/releases/2019/08/190808152543.htm

"...there's mounting evidence that many aspects of our health are closely intertwined with the composition and hardiness of our microscopic compatriots, though exactly how is still mostly unclear.

"...researchers at the Stanford University School of Medicine have discovered that these microbial hitchhikers -- collectively known as the human microbiome -- are churning out tens of thousands of proteins so small that they've gone unnoticed in previous studies. The proteins belong to more than 4,000 new biological families predicted to be involved in, among other processes, the warfare waged among different bacterial strains as they vie for primacy in coveted biological niches, the cell-to-cell communication between microbes and their unwitting hosts, and the critical day-to-day housekeeping duties that keep the bacteria happy and healthy.

"Because they are so small -- fewer than 50 amino acids in length -- it's likely the proteins fold into unique shapes that represent previously unidentified biological building blocks. If the shapes and functions of these proteins can be recreated in the lab, they could help researchers advance scientific understanding of how the microbiome affects human health and pave the way for new drug discovery.

***

"It might be intimidating for the uninitiated to think too deeply about the vast numbers of bacteria that live on and in each of us. They account for far more cells in and on the human body than actual human cells do. Yet these tiny passengers are rarely malicious. Instead, they help with our digestion, supplement our diet and generally keep us running at our peak. But in many cases, it's been difficult to pick apart the molecular minutiae behind this partnership. (my bold)

***

"To tackle the problem, Sberro decided to compare potential small-protein-coding genes among many different microbes and samples. Those that were identified repeatedly in several species and samples were more likely to be true positives, she thought. When she applied the analysis to large data sets, Sberro found not the hundreds of genes she and Bhatt had expected, but tens of thousands. The proteins predicted to be encoded by the genes could be sorted into more than 4,000 related groups, or families, likely to be involved in key biological processes such as intercellular communication and warfare, as well as maintenance tasks necessary to keep the bacteria healthy.

***

"The researchers confirmed the genes encoded true proteins by showing they are transcribed into RNA and shuttled to the ribosome for translation -- key steps in the protein-making pathway in all organisms. They are now working with collaborators to learn more about the proteins' functions and to identify those that might be important to the bacteria fighting for space in our teeming intestinal carpet. Such proteins might serve as new antibiotics or drugs for human use, they believe.

"'Small proteins can be synthesized rapidly and could be used by the bacteria as biological switches to toggle between functional states or to trigger specific reactions in other cells," Bhatt said. "They are also easier to study and manipulate than larger proteins, which could facilitate drug development. We anticipate this to be a valuable new area of biology for study.'"

Comment: Bacteria have been obviously kept around since the beginning of life since they are seen to contribute to so many beneficial functions. It looks like a very well-designed plan to me. Imagine, your microbiome might weigh more than he rest of you!

Evolution: the newly-found bacterial role:

by dhw, Sunday, August 11, 2019, 11:24 (1929 days ago) @ David Turell

DAVID: Bacteria have always been round and are found to have a very expanded role, well beyond what was previously thought. They make tiny proteins that have been missed before:
https://www.sciencedaily.com/releases/2019/08/190808152543.htm

QUOTE: "...there's mounting evidence that many aspects of our health are closely intertwined with the composition and hardiness of our microscopic compatriots, though exactly how is still mostly unclear.

DAVID: Bacteria have been obviously kept around since the beginning of life since they are seen to contribute to so many beneficial functions. It looks like a very well-designed plan to me. […]

They also contribute to multiple diseases. All part of the well-designed plan? But of far more significance to me is the fact that all multicellular organisms consist of communities that work together. This is Lynn Margulis’s theory of cooperation as being the crucial factor in evolution. We must remember that every single bacterium is concerned with its survival – whether we judge its methods to be fair or foul. Each of us is a community of communities, and it is not difficult to envisage how this may have arisen through individual intelligences combining to form every combination known to us, whether extant or extinct. And this has nothing whatsoever to do with the existence or otherwise of God, because it is the process that constitutes Chapter Two of life, not Chapter One. Chapter One deals with the origin, and has everything to do with the existence or otherwise of God.

Evolution: the newly-found bacterial role:

by David Turell @, Sunday, August 11, 2019, 15:35 (1929 days ago) @ dhw

DAVID: Bacteria have always been round and are found to have a very expanded role, well beyond what was previously thought. They make tiny proteins that have been missed before:
https://www.sciencedaily.com/releases/2019/08/190808152543.htm

QUOTE: "...there's mounting evidence that many aspects of our health are closely intertwined with the composition and hardiness of our microscopic compatriots, though exactly how is still mostly unclear.

DAVID: Bacteria have been obviously kept around since the beginning of life since they are seen to contribute to so many beneficial functions. It looks like a very well-designed plan to me. […]

dhw: They also contribute to multiple diseases. All part of the well-designed plan? But of far more significance to me is the fact that all multicellular organisms consist of communities that work together. This is Lynn Margulis’s theory of cooperation as being the crucial factor in evolution. We must remember that every single bacterium is concerned with its survival – whether we judge its methods to be fair or foul. Each of us is a community of communities, and it is not difficult to envisage how this may have arisen through individual intelligences combining to form every combination known to us, whether extant or extinct. And this has nothing whatsoever to do with the existence or otherwise of God, because it is the process that constitutes Chapter Two of life, not Chapter One. Chapter One deals with the origin, and has everything to do with the existence or otherwise of God.

But it is in Chapter One that bacteria appear at the start of life along with a proliferation of other one-celled forms. Note they compete and fight with each other from the beginning, which means Darwin's point about continuous competition always plays a major role, and human diseases are a result. But at the same time bacteria are very importantly beneficial. So why can't it all part of God's planning?

Evolution: the newly-found bacterial role:

by dhw, Monday, August 12, 2019, 12:36 (1928 days ago) @ David Turell

DAVID: Bacteria have been obviously kept around since the beginning of life since they are seen to contribute to so many beneficial functions. It looks like a very well-designed plan to me. […]

dhw: They also contribute to multiple diseases. All part of the well-designed plan? But of far more significance to me is the fact that all multicellular organisms consist of communities that work together. This is Lynn Margulis’s theory of cooperation as being the crucial factor in evolution. We must remember that every single bacterium is concerned with its survival – whether we judge its methods to be fair or foul. Each of us is a community of communities, and it is not difficult to envisage how this may have arisen through individual intelligences combining to form every combination known to us, whether extant or extinct. And this has nothing whatsoever to do with the existence or otherwise of God, because it is the process that constitutes Chapter Two of life, not Chapter One. Chapter One deals with the origin, and has everything to do with the existence or otherwise of God.

DAVID: But it is in Chapter One that bacteria appear at the start of life along with a proliferation of other one-celled forms. Note they compete and fight with each other from the beginning, which means Darwin's point about continuous competition always plays a major role, and human diseases are a result. But at the same time bacteria are very importantly beneficial. So why can't it all part of God's planning?

This is a jumble of observations. Bacteria remain bacteria. Chapter Two is the arrival of multicellular organisms which result from single cells cooperating to create new forms of life – i.e. the history of evolution, for those of us who believe in it. My point about diseases was simply to redress the balance, since you only mentioned beneficial functions, but you are right: disease may have been part of your God’s plan. We can’t read his mind. None of this alters the fact that we are a community of communities, in which cells cooperate to produce a functioning whole, and since many scientists support the theory of bacterial and cellular intelligence (as championed by Margulis), it is perfectly possible that multicellular life (Chapter Two) evolved as a result of these individual organisms pooling their perhaps God-given (Chapter One) intelligences.

Evolution: the newly-found bacterial role:

by David Turell @, Monday, August 12, 2019, 15:29 (1928 days ago) @ dhw

DAVID: Bacteria have been obviously kept around since the beginning of life since they are seen to contribute to so many beneficial functions. It looks like a very well-designed plan to me. […]

dhw: They also contribute to multiple diseases. All part of the well-designed plan? But of far more significance to me is the fact that all multicellular organisms consist of communities that work together. This is Lynn Margulis’s theory of cooperation as being the crucial factor in evolution. We must remember that every single bacterium is concerned with its survival – whether we judge its methods to be fair or foul. Each of us is a community of communities, and it is not difficult to envisage how this may have arisen through individual intelligences combining to form every combination known to us, whether extant or extinct. And this has nothing whatsoever to do with the existence or otherwise of God, because it is the process that constitutes Chapter Two of life, not Chapter One. Chapter One deals with the origin, and has everything to do with the existence or otherwise of God.

DAVID: But it is in Chapter One that bacteria appear at the start of life along with a proliferation of other one-celled forms. Note they compete and fight with each other from the beginning, which means Darwin's point about continuous competition always plays a major role, and human diseases are a result. But at the same time bacteria are very importantly beneficial. So why can't it all part of God's planning?

dhw: This is a jumble of observations. Bacteria remain bacteria. Chapter Two is the arrival of multicellular organisms which result from single cells cooperating to create new forms of life – i.e. the history of evolution, for those of us who believe in it. My point about diseases was simply to redress the balance, since you only mentioned beneficial functions, but you are right: disease may have been part of your God’s plan. We can’t read his mind. None of this alters the fact that we are a community of communities, in which cells cooperate to produce a functioning whole, and since many scientists support the theory of bacterial and cellular intelligence (as championed by Margulis), it is perfectly possible that multicellular life (Chapter Two) evolved as a result of these individual organisms pooling their perhaps God-given (Chapter One) intelligences.

Note my entry today about a particular Archaea which finally cultured supports your comment

Evolution: the newly-found bacterial role:

by dhw, Tuesday, August 13, 2019, 10:44 (1927 days ago) @ David Turell

dhw: ...we are a community of communities, in which cells cooperate to produce a functioning whole, and since many scientists support the theory of bacterial and cellular intelligence (as championed by Margulis), it is perfectly possible that multicellular life (Chapter Two) evolved as a result of these individual organisms pooling their perhaps God-given (Chapter One) intelligences.

DAVID: Note my entry today about a particular Archaea which finally cultured supports your comment.

Thank you. Herewith my comment on your entry:

DAVID (Under "origin of eukaryotes"): Still not well understood, but an amazing advance in studying descendants of early life

And yet more evidence for Margulis’ theory of endosymbiosis, leading to her much wider theory that evolution has come about through cooperation between cells, which she regarded as being intelligent.

Under “Reality”:

dhw: “We are talking about molecular biology, and lots of organisms use chemical signals to communicate. These include bacteria, which are single cells. Many scientists agree that they are sentient, communicative, cooperative, decision-making, and therefore intelligent. Of course their “consciousness” is not comparable to ours, but David’s theory that 3.8 billion years ago his God preprogrammed every single bacterial response to every single new problem for the rest of time seems to me less likely than the (theistic) theory that his God gave them the intelligence to work out their own solutions. This would also apply to our own cell communities which at some time in the past cooperated to produce every individual organ in our bodies, and which continue (now mainly automatically) to cooperate in enabling those organs to function. (See also below.)

DAVID: And I reply it all can be automatic, based on instructions the organisms or cells carry.

Which, I repeat, means that 3.8 billion years ago your God provided the very first cells with programmes for every single development in the history of evolution, including every solution to every problem bacteria will ever face. Yes, it “can be” so – just as there “can be” an invisible teapot orbiting the sun (Bertrand Russell).

Under “Magic embryology: what guides cell development, placement?

QUOTE: “The gene does not exist in a vacuum,” Saunders said. “And we’re realizing more and more that the mechanical environment in which those genes are operating matters” — including for decisions about cell fate."

DAVID: It is obvious embryonic cells are controlled by chemical and physical influences. but an overall body plan has to exist. Darwin does not explain the development of embryology in any of his theories. It is magical and strongly suggests that only design fits.

This article shows how embryology mirrors the whole process of evolution. Of course cells/cell communities respond to their environment, whether internal or external, and adjust accordingly. If they didn’t, they would not survive. I agree that only design fits, but every single species – which you and I believe descended from former species – has introduced new features, which means the embryo has inherited the innovations which the cell communities have newly designed (or in your theory were preprogrammed 3.8 billion years ago). Yes, an overall body plan has to exist, but it also had to be invented in the first place, as each species either adjusted to or exploited the environment. I agree that once it has been established, the process has to work more or less automatically – just as factory workers must follow given procedures (though that does not mean they are automatons) – but the process itself was first introduced by the cell communities of the preceding organism, and that could not have been automatic because it deviated from its inheritance. Divinely preprogrammed 3.8 billion years ago, the result of chance mutations, or the product of (possibly God-given) cellular intelligence?

Evolution: the newly-found bacterial role:

by David Turell @, Tuesday, August 13, 2019, 15:02 (1927 days ago) @ dhw

Under “Reality”:

dhw: “We are talking about molecular biology, and lots of organisms use chemical signals to communicate. These include bacteria, which are single cells. Many scientists agree that they are sentient, communicative, cooperative, decision-making, and therefore intelligent. Of course their “consciousness” is not comparable to ours, but David’s theory that 3.8 billion years ago his God preprogrammed every single bacterial response to every single new problem for the rest of time seems to me less likely than the (theistic) theory that his God gave them the intelligence to work out their own solutions. This would also apply to our own cell communities which at some time in the past cooperated to produce every individual organ in our bodies, and which continue (now mainly automatically) to cooperate in enabling those organs to function. (See also below.)

DAVID: And I reply it all can be automatic, based on instructions the organisms or cells carry.

dhw: Which, I repeat, means that 3.8 billion years ago your God provided the very first cells with programmes for every single development in the history of evolution, including every solution to every problem bacteria will ever face. Yes, it “can be” so – just as there “can be” an invisible teapot orbiting the sun (Bertrand Russell).

Or God steps in at many steps to adjust designs.


Under “Magic embryology: what guides cell development, placement?

QUOTE: “The gene does not exist in a vacuum,” Saunders said. “And we’re realizing more and more that the mechanical environment in which those genes are operating matters” — including for decisions about cell fate."

DAVID: It is obvious embryonic cells are controlled by chemical and physical influences. but an overall body plan has to exist. Darwin does not explain the development of embryology in any of his theories. It is magical and strongly suggests that only design fits.

dhw; This article shows how embryology mirrors the whole process of evolution. Of course cells/cell communities respond to their environment, whether internal or external, and adjust accordingly. If they didn’t, they would not survive. I agree that only design fits, but every single species – which you and I believe descended from former species – has introduced new features, which means the embryo has inherited the innovations which the cell communities have newly designed (or in your theory were preprogrammed 3.8 billion years ago). Yes, an overall body plan has to exist, but it also had to be invented in the first place, as each species either adjusted to or exploited the environment. I agree that once it has been established, the process has to work more or less automatically – just as factory workers must follow given procedures (though that does not mean they are automatons) – but the process itself was first introduced by the cell communities of the preceding organism, and that could not have been automatic because it deviated from its inheritance. Divinely preprogrammed 3.8 billion years ago, the result of chance mutations, or the product of (possibly God-given) cellular intelligence?

I note your agreement in regard to the need for design in bold above. Complex design requires complex thought. Cell committees do not fit the requirement. Your cellular theory fits only tiny modifications, not major alterations, as in whale evolution.

Evolution: the newly-found bacterial role:

by dhw, Wednesday, August 14, 2019, 13:18 (1926 days ago) @ David Turell

DAVID: […] it all can be automatic, based on instructions the organisms or cells carry.

dhw: Which, I repeat, means that 3.8 billion years ago your God provided the very first cells with programmes for every single development in the history of evolution, including every solution to every problem bacteria will ever face. Yes, it “can be” so – just as there “can be” an invisible teapot orbiting the sun (Bertrand Russell).

DAVID: Or God steps in at many steps to adjust designs.

I thought you were happy to dispense with the dabbling. Under “God’s divine nature”: “My thought about dabbling has always been a tentative alternative. I can easily accept the author’s viewpoint that dabbling is not required.” Which means you can easily accept that your God provided the first cells with programmes for every single life form etc., and every single solution to every problem bacteria would ever face.

Under “Magic embryology: what guides cell development, placement?”

dhw: This article shows how embryology mirrors the whole process of evolution. Of course cells/cell communities respond to their environment, whether internal or external, and adjust accordingly. If they didn’t, they would not survive. I agree that only design fits, [David’s bold] but every single species – which you and I believe descended from former species – has introduced new features, which means the embryo has inherited the innovations which the cell communities have newly designed (or in your theory were preprogrammed 3.8 billion years ago). Yes, an overall body plan has to exist, but it also had to be invented in the first place, as each species either adjusted to or exploited the environment. I agree that once it has been established, the process has to work more or less automatically – just as factory workers must follow given procedures (though that does not mean they are automatons) – but the process itself was first introduced by the cell communities of the preceding organism, and that could not have been automatic because it deviated from its inheritance. Divinely preprogrammed 3.8 billion years ago, the result of chance mutations, or the product of (possibly God-given) cellular intelligence?[/i][dhw’s bold]

DAVID: I note your agreement in regard to the need for design in bold above. Complex design requires complex thought. Cell committees do not fit the requirement. Your cellular theory fits only tiny modifications, not major alterations, as in whale evolution.

Yes, I agree that the complexities require design, and I disagree with your authoritative statement that cell communities are incapable of it. You don’t know that, and nor do I. It’s a theory, also promulgated by Shapiro, following on from the findings of such scientific luminaries as Margulis and McClintock, who were pioneers in the field of cellular intelligence. I ended my post with three possible explanations, now bolded. I really don’t know why you consider the first to be more credible than the third.

Evolution: the newly-found bacterial role:

by David Turell @, Wednesday, August 14, 2019, 16:42 (1926 days ago) @ dhw

DAVID: […] it all can be automatic, based on instructions the organisms or cells carry.

dhw: Which, I repeat, means that 3.8 billion years ago your God provided the very first cells with programmes for every single development in the history of evolution, including every solution to every problem bacteria will ever face. Yes, it “can be” so – just as there “can be” an invisible teapot orbiting the sun (Bertrand Russell).

DAVID: Or God steps in at many steps to adjust designs.

dhw: I thought you were happy to dispense with the dabbling. Under “God’s divine nature”: “My thought about dabbling has always been a tentative alternative. I can easily accept the author’s viewpoint that dabbling is not required.” Which means you can easily accept that your God provided the first cells with programmes for every single life form etc., and every single solution to every problem bacteria would ever face.

My theories have to have flexibility. Dabbling cannot be absolutely ruled out.


Under “Magic embryology: what guides cell development, placement?”

dhw: This article shows how embryology mirrors the whole process of evolution. Of course cells/cell communities respond to their environment, whether internal or external, and adjust accordingly. If they didn’t, they would not survive. I agree that only design fits, [David’s bold] but every single species – which you and I believe descended from former species – has introduced new features, which means the embryo has inherited the innovations which the cell communities have newly designed (or in your theory were preprogrammed 3.8 billion years ago). Yes, an overall body plan has to exist, but it also had to be invented in the first place, as each species either adjusted to or exploited the environment. I agree that once it has been established, the process has to work more or less automatically – just as factory workers must follow given procedures (though that does not mean they are automatons) – but the process itself was first introduced by the cell communities of the preceding organism, and that could not have been automatic because it deviated from its inheritance. Divinely preprogrammed 3.8 billion years ago, the result of chance mutations, or the product of (possibly God-given) cellular intelligence?[/i][dhw’s bold]

DAVID: I note your agreement in regard to the need for design in bold above. Complex design requires complex thought. Cell committees do not fit the requirement. Your cellular theory fits only tiny modifications, not major alterations, as in whale evolution.

dhw: Yes, I agree that the complexities require design, and I disagree with your authoritative statement that cell communities are incapable of it. You don’t know that, and nor do I. It’s a theory, also promulgated by Shapiro, following on from the findings of such scientific luminaries as Margulis and McClintock, who were pioneers in the field of cellular intelligence. I ended my post with three possible explanations, now bolded. I really don’t know why you consider the first to be more credible than the third.

Shapiro and the others considered cellular intelligence to allow for minor adaptations. You are the one stretching it to major species modification. Not likely since so much advanced design is required

Evolution: the newly-found bacterial role:

by dhw, Thursday, August 15, 2019, 09:56 (1926 days ago) @ David Turell

dhw: I thought you were happy to dispense with the dabbling. Under “God’s divine nature”: “My thought about dabbling has always been a tentative alternative. I can easily accept the author’s viewpoint that dabbling is not required.” Which means you can easily accept that your God provided the first cells with programmes for every single life form etc., and every single solution to every problem bacteria would ever face.

DAVID: My theories have to have flexibility. Dabbling cannot be absolutely ruled out.

Ah, good to hear that your fixed beliefs are flexible, apart from those we keep discussing under “Unanswered questions”!

dhw: Yes, I agree that the complexities require design, and I disagree with your authoritative statement that cell communities are incapable of it. You don’t know that, and nor do I. It’s a theory, also promulgated by Shapiro, following on from the findings of such scientific luminaries as Margulis and McClintock, who were pioneers in the field of cellular intelligence. I ended my post with three possible explanations, now bolded. I really don’t know why you consider the first to be more credible than the third.

DAVID: Shapiro and the others considered cellular intelligence to allow for minor adaptations. You are the one stretching it to major species modification. Not likely since so much advanced design is required.

Since both Shapiro and McClintock champion(ed) the concept of cellular intelligence, how do you think Shapiro’s “natural genetic engineering” works?

Natural genetic engineering - Wikipedia
https://en.wikipedia.org/wiki/Natural_genetic_engineering

Shapiro points out that multiple cellular systems can affect DNA in response to specific environmental stimuli. These "directed" changes stand in contrast to both the undirected mutations in the modern synthesis and (in Shapiro's interpretation) the ban on information flowing from the environment into the genome.
In the 1992 Genetica paper that introduced the concept, Shapiro begins by listing three lessons from molecular genetics:
• there is a surprising amount of genetic conservation across taxonomic boundaries,
• the mosaic structure of the genome results in multiple nonlocal genes having multiple phylogenic effects, and, drawing on the work of his friend and collaborator Barbara McClintock,
• the existence of multiple cellular mechanisms (including mobile genetic elements) that can restructure DNA.
From these, Shapiro concludes:
It can be argued that much of genome change in evolution results from a genetic engineering process utilizing the biochemical systems for mobilizing and reorganizing DNA structures present in living cells.[1]

Evolution: the newly-found bacterial role:

by David Turell @, Thursday, August 15, 2019, 19:45 (1925 days ago) @ dhw

dhw: I thought you were happy to dispense with the dabbling. Under “God’s divine nature”: “My thought about dabbling has always been a tentative alternative. I can easily accept the author’s viewpoint that dabbling is not required.” Which means you can easily accept that your God provided the first cells with programmes for every single life form etc., and every single solution to every problem bacteria would ever face.

DAVID: My theories have to have flexibility. Dabbling cannot be absolutely ruled out.

dhw: Ah, good to hear that your fixed beliefs are flexible, apart from those we keep discussing under “Unanswered questions”!

dhw: Yes, I agree that the complexities require design, and I disagree with your authoritative statement that cell communities are incapable of it. You don’t know that, and nor do I. It’s a theory, also promulgated by Shapiro, following on from the findings of such scientific luminaries as Margulis and McClintock, who were pioneers in the field of cellular intelligence. I ended my post with three possible explanations, now bolded. I really don’t know why you consider the first to be more credible than the third.

DAVID: Shapiro and the others considered cellular intelligence to allow for minor adaptations. You are the one stretching it to major species modification. Not likely since so much advanced design is required.

dhw; Since both Shapiro and McClintock champion(ed) the concept of cellular intelligence, how do you think Shapiro’s “natural genetic engineering” works?

Natural genetic engineering - Wikipedia
https://en.wikipedia.org/wiki/Natural_genetic_engineering

Shapiro points out that multiple cellular systems can affect DNA in response to specific environmental stimuli. These "directed" changes stand in contrast to both the undirected mutations in the modern synthesis and (in Shapiro's interpretation) the ban on information flowing from the environment into the genome.
In the 1992 Genetica paper that introduced the concept, Shapiro begins by listing three lessons from molecular genetics:
• there is a surprising amount of genetic conservation across taxonomic boundaries,
• the mosaic structure of the genome results in multiple nonlocal genes having multiple phylogenic effects, and, drawing on the work of his friend and collaborator Barbara McClintock,
• the existence of multiple cellular mechanisms (including mobile genetic elements) that can restructure DNA.
From these, Shapiro concludes:
It can be argued that much of genome change in evolution results from a genetic engineering process utilizing the biochemical systems for mobilizing and reorganizing DNA structures present in living cells.[1]

All true, but only covers small modifications in his research which is limited within bacteria and nothing more. Please note that most scientific journals do not accept quotes from Wikipedia which is notoriously slanted by biases that are entered from a multitude of uncontrolled sources. But what you presented is OK.

Evolution: the newly-found bacterial role:

by dhw, Friday, August 16, 2019, 08:40 (1925 days ago) @ David Turell

DAVID: Shapiro and the others considered cellular intelligence to allow for minor adaptations. You are the one stretching it to major species modification. Not likely since so much advanced design is required.

dhw; Since both Shapiro and McClintock champion(ed) the concept of cellular intelligence, how do you think Shapiro’s “natural genetic engineering” works?

Natural genetic engineering - Wikipedia

https://en.wikipedia.org/wiki/Natural_genetic_engineering
Shapiro points out that multiple cellular systems can affect DNA in response to specific environmental stimuli. These "directed" changes stand in contrast to both the undirected mutations in the modern synthesis and (in Shapiro's interpretation) the ban on information flowing from the environment into the genome.
In the 1992 Genetica paper that introduced the concept, Shapiro begins by listing three lessons from molecular genetics:
• there is a surprising amount of genetic conservation across taxonomic boundaries,
• the mosaic structure of the genome results in multiple nonlocal genes having multiple phylogenic effects, and, drawing on the work of his friend and collaborator Barbara McClintock,
• the existence of multiple cellular mechanisms (including mobile genetic elements) that can restructure DNA.
From these, Shapiro concludes:
It can be argued that much of genome change in evolution results from a genetic engineering process utilizing the biochemical systems for mobilizing and reorganizing DNA structures present in living cells.[1]

DAVID: All true, but only covers small modifications in his research which is limited within bacteria and nothing more. Please note that most scientific journals do not accept quotes from Wikipedia which is notoriously slanted by biases that are entered from a multitude of uncontrolled sources. But what you presented is OK.

His theory is not confined to small modifications! Same source:
"Natural genetic engineering (NGE) is a class of process proposed by molecular biologist James Shapiro to account for novelty created in the course of biological evolution."

Novelty, not small modifications. But of course it’s an unproven theory – just as your divine preprogramming and dabbling is an unproven theory. You refuse to consider it, though, because it conflicts with your fixed belief.

Evolution: the newly-found bacterial role:

by David Turell @, Friday, August 16, 2019, 18:45 (1924 days ago) @ dhw

DAVID: Shapiro and the others considered cellular intelligence to allow for minor adaptations. You are the one stretching it to major species modification. Not likely since so much advanced design is required.

dhw; Since both Shapiro and McClintock champion(ed) the concept of cellular intelligence, how do you think Shapiro’s “natural genetic engineering” works?

Natural genetic engineering - Wikipedia

https://en.wikipedia.org/wiki/Natural_genetic_engineering
Shapiro points out that multiple cellular systems can affect DNA in response to specific environmental stimuli. These "directed" changes stand in contrast to both the undirected mutations in the modern synthesis and (in Shapiro's interpretation) the ban on information flowing from the environment into the genome.
In the 1992 Genetica paper that introduced the concept, Shapiro begins by listing three lessons from molecular genetics:
• there is a surprising amount of genetic conservation across taxonomic boundaries,
• the mosaic structure of the genome results in multiple nonlocal genes having multiple phylogenic effects, and, drawing on the work of his friend and collaborator Barbara McClintock,
• the existence of multiple cellular mechanisms (including mobile genetic elements) that can restructure DNA.
From these, Shapiro concludes:
It can be argued that much of genome change in evolution results from a genetic engineering process utilizing the biochemical systems for mobilizing and reorganizing DNA structures present in living cells.[1]

DAVID: All true, but only covers small modifications in his research which is limited within bacteria and nothing more. Please note that most scientific journals do not accept quotes from Wikipedia which is notoriously slanted by biases that are entered from a multitude of uncontrolled sources. But what you presented is OK.

dhw: His theory is not confined to small modifications! Same source:
"Natural genetic engineering (NGE) is a class of process proposed by molecular biologist James Shapiro to account for novelty created in the course of biological evolution."

All based on bacterial studies and therefore an unproven extrapolation. I've read the book.


dhw: Novelty, not small modifications. But of course it’s an unproven theory – just as your divine preprogramming and dabbling is an unproven theory. You refuse to consider it, though, because it conflicts with your fixed belief.

You are unfixed and I am fixed. That is why we debate.

Evolution: the newly-found bacterial role:

by dhw, Saturday, August 17, 2019, 11:07 (1923 days ago) @ David Turell

DAVID: All true, but only covers small modifications in his research which is limited within bacteria and nothing more. Please note that most scientific journals do not accept quotes from Wikipedia which is notoriously slanted by biases that are entered from a multitude of uncontrolled sources. But what you presented is OK.

dhw: His [Shapiro’s] theory is not confined to small modifications! Same source:
"Natural genetic engineering (NGE) is a class of process proposed by molecular biologist James Shapiro to account for novelty created in the course of biological evolution."

DAVID: All based on bacterial studies and therefore an unproven extrapolation. I've read the book.

Then you should have known that his theory was not confined to “small modifications” but to novelty, which is what enables evolution to progress. And I keep acknowledging, as below, that ALL the theories are unproven, including your own. If they were proven, they would be facts.

dhw: Novelty, not small modifications. But of course it’s an unproven theory – just as your divine preprogramming and dabbling is an unproven theory. You refuse to consider it, though, because it conflicts with your fixed belief.

DAVID: You are unfixed and I am fixed. That is why we debate.

On that we can agree!:-)

Evolution: the newly-found bacterial role:

by David Turell @, Saturday, August 17, 2019, 19:07 (1923 days ago) @ dhw

DAVID: All true, but only covers small modifications in his research which is limited within bacteria and nothing more. Please note that most scientific journals do not accept quotes from Wikipedia which is notoriously slanted by biases that are entered from a multitude of uncontrolled sources. But what you presented is OK.

dhw: His [Shapiro’s] theory is not confined to small modifications! Same source:
"Natural genetic engineering (NGE) is a class of process proposed by molecular biologist James Shapiro to account for novelty created in the course of biological evolution."

DAVID: All based on bacterial studies and therefore an unproven extrapolation. I've read the book.

dhw: Then you should have known that his theory was not confined to “small modifications” but to novelty, which is what enables evolution to progress. And I keep acknowledging, as below, that ALL the theories are unproven, including your own. If they were proven, they would be facts.

dhw: Novelty, not small modifications. But of course it’s an unproven theory – just as your divine preprogramming and dabbling is an unproven theory. You refuse to consider it, though, because it conflicts with your fixed belief.

DAVID: You are unfixed and I am fixed. That is why we debate.

dhw: On that we can agree!:-)

So the debate will continue :-|

Evolution: the newly-found bacterial gut role:

by David Turell @, Wednesday, October 30, 2019, 22:01 (1849 days ago) @ David Turell

Each person has his own biome in his gut:

https://phys.org/news/2019-10-survive-human-gut-bacteria-genetic.html

"Bacteria living in people's intestines pump out toxins to deter microbial intruders. But each person's gut comes with its own set of toxins—an individualized "passcode" microbes must solve to survive, scientists report October 30, 2019, in the journal Nature.

"The findings suggest that there's not a one-size-fits-all approach to probiotics or live biotherapeutics, the microbial supplements that promote the growth of healthy bacteria, says study coauthor Joseph Mougous, a Howard Hughes Medical Institute (HHMI) Investigator

***

{"The human gut is rife with bacteria. Feces contains about 100 billion bacterial cells per gram, and gut bacteria outnumber human cells 10 to 1. These microbes, collectively called the gut microbiome, take on all sorts of maintenance-type work, Mougous says. They digest food, keep the gut's surface intact, provide vitamins, and kick bad bacteria out. "The gut microbiome is very important for human health—that much we certainly know," he says.

"Over the last decade, Mougous's team has worked out the details of a bacterial defense mechanism called the type VI secretion system. It's like a molecular syringe that slams toxins into neighboring cells. The toxins break down cell walls, cleave membranes, and chew up cells' energy source. "They're pretty insidious," he says.

"Bacteria use immunity genes to neutralize these toxins and protect themselves. Invaders that lack the right genes get booted from the gut. Mougous's team had thought that toxin and immunity genes came together in pairs, like a lock and key. But an analysis of data from more than 1,000 human fecal samples revealed something surprising.

"Immunity genes from the gut bacteria Bacteroides fragilis vastly outnumbered toxin genes. All those extra immunity genes, the team discovered, actually belonged to other bacteria. Those bacteria had stolen B. fragilis's genes to protect themselves from its toxins. That means the genes must be crucial for bacteria to survive in the gut, Mougous says—something scientists hadn't known before.

"Mougous's team, including microbiologist Benjamin Ross, worked with UW's Elhanan Borenstein on the genomic analysis. Borenstein has since moved to Tel Aviv University, and Ross is now at Dartmouth College. "This collaboration was a lot of fun because it took both of our groups into new areas," Mougous says.

"Experiments in the lab showed that the immunity genes cluster together on stretches of DNA that can jump from bacterial strain to bacterial strain. In lab dishes and in living mice, bacteria given these genes immediately became resistant to B. fragilis's toxins.

"What's more, human fecal samples had unique combinations of toxin and immunity genes, the team found. "So what it takes to survive in one person's microbiome might not be the same in another person's microbiome," Mougous says."

Comment: Bacteria have been around ever since life started. Previous articles and this one show the important roles they still play. Start life and continue to help it.

Evolution: the newly-found bacterial role:

by David Turell @, Tuesday, May 12, 2020, 18:56 (1654 days ago) @ David Turell

They are here to stimulate the immune system, when it is not being stimulated, keeping it on the ready:

https://medicalxpress.com/news/2020-05-microbiome-immune.html

"Working alongside colleagues in Mainz, Bern, Hannover and Bonn, researchers ... were able to show how the microbiome helps to render the immune system capable of responding to pathogens. If microbiome-derived signals are absent, relevant mediators are not released, resulting in a failure to activate metabolic processes in certain immune cells. According to the researchers' report, which has been published in Cell, this leaves the relevant cells without the necessary fuel to mount an immune response.

***

"Presence of an infection triggers the body's immune response. A key role in this process is played by conventional dendritic cells (CDCs). These form part of the body's innate immune system and carry a range of pattern recognition receptors that enable them to detect invading pathogens quickly. The cells' initial response involves the release of cytokines, signaling proteins that attract immune cells to the site of infection. At the same time, these cells also use phagocytosis to engulf and digest invasive pathogens, after which they present individual particles as antigens on their cell surface. This, in turn, leads to the activation of T cells, which form part of the adaptive immune system, and results in a targeted immune response. In contrast, when T cell activation is triggered by CDCs presenting endogenous antigens, it leads to a faulty and undesirable immune response and results in autoimmune diseases.

"The team of researchers led by Prof. Diefenbach found that CDCs are incapable of triggering immune responses in sterile conditions (i.e., in germ-free mice). The researchers concluded that CDCs must receive information while the cell is in its basal state, which is characterized by the absence of infection, and that this information must derive from the microbiome. These microbiome-derived signals prime CDCs for a future response against pathogens.

"'We want to understand the nature of the microbiome's continuous effects on CDC function," says Prof. Diefenbach. "In this study, we were able to show that in their basal state, these specialist immune cells are subject to the uninterrupted microbiome-controlled signaling of type I interferons (IFN-I)."

"Interferons are cytokines, special signaling molecules known to play a role in antiviral activity. "Until now, we had known only little about the role of IFN-I in the basal state. CDCs that do not receive this IFN-I signaling during the basal state cannot fulfill the physiological functions they perform as part of the body's fight against pathogens," says the microbiologist. Study results suggest that the microbiome controls the immune system's fitness. It exerts this control by bringing the immune system to a state of 'readiness' in order to speed up its response to pathogens.

***

"Describing the researchers' observations, the study's first author, Laura Schaupp, says, "Interestingly, when we looked at CDCs from germ-free animals and those without IFN-I signaling, we were able to observe low levels of expression among genes involved in the mitochondrial respiratory chain. Further analyses revealed that the cellular metabolism of CDCs from germ-free animals is dysfunctional, making them unable to initiate an immune response. The cells effectively lack the fuel needed to respond to pathogens." This suggests that the microbiome is of crucial importance to the functioning of CDCs. It appears essential to the ability of CDCs to mount an effective response to bacterial or viral infections, including responses mediated by T cells."

Comment: We see an other reason why bacteria were at the start and are still here to manage readiness for immune systems, even when they are idle without a challenge. Looks like a great plan to me.

Evolution: ribosomes flexible, ancient

by David Turell @, Saturday, November 17, 2018, 19:10 (2196 days ago) @ David Turell

By cut and past this study altered ribosomes radically and they still worked with the conclusion they were very flexible at the start of life:

https://www.sciencedaily.com/releases/2018/11/181112095934.htm

"This experiment had a good chance of crashing. Instead, it delivered whopping evidence to corroborate the earliest evolution of the translational system, the mechanisms which make life out of our genes. The study swapped out all its magnesium, tabula rasa, and showed that the system, centering on the ribosome, would have thrived basically as it is today 4 billion years ago at the earliest foundations of life on Earth.

***

"In the system inside cells that translates genetic code into life, he replaced about 1,000 essential linchpins with primitive substitutes to see if the translational system would survive and function. It seemed impossible, yet it worked swimmingly, and Bray had compelling evidence that the great builder of proteins was active in the harsh conditions in which it evolved 4 billion years ago.

"The experiment's success reaffirmed the translational system's place at the earliest foundations of life on Earth.

"Every living thing exists because the translational system receives messages from DNA delivered to it by RNA and translates the messages into proteins. The system centers on a cellular machine called the ribosome, which is made of multiple large molecules of RNA and protein and is ubiquitous in life as we know it.

***

"In today's ribosome, and in the whole translational system, they are magnesium ions, and Bray's experiment replaced them all with iron ions and manganese ions, which were overabundant on primordial Earth. Williams and Jennifer Glass, the principal investigators in the new study, also had their doubts this was doable.

"I thought, 'It's not going to work, but we might as well try the moonshot'," said Williams who has led similar work before but on simpler molecules. "The fact that swapping out all the magnesium in the translational system actually worked was mind-boggling."

"That's because in living systems today, magnesium helps shape ribosomes by holding them together. Magnesium is also needed for some 20 additional enzymes of the translational system. It's one reason why dietary magnesium (Mg) is so important.

"The number of different things magnesium does in the ribosome and in the translational system is just enormous," said Williams. "There are so many types of catalytic activities in translation, and magnesium is involved in almost all of them."

***

"Bray incubated ribosomes in the presence of magnesium, iron, or manganese inside a special chamber with an artificial atmosphere devoid of oxygen, like the Earth four billion years ago.

"He found that the magnesium replacement went far beyond atoms in the ribosome.
"Surrounding the ribosome is also a huge cloud of magnesium atoms. It's called an atmosphere, or shell, and engulfs it completely. I replaced everything, including that, and the whole system still worked."

"Eons down the road, the evolution of the translational system in the presence of magnesium may have given it an adaptive advantage. As oxygen levels on Earth rose, binding up free manganese and iron, and making them less available to biology, magnesium probably comfortably assumed the thousands of roles it occupies in the translational system today.

Comment: This theoretical conclusion from this study supports the concept of initial design which was flexible enough to use what metals were available at different points in the Earth's evolution

Evolution: very early whale with useful legs

by David Turell @, Thursday, April 04, 2019, 22:34 (2058 days ago) @ dhw

Found in Peru and dates from 43 million years ago:

https://www.newscientist.com/article/2198740-amazing-four-legged-fossil-shows-how-walki...

"A fossil of a 43-million-year-old whale that was still able to walk on land on four legs has been found in Peru. It is the first amphibious whale found in the southern hemisphere, and suggests that whales managed to swim across the South Atlantic early in their evolution.

"The 3-metre-long animal looked a bit like an otter or a beaver, with four legs and a large tail for swimming.

“'It was still capable of bearing its weight on its limbs,” says Olivier Lambert at the Royal Belgian Institute of Natural Sciences, a member of the team that made the discovery. “It was intermediate between fully walking and fully aquatic.”

"Whales started evolving in South Asia around 50 million years ago, from a dog-like creature related to deer and hippos. As they became more aquatic, these early whales began spreading along coasts.

"Fossils of semi-aquatic whales have recently been found in West Africa. The latest discovery suggests that these early whales managed to swim from there to South America at least 43 million years ago.

"At the time, the West African coast was just 1200 kilometres from what is now Brazil, and there was a westward current. But it would still have taken a week or two to make the crossing. That may suggest that these whales were already capable of surviving without fresh water, and of sleeping at sea.

"They soon reached North America too, where fossil teeth dating to around 41 million years ago have been found.

"'The last common ancestor of all modern whales and dolphins lived 37 million years ago, so the new discovery may be one of the ancestors of modern whales. However, it is far more likely to be a cousin – a member of a side branch that died off," says Lambert."

Comment: Being able to handle both terrestrial and aqueous life gave it access to both styles of living as predators. I still want to know why they became totally aquatic with all the attendant physiological adaptations that were required to be solved.

Evolution: very early whale with useful legs

by dhw, Friday, April 05, 2019, 09:52 (2058 days ago) @ David Turell

DAVID: Being able to handle both terrestrial and aqueous life gave it access to both styles of living as predators. I still want to know why they became totally aquatic with all the attendant physiological adaptations that were required to be solved.

Yet another link in the whale chain. May I suggest that over the course of time, the whale’s ancestors found life at sea to be more productive than life on land, and consequently the cell communities that form legs restructured themselves to form flippers, which are better adapted to life in the water. All the other changes would have taken place in the same way and for the same reason. Too obvious? I find this considerably more convincing than the theory that your God changed legs into flippers before pre-whales entered the water, and I would also like to know why he left these particular pre-whales with legs but gave them a tail.

Thank you for all the other articles. I don’t feel that there is any need for me to comment, other than to register my appreciation for this ongoing education.

Evolution: very early whale with useful legs

by David Turell @, Friday, April 05, 2019, 15:06 (2057 days ago) @ dhw

DAVID: Being able to handle both terrestrial and aqueous life gave it access to both styles of living as predators. I still want to know why they became totally aquatic with all the attendant physiological adaptations that were required to be solved.

dhw: Yet another link in the whale chain. May I suggest that over the course of time, the whale’s ancestors found life at sea to be more productive than life on land, and consequently the cell communities that form legs restructured themselves to form flippers, which are better adapted to life in the water. All the other changes would have taken place in the same way and for the same reason. Too obvious? I find this considerably more convincing than the theory that your God changed legs into flippers before pre-whales entered the water, and I would also like to know why he left these particular pre-whales with legs but gave them a tail.

Thank you for all the other articles. I don’t feel that there is any need for me to comment, other than to register my appreciation for this ongoing education.

Yes, it is a fascinating transitional form, but never answers my eternal question: Why bother with all the attendant physiological changes required to be invented or designed.

Evolution: whale adaptive losses and changes

by David Turell @, Friday, September 27, 2019, 00:27 (1883 days ago) @ David Turell

It is quite a list:

https://cosmosmagazine.com/biology/why-don-t-whales-have-saliva?utm_source=Cosmos+-+Mas...

On land, hair is often a necessary part of an organism’s heat regulation strategy, but in water it can cause drag, leading to inefficient swimming and all that comes with it, such as poor predator avoidance. In this case, the loss of genes producing keratin actually helped to adapt to the new environment.

In this study, the scientists discovered 85 genes that had been deactivated by mutations in both extant cetacean clades; odontocetes (toothed whales) and mysticetes (baleen whales).

***

Of the 85 genes identified, 62 have never been reported and the researchers have identified eight genes specifically that are likely to have been involved in the adaptation of the stem lineage to a fully aquatic lifestyle. These are implicated in a wide range of traits, from sleep to saliva.

Two of the lost genes, called F12 and KLKB1, were associated with blood coagulation. While these are vital on land, in the water they could lead to dangerous clotting inside the blood vessels, known as thrombosis.

F12, for example, causes clotting when it encounters foreign surfaces in the body. Losing this gene may have been beneficial for cetaceans because “nitrogen microbubbles, which readily form in the blood upon repeated breath-hold diving, may act as foreign F12-activating surfaces entailing harmful thrombus formation.”

Other lost genes help to reduce the chance of genetic mutation caused by DNA repair mechanisms working to rectify damage done by the high oxygen levels in the blood necessary for deep diving.

Loss of the genes MAP3K19 and SEC14L3 might help prevent scarring and the resulting loss of elasticity in cetacean lungs which, unlike humans and other terrestrial mammals, collapse during deep diving and explosively expand upon resurfacing. This elasticity helps cetaceans to renew 90% of the air in their lungs in a single breath.

The gene SLC4A9 is partly responsible for the production of saliva in terrestrial mammals, but your average dolphin or whale has little need of spittle which is why it has been lost in cetaceans.

Saliva helps to lubricate the mouth, break down starch and facilitate taste, all of which are less important in an aquatic environment. Who needs oral lubrication when your meal comes with a mouthful of seawater?

Beyond that, write the authors “the hyperosmotic marine environment necessitates strict housekeeping of freshwater resources in marine species; thus, freshwater loss via saliva secretion may be detrimental.”

Cetacean ancestors, as mammals who need air to breathe, also faced issues with regards to the mammalian sleep cycle. Just as humans tend to avoid napping face-down in puddles, cetaceans can’t just fall asleep in the ocean.

So the creatures of the cetacean stem lineage had to find a way to balance the need for sleep with the restriction of their new aquatic environment. As a result, they have a unique adaptation called ‘unihemispheric sleep’, which “allows one brain hemisphere to sleep while the awake hemisphere coordinates movement for surfacing.”

This adaptation was facilitated by the loss of several genes involved in the production and reception of the sleep hormone melatonin. This helped to “decouple sleep-wake patterns from daytime,” which, argue the researchers, “may have been a precondition to adopt unihemispheric sleep as the exclusive sleep pattern.” (my bold)

Comment: Interesting complex changes, and one can imagine some of these adaptations while learning to become aquatic, but note my bold. How does a whale learn to sleep with half a brain active while living in the water, without drowning during the process of adaptation? For me god prepared them.

Evolution: whale adaptive losses and changes

by dhw, Friday, September 27, 2019, 18:40 (1882 days ago) @ David Turell

QUOTE: “So the creatures of the cetacean stem lineage had to find a way to balance the need for sleep with the restriction of their new aquatic environment. As a result, they have a unique adaptation called ‘unihemispheric sleep’, which “allows one brain hemisphere to sleep while the awake hemisphere coordinates movement for surfacing.”
This adaptation was facilitated by the loss of several genes involved in the production and reception of the sleep hormone melatonin. This helped to “decouple sleep-wake patterns from daytime,” which, argue the researchers, “may have been a precondition to adopt unihemispheric sleep as the exclusive sleep pattern.
[/b]” (DAVID’s bold)

DAVID: Interesting complex changes, and one can imagine some of these adaptations while learning to become aquatic, but note my bold. How does a whale learn to sleep with half a brain active while living in the water, without drowning during the process of adaptation? For me god prepared them.

Nobody knows, but I suggest that, as with every other adaptation, the cells worked out a solution to improve performance or to cope with new conditions. It’s not beyond the scope of reason that initially some whales did drown if they strayed too far away from land, and others swam till they found dry land to sleep on. Loss of melatonin would then be the result of training the body to do without sleep for long periods. But the eventual half and half compromise would be the solution that worked best and hence survived by natural selection. Certainly no more fanciful than your God preprogramming the first cells with the whole history of whale stages, bacteria solutions, monarch butterfly migration, weaverbird nesting etc., all to cover the time he’d decided to wait before pursuing his one and only goal!

Evolution: whale adaptive losses and changes

by David Turell @, Friday, September 27, 2019, 22:50 (1882 days ago) @ dhw

QUOTE: “So the creatures of the cetacean stem lineage had to find a way to balance the need for sleep with the restriction of their new aquatic environment. As a result, they have a unique adaptation called ‘unihemispheric sleep’, which “allows one brain hemisphere to sleep while the awake hemisphere coordinates movement for surfacing.”
This adaptation was facilitated by the loss of several genes involved in the production and reception of the sleep hormone melatonin. This helped to “decouple sleep-wake patterns from daytime,” which, argue the researchers, “may have been a precondition to adopt unihemispheric sleep as the exclusive sleep pattern.
[/b]” (DAVID’s bold)

DAVID: Interesting complex changes, and one can imagine some of these adaptations while learning to become aquatic, but note my bold. How does a whale learn to sleep with half a brain active while living in the water, without drowning during the process of adaptation? For me God prepared them.

dhw: Nobody knows, but I suggest that, as with every other adaptation, the cells worked out a solution to improve performance or to cope with new conditions. It’s not beyond the scope of reason that initially some whales did drown if they strayed too far away from land, and others swam till they found dry land to sleep on. Loss of melatonin would then be the result of training the body to do without sleep for long periods. But the eventual half and half compromise would be the solution that worked best and hence survived by natural selection. Certainly no more fanciful than your God preprogramming the first cells with the whole history of whale stages, bacteria solutions, monarch butterfly migration, weaverbird nesting etc., all to cover the time he’d decided to wait before pursuing his one and only goal!

Your explanation tells us some just-so stories. Finding dry land does not explain what God must have programmed. How did whales tell melatonin to go away? Same issue: why bother with whales in the first place? Answer, because they are a major part of of the ecosystem of the ocean

Evolution: whale adaptive losses and changes

by dhw, Saturday, September 28, 2019, 10:58 (1881 days ago) @ David Turell

DAVID: Interesting complex changes, and one can imagine some of these adaptations while learning to become aquatic, but note my bold. How does a whale learn to sleep with half a brain active while living in the water, without drowning during the process of adaptation? For me God prepared them.

dhw: Nobody knows, but I suggest that, as with every other adaptation, the cells worked out a solution to improve performance or to cope with new conditions. It’s not beyond the scope of reason that initially some whales did drown if they strayed too far away from land, and others swam till they found dry land to sleep on. Loss of melatonin would then be the result of training the body to do without sleep for long periods. But the eventual half and half compromise would be the solution that worked best and hence survived by natural selection. Certainly no more fanciful than your God preprogramming the first cells with the whole history of whale stages, bacteria solutions, monarch butterfly migration, weaverbird nesting etc., all to cover the time he’d decided to wait before pursuing his one and only goal!

DAVID: Your explanation tells us some just-so stories. Finding dry land does not explain what God must have programmed.

That is your “just-so story”, and I don’t know where you get your “must have” from! In any case, why is it “just-so” that initially some whales would have drowned but others could have found a place to sleep?

DAVID: How did whales tell melatonin to go away?

They didn’t. It went away of its own accord when its sleep-inducing properties were no longer effective or needed, just as the flipper would have lost its legginess, and the toothless whale would have lost its teeth.

DAVID: Same issue: why bother with whales in the first place? Answer, because they are a major part of the ecosystem of the ocean.

Every organism plays/played a part in every ecosystem extant and extinct. The question is why your God bothered if the only species he wanted was H. sapiens. But of course that is “explained” by your God’s inexplicable decision not to design the only species he wanted for 3.X billion years, and therefore having or needing to invent all sorts of organisms to eat or be eaten by one another in order to “cover the time”.

Evolution: whale adaptive losses and changes

by David Turell @, Saturday, September 28, 2019, 18:30 (1881 days ago) @ dhw

DAVID: Interesting complex changes, and one can imagine some of these adaptations while learning to become aquatic, but note my bold. How does a whale learn to sleep with half a brain active while living in the water, without drowning during the process of adaptation? For me God prepared them.

dhw: Nobody knows, but I suggest that, as with every other adaptation, the cells worked out a solution to improve performance or to cope with new conditions. It’s not beyond the scope of reason that initially some whales did drown if they strayed too far away from land, and others swam till they found dry land to sleep on. Loss of melatonin would then be the result of training the body to do without sleep for long periods. But the eventual half and half compromise would be the solution that worked best and hence survived by natural selection. Certainly no more fanciful than your God preprogramming the first cells with the whole history of whale stages, bacteria solutions, monarch butterfly migration, weaverbird nesting etc., all to cover the time he’d decided to wait before pursuing his one and only goal!

DAVID: Your explanation tells us some just-so stories. Finding dry land does not explain what God must have programmed.

dhw: That is your “just-so story”, and I don’t know where you get your “must have” from! In any case, why is it “just-so” that initially some whales would have drowned but others could have found a place to sleep?

The point is not finding a place to sleep! It is how do you learn to sleep while in a total water environment? The result is half a brain asleep, no melatonin, and still take a breath now and then. For me it is designed from the beginning. logically, it cannot be learned as a gradual adaptation.


DAVID: How did whales tell melatonin to go away?

dhw: They didn’t. It went away of its own accord when its sleep-inducing properties were no longer effective or needed, just as the flipper would have lost its legginess, and the toothless whale would have lost its teeth.

Your faith in gradual adaptations is amazing.


DAVID: Same issue: why bother with whales in the first place? Answer, because they are a major part of the ecosystem of the ocean.

dhw: Every organism plays/played a part in every ecosystem extant and extinct. The question is why your God bothered if the only species he wanted was H. sapiens. But of course that is “explained” by your God’s inexplicable decision not to design the only species he wanted for 3.X billion years, and therefore having or needing to invent all sorts of organisms to eat or be eaten by one another in order to “cover the time”.

You try to make God logical to fit your human thinking, It doesn't work.

Evolution: whale adaptive losses and changes

by dhw, Sunday, September 29, 2019, 08:43 (1881 days ago) @ David Turell

DAVID: Interesting complex changes, and one can imagine some of these adaptations while learning to become aquatic, but note my bold. How does a whale learn to sleep with half a brain active while living in the water, without drowning during the process of adaptation? For me God prepared them.

dhw: Nobody knows, but I suggest that, as with every other adaptation, the cells worked out a solution to improve performance or to cope with new conditions. It’s not beyond the scope of reason that initially some whales did drown if they strayed too far away from land, and others swam till they found dry land to sleep on. Loss of melatonin would then be the result of training the body to do without sleep for long periods. But the eventual half and half compromise would be the solution that worked best and hence survived by natural selection. Certainly no more fanciful than your God preprogramming the first cells with the whole history of whale stages, bacteria solutions, monarch butterfly migration, weaverbird nesting etc., all to cover the time he’d decided to wait before pursuing his one and only goal!

DAVID: Your explanation tells us some just-so stories. Finding dry land does not explain what God must have programmed.

dhw: That is your “just-so story”, and I don’t know where you get your “must have” from! In any case, why is it “just-so” that initially some whales would have drowned but others could have found a place to sleep?

DAVID:The point is not finding a place to sleep! It is how do you learn to sleep while in a total water environment? The result is half a brain asleep, no melatonin, and still take a breath now and then. For me it is designed from the beginning. logically, it cannot be learned as a gradual adaptation.

One moment you have your God taking 2O million years to develop sapiens’ vertebrae because it had to be done step by step, and the next you have him either coming down from heaven and literally overnight changing every sleepy pre-whale into a half-sleepy whale, or he provided the first cells with a programme to accomplish the same operation. And this was done because he had to cover the time he had decided to take before designing H. sapiens bit by bit. No wonder you have come up with the following conclusion:

DAVID: You try to make God logical to fit your human thinking, It doesn't work.

Correction: you try to make God illogical to fit your fixed belief in his purpose and method of achieving that purpose. So be it, but please don’t tell us that your theory is logical because it fits in with God’s illogicality!

Evolution: whale adaptive losses and changes

by David Turell @, Sunday, September 29, 2019, 19:43 (1880 days ago) @ dhw

DAVID: Interesting complex changes, and one can imagine some of these adaptations while learning to become aquatic, but note my bold. How does a whale learn to sleep with half a brain active while living in the water, without drowning during the process of adaptation? For me God prepared them.

dhw: Nobody knows, but I suggest that, as with every other adaptation, the cells worked out a solution to improve performance or to cope with new conditions. It’s not beyond the scope of reason that initially some whales did drown if they strayed too far away from land, and others swam till they found dry land to sleep on. Loss of melatonin would then be the result of training the body to do without sleep for long periods. But the eventual half and half compromise would be the solution that worked best and hence survived by natural selection. Certainly no more fanciful than your God preprogramming the first cells with the whole history of whale stages, bacteria solutions, monarch butterfly migration, weaverbird nesting etc., all to cover the time he’d decided to wait before pursuing his one and only goal!

DAVID: Your explanation tells us some just-so stories. Finding dry land does not explain what God must have programmed.

dhw: That is your “just-so story”, and I don’t know where you get your “must have” from! In any case, why is it “just-so” that initially some whales would have drowned but others could have found a place to sleep?

DAVID:The point is not finding a place to sleep! It is how do you learn to sleep while in a total water environment? The result is half a brain asleep, no melatonin, and still take a breath now and then. For me it is designed from the beginning. logically, it cannot be learned as a gradual adaptation.

dhw: One moment you have your God taking 2O million years to develop sapiens’ vertebrae because it had to be done step by step, and the next you have him either coming down from heaven and literally overnight changing every sleepy pre-whale into a half-sleepy whale, or he provided the first cells with a programme to accomplish the same operation. And this was done because he had to cover the time he had decided to take before designing H. sapiens bit by bit. No wonder you have come up with the following conclusion:

DAVID: You try to make God logical to fit your human thinking, It doesn't work.

dhw: Correction: you try to make God illogical to fit your fixed belief in his purpose and method of achieving that purpose. So be it, but please don’t tell us that your theory is logical because it fits in with God’s illogicality!

God is not illogical. As the Creator, He does what He wants, making big or small steps, and we see the results in the history, which we then can try to interpret.

Evolution: whale echolocation ability

by David Turell @, Friday, November 01, 2019, 21:19 (1847 days ago) @ David Turell

It is puffs of air, not causing much energy:

https://phys.org/news/2019-11-echolocation-cheap-deep-diving-whales.html

"Many whales and dolphins, including the champion deep-diving beaked whales, use echolocation, the ability to locate objects by reflected sound, to find food in the dark of the deep ocean. Scientists have not been able to agree on how much energy this remarkable sensing ability takes, until now.

***

"In a throwback to terrestrial ancestors, whales use air to make their intense echolocation click sounds and this raises a problem for deep divers. Air compresses with depth so that at 700m deep, where pilot whales hunt, a lung-full of air has shrunk to 1.5% of its volume. But the new study shows that pilot whales use tiny amounts of air to make each click so this volume goes a long way. Even so, whales need to capture the air used by each click and recycle it, like a SCUBA rebreather, to be able to echolocate throughout their dives.

***

"To rise to this challenge, the international team attached miniature computers to whales with suction cups to record the close-in sound of the echolocation clicks.

"Dr. Mark Johnson, a researcher at the Sea Mammal Research Unit at the University of St Andrews, commented: "There was a eureka moment when we realized that the sound of each click changes gradually as whales echolocate depending on how much air is used."

"Professor Peter Madsen from the Department of Bioscience at Aarhus University added: "This meant that we could measure for the first time just how little air whales use to make each click. Even though these whales can detect prey at tens or even hundreds of meters, the small air volumes mean that echolocation doesn't take much energy."

"To study deep-diving pilot whales, the team went to Tenerife in the Canary Islands. Dr. Natacha Aguilar de Soto of the University of La Laguna, a co-author on the paper, said: "This study gives us a glimpse of the incredible evolutionary developments that allow pilot whales to hunt efficiently in the dark. But their reliance on sound makes them vulnerable to the noise from boats that we are adding to the ocean.'"

Comment: A very clever adaptation using land-based air breathing. Note the illustrated mechanism diagram. Another complex adaptation which makes me wonder, why bother to enter the water.

Evolution: blue whale adaptive cardiac changes

by David Turell @, Tuesday, November 26, 2019, 01:52 (1823 days ago) @ David Turell

It is well known from previous whale studies that the bigger whales have slower heart beats. I learned this while still a fellow in cardiology. Thsi study about a blue whale illustrates another of the intense complications a whale designer has to overcome:

https://cosmosmagazine.com/biology/scientists-record-a-blue-whale-s-heartbeat?utm_sourc...


"Scientists have recorded the heart rate of a blue whale (Balaenoptera musculus) in the wild and found considerable extremes in how fast it beats.

"When the whale dove for food, its heart rate dropped as low as two beats per minute, but back at the water’s surface it sped up to nearly 40.

"This suggests it is working at its limit, write Jeremy Goldbogen, from Stanford University,

***

"And it could explain why the world’s largest animal – with a heart weighing as much as a car – doesn’t get any bigger. Its heart wouldn’t be able to sustain higher energy needs.

"Body size is intimately related to physiological functions, an observation known as allometry.

"The quest to understand this has led researchers like Goldbogen and colleagues to explore the limits of body mass.

“From the smallest shrews to the largest whales, physiological performance at the extremes may shed light on constraints to body size,” they write.

***

"Once they managed to decipher the data, the researchers found the lowest rate averaged four to eight beats per minute, up to 50% lower than predicted. The upper rate averaged 25 to 37 beats, nearly outpacing predictions.

"When blue whales dive for krill, their main food source, their heart slows down to lower the rate of oxygen store depletion as well as its own oxygen needs.

"Goldbogen and colleagues found that the extremely low rate at the bottom of the dive increased by 2.5-fold as the whale powerfully ascended in a feeding lunge, then gradually decreased while it glided to filter the water out from the catch.

"It rose to near maximum capacity when the whale resurfaced to replenish its oxygen stores.
The researchers think this explains why the whale’s heart has a high yielding, stretchy aortic arch, to accommodate blood pumped out by the heart and keep it flowing between beats."

Comment: This is a huge whale. So a huge heart is required. But the circulatory changes in heart rate are vital to this animal's life style. Note the amazingly different aortic arch construction. What is also amazing is that they grew to this size from smaller whales to become the largest animal ever on the planet. Since there are eight to nine stages in whale development from land animals, how did this happen? Those eight to nine stages are fossil gaps. Each larger size required more and more cardiac and circulatory changes. We know humans can adapt to a small degree to deep diving. I presented studies here. Only design can do this. By the way the article notes heart rate is related to body size. A hummingbird's heart can reach 1,000 per minute!

Evolution: new transitional whale

by David Turell @, Thursday, December 12, 2019, 15:13 (1806 days ago) @ dhw

There were transitional changes in the spine/hip area:

https://www.smithsonianmag.com/science-nature/ancient-whale-fossil-helps-detail-how-mam...

"Whales don’t swim like fish do. Instead of moving their tales side-to-side like a shark or a sunfish, the marine mammals pump their tails up-and-down to propel themselves forward. But over 50 million years ago, the earliest whales had legs and could walk on land. Adapting to life in the sea required a new way of moving, and a fossil uncovered in Egypt helps estimate the time when whales became primarily tail-powered swimmers.

***

"All told, the paleontologists uncovered almost the entire spine, part of the skull, and pieces of the arms and legs. “It was very clear from the shape and the size of the vertebrae and appendages that this whale is new in this area,” Zalmout says. Further study indicated that the mammal was a species not seen anywhere else in the world.

"Named Aegicetus gehennae, the ancient swimmer stands out from others found in Wadi Al-Hitan, which fall into one of two groups. Some earlier whales could swim with a combination of paddling limbs and undulating their spines, not unlike otters. Other whales, like Basilosaurus, lived in the sea full time and swam with tails only. Aegicetus fits between the two, representing a moment when whales were just switching to exclusively tail-driven locomotion.

***

"The key feature in this fossil, Zalmout and co-authors point out, is the relationship between the hips and the spine. The earliest whales had hips attached to the spine, just like any terrestrial mammal. This configuration helped the hind limbs support the animal’s weight on land. But in Aegicetus and other whales that came later, the hips are decoupled from the spine and suspended by the flesh of the body. The tight fusion of vertebrae at the hip-spine connection—called the sacrum—also became unfused and more flexible. These whales could no longer paddle with their legs and relied more on undulating their spines to move through the water. The shift indicates two things: that these whales were spending most, if not all, of their time in the water where weight-supporting legs weren’t needed, and that these beasts swam by principally using their tails.

"Not that Aegicetus was much like a modern orca or sperm whale. The fossil whale, which weighed almost a ton (or about a sixth the weight of the biggest orcas), still had jaws set with different types of teeth instead of the simple cones of today’s dolphins. Nor did Aegicetus swim just like its living relatives."

Comment: Another partial step as whales adapted more fully to living in water, which required an enormous number of physical and physiological changes.

Evolution: food supply limits whale size

by David Turell @, Thursday, December 12, 2019, 20:08 (1806 days ago) @ David Turell

It seems to depend on being able to eat enough:

https://phys.org/news/2019-12-limits-ocean-heavyweights-prey-curb.html

"'Blue whales and sperm whales are not just kind of big," said Nicholas Pyenson, curator of fossil marine mammals at the Smithsonian's National Museum of Natural History. "They are among the biggest animals ever to have evolved. They rival and, in some cases, exceed the heaviest dinosaurs. That's pretty spectacular. But why aren't they bigger?"

***

"'Energy is a key currency for all life, and we wanted to know how energy gain compares to energy use in foraging whales with different body sizes and feeding strategies," Goldbogen said. "The ratio of energy gain relative to energy use reveals a whale's foraging efficiency and that provides clues as to why different whales are big and why they aren't bigger."
The relationship between body size and energetic payoff, they found, depended on what feeding strategy a whale had evolved to use—whether a whale was a filter feeder that gulps down schools of prey and strains them from ocean water in their mouth or, instead, a toothed hunter that catches prey individually.

"Blue whales, humpbacks and other filter-feeding whales use baleen—rows of flexible hair-like plates in their mouths—to strain krill and other small prey from ocean water. They seek out dense patches of their prey and almost always, the data showed, consume more calories than they expend when they feed. For filter-feeding whales, large size is no impediment to foraging: blue whales, fin whales and humpback whales, the largest whales in this study, achieved greater energy payoff during feeding events than any other whale in the study.

"Toothed whales, instead, use echolocation to forage and are limited to feeding on one prey target at a time. They must also dive deeper than other whales to find the largest and most abundant prey, like deep-sea squid and fish. Few other warm-blooded predators can access the parts of the ocean where large toothed whales feed. Below 1,000 feet, Pyenson said, "there's nothing else down there except all the squid you can eat." But squid must be chased, and that, the data showed, takes a lot of energy—especially for the biggest toothed whales. In some cases, the largest toothed whales did not eat enough food during a dive to make up for the energy they spent getting there. "They literally can't eat enough to achieve a higher energetic payoff before they have to return to the surface and breathe," Pyenson said.

"Sperm whales, which can be up to 60 feet long, are not only larger than any other of today's toothed whales, but are also bigger than all of their fossil ancestors. That makes sense, Pyenson said, because based on the relative energy efficiencies that the team calculated for different-sized toothed whales, "being a sperm whale today is really pushing a serious biological limit." The team's calculations suggest that sperm whales would not be able to find enough of the largest squid prey to maintain their body size if they were any larger—there simply are not enough large squid in the ocean to sustain bigger sperm whales.

"In contrast, large filter-feeding whales are not limited in their body size by the availability of their prey in the same way as toothed whales. Filter-feeding whales feed on small but very abundant krill prey that flourish at high population densities for short periods of time in specific parts of the world. As a result, Goldbogen, Pyenson and colleagues speculate that the seasonal availability of their abundant prey is what ultimately limits size in today's filter-feeding ocean giants like fin whales and blue whales.

"'The largest baleen whale species must reap the energy gains of krill patches in only a few of the most productive summer months at high latitudes," Goldbogen said. "Highly efficient filter-feeding strategies mean that these whales can build up fat stores that can then power their migrations across ocean basins to breeding grounds at lower latitudes that are leaner and provide much less food."

"The new study underscores the precarious position that all whales hold within their ecosystems. "You have to wonder just how perilous it is for whales living on an energetic knife's edge," Pyenson said—particularly in the face of climate change, overfishing and other threats to the oceans.

"If you're a blue whale and your only prey item is krill, and something causes krill populations to go into decline, then you are at an evolutionary dead end because you would not be able to eat enough to sustain yourself," he said. "It's a good reason for us to try to better understand these predator-prey relationships.'" (my bold)

Comment: Very educational study of whale size limits. They can evolve to a dangerous size for their continuing existence. My bold is a major point. Top predators control ecosystems unless or until they eat themselves out of a job, or prey disappear. The bush of life requires active econiches/systems

Evolution: possible role of stem cells (promised find)

by David Turell @, Thursday, December 12, 2019, 20:40 (1806 days ago) @ David Turell

Special different stem cells may have driven human brain size and specialization evolution:

https://www.ucsf.edu/news/2015/09/131646/stem-cell-research-hints-evolution-human-brain

"The human cerebral cortex contains 16 billion neurons, wired together into arcane, layered circuits responsible for everything from our ability to walk and talk to our sense of nostalgia and drive to dream of the future. In the course of human evolution, the cortex has expanded as much as 1,000-fold, but how this occurred is still a mystery to scientists.

"Now, researchers at UC San Francisco have succeeded in mapping the genetic signature of a unique group of stem cells in the human brain that seem to generate most of the neurons in our massive cerebral cortex.

***

"Until recently, most of what scientists knew about this process came from studies of model organisms such as mice, where nearly all neurons are produced by stem cells called ventricular radial glia (vRGs) that inhabit a fertile layer of tissue deep in the brain called the ventricular zone (VZ). But recent insights suggested that the development of the human cortex might have some additional wrinkles.

"In 2010, Kriegstein’s lab discovered a new type of neural stem cell in the human brain, which they dubbed outer radial glia (oRGs) because these cells reside farther away from the nurturing ventricles, in an outer layer of the subventricular zone (oSVZ). To the researchers’ surprise, further investigations revealed that during the peak of cortical development in humans, most of the neuron production was happening in the oSVZ rather than the familiar VZ.

***

"The gene activity profiles also provided several novel insights into the biology of outer radial glia. For example, researchers had previously been puzzled as to how oRG cells could maintain their generative vitality so far away from the nurturing VZ. “In the mouse, as cells move away from the ventricles, they lose their ability to differentiate into neurons,” Kriegstein explained.

"But the new data reveals that oRGs bring a support group with them: The cells express genes for surface markers and molecular signals that enhance their own ability to proliferate, the researchers found.
'
“This is a surprising new feature of their biology,” Pollen said. “They generate their own stem cell niche.”

"The researchers used their new molecular insights to isolate oRGs in culture for the first time, and showed that these cells are prolific neuron factories. In contrast to mouse vRGs, which produce 10 to 100 daughter cells during brain development, a single human oRG can produce thousands of daughter neurons, as well as glial cells—non-neuronal brain cells increasingly recognized as being responsible for a broad array of maintenance functions in the brain.

"The discovery of human oRGs’ self-renewing niche and remarkable generative capacity reinforces the idea that these cells may have been responsible for the expansion of the cerebral cortex in our primate ancestors, the researchers said."

Comment: It is logical that stem cells must play a major role in speciation, since they are the creators of functional cells. We still don't understand why or how the new stem cells arrived on the scene.

Evolution: food supply limits whale size

by dhw, Friday, December 13, 2019, 12:43 (1805 days ago) @ David Turell

DAVID (under “new transitional whale”):There were transitional changes in the spine/hip area:
https://www.smithsonianmag.com/science-nature/ancient-whale-fossil-helps-detail-how-mam...

DAVID: Another partial step as whales adapted more fully to living in water, which required an enormous number of physical and physiological changes.

So would you say these enormous physical changes were the result of whales adapting itty-bitty more fully to living in water, or do you think your God preprogrammed each individual change 3.8 billion years ago or kept popping in to do a new dabble in his effort to cover the time until he turned to the itty-bitty evolution of H. sapiens?

QUOTE: "If you're a blue whale and your only prey item is krill, and something causes krill populations to go into decline, then you are at an evolutionary dead end because you would not be able to eat enough to sustain yourself," he said. "It's a good reason for us to try to better understand these predator-prey relationships.'" (David’s bold)

DAVID: Very educational study of whale size limits. They can evolve to a dangerous size for their continuing existence. My bold is a major point. Top predators control ecosystems unless or until they eat themselves out of a job, or prey disappear. The bush of life requires active econiches/systems.

Of course it does. Every single organism that has ever lived depends or depended on econiches that provide food. Could anyone possibly disagree? (NB this subject has nothing whatsoever to do with the theory that a God personally designed every econiche for the sole purpose of keeping life going until he fulfilled his one and only purpose of designing H. sapiens. Thank you for keeping the two subjects separate.)

Evolution: food supply limits whale size

by David Turell @, Friday, December 13, 2019, 13:52 (1805 days ago) @ dhw

DAVID (under “new transitional whale”):There were transitional changes in the spine/hip area:
https://www.smithsonianmag.com/science-nature/ancient-whale-fossil-helps-detail-how-mam...

DAVID: Another partial step as whales adapted more fully to living in water, which required an enormous number of physical and physiological changes.

dhw: So would you say these enormous physical changes were the result of whales adapting itty-bitty more fully to living in water, or do you think your God preprogrammed each individual change 3.8 billion years ago or kept popping in to do a new dabble in his effort to cover the time until he turned to the itty-bitty evolution of H. sapiens?

What I believe is God guided evolution constantly or with much pre-programming or pre-planning.


QUOTE: "If you're a blue whale and your only prey item is krill, and something causes krill populations to go into decline, then you are at an evolutionary dead end because you would not be able to eat enough to sustain yourself," he said. "It's a good reason for us to try to better understand these predator-prey relationships.'" (David’s bold)

DAVID: Very educational study of whale size limits. They can evolve to a dangerous size for their continuing existence. My bold is a major point. Top predators control ecosystems unless or until they eat themselves out of a job, or prey disappear. The bush of life requires active econiches/systems.

dhw: Of course it does. Every single organism that has ever lived depends or depended on econiches that provide food. Could anyone possibly disagree? (NB this subject has nothing whatsoever to do with the theory that a God personally designed every econiche for the sole purpose of keeping life going until he fulfilled his one and only purpose of designing H. sapiens. Thank you for keeping the two subjects separate.)

What allows such huge size is buoyancy. No strain on bones and joints..

Evolution: genomic evidence of pre-planning

by David Turell @, Wednesday, August 19, 2020, 22:54 (1555 days ago) @ David Turell

Fins to hands:

https://phys.org/news/2020-08-lungfish-fins-reveal-limbs-evolved.html

"An international team of biologists based at the University of Konstanz (Germany)... has determined how limbs have evolved from fins using embryos of the Australian lungfish (Neoceratodus forsteri) for their study. The Australian lungfish is the closest living fish relative of tetrapods and is often considered a "living fossil" as it still resembles the fishes that were around at the time when the first four-limbed vertebrates began to walk on land. For these reasons the fins of lungfish provide a better reference to study the evolutionary transition of fins into limbs than any other extant fish species.

"The team's research, which is reported in the latest issue of Science Advances, shows that a primitive hand is present in lungfish fins but at the same time suggests that the unique anatomy of limbs with digits only evolved during the rise of tetrapods through changes in embryonic development.

"To solve the puzzle of how limbs emerged from fins during evolution researchers have focused on embryonic development. "During embryogenesis, a suite of 'architect' genes shapes an amorphous group of precursor cells into fully grown limbs," explains Dr. Joost Woltering, first author on the study and an assistant professor in the Evolutionary Biology group at the University of Konstanz led by Professor Axel Meyer. The very same "architect" genes also drive fin development. However, because evolutionary changes have occurred in the activity of these genes, the developmental process produces fins in fish and limbs in tetrapods.

"To compare this process in fins and limbs, the team studied such "architect" genes in the embryos of the Australian lungfish. "Amazingly, what we discovered is that the gene specifying the hand in limbs (hoxa13) is activated in a similar skeletal region in lungfish fins," explains Woltering. Importantly, this domain has never been observed in the fins of other fish that are more distantly related to tetrapods. "This finding clearly indicates that a primitive hand was already present in the ancestors of land animals." (my bold)

"The lungfish "hand," in spite of this modern genetic signature, only partially resembles the anatomy of tetrapod hands because it lacks fingers or toes. To understand the genetic basis for this difference the team went on to analyze additional genes known to be associated with the formation of digits, finding that one gene important for the formation of fingers and toes (hoxd13—a "sister gene" to the above-mentioned hoxa13) appeared to be switched on differently in fins.

"During tetrapod limb development, the hoxd13 gene is switched on in a dynamic manner. It first becomes activated in the developing pinky finger and then expands all the way throughout the future hand towards the thumb. This process coordinates the correct formation of all five fingers. While Joost Woltering's team observed a similar activation pattern of this gene in lungfish fins, it did not show this expansion but only remained activated in exactly one half of the fin. Additional differences were found for genes that are normally switched off in digits. In lungfish fins these genes remain active, but on the opposite side of the domain where hoxd13 is activated.

"'All of this goes to show that while lungfish fins unexpectedly have a primitive hand in common with tetrapods, the fins of our ancestors also needed an evolutionary 'finishing touch' to produce limbs. In this sense it looks as if the hand was there first, only to be complemented with digits later during evolution," says Woltering. One influential hypothesis regarding the evolution of limbs first put forward by early 20th-century paleontologists Thomas Westoll and William Gregory, and in the 1980s famously developed further by Neil Shubin, postulates that fingers and toes arose through an expansion of the skeletal elements on one side of the fins of the tetrapod ancestor. This inferred expansion of fin elements corresponds exactly to the differences the team found in the expansion of the digit genes between lungfish fins and tetrapod limbs. The team's observations on the activation and deactivation of limb "architect" genes in lungfish fins thus provides evidence in support of this classical transformational model."

Comment: All courses in comparative anatomy show that from fish onward, we all have the same design pattern in the skeleton. As might be supposed muscle patterns are similar as are digestive organs. Note my bold. This study clearly shows earlier organisms are the templates for future more advanced organisms. This fits with my theory God created evolution by preplanning in the genome. Also reinforced by Behe's finding advances are created by deletion of earlier DNA.

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, February 11, 2021, 15:58 (1379 days ago) @ David Turell
edited by David Turell, Thursday, February 11, 2021, 16:10

Fish had genes leading to land life:

https://www.sciencemag.org/news/2021/02/fish-had-genes-adapt-life-land-while-they-were-...

"Together, the studies suggest that in terms of genes, the aquatic precursors of four-limbed land animals, or tetrapods, were well-prepared. They were pre-equipped with genes that could be turned to making limbs, efficient air-breathing lungs, and nervous systems tuned to the challenges of life on land.

“'All these studies tell us that the origin of tetrapods was something waiting to happen,” says Borja Esteve-Altava, an evolutionary biologist at Pompeu Fabra University in Barcelona, Spain. Genetically, “Everything necessary was already there” before vertebrates came ashore, nearly 400 million years ago. (my bold)

***

"In the trio of studies published last week in Cell, genes in living fish took the place of fossils as a way to peer back in time. One set of clues came from studies of mutagenized zebrafish, a favorite model for studying development. M. Brent Hawkins, then a Harvard University graduate student and now a postdoc, was shocked to discover zebrafish mutants with two bones resembling the forelimb bones of land animals in their front fins, complete with muscles, joints, and blood vessels. The finding is “quite spectacular,” says Marie-Andrée Akimenko, a developmental biologist at the University of Ottawa.

"Two mutated genes, vav2 and waslb, were responsible for the transformation. Both genes code for proteins that are part of a pathway controlling the activity of Hox11 proteins, regulatory molecules that guide the formation of the two forearm bones in mammals, among other functions.

***

"Other genetic clues come from living representatives of ancient fish lineages. Only two groups of the lobe-finned fish are alive today: lungfish and coelacanths. About 400 million years ago, they diverged from the line of lobe-finned fish that gave rise to tetrapods 30 million years later.

***

"The groundwork for terrestrial traits like limbs and lungs was laid deep in the fish family tree. Genes for such traits found in both lobe-finned and ray-finned fishes must also have been present in their common ancestor.

"None of the sequenced fish is on the precise branch that led to tetrapods. Yet all have much of the genetic equipment needed for life on land, including most of the genes and regulatory DNA needed to build limbs. For example, all the fish sequenced have a regulatory element that helps form synovial joints, which make fins and limbs flexible and are essential for terrestrial locomotion. The fish also have 11 genes that are needed to build lungs and that work the same way in the bichir’s lungs as they do in humans. One is for a pulmonary surfactant, a lubricating secretion that helps lungs expand and contract. Both the ray-finned fishes and the lobe-finned lungfish also apparently have a regulatory element that helps shape the right ventricle of the heart to deliver oxygen more efficiently.

"The findings show that “a lot of things we think are just in land animals are also in fish,” says Gage Crump, a developmental biologist at the University of Southern California. Finding all those genes in both lobe-finned and ray-finned fish means those genetic pathways must have been present in their common ancestor, some 425 million years ago. “It is surprising that some of these elements are so conserved for such a long evolutionary time,” Zhang says.

***

"The genome of the lungfish offers a glimpse of later adaptations along the path to terrestrial life. It includes additional pulmonary surfactant genes that the ray-finned fishes lack, as well as DNA for specifying five toes, connecting nerves to limb muscles, and for sensitizing the brain to react fast. All those genes were previously thought to be unique to tetrapods.

"Putting it all together, Wang and Zhang think the transition to land involved three key steps. The ability to breathe air occasionally appeared in the common ancestor to ray-and lobe-finned fish, about 425 million years ago. Then surfactant genes, new nervous system genes, and other innovations enabled lobe-finned fish to leave the water temporarily. Finally, after the African lungfish split off from the lobe fins, the common ancestor of land vertebrates acquired other respiratory and locomotive refinements needed to live out of water.

"Rather than building new structures and genetic pathways just when vertebrates moved onto land, evolution apparently was thrifty, using existing genes to adapt to the opportunities offered by terrestrial habitats. “[The studies] show the extent to which the fish-tetrapod transition was achieved by modifying existing molecular systems, rather than creating new ones,” says Per Ahlberg, a paleontologist at Uppsala University."

Comment: note my bold, as science validates my theory that DNA is prepared for major advances. dhw sneers at my proposal that DNA has built-in planning for future major advances such as fish climbing into terrestrial life. This article is proof-positive the DNA setup for rapid advances is present. It explains the fossil gaps Gould tried to explain.

Evolution:strange DNA shapes increase mutation rate

by David Turell @, Thursday, February 11, 2021, 19:23 (1379 days ago) @ David Turell

A new finding:

https://www.sciencedaily.com/releases/2021/02/210209121031.htm

"DNA sequences that can fold into shapes other than the classic double helix tend to have higher mutation rates than other regions in the human genome. New research shows that the elevated mutation rate in these sequences plays a major role in determining regional variation in mutation rates across the genome.

***

"'But, as much as 13% of the human genome can fold into different conformations called 'non-B DNA.' We wanted to explore what role, if any, this non-B DNA played in variation that we see in mutation rates among different regions of the genome."

"Non-B DNA can fold into a number of different conformations depending on the underlying DNA sequence. Examples include G-quadruplexes, Z-DNA, H-DNA, slipped strands, and various other conformations. Recent research has revealed that non-B DNA plays critical roles in cellular processes, including the replication of the genome and the transcription of DNA into RNA, and that mutations in non-B sequences are associated with genetic diseases.

***

"For most types of non-B DNA, the team found increased mutation rates. The differences were enough that non-B DNA mutation rates impacted regional variation in their immediate surroundings. These differences also helped explain a large portion of the variation that can be seen along the genome at the scale of millions of nucleotides.

"When we look at all the known factors that influence regional variation in mutation rates across the genome, non-B DNA is the largest contributor," said Francesca Chiaromonte,

***

"The results also have evolutionary implications.

"'We know that natural selection can impact variation in the genome, so for this study we only looked at regions of the genome that we think are not under the influence of selection," said Yi-Fei Huang, assistant professor of biology at Penn State and one of the leaders of the research team. "This allows us to establish a baseline mutation rate for each type of non-B DNA that in the future we could potentially use to help identify signatures of natural selection in these sequences." (my bold)

***

"'Mutations are usually thought to be so rare, that when we see the same mutation in different individuals, the assumption is that those individuals shared an ancestor who passed the mutation to them both," said Makova, a Penn State Cancer Institute researcher. "But it's possible that the mutation rate is so high in some of these non-B DNA regions that the same mutation could occur independently in several different individuals. If this is true, it would change how we think about evolution.'"

Comment: So again we see mutations that have no relation to required adaptation/survival as Darwinists insist must drive evolution. My bold notes their statement that they think there are areas of DNA where selection cannot work. That whole thought surprises me as I don't understand how they know some parts of DNA cannot be changed. Natural selection can only react passively on what DNA presents. A puzzle. The other puzzling statement is in the last paragraph where they do not seem to recognize the concept of convergence, which is known to cause simultaneous similar DNA changes in different individuals.

Evolution: more genomic evidence of pre-planning

by dhw, Friday, February 12, 2021, 10:56 (1378 days ago) @ David Turell

QUOTE: “'All these studies tell us that the origin of tetrapods was something waiting to happen.” (David's bold)
"
QUOTE: "The ability to breathe air occasionally appeared in the common ancestor to ray-and lobe-finned fish, about 425 million years ago. Then surfactant genes, new nervous system genes, and other innovations enabled lobe-finned fish to leave the water temporarily. Finally, after the African lungfish split off from the lobe fins, the common ancestor of land vertebrates acquired other respiratory and locomotive refinements needed to live out of water."

DAVID: note my bold, as science validates my theory that DNA is prepared for major advances. dhw sneers at my proposal that DNA has built-in planning for future major advances such as fish climbing into terrestrial life. This article is proof-positive the DNA setup for rapid advances is present. It explains the fossil gaps Gould tried to explain.

It had to be prepared for major advances, i.e. the mechanism had to be present – otherwise, if all life has descended from the first cells, the major advances could never have happened! But look at the paragraph I’ve quoted. It offers a complete history – “occasionally”, using existing genes, then new genes and other innovations (but still only temporarily on land), and then more “respiratory and locomotive refinements”, all of which enabled the fish to live permanently on land. I don’t know how “rapid” this process was, but it could have taken millions of years and of generations of organisms adapting to new environments. What is your theory? That 3.8 billion years ago your God provided the first cells with a programme for occasional air breathing, then another for lots of new genes later on, and then another for more refinements? Or did he keep popping in? “I’ll give you some genes for occasional breathing…”. Then a few million years later: “Here are some new ones for you, for temporary breathing.” “Then a few million years later: “Have some more and go and live permanently on dry land.”

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, February 12, 2021, 15:38 (1378 days ago) @ dhw

QUOTE: “'All these studies tell us that the origin of tetrapods was something waiting to happen.” (David's bold)
"
QUOTE: "The ability to breathe air occasionally appeared in the common ancestor to ray-and lobe-finned fish, about 425 million years ago. Then surfactant genes, new nervous system genes, and other innovations enabled lobe-finned fish to leave the water temporarily. Finally, after the African lungfish split off from the lobe fins, the common ancestor of land vertebrates acquired other respiratory and locomotive refinements needed to live out of water."

DAVID: note my bold, as science validates my theory that DNA is prepared for major advances. dhw sneers at my proposal that DNA has built-in planning for future major advances such as fish climbing into terrestrial life. This article is proof-positive the DNA setup for rapid advances is present. It explains the fossil gaps Gould tried to explain.

dhw: It had to be prepared for major advances, i.e. the mechanism had to be present – otherwise, if all life has descended from the first cells, the major advances could never have happened! But look at the paragraph I’ve quoted. It offers a complete history – “occasionally”, using existing genes, then new genes and other innovations (but still only temporarily on land), and then more “respiratory and locomotive refinements”, all of which enabled the fish to live permanently on land. I don’t know how “rapid” this process was, but it could have taken millions of years and of generations of organisms adapting to new environments. What is your theory? That 3.8 billion years ago your God provided the first cells with a programme for occasional air breathing, then another for lots of new genes later on, and then another for more refinements? Or did he keep popping in? “I’ll give you some genes for occasional breathing…”. Then a few million years later: “Here are some new ones for you, for temporary breathing.” “Then a few million years later: “Have some more and go and live permanently on dry land.”

My bold of a scientist's 'waiting to happen" quote tells the story. The existing DNA allowed the advances to happen. You have not answered the real issue, how did it happen that a mechanism for advance was present undoubtedly in the first bacteria? Designed or by chance? Speed of change is not the issue you try to raise. The quote you used simply describes what happened, not 'why' there was a preparation mechanism for advances. Designer is implied, strongly.

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, February 13, 2021, 12:03 (1377 days ago) @ David Turell

DAVID: dhw sneers at my proposal that DNA has built-in planning for future major advances such as fish climbing into terrestrial life. This article is proof-positive the DNA setup for rapid advances is present. It explains the fossil gaps Gould tried to explain.

dhw: It had to be prepared for major advances, i.e. the mechanism had to be present – otherwise, if all life has descended from the first cells, the major advances could never have happened! […] What is your theory? That 3.8 billion years ago your God provided the first cells with a programme for occasional air breathing? […] Or did he keep popping in? […]

DAVID: My bold of a scientist's 'waiting to happen" quote tells the story. The existing DNA allowed the advances to happen. You have not answered the real issue, how did it happen that a mechanism for advance was present undoubtedly in the first bacteria? […] Designer is implied, strongly.

Thank you for at last agreeing that the MECHANISM for change was already present in the first DNA. No need for millions of computer programmes or divine dabbling. How often do you want me to repeat that nobody knows the origin of life or of this mechanism, but God is one possibility, chance is another, and a form of panpsychism is another, but I find all three first causes equally difficult to believe in.

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, February 13, 2021, 18:04 (1377 days ago) @ dhw

DAVID: dhw sneers at my proposal that DNA has built-in planning for future major advances such as fish climbing into terrestrial life. This article is proof-positive the DNA setup for rapid advances is present. It explains the fossil gaps Gould tried to explain.

dhw: It had to be prepared for major advances, i.e. the mechanism had to be present – otherwise, if all life has descended from the first cells, the major advances could never have happened! […] What is your theory? That 3.8 billion years ago your God provided the first cells with a programme for occasional air breathing? […] Or did he keep popping in? […]

DAVID: My bold of a scientist's 'waiting to happen" quote tells the story. The existing DNA allowed the advances to happen. You have not answered the real issue, how did it happen that a mechanism for advance was present undoubtedly in the first bacteria? […] Designer is implied, strongly.

dhw: Thank you for at last agreeing that the MECHANISM for change was already present in the first DNA. No need for millions of computer programmes or divine dabbling. How often do you want me to repeat that nobody knows the origin of life or of this mechanism, but God is one possibility, chance is another, and a form of panpsychism is another, but I find all three first causes equally difficult to believe in.

'
Poised on the picket fence as usual.

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, February 14, 2021, 15:41 (1376 days ago) @ David Turell

Transferred from the Neanderthal post, since you tried to use that as evidence of your God changing human brains in anticipation of new requirements.

DAVID: …the article's inference is our brains were very different 315,000 years ago when we appeared, with those 61 genes, and long before our current productions. Sure looks like an anticipated-usage preparation.
Quote: …. [the team] first compared the genomes of modern humans with those of Neanderthals and Denisovans—another archaic human—reconstructed from excavated bones. They found 61 genes for which modern humans all had one version and the archaic humans had another.

Again this is confusing. When did the 61 different genes come into existence? Did the team examine the brain of sapiens fossils from the time of co-existence or from today? It sounds as if it’s from today, in which case we have no idea exactly when the new genes appeared. In any case, we have been over this a thousand times: nobody knows how brain changes occurred in the past. But we agreed that there was a long period of stasis between the arrival of the sapiens brain and the burst of activity that produced our current advanced civilization. This is consistent with the even longer periods of stasis that occurred between earlier stages of brain change. I have proposed that each brain change is the result of some new activity or requirement (as proven by changes that take place in the modern brain), whereas you propose your God stepped in and performed operations on groups of hominins and homos before they engaged in new activities. I really don’t know why we have to go over all this again.

Xxxxxx

DAVID: My bold of a scientist's 'waiting to happen" quote tells the story. The existing DNA allowed the advances to happen. You have not answered the real issue, how did it happen that a mechanism for advance was present undoubtedly in the first bacteria? […] Designer is implied, strongly.

dhw: Thank you for at last agreeing that the MECHANISM for change was already present in the first DNA. No need for millions of computer programmes or divine dabbling. How often do you want me to repeat that nobody knows the origin of life or of this mechanism, but God is one possibility, chance is another, and a form of panpsychism is another, but I find all three first causes equally difficult to believe in.

DAVID: Poised on the picket fence as usual.

Yes of course. Meanwhile, you are glossing over a truly momentous development in your thinking: that “the mechanism for advance was present undoubtedly in the first bacteria”. No need for a 3.8-billion-year programme for every individual advance, and no need for your God to perform millions of operations.

Evolution: more genomic evidence of pre-planning

by David Turell @, Sunday, February 14, 2021, 17:47 (1376 days ago) @ dhw
edited by David Turell, Sunday, February 14, 2021, 18:20

Transferred from the Neanderthal post, since you tried to use that as evidence of your God changing human brains in anticipation of new requirements.

DAVID: …the article's inference is our brains were very different 315,000 years ago when we appeared, with those 61 genes, and long before our current productions. Sure looks like an anticipated-usage preparation.
Quote: …. [the team] first compared the genomes of modern humans with those of Neanderthals and Denisovans—another archaic human—reconstructed from excavated bones. They found 61 genes for which modern humans all had one version and the archaic humans had another.

Again this is confusing. When did the 61 different genes come into existence? Did the team examine the brain of sapiens fossils from the time of co-existence or from today? It sounds as if it’s from today, in which case we have no idea exactly when the new genes appeared.

Total subterfuge. We appeared with different brains about 250,000 years after Neanderthals. Undoubtedly we had very different brain genes at that point. That they may have modified somewhat since our arrival is totally beside the point. We were never Neanderthal

dhw: In any case, we have been over this a thousand times: nobody knows how brain changes occurred in the past. But we agreed that there was a long period of stasis between the arrival of the sapiens brain and the burst of activity that produced our current advanced civilization. This is consistent with the even longer periods of stasis that occurred between earlier stages of brain change. I have proposed that each brain change is the result of some new activity or requirement (as proven by changes that take place in the modern brain), whereas you propose your God stepped in and performed operations on groups of hominins and homos before they engaged in new activities. I really don’t know why we have to go over all this again.

The point is preparatory changes in DNA


Xxxxxx

DAVID: My bold of a scientist's 'waiting to happen" quote tells the story. The existing DNA allowed the advances to happen. You have not answered the real issue, how did it happen that a mechanism for advance was present undoubtedly in the first bacteria? […] Designer is implied, strongly.

dhw: Thank you for at last agreeing that the MECHANISM for change was already present in the first DNA. No need for millions of computer programmes or divine dabbling. How often do you want me to repeat that nobody knows the origin of life or of this mechanism, but God is one possibility, chance is another, and a form of panpsychism is another, but I find all three first causes equally difficult to believe in.

DAVID: Poised on the picket fence as usual.

dhw: Yes of course. Meanwhile, you are glossing over a truly momentous development in your thinking: that “the mechanism for advance was present undoubtedly in the first bacteria”. No need for a 3.8-billion-year programme for every individual advance, and no need for your God to perform millions of operations.

My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

Any evidence of advanced preparation in preceding DNA puts totally aside the Darwinoid interpretation of evolution as a totally purposeless chance advancing process. These preparations definitely show a planning designer.

Evolution: more genomic evidence of pre-planning

by dhw, Monday, February 15, 2021, 12:12 (1375 days ago) @ David Turell

DAVID: We appeared with different brains about 250,000 years after Neanderthals. Undoubtedly we had very different brain genes at that point. That they may have modified somewhat since our arrival is totally beside the point. We were never Neanderthal.

Neanderthals died out about 40,000 years ago, and interbred with sapiens. I’m asking when the 61 different sapiens genes might have appeared. I’m not saying we were once Neanderthal!

dhw: In any case, we have been over this a thousand times: nobody knows how brain changes occurred in the past. But we agreed that there was a long period of stasis between the arrival of the sapiens brain and the burst of activity that produced our current advanced civilization. This is consistent with the even longer periods of stasis that occurred between earlier stages of brain change. I have proposed that each brain change is the result of some new activity or requirement (as evidenced by changes that take place in the modern brain), whereas you propose your God stepped in and performed operations on groups of hominins and homos before they engaged in new activities. I really don’t know why we have to go over all this again.

DAVID: The point is preparatory changes in DNA.

The point is that sapiens has some genes that were not present in Neanderthal. Nobody says anything about “preparatory”. I’m trying to work out what the article is meant to prove. As far as our discussions are concerned, I have simply repeated and summarized the views already expressed on the whole subject.

Evolution: more genomic evidence of pre-planning

by dhw, Monday, February 15, 2021, 12:16 (1375 days ago) @ dhw

My apologies for repeating this. I left out the second part earlier.

DAVID: We appeared with different brains about 250,000 years after Neanderthals. Undoubtedly we had very different brain genes at that point. That they may have modified somewhat since our arrival is totally beside the point. We were never Neanderthal.

Neanderthals died out about 40,000 years ago, and interbred with sapiens. I’m asking when the 61 different sapiens genes might have appeared. I’m not saying we were once Neanderthal!

dhw: In any case, we have been over this a thousand times: nobody knows how brain changes occurred in the past. But we agreed that there was a long period of stasis between the arrival of the sapiens brain and the burst of activity that produced our current advanced civilization. This is consistent with the even longer periods of stasis that occurred between earlier stages of brain change. I have proposed that each brain change is the result of some new activity or requirement (as evidenced by changes that take place in the modern brain), whereas you propose your God stepped in and performed operations on groups of hominins and homos before they engaged in new activities. I really don’t know why we have to go over all this again.

DAVID: The point is preparatory changes in DNA.

The point is that sapiens has some genes that were not present in Neanderthal. Nobody says anything about “preparatory”. I’m trying to work out what the article is meant to prove. As far as our discussions are concerned, I have simply repeated and summarized the views already expressed on the whole subject.

Xxxxxx

DAVID: You have not answered the real issue, how did it happen that a mechanism for advance was present undoubtedly in the first bacteria? […] Designer is implied, strongly. […]

dhw:[…]. Meanwhile, you are glossing over a truly momentous development in your thinking: that “the mechanism for advance was present undoubtedly in the first bacteria”. No need for a 3.8-billion-year programme for every individual advance, and no need for your God to perform millions of operations.

DAVID: My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

What do you mean by “coding”? Why have you switched from “mechanism”?

DAVID: Any evidence of advanced preparation in preceding DNA puts totally aside the Darwinoid interpretation of evolution as a totally purposeless chance advancing process. These preparations definitely show a planning designer.

We are not talking about the purpose or non-purpose of evolution, but about the mechanism that enables bacteria to solve new problems and life forms to change into different life forms. Previously you have limited yourself to either a divine 3.8-billion-year-old computer programme for every solution and every innovation, or your God personally stepping in to perform operations or deliver lectures to the lucky few. I have proposed a mechanism (cellular intelligence) that would enable bacteria and all life forms to solve problems and design their own innovations. I agree with you that this mechanism may well have been designed by a designer, and I suggest that his plan may have been to allow life forms a free hand, resulting in the vast diversity of the life forms that make up life’s history.

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, February 15, 2021, 22:33 (1375 days ago) @ dhw

continuation:

DAVID: My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

dhw: What do you mean by “coding”? Why have you switched from “mechanism”?

Why teh question. DNA is coding and DNA changes ran/runs evolution


DAVID: Any evidence of advanced preparation in preceding DNA puts totally aside the Darwinoid interpretation of evolution as a totally purposeless chance advancing process. These preparations definitely show a planning designer.

dhw: We are not talking about the purpose or non-purpose of evolution, but about the mechanism that enables bacteria to solve new problems and life forms to change into different life forms. Previously you have limited yourself to either a divine 3.8-billion-year-old computer programme for every solution and every innovation, or your God personally stepping in to perform operations or deliver lectures to the lucky few. I have proposed a mechanism (cellular intelligence) that would enable bacteria and all life forms to solve problems and design their own innovations. I agree with you that this mechanism may well have been designed by a designer, and I suggest that his plan may have been to allow life forms a free hand, resulting in the vast diversity of the life forms that make up life’s history.

'
You stick to your theory and it favors God I think.

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, February 16, 2021, 12:07 (1374 days ago) @ David Turell

DAVID: The point is preparatory changes in DNA.

dhw: The point is that sapiens has some genes that were not present in Neanderthal. Nobody says anything about “preparatory”. I’m trying to work out what the article is meant to prove. As far as our discussions are concerned, I have simply repeated and summarized the views already expressed on the whole subject.

DAVID: But it only took 61 new genes to do the job. The article just proves the difference at the genetic level. And we learned to use the better brain much later than its appearance with those genes.

The fact that it only took 61 genes to make our brains different from Neanderthal brains tells us nothing about how or why or when the brain changed, and it certainly does not mean that your God changed them in preparation for anything. I have suggested that stasis is common to ALL stages of brain change and only ends when there are new activities or requirements. And finally, there is no evidence provided by the modern brain that changes take place in preparation for new activities.

DAVID: My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

dhw: What do you mean by “coding”? Why have you switched from “mechanism”?

DAVID: Why the question. DNA is coding and DNA changes ran/runs evolution.

We don’t know what ran/runs evolution! You say God preprogrammes or personally dabbles the changes to DNA, but I - and certain scientists who are far more knowledgeable about these matters than I am – have suggested that there is a mechanism within the cell/cell community, i.e. the equivalent of a brain (possibly God-given) which organizes the changes.

dhw: I agree with you that this mechanism may well have been designed by a designer, and I suggest that his plan may have been to allow life forms a free hand, resulting in the vast diversity of the life forms that make up life’s history.

DAVID: You stick to your theory and it favors God I think.

No it doesn’t. I have named three possible “first causes” and can believe in none of them. But if God exists, then I am offering you a theory concerning his possible motives and methods.

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, February 16, 2021, 17:44 (1374 days ago) @ dhw

DAVID: The point is preparatory changes in DNA.

DAVID: But it only took 61 new genes to do the job. The article just proves the difference at the genetic level. And we learned to use the better brain much later than its appearance with those genes.

dhw: The fact that it only took 61 genes to make our brains different from Neanderthal brains tells us nothing about how or why or when the brain changed, and it certainly does not mean that your God changed them in preparation for anything. I have suggested that stasis is common to ALL stages of brain change and only ends when there are new activities or requirements. And finally, there is no evidence provided by the modern brain that changes take place in preparation for new activities.

The facts are exactly the opposite. Sapiens big brains appeared over 300,000 year ago with no new use of them until the last 10-15,000 years ago. Why do big brains in any group appear before new use is learned?


DAVID: My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

dhw: What do you mean by “coding”? Why have you switched from “mechanism”?

DAVID: Why the question. DNA is coding and DNA changes ran/runs evolution.

dhw: We don’t know what ran/runs evolution! You say God preprogrammes or personally dabbles the changes to DNA, but I - and certain scientists who are far more knowledgeable about these matters than I am – have suggested that there is a mechanism within the cell/cell community, i.e. the equivalent of a brain (possibly God-given) which organizes the changes.

Again stretching Shapiro's findings into your cellular intelligence theory.


dhw: I agree with you that this mechanism may well have been designed by a designer, and I suggest that his plan may have been to allow life forms a free hand, resulting in the vast diversity of the life forms that make up life’s history.

DAVID: You stick to your theory and it favors God I think.

dhw: No it doesn’t. I have named three possible “first causes” and can believe in none of them. But if God exists, then I am offering you a theory concerning his possible motives and methods.

You view His motives as very humanizing.

Evolution: always advancing or not?

by David Turell @, Tuesday, February 16, 2021, 18:20 (1374 days ago) @ David Turell

Not is the current finding:

https://phys.org/news/2021-02-evolution-game-rock-paper-scissors.html

"If B is better than A, and C is better than B, it follows by the transitive property that C is better than A. And, yet, this is not always the case. Every kid is familiar with the Rock-Paper-Scissors game—the epitome of nontransitivity in which there is no clear hierarchy among the three choices, despite each two-way interaction having a clear winner: Paper beats Rock, Scissors beats Paper, and Rock beats Scissors.


"Evolution may be teeming with nontransitive interactions as well. While natural selection—the process by which organisms better adapted to their environments are more likely to survive and pass on their genes—can be observed over shorter time intervals, there is still debate about whether fitness gains accumulate over long evolutionary time scales. In other words, one might expect that successive adaptive events (like the two-way interactions of Rock-Paper-Scissors) would translate into a cumulative increase in fitness, resulting in the very latest generation always being more fit than its all of its genealogical ancestors. However, this turns out to not be true in every case.

"The evolutionary process, then, includes what are known as nontransitive interactions, sometimes producing organisms that are less fit than its ancestors. Experimental demonstrations of such nontransitivity, however, have been lacking.

***

"'Another misconception is that there is a single locus of selection," says Lang. "Multilevel selection—as its name implies—states that selection can act simultaneously on multiple levels of biological organization."

In the context of this experiment, multilevel selection was common, says Lang. "Selection acts across multiple levels of biological organization, from genes within a cell to individuals within a population. Selection at one level can impact fitness at another.

***

"By showing that nontransitive interactions can arise along a line of genealogical succession, the team's work has broad implications for the scientific community's understanding of evolutionary processes.

"'It resolves what evolutionary biologist Stephen Jay Gould referred to as 'the paradox of the first tier,' which is the failure to identify broad patterns of progress over long evolutionary time scales, despite clear evidence of selection acting over successive short time intervals," says Lang. "In addition, it calls into doubt whether true fitness maxima exist and, more broadly, it implies that directionality and progress in evolution may be illusory.'"

Comment: Basically evolution can go back and forth, not steadily forward

Evolution: physical change in speciation, brain control

by David Turell @, Tuesday, February 16, 2021, 19:20 (1374 days ago) @ David Turell

Do dinosaurs with wings know how to fly or do they have to learn it. Partially formed wings cannot fly and can be a obviously severe impediment to survival: One should expect full proper wings all at once:

https://mindmatters.ai/2021/02/random-evolution-doesnt-produce-algorithmic-functions-in...

"A bird does not fly just because it has wings; it needs a “flight” program in its brain. Explanations of the evolution of flight do not account for that.

***

"How can “a random process with no insight into the environment… increase information about that environment within evolving DNA sequences and/or artificial intelligence programs. By what mechanism can randomness ‘know’ anything?” Dr. Holloway’s challenge goes to the heart of the problem with the materialist worldview regarding origins, evolution, and ultimately intelligence.

***

"We have hardware for locomotion: ankles and feet. We need the know-how, the methods, the sequence of commands — the software — to operate that hardware. Feet don’t walk us, nor do they walk independently of us. Rather, we walk using feet. When the hardware changes, for example, if feet were to become roller skates, the software must change radically too.

***

"You must change your software to operate new or modified hardware. In the same way, when an animal’s biological hardware changes, that animal’s operating software must also change to match the hardware changes.

***

"Discussions of dinosaur-to-bird evolution talk about the hardware changes: scales became feathers, legs became wings, cold-blooded (exothermic) physiology became warm-blooded (endothermic) physiology, tooth-filled mouths became beaks, and so on. All of these monumental changes in hardware present enormous operational challenges that incremental mutations somehow solved over millions of years. But totally missing is any account of the evolution of the necessary software.

"Assume for the moment that unguided mutation could actually modify a reptile and install the wing apparatus, including all the muscles and feathers. For the early stubby proto-wing to give the modified reptile the “survival advantage” necessary to win in natural selection, the reptile must know how to use the proto-wing. A reptile with proto-wings instead of legs is like a human with roller skates instead of feet. The reptile must have the biological software to operate the proto-wings successfully. Whatever software the legged reptile had, it won’t operate a proto-wing. The stubby-winged reptile is worse off than his legged brothers and sisters, not better, and won’t win the natural selection prize.

***

"When walking or skating, we develop “muscle memory.” Our brains and nervous systems internalize the procedures for these tasks. We don’t think about them, we just engage them. The toddler toddles around looking for the kitten he wants to play with — and finds it prudently perched on a ledge out of arm’s reach. The toddler doesn’t think about having to walk while trying to carry out that intention. Doubtless, reptiles don’t think about walking, and birds don’t think about flying. They just expect the subroutines in their brains to carry out the tasks."

***

"...neo-Darwinism must explain not only how hardware features mutated into existence but also how the biological operating software came into existence and could then be modified successfully in dramatic ways.

***

"Materialist thinkers contend that every feature of brain, mind, and consciousness arose via cause-effect physics and chemistry accounted for by neo-Darwinism. In that case, they first need to explain how biological software is created and stored in animals, and then how such software can be mutated by accident just in time to operate new biological hardware. Solve those problems first, before claiming human consciousness is mere biochemistry."

Comment: Babies learn to walk. They have a completeness to start with. Brain plasticity takes over. The logic is new species must arrive with 'completeness' making all parts ready to go. New muscle arrangements must be matched with brain capacity that has plasticity to learn to control the new muscle uses. Half changes will not work. Only newly designed species logically fit the problem.

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, February 17, 2021, 13:24 (1373 days ago) @ David Turell

Pre-planning

DAVID: The point is preparatory changes in DNA.
And:
DAVID: But it only took 61 new genes to do the job. The article just proves the difference at the genetic level. And we learned to use the better brain much later than its appearance with those genes.

dhw: The fact that it only took 61 genes to make our brains different from Neanderthal brains tells us nothing about how or why or when the brain changed, and it certainly does not mean that your God changed them in preparation for anything. I have suggested that stasis is common to ALL stages of brain change and only ends when there are new activities or requirements. And finally, there is no evidence provided by the modern brain that changes take place in preparation for new activities.

DAVID: The facts are exactly the opposite. Sapiens big brains appeared over 300,000 year ago with no new use of them until the last 10-15,000 years ago. Why do big brains in any group appear before new use is learned?

“Exactly the opposite”? The 285,000 years are the period of stasis, and I have just repeated my proposal that ALL stages of brain development have followed the same pattern: the brain changes when there are new activities or requirements. Once those activities are established and the requirements are fulfilled, THE BRAIN DOES NOT NEED TO CHANGE. Hence stasis, until new activities and requirements require the next change.

DAVID: My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

dhw: What do you mean by “coding”? Why have you switched from “mechanism”?

DAVID: Why the question. DNA is coding and DNA changes ran/runs evolution.

dhw: We don’t know what ran/runs evolution! You say God preprogrammes or personally dabbles the changes to DNA, but I - and certain scientists who are far more knowledgeable about these matters than I am – have suggested that there is a mechanism within the cell/cell community, i.e. the equivalent of a brain (possibly God-given) which organizes the changes.

DAVID: Again stretching Shapiro's findings into your cellular intelligence theory.

How many more times do you want me to quote the passages YOU quote in your own book?
Living cells are cognitive (sentient) entities that act and interact purposefully to ensure survival, growth, and proliferation…Cells are built to evolve; they have the ability to alter their hereditary characteristics…Evolutionary novelty arises from the production of new cell and multicellular structures as a result of cellular self-modification…

Please stop pretending that Shapiro does not mean what he says.

Evolution: more genomic evidence of pre-planning

by David Turell @, Wednesday, February 17, 2021, 18:07 (1373 days ago) @ dhw

Pre-planning

DAVID: The point is preparatory changes in DNA.
And:
DAVID: But it only took 61 new genes to do the job. The article just proves the difference at the genetic level. And we learned to use the better brain much later than its appearance with those genes.

dhw: The fact that it only took 61 genes to make our brains different from Neanderthal brains tells us nothing about how or why or when the brain changed, and it certainly does not mean that your God changed them in preparation for anything. I have suggested that stasis is common to ALL stages of brain change and only ends when there are new activities or requirements. And finally, there is no evidence provided by the modern brain that changes take place in preparation for new activities.

DAVID: The facts are exactly the opposite. Sapiens big brains appeared over 300,000 year ago with no new use of them until the last 10-15,000 years ago. Why do big brains in any group appear before new use is learned?

dhw: “Exactly the opposite”? The 285,000 years are the period of stasis, and I have just repeated my proposal that ALL stages of brain development have followed the same pattern: the brain changes when there are new activities or requirements. Once those activities are established and the requirements are fulfilled, THE BRAIN DOES NOT NEED TO CHANGE. Hence stasis, until new activities and requirements require the next change.

You are presenting a giant brain waiting for future use, appearing and then just lying around for for 285,000 years for full use. You have not answered why so big so early. Early sapiens lived in a very similar way to erectus. What demanded such a large change if a drive cannot be identified as a requirement for living?


DAVID: My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

dhw: What do you mean by “coding”? Why have you switched from “mechanism”?

DAVID: Why the question. DNA is coding and DNA changes ran/runs evolution.

dhw: We don’t know what ran/runs evolution! You say God preprogrammes or personally dabbles the changes to DNA, but I - and certain scientists who are far more knowledgeable about these matters than I am – have suggested that there is a mechanism within the cell/cell community, i.e. the equivalent of a brain (possibly God-given) which organizes the changes.

DAVID: Again stretching Shapiro's findings into your cellular intelligence theory.

dhw: How many more times do you want me to quote the passages YOU quote in your own book?
Living cells are cognitive (sentient) entities that act and interact purposefully to ensure survival, growth, and proliferation…Cells are built to evolve; they have the ability to alter their hereditary characteristics…Evolutionary novelty arises from the production of new cell and multicellular structures as a result of cellular self-modification…

Please stop pretending that Shapiro does not mean what he says.

I don't pretend. I quoted him from his book. He and you extrapolate a theory from bacterial studies. His presentation the Royal Society was a more measured presentation. And I presented it here in the past. Perhaps you should refresh your memory.

Evolution: more genomic evidence of pre-planning

by dhw, Thursday, February 18, 2021, 11:08 (1372 days ago) @ David Turell

dhw: The 285,000 years are the period of stasis, and I have just repeated my proposal that ALL stages of brain development have followed the same pattern: the brain changes when there are new activities or requirements. Once those activities are established and the requirements are fulfilled, THE BRAIN DOES NOT NEED TO CHANGE. Hence stasis, until new activities and requirements require the next change.

DAVID: You are presenting a giant brain waiting for future use, appearing and then just lying around for for 285,000 years for full use. You have not answered why so big so early. Early sapiens lived in a very similar way to erectus. What demanded such a large change if a drive cannot be identified as a requirement for living?

I don’t know why you simply ignore my explanation, although we’ve been over it so many times. Nobody knows the cause of brain expansion, but we know that each stage was followed by a period of stasis. You propose that your God popped in and operated on the brain, and then nothing happened for thousands of years because he operated in anticipation of later requirements. I wonder why he felt he had to do it so far in advance. I propose that each expansion was CAUSED by the brain responding to an unknown requirement, and once that requirement had been met, there was a long period of stasis until new requirements triggered a new expansion. And so an unknown requirement triggered the expansion to current giant size, and there were no new requirements until a few thousand years ago, but since the brain had reached a size beyond which it would have demanded major changes to the whole anatomy, the process of complexification took over from expansion, although we still see minor expansion of individual sections of the brain. Although we've been over this a dozen times, perhaps you should try once more to explain why you find this illogical.

DAVID: My pre-programming thought always included the concept that early bacteria contained coding for further advances, as shown in current research in a new entry today.

dhw: What do you mean by “coding”? Why have you switched from “mechanism”?

DAVID: Why the question. DNA is coding and DNA changes ran/runs evolution.

dhw: We don’t know what ran/runs evolution! You say God preprogrammes or personally dabbles the changes to DNA, but I - and certain scientists who are far more knowledgeable about these matters than I am – have suggested that there is a mechanism within the cell/cell community, i.e. the equivalent of a brain (possibly God-given) which organizes the changes.

DAVID: Again stretching Shapiro's findings into your cellular intelligence theory.

dhw: How many more times do you want me to quote the passages YOU quote in your own book?
Living cells are cognitive (sentient) entities that act and interact purposefully to ensure survival, growth, and proliferation…Cells are built to evolve; they have the ability to alter their hereditary characteristics…Evolutionary novelty arises from the production of new cell and multicellular structures as a result of cellular self-modification…

dhw: Please stop pretending that Shapiro does not mean what he says.

DAVID: I don't pretend. I quoted him from his book. He and you extrapolate a theory from bacterial studies.

He also used the research of other scientists – as do all theorists, including yourself. Besides, we are not discussing the truth of his theory but your accusation that I have distorted it. I have not.

DAVID: His presentation the Royal Society was a more measured presentation. And I presented it here in the past. Perhaps you should refresh your memory.

I remember it well, and there was nothing in his presentation to contradict his theory of cellular intelligence as the driving force behind evolutionary innovation. Perhaps you should refresh your memory. Alternatively, please pinpoint the passage in which he says he no longer believes that cells are cognitive entities which self-modify to produce evolutionary novelties.

Information delivery

DAVID: We are still on the outside looking in. We do not know the text of the messages or how they are interpreted by the cells. All we know is cells do talk to each other.

Essential if they are to “act and interact purposefully”, as Shapiro puts it.

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, February 18, 2021, 17:55 (1372 days ago) @ dhw

DAVID: You are presenting a giant brain waiting for future use, appearing and then just lying around for for 285,000 years for full use. You have not answered why so big so early. Early sapiens lived in a very similar way to erectus. What demanded such a large change if a drive cannot be identified as a requirement for living?

dhw: Nobody knows the cause of brain expansion, but we know that each stage was followed by a period of stasis. You propose that your God popped in and operated on the brain, and then nothing happened for thousands of years because he operated in anticipation of later requirements...I propose that each expansion was CAUSED by the brain responding to an unknown requirement, and once that requirement had been met, there was a long period of stasis until new requirements triggered a new expansion. And so an unknown requirement triggered the expansion to current giant size, and there were no new requirements until a few thousand years ago, but since the brain had reached a size beyond which it would have demanded major changes to the whole anatomy, the process of complexification took over from expansion, although we still see minor expansion of individual sections of the brain.

You totally ignore when the brain arrived in its roughly current size, few new brain uses were required as shown by the appearance of very few new artifacts. Also your implied stepwise enlargement never happened. Read the following article about our brain since Luther:

https://nautil.us/issue/96/rewired/martin-luther-rewired-your-brain?mc_cid=12a60281c6&a...

Actually don't bother. It simply describes Protestantism pushing reading for all and how our brains obviously changed by its designed plasticity.


DAVID: Again stretching Shapiro's findings into your cellular intelligence theory.

dhw: How many more times do you want me to quote the passages YOU quote in your own book?
Living cells are cognitive (sentient) entities that act and interact purposefully to ensure survival, growth, and proliferation…Cells are built to evolve; they have the ability to alter their hereditary characteristics…Evolutionary novelty arises from the production of new cell and multicellular structures as a result of cellular self-modification…

dhw: Please stop pretending that Shapiro does not mean what he says.

DAVID: I don't pretend. I quoted him from his book. He and you extrapolate a theory from bacterial studies.

dhw: He also used the research of other scientists – as do all theorists, including yourself. Besides, we are not discussing the truth of his theory but your accusation that I have distorted it. I have not.

DAVID: His presentation the Royal Society was a more measured presentation. And I presented it here in the past. Perhaps you should refresh your memory.

dhw: I remember it well, and there was nothing in his presentation to contradict his theory of cellular intelligence as the driving force behind evolutionary innovation. Perhaps you should refresh your memory. Alternatively, please pinpoint the passage in which he says he no longer believes that cells are cognitive entities which self-modify to produce evolutionary novelties.

He never did that, as you well know. He simply softened the import of his theory.


Information delivery

DAVID: We are still on the outside looking in. We do not know the text of the messages or how they are interpreted by the cells. All we know is cells do talk to each other.

dhw: Essential if they are to “act and interact purposefully”, as Shapiro puts it.

And my theory, under implanted instructions.

Evolution: more genomic evidence of pre-planning

by dhw, Friday, February 19, 2021, 10:55 (1371 days ago) @ David Turell

dhw: Nobody knows the cause of brain expansion, but we know that each stage was followed by a period of stasis. [I shan’t quote the rest, because you obviously didn’t read it properly, so I’ll try again below.]

DAVID: You totally ignore when the brain arrived in its roughly current size, few new brain uses were required as shown by the appearance of very few new artifacts. Also your implied stepwise enlargement never happened.

I don’t know how often you want me to repeat the line above: nobody knows the cause of brain expansion. For some reason you restrict yourself to the current brain, and you restrict yourself to artefacts. And stepwise enlargement refers to the different expansions from one species of human to another, not from sapiens to sapiens.

DAVID: Read the following article about our brain since Luther:
https://nautil.us/issue/96/rewired/martin-luther-rewired-your-brain?mc_cid=12a60281c6&a...
Actually don't bother. It simply describes Protestantism pushing reading for all and how our brains obviously changed by its designed plasticity.

I did bother, since your caveat illustrates a point that you desperately try to avoid, and which is repeated in the very first line of the article:
QUOTE: Your brain has been altered, neurologically rewired as you acquired a particular skill.

Rewiring in our brain is what we have called complexification, because the modern brain has stopped expanding. The principle could hardly be clearer: a particular skill results in changes to the brain. There is no known instance of the brain changing in preparation for a particular skill. Summary of my proposal: every brain change throughout hominin/homo history resulted from the effort to respond to something new: e.g. an idea, a change in conditions, a new discovery. Every expansion has been followed by a period of stasis until the next new requirement appears. The sapiens brain would also have resulted from some unknown requirement, and after a period of stasis, more new requirements were met, not by expansion (perhaps because further expansion would have been too damaging to the anatomy) but by complexification, and it is a known fact that the modern brain changes in response to new requirements, not in anticipation of them. Please explain why you find all this impossible to believe.

Shapiro

DAVID: Again stretching Shapiro's findings into your cellular intelligence theory.

dhw: (after quoting Shapiro’s theory): Please stop pretending that Shapiro does not mean what he says.

DAVID: His presentation the Royal Society was a more measured presentation. And I presented it here in the past. Perhaps you should refresh your memory.

dhw: I remember it well, and there was nothing in his presentation to contradict his theory of cellular intelligence as the driving force behind evolutionary innovation. Perhaps you should refresh your memory. Alternatively, please pinpoint the passage in which he says he no longer believes that cells are cognitive entities which self-modify to produce evolutionary novelties.

DAVID: He never did that, as you well know. He simply softened the import of his theory.

Then please stop pretending that I have stretched Shapiro’s theory, or that he did not mean what he said.

Behe

DAVID: Devolution does exist and is recognized by folks not at all related to ID. Much of the article discusses the difficulties in identifying the devolutionary mutations. Many articles are referenced in this review article. So, Behe's theory is well known outside ID.

dhw: The word used throughout this article is adaptation. Behe’s theory related to speciation, and I agree that there is no fixed dividing line between adaptation and speciation, but this does not alter the fact that in new conditions, some genes and traits will no longer be needed. That does not mean loss of traits CAUSES adaptation/speciation. It accompanies adaptation/speciation. So what are you hoping to prove?

DAVID: Obviously the article does not help us in knowing how speciation occurs. This is simply more information that adaptation can result from loss of genes, as you note.

I did not note that at all. I said that adaptation can be ACCOMPANIED by (not result from) loss of genes, and I explained why.

DAVID: The oddity is in that adaptation seems to require loss of information or a rearrangement of information so necessary previously hidden information can appear. Proof: it appears necessary future information is planted beforehand, in anticipation of need, just what you reject.

My suggestion is that it does not REQUIRE loss of information (I don’t know why you’ve switched from genes to information) but is accompanied by the loss of information/genes that are no longer relevant to the organism’s situation. And you have forgotten the fact that the process is accompanied by NEW genes. (Initially, you even denied that there were any new genes!) NEW genes were not “planted beforehand”!

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, February 19, 2021, 19:00 (1371 days ago) @ dhw

dhw: I don’t know how often you want me to repeat the line above: nobody knows the cause of brain expansion. For some reason you restrict yourself to the current brain, and you restrict yourself to artefacts. And stepwise enlargement refers to the different expansions from one species of human to another, not from sapiens to sapiens.

Just note sapiens suddenly had 200 cc more frontal lobe with no existing requirement to use it, based on any new needs for required activities of daily living, in modern terminology.


DAVID: Read the following article about our brain since Luther:
https://nautil.us/issue/96/rewired/martin-luther-rewired-your-brain?mc_cid=12a60281c6&a...
Actually don't bother. It simply describes Protestantism pushing reading for all and how our brains obviously changed by its designed plasticity.

dhw: I did bother, since your caveat illustrates a point that you desperately try to avoid, and which is repeated in the very first line of the article:
QUOTE: Your brain has been altered, neurologically rewired as you acquired a particular skill.

That line I fully accept as describing built-in plasticity changes.


dhw: Summary of my proposal: every brain change throughout hominin/homo history resulted from the effort to respond to something new: e.g. an idea, a change in conditions, a new discovery. Every expansion has been followed by a period of stasis until the next new requirement appears...Please explain why you find all this impossible to believe.

Simple. You have not explained a huge new brain appears with very little new to do. It is obviously designed for future use.


Behe

dhw: I did not note that at all. I said that adaptation can be ACCOMPANIED by (not result from) loss of genes, and I explained why.

DAVID: The oddity is in that adaptation seems to require loss of information or a rearrangement of information so necessary previously hidden information can appear. Proof: it appears necessary future information is planted beforehand, in anticipation of need, just what you reject.

dhw: My suggestion is that it does not REQUIRE loss of information (I don’t know why you’ve switched from genes to information) but is accompanied by the loss of information/genes that are no longer relevant to the organism’s situation. And you have forgotten the fact that the process is accompanied by NEW genes. (Initially, you even denied that there were any new genes!) NEW genes were not “planted beforehand”!

Genes are removed according to the article, which I have reread.

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, February 20, 2021, 10:46 (1370 days ago) @ David Turell

dhw: I don’t know how often you want me to repeat the line above: nobody knows the cause of brain expansion. For some reason you restrict yourself to the current brain, and you restrict yourself to artefacts. And stepwise enlargement refers to the different expansions from one species of human to another, not from sapiens to sapiens.

DAVID: Just note sapiens suddenly had 200 cc more frontal lobe with no existing requirement to use it, based on any new needs for required activities of daily living, in modern terminology.

There was no requirement to use it AFTER it had expanded – and that is why there was a period of stasis! And nobody knows why it expanded, but there could have been any number of causes – not just artefacts.

DAVID: Read the following article about our brain since Luther:
https://nautil.us/issue/96/rewired/martin-luther-rewired-your-brain?mc_cid=12a60281c6&a...
Actually don't bother. It simply describes Protestantism pushing reading for all and how our brains obviously changed by its designed plasticity.

dhw: I did bother, since your caveat illustrates a point that you desperately try to avoid, and which is repeated in the very first line of the article:
QUOTE: Your brain has been altered, neurologically rewired as you acquired a particular skill.

DAVID: That line I fully accept as describing built-in plasticity changes.

Of course the brain has to be plastic if it is going to change. The point is that it changes when it acquires a new skill. It does not change in anticipation of acquiring a new skill.

dhw: Summary of my proposal: every brain change throughout hominin/homo history resulted from the effort to respond to something new: e.g. an idea, a change in conditions, a new discovery. Every expansion has been followed by a period of stasis until the next new requirement appears...Please explain why you find all this impossible to believe.

DAVID: Simple. You have not explained a huge new brain appears with very little new to do. It is obviously designed for future use.

How many more times? Nobody knows what caused the initial expansion! But whatever was the cause, there were no NEW requirements (or skills) for the next 285,000 years. Now please tell us why you think your God popped in to operate on a few brains if there was no need for him to do so for the next 285,000 years.

Behe

DAVID:...Adaptation can result from loss of genes, as you note.

dhw: I did not note that at all. I said that adaptation can be ACCOMPANIED by (not result from) loss of genes, and I explained why.

DAVID: The oddity is in that adaptation seems to require loss of information or a rearrangement of information so necessary previously hidden information can appear. Proof: it appears necessary future information is planted beforehand, in anticipation of need, just what you reject.

dhw: My suggestion is that it does not REQUIRE loss of information (I don’t know why you’ve switched from genes to information) but is accompanied by the loss of information/genes that are no longer relevant to the organism’s situation. And you have forgotten the fact that the process is accompanied by NEW genes. (Initially, you even denied that there were any new genes!) NEW genes were not “planted beforehand”!

DAVID: Genes are removed according to the article, which I have reread.

The article talks of loss or deletion of genes and loss of function. Please explain why you think the loss of genes would have CAUSED adaptation rather than being the RESULT of adaptation (i.e. they were no longer needed), and please acknowledge that adaptation/speciation is accompanied by NEW genes.

Evolution: genomic evidence of parasitic help

by David Turell @, Saturday, February 20, 2021, 15:36 (1370 days ago) @ dhw

Parasitic plants change genomes:

https://science.sciencemag.org/content/371/6531/794.7?utm_campaign=ec_sci_2021-02-18&am...

"Plants that parasitize other plants include species such as mistletoe and members of the endophytic family Rafflesiaceae, which have the largest flowers of any plant but no other recognizable external structures. The impact of extreme host dependency usually results in genome streamlining. Cai et al. assembled the genome of the parasitic Rafflesia Sapria himalayana, hosts of which include members of the grape family. This parasite shows rapid genome evolution that has resulted in extensive gene loss in the chloroplast and photosynthetic machinery but retention of key genes for other organs. Unexpectedly, it has gained extensive repeat regions, resulting in a substantially larger genome than its closest free-living relatives, which may reflect horizontal gene transfer occurring during ancestral host associations."

Comment: Viruses, also parasitic, act in the same way

Evolution: genomic evidence of parasitic help

by David Turell @, Tuesday, February 23, 2021, 20:37 (1367 days ago) @ David Turell

Mistletoe helps its host plant survive:

https://phys.org/news/2021-02-parasitic-conspire-hosts-alive.html

"Like other plants, mistletoe is capable of using sunlight to create its own food, a process called photosynthesis. However, it prefers to siphon water and nutrients from other trees and shrubs, using "false roots" to invade its hosts.

"'Plants are autotrophic, they make their own food. Humans are heterotrophic, we eat it," explained UC Riverside plant-insect ecologist Paul Nabity. "Mistletoe are mostly heterotrophic, but they can switch if they want to."

"Nabity's team found when two mistletoes invade the same tree, they increase photosynthesis to get the nutrients they need, essentially sharing the tree and causing it less harm.

"'They seem to know when they're attacking the same host, and can reduce the virulence of their attack," Nabity said.

***

"When researchers removed one of two mistletoes from a branch, they saw the plant left behind did not increase its photosynthesis, and in some cases reduced its water intake.

"'It appears that the remaining mistletoe recognized it was no longer competing for resources," Nabity said.

"Often times, birds feed from and guard a fruiting mistletoe and in the process, defecate seeds into the same tree from which they came. A tree full of related mistletoes increases the parasite load for the host, though the infection may not be as severe as it otherwise would be if infected with unrelated plants.

"Nabity, who studies interactions between plants and insects, explained that communication among mistletoes is possible through a variety of methods. They are connected to a host's xylem, the tissue that trees use to move water and nutrients from the roots. It's possible the mistletoes send messages using the xylem. It's also possible they may "smell" one another.

"Plants produce chemical compounds and release them through their pores. These compounds evaporate quickly into the air, sending signals that can be received down wind.

"However it is that mistletoes communicate, Nabity says they doesn't necessarily need to be removed from infected trees.

"Forest managers have long maintained that removal will increase tree health. Though this may be true for an individual tree, mistletoe has an important role ecologically, benefitting birds and pollinators. It tends to flower in winter when nectar or pollen from many other plants is not yet available.

"Not only does mistletoe help other species, it may not hurt trees or shrubs as much as once feared."

Comment: It is not surprising that a parasite wants its host to survive. What this article really shows to me is the intricacy of the econiche in which the mistletoe plays an important role.

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, February 20, 2021, 21:31 (1370 days ago) @ dhw

DAVID: Just note sapiens suddenly had 200 cc more frontal lobe with no existing requirement to use it, based on any new needs for required activities of daily living, in modern terminology.

dhw: There was no requirement to use it AFTER it had expanded – and that is why there was a period of stasis! And nobody knows why it expanded, but there could have been any number of causes – not just artefacts.

You are trying to disarm the impression that big brain, unused, brings to anyone who thinks. "All dressed up and no place to go" is an obvious thought. Or, the earliest sapiens built a rocket for a moon launch, 315,000 years ago and just finally used it 50 years ago. This analogy fits as you wildly talk all around the obvious impression

dhw: Summary of my proposal: every brain change throughout hominin/homo history resulted from the effort to respond to something new: e.g. an idea, a change in conditions, a new discovery. Every expansion has been followed by a period of stasis until the next new requirement appears...Please explain why you find all this impossible to believe.

Since each 200 cc expansion was followed later by very new artifacts, each expansion was in preparation of later use.


dhw: How many more times? Nobody knows what caused the initial expansion! But whatever was the cause, there were no NEW requirements (or skills) for the next 285,000 years. Now please tell us why you think your God popped in to operate on a few brains if there was no need for him to do so for the next 285,000 years.

You have the same problem for an answer. Why the delay? For me God planned it for us to learn to use over time. The real question: Why so big so early? You constantly stumble around not finding a natural driving cause and history tells us there was no need for such a big brain, but not any sort of driving force is known as you try to worm around in your explanations


Behe

DAVID:...Adaptation can result from loss of genes, as you note.

dhw: I did not note that at all. I said that adaptation can be ACCOMPANIED by (not result from) loss of genes, and I explained why.

DAVID: The oddity is in that adaptation seems to require loss of information or a rearrangement of information so necessary previously hidden information can appear. Proof: it appears necessary future information is planted beforehand, in anticipation of need, just what you reject.

dhw: My suggestion is that it does not REQUIRE loss of information (I don’t know why you’ve switched from genes to information) but is accompanied by the loss of information/genes that are no longer relevant to the organism’s situation. And you have forgotten the fact that the process is accompanied by NEW genes. (Initially, you even denied that there were any new genes!) NEW genes were not “planted beforehand”!

DAVID: Genes are removed according to the article, which I have reread.

dhw: The article talks of loss or deletion of genes and loss of function. Please explain why you think the loss of genes would have CAUSED adaptation rather than being the RESULT of adaptation (i.e. they were no longer needed), and please acknowledge that adaptation/speciation is accompanied by NEW genes.

Yes, new genes happen, but loss of genes is also observed, and your question to me is is it chicken or egg first. New adaptation with loss of genes means loss of genes caused the adaptation as the authors imply in the article.

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, February 21, 2021, 11:02 (1369 days ago) @ David Turell

DAVID: Just note sapiens suddenly had 200 cc more frontal lobe with no existing requirement to use it, based on any new needs for required activities of daily living, in modern terminology.

dhw: There was no requirement to use it AFTER it had expanded – and that is why there was a period of stasis! And nobody knows why it expanded, but there could have been any number of causes – not just artefacts.

DAVID: You are trying to disarm the impression that big brain, unused, brings to anyone who thinks. "All dressed up and no place to go" is an obvious thought. Or, the earliest sapiens built a rocket for a moon launch, 315,000 years ago and just finally used it 50 years ago. This analogy fits as you wildly talk all around the obvious impression.

I have no idea what you are trying to say with your “analogy”. “All dressed up and nowhere to go” is your depiction of early sapiens: you say your God expanded the brain 315,000 years ago, but sapiens did nothing with it. Why did he expand it then if nothing was done with it for 280,000+ years? You simply refuse to consider the possibility that the pre-sapiens brain expanded 315,000 years ago as a RESULT of some new requirement (see next exchange) and then, just as with every earlier brain expansion, there was a period of stasis until the next new requirement arose, but then the brain didn’t expand (perhaps because that would have been too damaging to the rest of the body), and so it complexified instead, which is the process we are able to observe today.

dhw: Summary of my proposal: every brain change throughout hominin/homo history resulted from the effort to respond to something new: e.g. an idea, a change in conditions, a new discovery. Every expansion has been followed by a period of stasis until the next new requirement appears...Please explain why you find all this impossible to believe.

DAVID: Since each 200 cc expansion was followed later by very new artifacts, each expansion was in preparation of later use. And later,
DAVID: For me God planned it for us to learn to use over time.

Why do you say it was followed? The artefacts were found with the remains of the homos that made them. How can you possibly tell that the process of designing and making the artefacts was not the original cause of the expansion, just as in modern times it is the implementation of tasks that CAUSES complexification? (It is of course, perfectly feasible that in each earlier case complexification would have sufficed for new tasks, until eventually it reached the limits of its capacity, which then had to be increased.)

As for learning to use over time, how can you learn how to use something without there being any visible sign? Now it’s you who have your ancient sapiens mucking about with rockets! Earlier sapiens did not NEED to launch into new projects and ways of life – just as even today there are remote tribes who do not NEED central heating or to build cars and computers and rockets to Mars.

DAVID: You constantly stumble around not finding a natural driving cause and history tells us there was no need for such a big brain, but not any sort of driving force is known as you try to worm around in your explanations.

History does not know what caused the brain to expand. All we know is the brain changes when it meets new requirements. But I doubt if there are many historians who would tell you that an unknown power operated on a few brains 315,000 years ago, so that the brain-owners could learn how to use their brains by achieving nothing until 285,000+ years later.

Behe

DAVID:...Adaptation can result from loss of genes, as you note.

dhw: I did not note that at all. I said that adaptation can be ACCOMPANIED by (not result from) loss of genes, and I explained why.

DAVID: Genes are removed according to the article, which I have reread.

dhw: […] The article talks of loss or deletion of genes and loss of function. Please explain why you think the loss of genes would have CAUSED adaptation rather than being the RESULT of adaptation (i.e. they were no longer needed), and please acknowledge that adaptation/speciation is accompanied by NEW genes.

DAVID: Yes, new genes happen, but loss of genes is also observed, and your question to me is is it chicken or egg first. New adaptation with loss of genes means loss of genes caused the adaptation as the authors imply in the article.

It "means" no such thing. Please tell us why it is impossible for new adaptations (and the acquisition of new genes) to make certain existing genes redundant.

Macaques smart

DAVID: Primate brains are used for planning and cleverness by their soul/owners. We souls are just bigger and better at it, because our bigger better brain allows it.

I wish you wouldn’t use these fascinating wonders to provoke yet more repetition of the dualism v materialism discussion. Yes, in dualism the soul uses the brain to implement its thoughts. Materialists will argue that the brain is responsible for the thoughts and the implementation. This natural wonder can be used to defend either view.

Evolution: more genomic evidence of pre-planning

by David Turell @, Sunday, February 21, 2021, 21:07 (1369 days ago) @ dhw

DAVID: You are trying to disarm the impression that big brain, unused, brings to anyone who thinks. "All dressed up and no place to go" is an obvious thought. Or, the earliest sapiens built a rocket for a moon launch, 315,000 years ago and just finally used it 50 years ago. This analogy fits as you wildly talk all around the obvious impression.

dhw: you say your God expanded the brain 315,000 years ago, but sapiens did nothing with it. Why did he expand it then if nothing was done with it for 280,000+ years? You simply refuse to consider the possibility that the pre-sapiens brain expanded 315,000 years ago as a RESULT of some new requirement

What new requirement? Each next stage of human development starting at Lucy (or similar) grew 200 cc average until it stopped at sapiens with 1,200+cc alj due to frontal and prefrontal enlargement. Very full use of big brains started only in the past 10,000+ years when we left caves. Each anticipatory enlargement forms the same pattern since Lucy. Are you proposing new chance small requirements each time? Doesn't the pattern fit a plan? I chose God's agency.


DAVID: You constantly stumble around not finding a natural driving cause and history tells us there was no need for such a big brain, but not any sort of driving force is known as you try to worm around in your explanations.

dhw: History does not know what caused the brain to expand. All we know is the brain changes when it meets new requirements. But I doubt if there are many historians who would tell you that an unknown power operated on a few brains 315,000 years ago, so that the brain-owners could learn how to use their brains by achieving nothing until 285,000+ years later.'

You are offering atheistic historians to what purpose? To support your agnosticism? Theological historians would support me.


Behe

DAVID: Yes, new genes happen, but loss of genes is also observed, and your question to me is is it chicken or egg first. New adaptation with loss of genes means loss of genes caused the adaptation as the authors imply in the article.

dhw: It "means" no such thing. Please tell us why it is impossible for new adaptations (and the acquisition of new genes) to make certain existing genes redundant.

That is not my impression of the article's import, having reread it.

Evolution: more genomic evidence of pre-planning

by dhw, Monday, February 22, 2021, 13:14 (1368 days ago) @ David Turell

DAVID: You are trying to disarm the impression that big brain, unused, brings to anyone who thinks. "All dressed up and no place to go" is an obvious thought. Or, the earliest sapiens built a rocket for a moon launch, 315,000 years ago and just finally used it 50 years ago. This analogy fits as you wildly talk all around the obvious impression.

dhw: ...you say your God expanded the brain 315,000 years ago, but sapiens did nothing with it. Why did he expand it then if nothing was done with it for 280,000+ years? You simply refuse to consider the possibility that the pre-sapiens brain expanded 315,000 years ago as a RESULT of some new requirement.

DAVID: What new requirement? Each next stage of human development starting at Lucy (or similar) grew 200 cc average until it stopped at sapiens with 1,200+cc alj due to frontal and prefrontal enlargement. Very full use of big brains started only in the past 10,000+ years when we left caves. Each anticipatory enlargement forms the same pattern since Lucy. Are you proposing new chance small requirements each time? Doesn't the pattern fit a plan? I chose God's agency.

I don’t know how often you want me to repeat that NOBODY KNOWS what caused brain expansions, which is why we have different theories: new artefacts, new discoveries, changing conditions providing new problems to solve or opportunities to grasp. All we know for sure is that the modern brain changes when acquiring new skills or meeting new requirements, but now it has stopped expanding and complexifies instead. So maybe in the past, when brains were smaller, they expanded once their complexification capacity had been exceeded. It’s a theory – as is your belief that your God kept popping in to perform operations on sleeping groups of hominins and homos – but you have never yet explained why you find it inconceivable.

DAVID: You constantly stumble around not finding a natural driving cause and history tells us there was no need for such a big brain, but not any sort of driving force is known as you try to worm around in your explanations.

dhw: History does not know what caused the brain to expand. All we know is the brain changes when it meets new requirements. But I doubt if there are many historians who would tell you that an unknown power operated on a few brains 315,000 years ago, so that the brain-owners could learn how to use their brains by achieving nothing until 285,000+ years later.'

DAVID: You are offering atheistic historians to what purpose? To support your agnosticism? Theological historians would support me.

You do not have to be an atheist to support the theory I have proposed, and I have specifically focused on your illogical comments regarding the stasis: do you happen to know of any “theological historians” who argue that God operated on pre-sapiens brains 315,000 years ago so that the brain owners could learn how to use their brains by achieving nothing until approx. 305,000 (the figure keeps changing) years later?

Behe

DAVID: Yes, new genes happen, but loss of genes is also observed, and your question to me is is it chicken or egg first. New adaptation with loss of genes means loss of genes caused the adaptation as the authors imply in the article.

dhw: It "means" no such thing. Please tell us why it is impossible for new adaptations (and the acquisition of new genes) to make certain existing genes redundant.

DAVID: That is not my impression of the article's import, having reread it.

I am not asking about the article’s “import”. I am asking you to respond to my argument.

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, February 22, 2021, 18:29 (1368 days ago) @ dhw

DAVID: What new requirement? Each next stage of human development starting at Lucy (or similar) grew 200 cc average until it stopped at sapiens with 1,200+cc alj due to frontal and prefrontal enlargement. Very full use of big brains started only in the past 10,000+ years when we left caves. Each anticipatory enlargement forms the same pattern since Lucy. Are you proposing new chance small requirements each time? Doesn't the pattern fit a plan? I chose God's agency.

dhw: I don’t know how often you want me to repeat that NOBODY KNOWS what caused brain expansions, which is why we have different theories: new artefacts, new discoveries, changing conditions providing new problems to solve or opportunities to grasp. All we know for sure is that the modern brain changes when acquiring new skills or meeting new requirements, but now it has stopped expanding and complexifies instead. So maybe in the past, when brains were smaller, they expanded once their complexification capacity had been exceeded. It’s a theory – as is your belief that your God kept popping in to perform operations on sleeping groups of hominins and homos – but you have never yet explained why you find it inconceivable.

You are arguing for natural expansions, but cannot explain why each expansion is so large it exceeds all current needs and has to be used until complexification is all used up and then requires enlargement. This can obviously be interpreted as enlargement in anticipation of future need, the same as my theory. In my view such a response must come from a mind that can anticipate the future, not by natural chance. Therefore, I say God does it.


Behe

DAVID: Yes, new genes happen, but loss of genes is also observed, and your question to me is is it chicken or egg first. New adaptation with loss of genes means loss of genes caused the adaptation as the authors imply in the article.

dhw: It "means" no such thing. Please tell us why it is impossible for new adaptations (and the acquisition of new genes) to make certain existing genes redundant.

DAVID: That is not my impression of the article's import, having reread it.

dhw: I am not asking about the article’s “import”. I am asking you to respond to my argument.

You constantly scurry around to protect Darwin. The article mainly discusses loss of genes, but does note new genes also contribute to changes. I've said that.

From the article showing major import:

"The existence of a category of alleles distinguished by a derived loss of biochemical function has been described by various names: “amorphic” (Muller 1932), “loss-of-function” (Jones 1972), “nonfunctional” (Nei and Roychoudhury 1973), “knockout” (Kulkarni et al. 1999),”null” (Engel et al. 1973), “pseudogene” (Jacq et al. 1977), or simply “gene loss” (Zimmer et al. 1980). Total gene loss is the most obvious case of loss of function. Comparisons of gene content between distantly related species have revealed considerable evidence for adaptation via complete deletion of genes or even entire sets of functionally related genes (Wang et al. 2006; Blomme et al. 2006; Will et al. 2010; McLean et al. 2011; Griesmann et al. 2018; van Velzen et al. 2018; Sharma et al. 2018; Huelsmann et al. 2019; McGowen et al. 2020; Baggs et al. 2020). Pangenome analyses have revealed extensive gene content variation segregating within species. For example, the average Brachypodium distachyon genotype is missing almost half of the genes observed in the species pangenome (Gordon et al. 2017). Yet total gene loss is not the only means by which loss of function can occur. In their review of evolution by gene loss, Albalat and Cañestro (2016) point out that single mutations and many mutation types such as premature stop codons, frameshifts, splice site disruptions, and elimination of regulatory regions required for gene expression can have effects that are functionally indistinguishable from complete gene loss. Here we will discuss how the phenomenon of allelic heterogeneity—that numerous types of mutations can produce the same functionally analogous allele—is important for understanding the evolutionary dynamics and implications of adaptation by loss of function."

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, February 23, 2021, 12:14 (1367 days ago) @ David Turell

DAVID: You are arguing for natural expansions, but cannot explain why each expansion is so large it exceeds all current needs and has to be used until complexification is all used up and then requires enlargement. This can obviously be interpreted as enlargement in anticipation of future need, the same as my theory. In my view such a response must come from a mind that can anticipate the future, not by natural chance. Therefore, I say God does it.

We are going back over exactly the same ground as before. Neither chance nor anticipation is involved! So let me give you the same example as before, purely as an illustration. Small-brained homo is hunting. He knows it’s dangerous to come too close to the animal. He has an idea: a weapon he can throw from a distance. As we know from the modern brain, new skills cause changes to the brain. In designing, making, and learning how to use the new weapon, our small-brained homo causes changes to his own brain, and since his brain is so small, new cells are required to perform these tasks. Hence expansion. Once he has accomplished his task, he has no need of further expansion (i.e. there is stasis) until a new idea/circumstance/ opportunity/discovery again requires an increase in capacity, and so we have the next expansion. There is no "chance", and the small-brained homo’s brain did not expand in anticipation of making the new weapon – it expanded through the act of implementing the new idea. This is an illustration of how the process would work, and it rests firmly on the fact that we know the brain changes IN RESPONSE TO new requirements etc. But nobody knows what those requirements were in the dim and distant past. New artefacts are just ONE possibility. And to anticipate your next objection: there is NOTHING in this proposal that excludes your God, because nobody knows how this mechanism could have come into existence. Your God may have designed it.

Behe

DAVID: Yes, new genes happen, but loss of genes is also observed, and your question to me is is it chicken or egg first. New adaptation with loss of genes means loss of genes caused the adaptation as the authors imply in the article.

dhw: It "means" no such thing. Please tell us why it is impossible for new adaptations (and the acquisition of new genes) to make certain existing genes redundant.

DAVID: That is not my impression of the article's import, having reread it.

dhw: I am not asking about the article’s “import”. I am asking you to respond to my argument.

DAVID: You constantly scurry around to protect Darwin. The article mainly discusses loss of genes, but does note new genes also contribute to changes. I've said that.

It has nothing at all to do with Darwin. Please tell me why it is unreasonable to argue that new adaptations and the acquisition of new genes will make some old genes redundant. I don’t know why you’ve bothered to reproduce the whole article when all I’m asking is that you tell me why you reject what I have proposed. But I will extract one sentence from the article: “Total gene loss is the most obvious case of loss of function.” This is the nub of the argument, which you refuse to deal with. I suggest, as I did before, that adaptation results from new genes and changed functions of existing genes. LOSS OF FUNCTION means that when the organism adapts, there are genes which are no longer of any use, and so they are discarded. It does not mean that their uselessness is the CAUSE of adaptation! Please tell me what is wrong with my proposal.

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, February 23, 2021, 16:12 (1367 days ago) @ dhw

DAVID: You are arguing for natural expansions, but cannot explain why each expansion is so large it exceeds all current needs and has to be used until complexification is all used up and then requires enlargement. This can obviously be interpreted as enlargement in anticipation of future need, the same as my theory. In my view such a response must come from a mind that can anticipate the future, not by natural chance. Therefore, I say God does it.

dhw: We are going back over exactly the same ground as before. Neither chance nor anticipation is involved! So let me give you the same example as before, purely as an illustration. Small-brained homo is hunting. He knows it’s dangerous to come too close to the animal. He has an idea: a weapon he can throw from a distance. As we know from the modern brain, new skills cause changes to the brain. In designing, making, and learning how to use the new weapon, our small-brained homo causes changes to his own brain, and since his brain is so small, new cells are required to perform these tasks. Hence expansion. Once he has accomplished his task, he has no need of further expansion (i.e. there is stasis) until a new idea/circumstance/ opportunity/discovery again requires an increase in capacity, and so we have the next expansion.

Your old proposal is thinking of a new weapon, a spear, enlarged the brain. All we know from our brain is that it stays the same size and complexifies. Since new organs build on past capacities I think it is reasonable to complexification mechanisms were present in all older smaller brains. No need for expansion.


Behe

DAVID: You constantly scurry around to protect Darwin. The article mainly discusses loss of genes, but does note new genes also contribute to changes. I've said that.

dhw: It has nothing at all to do with Darwin. Please tell me why it is unreasonable to argue that new adaptations and the acquisition of new genes will make some old genes redundant. I don’t know why you’ve bothered to reproduce the whole article when all I’m asking is that you tell me why you reject what I have proposed. But I will extract one sentence from the article: “Total gene loss is the most obvious case of loss of function.” This is the nub of the argument, which you refuse to deal with. I suggest, as I did before, that adaptation results from new genes and changed functions of existing genes. LOSS OF FUNCTION means that when the organism adapts, there are genes which are no longer of any use, and so they are discarded. It does not mean that their uselessness is the CAUSE of adaptation! Please tell me what is wrong with my proposal.

Talk around it all you wish, but what you have said is in adaptation genes (information) are discarded. I've agreed new genes may be added.

Back to Behe:

https://salvomag.com/article/salvo49/darwinism-dissembled

Here’s a summation of the evolutionary picture that has emerged, according to Behe:

• The large majority of mutations are degradatory, meaning they’re mutations in which the gene is broken or blunted. Genetic information has been lost, not gained.

• Sometimes the degradation helps an organism survive.

• When the degradation confers a survival advantage, the mutation spreads throughout the population by natural selection.

In genetics, a loss of information generally translates into a loss of function, so it might seem counterintuitive to suppose that a degradatory mutation would confer a survival advantage. Behe gives several examples, though, of instances where damaged genes have been shown to aid survival. In the case of the sickle-cell gene, for example, a single amino acid change causes hemoglobin to behave in a way that inhibits growth of the malaria microbe. It’s a loss-of-function mutation, but it confers a survival advantage in malaria-prone regions.

Sickle cell is a prime example. Proper hemoglobin is damaged, degraded.

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, February 24, 2021, 12:00 (1366 days ago) @ David Turell

dhw: We are going back over exactly the same ground as before. Neither chance nor anticipation is involved! So let me give you the same example as before, purely as an illustration. Small-brained homo is hunting. He knows it’s dangerous to come too close to the animal. He has an idea: a weapon he can throw from a distance. As we know from the modern brain, new skills cause changes to the brain. In designing, making, and learning how to use the new weapon, our small-brained homo causes changes to his own brain, and since his brain is so small, new cells are required to perform these tasks. Hence expansion. Once he has accomplished his task, he has no need of further expansion (i.e. there is stasis) until a new idea/circumstance/ opportunity/discovery again requires an increase in capacity, and so we have the next expansion.

DAVID: Your old proposal is thinking of a new weapon, a spear, enlarged the brain.

Not just thinking of it, but designing it and learning how to use it.

DAVID: All we know from our brain is that it stays the same size and complexifies. Since new organs build on past capacities I think it is reasonable to complexification mechanisms were present in all older smaller brains. No need for expansion.

Of course it’s reasonable to suppose that their brains complexified. But it is equally reasonable to suppose that since their brains were smaller, there was less capacity for complexification! And so when that capacity had been reached, more cells were needed. You have yourself pointed out that even within our modern brains, certain parts expand when needed. And why on earth would your God have expanded the smaller brain if the extra capacity was not needed?

Behe

DAVID: You constantly scurry around to protect Darwin. The article mainly discusses loss of genes, but does note new genes also contribute to changes. I've said that.

dhw: It has nothing at all to do with Darwin. Please tell me why it is unreasonable to argue that new adaptations and the acquisition of new genes will make some old genes redundant. […] I will extract one sentence from the article: “Total gene loss is the most obvious case of loss of function.” This is the nub of the argument, which you refuse to deal with. I suggest, as I did before, that adaptation results from new genes and changed functions of existing genes. LOSS OF FUNCTION means that when the organism adapts, there are genes which are no longer of any use, and so they are discarded. It does not mean that their uselessness is the CAUSE of adaptation! Please tell me what is wrong with my proposal.

DAVID: Talk around it all you wish, but what you have said is in adaptation genes (information) are discarded. I've agreed new genes may be added.

I’m not talking round anything. I’m pointing out that adaptations and innovations will make certain genes unnecessary and so they will be discarded. That does not mean that the loss of genes CAUSES the adaptation/innovation

DAVID: Back to Behe:
https://salvomag.com/article/salvo49/darwinism-dissembled

Here’s a summation of the evolutionary picture that has emerged, according to Behe:
• The large majority of mutations are degradatory, meaning they’re mutations in which the gene is broken or blunted. Genetic information has been lost, not gained.
• Sometimes the degradation helps an organism survive.
• When the degradation confers a survival advantage, the mutation spreads throughout the population by natural selection.
In genetics, a loss of information generally translates into a loss of function, so it might seem counterintuitive to suppose that a degradatory mutation would confer a survival advantage. Behe gives several examples, though, of instances where damaged genes have been shown to aid survival. In the case of the sickle-cell gene, for example, a single amino acid change causes hemoglobin to behave in a way that inhibits growth of the malaria microbe. It’s a loss-of-function mutation, but it confers a survival advantage in malaria-prone regions.
Sickle cell is a prime example. Proper hemoglobin is damaged, degraded.

We were not discussing mutations! This is getting absurd. A mutation is not a loss, it is a change, and sickle cells have nothing whatsoever to do with the subject of adaptation and speciation. The sickle cell may have developed as a counter to malaria, but it is also the cause of sickness (anaemia)! (My wife had sickle cells, but fortunately only mildly). It’s good to hear you talk of the role survival plays in evolution, but you do yourself no favours by pretending that sickle cells and other examples of beneficial mutations somehow prove that the loss of genes causes adaptation and innovation.

Evolution: more genomic evidence of pre-planning

by David Turell @, Wednesday, February 24, 2021, 15:15 (1366 days ago) @ dhw

DAVID: Your old proposal is thinking of a new weapon, a spear, enlarged the brain.

dhw:Not just thinking of it, but designing it and learning how to use it.

DAVID: All we know from our brain is that it stays the same size and complexifies. Since new organs build on past capacities I think it is reasonable to complexification mechanisms were present in all older smaller brains. No need for expansion.

dhw: Of course it’s reasonable to suppose that their brains complexified. But it is equally reasonable to suppose that since their brains were smaller, there was less capacity for complexification! And so when that capacity had been reached, more cells were needed. You have yourself pointed out that even within our modern brains, certain parts expand when needed. And why on earth would your God have expanded the smaller brain if the extra capacity was not needed?

Remember, my God obviously expanded in anticipation of need, as sapiens brain history shows.


Behe

DAVID: Talk around it all you wish, but what you have said is in adaptation genes (information) are discarded. I've agreed new genes may be added.

I’m not talking round anything. I’m pointing out that adaptations and innovations will make certain genes unnecessary and so they will be discarded. That does not mean that the loss of genes CAUSES the adaptation/innovation

DAVID: Back to Behe:
https://salvomag.com/article/salvo49/darwinism-dissembled

Here’s a summation of the evolutionary picture that has emerged, according to Behe:
• The large majority of mutations are degradatory, meaning they’re mutations in which the gene is broken or blunted. Genetic information has been lost, not gained.
• Sometimes the degradation helps an organism survive.
• When the degradation confers a survival advantage, the mutation spreads throughout the population by natural selection.
In genetics, a loss of information generally translates into a loss of function, so it might seem counterintuitive to suppose that a degradatory mutation would confer a survival advantage. Behe gives several examples, though, of instances where damaged genes have been shown to aid survival. In the case of the sickle-cell gene, for example, a single amino acid change causes hemoglobin to behave in a way that inhibits growth of the malaria microbe. It’s a loss-of-function mutation, but it confers a survival advantage in malaria-prone regions.
Sickle cell is a prime example. Proper hemoglobin is damaged, degraded.

dhw: We were not discussing mutations! This is getting absurd. A mutation is not a loss, it is a change, and sickle cells have nothing whatsoever to do with the subject of adaptation and speciation. The sickle cell may have developed as a counter to malaria, but it is also the cause of sickness (anaemia)! (My wife had sickle cells, but fortunately only mildly). It’s good to hear you talk of the role survival plays in evolution, but you do yourself no favours by pretending that sickle cells and other examples of beneficial mutations somehow prove that the loss of genes causes adaptation and innovation.

Your wife had sickle trait, which means from one parent. I'll stick with Behe's interpretation that the sickle mutation was obviously degrading proper hemoglobin shape.

Evolution: cetaceans get much less cancer

by David Turell @, Wednesday, February 24, 2021, 22:34 (1366 days ago) @ David Turell

Thought to be due to a high mutation rate 0f protective genes:

https://cosmosmagazine.com/health/why-dont-whales-get-cancer/?utm_source=Cosmos+-+Maste...

"Whales, dolphins and porpoises are the world’s largest and longest-living mammals – and they can resist cancer.

"Why these cetaceans and other large animals evade this scourge has long perplexed scientists, who reason that organisms with more cells should have a higher risk of cancerous mutations – a dilemma known as Peto’s paradox.

"A molecular study, published in the Proceedings of the Royal Society B, has now found cetaceans have rapidly evolving genes that suppress tumours.

"A team of international scientists from Chile, the UK and the US explored how natural selection drove the evolution of 1077 tumour suppressor genes in cetacean ancestors and compared them with those of 15 other mammal species, including humans.

"The turnover of the genes – the rate at which they were gained and lost through mutation– was nearly 2.4 times higher in cetaceans than most other mammals, and highest in baleen whales (filter-feeding species that include blue, humpback and right whales).

"The gene variants found in those mammals “could have favoured the evolution of their particular traits of anti-cancer resistance, gigantism and longevity,” write Daniela Tejada-Martinez, from the Universidad Austral de Chile, and co-authors.

"The study found signs of positive selection in genes regulating DNA-damage, tumour spreading and immunity. It also found 71 genes with duplications associated with fighting cancer, such as DNA repair, metabolism, cell death and ageing and 11 duplicate genes associated with longevity.

“'Overall, these results provide evolutionary evidence that natural selection in tumour suppressor genes could act on species with large body sizes and extended lifespan,” the authors write, “providing novel insights into the genetic basis of disease resistance.'”

Comment: These most unusual animals that obviously require the most designing might have this designed also. I wonder if this applies to manatees and other aquatic mammals

Evolution: more genomic evidence of pre-planning

by dhw, Thursday, February 25, 2021, 12:39 (1365 days ago) @ David Turell

DAVID: Your old proposal is thinking of a new weapon, a spear, enlarged the brain.

dhw: Not just thinking of it, but designing it and learning how to use it.

DAVID: All we know from our brain is that it stays the same size and complexifies. Since new organs build on past capacities I think it is reasonable to complexification mechanisms were present in all older smaller brains. No need for expansion.

dhw: Of course it’s reasonable to suppose that their brains complexified. But it is equally reasonable to suppose that since their brains were smaller, there was less capacity for complexification! And so when that capacity had been reached, more cells were needed. You have yourself pointed out that even within our modern brains, certain parts expand when needed. And why on earth would your God have expanded the smaller brain if the extra capacity was not needed?

DAVID: Remember, my God obviously expanded in anticipation of need, as sapiens brain history shows.

So your God popped in to perform an expansion operation on pre-sapiens, and they didn’t need it for 280,000+ years. I can’t help wondering why your God didn’t just pop in and do the operation when it was needed. Please don’t tell us that we needed 280,000+ years to learn how to use it, though we didn’t actually use it. Meanwhile, please do tell us why you find the above bolded section unreasonable.

DAVID (quoting Behe): Sickle cell is a prime example. Proper hemoglobin is damaged, degraded.

dhw: We were not discussing mutations! This is getting absurd. A mutation is not a loss, it is a change, and sickle cells have nothing whatsoever to do with the subject of adaptation and speciation. The sickle cell may have developed as a counter to malaria, but it is also the cause of sickness (anaemia)! (My wife had sickle cells, but fortunately only mildly). It’s good to hear you talk of the role survival plays in evolution, but you do yourself no favours by pretending that sickle cells and other examples of beneficial mutations somehow prove that the loss of genes causes adaptation and innovation.

DAVID: Your wife had sickle trait, which means from one parent. I'll stick with Behe's interpretation that the sickle mutation was obviously degrading proper hemoglobin shape.

And you totally ignore the subject of our discussion, which is “MORE GENOMIC EVIDENCE OF PRE-PLANNING”. We were not discussing mutations and sickle cells, but the theory that adaptation and speciation RESULT from loss of genes, whereas I suggest that loss of genes is the RESULT of successful adaptation and speciation, because the genes are no longer needed. Please explain why you reject this proposal.

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, February 25, 2021, 23:40 (1365 days ago) @ dhw

DAVID: All we know from our brain is that it stays the same size and complexifies. Since new organs build on past capacities I think it is reasonable to complexification mechanisms were present in all older smaller brains. No need for expansion.

dhw: Of course it’s reasonable to suppose that their brains complexified. But it is equally reasonable to suppose that since their brains were smaller, there was less capacity for complexification! And so when that capacity had been reached, more cells were needed. You have yourself pointed out that even within our modern brains, certain parts expand when needed. And why on earth would your God have expanded the smaller brain if the extra capacity was not needed?

DAVID: Remember, my God obviously expanded in anticipation of need, as sapiens brain history shows.

dhw: So your God popped in to perform an expansion operation on pre-sapiens, and they didn’t need it for 280,000+ years. I can’t help wondering why your God didn’t just pop in and do the operation when it was needed. Please don’t tell us that we needed 280,000+ years to learn how to use it, though we didn’t actually use it. Meanwhile, please do tell us why you find the above bolded section unreasonable.

In my opinion existing earlier brain cells don't know how to make the brain enlarge. It is your theory, not mine. I believe God did it.


DAVID (quoting Behe): Sickle cell is a prime example. Proper hemoglobin is damaged, degraded.

dhw: We were not discussing mutations! This is getting absurd. A mutation is not a loss, it is a change, and sickle cells have nothing whatsoever to do with the subject of adaptation and speciation. The sickle cell may have developed as a counter to malaria, but it is also the cause of sickness (anaemia)! (My wife had sickle cells, but fortunately only mildly). It’s good to hear you talk of the role survival plays in evolution, but you do yourself no favours by pretending that sickle cells and other examples of beneficial mutations somehow prove that the loss of genes causes adaptation and innovation.

DAVID: Your wife had sickle trait, which means from one parent. I'll stick with Behe's interpretation that the sickle mutation was obviously degrading proper hemoglobin shape.

dhw: And you totally ignore the subject of our discussion, which is “MORE GENOMIC EVIDENCE OF PRE-PLANNING”. We were not discussing mutations and sickle cells, but the theory that adaptation and speciation RESULT from loss of genes, whereas I suggest that loss of genes is the RESULT of successful adaptation and speciation, because the genes are no longer needed. Please explain why you reject this proposal.

Because the article quoted gave the impression that like Behe loss of genes caused the adaptations. ID folks who led me to the article had the same impression. You don't like the implication so you will keep on struggling about it.

Evolution: more genomic evidence of pre-planning

by dhw, Friday, February 26, 2021, 14:08 (1364 days ago) @ David Turell

DAVID: All we know from our brain is that it stays the same size and complexifies. Since new organs build on past capacities I think it is reasonable to complexification mechanisms were present in all older smaller brains. No need for expansion.

dhw: Of course it’s reasonable to suppose that their brains complexified. But it is equally reasonable to suppose that since their brains were smaller, there was less capacity for complexification! And so when that capacity had been reached, more cells were needed. You have yourself pointed out that even within our modern brains, certain parts expand when needed. And why on earth would your God have expanded the smaller brain if the extra capacity was not needed?

DAVID: Remember, my God obviously expanded in anticipation of need, as sapiens brain history shows.

dhw: So your God popped in to perform an expansion operation on pre-sapiens, and they didn’t need it for 280,000+ years. I can’t help wondering why your God didn’t just pop in and do the operation when it was needed. Please don’t tell us that we needed 280,000+ years to learn how to use it, though we didn’t actually use it. Meanwhile, please do tell us why you find the above bolded section unreasonable.

DAVID: In my opinion existing earlier brain cells don't know how to make the brain enlarge. It is your theory, not mine. I believe God did it.

I know you believe God either programmed every single evolutionary change 3.8 billion years ago or stepped in to perform operations on millions of different individual life forms, including humans and their brains. But if you believe your God designed a mechanism that enabled brain cells to complexify without his popping in to operate on each individual brain, why can’t you believe that the same mechanism might enable brain cells to add to their number when they need to do so?

Behe

DAVID: Your wife had sickle trait, which means from one parent. I'll stick with Behe's interpretation that the sickle mutation was obviously degrading proper hemoglobin shape.

dhw: And you totally ignore the subject of our discussion, which is “MORE GENOMIC EVIDENCE OF PRE-PLANNING”. We were not discussing mutations and sickle cells, but the theory that adaptation and speciation RESULT from loss of genes, whereas I suggest that loss of genes is the RESULT of successful adaptation and speciation, because the genes are no longer needed. Please explain why you reject this proposal.

DAVID: Because the article quoted gave the impression that like Behe loss of genes caused the adaptations. ID folks who led me to the article had the same impression. You don't like the implication so you will keep on struggling about it.

The article discussed on Tuesday/Wednesday did not even mention adaptation. It was concerned with mutations and loss of function which might in some cases prove advantageous – hence the sickle cell. And you still haven’t explained why you regard it as illogical to propose that a successful adaptation/innovation will result in some genes losing their original function and either changing their function or disappearing – i.e. loss of genes results from adaptation and does not cause it.

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, February 26, 2021, 15:37 (1364 days ago) @ dhw

DAVID: In my opinion existing earlier brain cells don't know how to make the brain enlarge. It is your theory, not mine. I believe God did it.

dhw: I know you believe God either programmed every single evolutionary change 3.8 billion years ago or stepped in to perform operations on millions of different individual life forms, including humans and their brains. But if you believe your God designed a mechanism that enabled brain cells to complexify without his popping in to operate on each individual brain, why can’t you believe that the same mechanism might enable brain cells to add to their number when they need to do so?

Because just adding neurons willy-nilly will not anticipate preparation for future use. 200 cc of brain must chav e special organization which is present in the forebrain with five tiers ranked.


Behe

DAVID: Your wife had sickle trait, which means from one parent. I'll stick with Behe's interpretation that the sickle mutation was obviously degrading proper hemoglobin shape.

dhw: And you totally ignore the subject of our discussion, which is “MORE GENOMIC EVIDENCE OF PRE-PLANNING”. We were not discussing mutations and sickle cells, but the theory that adaptation and speciation RESULT from loss of genes, whereas I suggest that loss of genes is the RESULT of successful adaptation and speciation, because the genes are no longer needed. Please explain why you reject this proposal.

DAVID: Because the article quoted gave the impression that like Behe loss of genes caused the adaptations. ID folks who led me to the article had the same impression. You don't like the implication so you will keep on struggling about it.

dhw: The article discussed on Tuesday/Wednesday did not even mention adaptation. It was concerned with mutations and loss of function which might in some cases prove advantageous – hence the sickle cell. And you still haven’t explained why you regard it as illogical to propose that a successful adaptation/innovation will result in some genes losing their original function and either changing their function or disappearing – i.e. loss of genes results from adaptation and does not cause it.

My view is opposite: loss of genes causes the adaptation.

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, February 27, 2021, 09:04 (1364 days ago) @ David Turell

DAVID: In my opinion existing earlier brain cells don't know how to make the brain enlarge. It is your theory, not mine. I believe God did it.

dhw: I know you believe God either programmed every single evolutionary change 3.8 billion years ago or stepped in to perform operations on millions of different individual life forms, including humans and their brains. But if you believe your God designed a mechanism that enabled brain cells to complexify without his popping in to operate on each individual brain, why can’t you believe that the same mechanism might enable brain cells to add to their number when they need to do so?

DAVID: Because just adding neurons willy-nilly will not anticipate preparation for future use. 200 cc of brain must chav e special organization which is present in the forebrain with five tiers ranked.

“Adding neurons willy-nilly” is NOT what I am proposing! The neurons are added to serve a particular purpose – namely, to implement the new ideas or to cope with the new conditions which exceed the existing capacity. In our simple example, they are added as small-brained homo designs, makes and uses his new artefact. In your theory, however, your God pops in to operate on the brains of a few small-brained pre-sapiens in “anticipation” of something or the other that they will invent 280,000+ years later. THAT is willy-nilly.

Behe

dhw: The article discussed on Tuesday/Wednesday did not even mention adaptation. It was concerned with mutations and loss of function which might in some cases prove advantageous – hence the sickle cell. And you still haven’t explained why you regard it as illogical to propose that a successful adaptation/innovation will result in some genes losing their original function and either changing their function or disappearing – i.e. loss of genes results from adaptation and does not cause it.

DAVID: My view is opposite: loss of genes causes the adaptation.

The mutation article had nothing to do with adaptation. The previous article did, and I know you believe that loss of genes causes adaptation. Now please explain why you find my counter-proposal (now bolded) illogical.

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, February 27, 2021, 14:39 (1363 days ago) @ dhw

DAVID: Because just adding neurons willy-nilly will not anticipate preparation for future use. 200 cc of brain must chav e special organization which is present in the forebrain with five tiers ranked.

dhw: “Adding neurons willy-nilly” is NOT what I am proposing! The neurons are added to serve a particular purpose – namely, to implement the new ideas or to cope with the new conditions which exceed the existing capacity. In our simple example, they are added as small-brained homo designs, makes and uses his new artefact. In your theory, however, your God pops in to operate on the brains of a few small-brained pre-sapiens in “anticipation” of something or the other that they will invent 280,000+ years later. THAT is willy-nilly.

You didn't answer the concept the neurons have to be added in a special structural form, therefore by design. Your own bias overwhelms you.


Behe

dhw: The article discussed on Tuesday/Wednesday did not even mention adaptation. It was concerned with mutations and loss of function which might in some cases prove advantageous – hence the sickle cell. And you still haven’t explained why you regard it as illogical to propose that a successful adaptation/innovation will result in some genes losing their original function and either changing their function or disappearing – i.e. loss of genes results from adaptation and does not cause it.

DAVID: My view is opposite: loss of genes causes the adaptation.

dhw: The mutation article had nothing to do with adaptation. The previous article did, and I know you believe that loss of genes causes adaptation. Now please explain why you find my counter-proposal (now bolded) illogical.

Our view, like cell functions, is from the outside of the process. It is again 50/50 probability, and I chose Behe's interpretation.

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, February 28, 2021, 09:07 (1363 days ago) @ David Turell

DAVID: Because just adding neurons willy-nilly will not anticipate preparation for future use. 200 cc of brain must chav e special organization which is present in the forebrain with five tiers ranked.

dhw: “Adding neurons willy-nilly” is NOT what I am proposing! The neurons are added to serve a particular purpose – namely, to implement the new ideas or to cope with the new conditions which exceed the existing capacity. In our simple example, they are added as small-brained homo designs, makes and uses his new artefact. In your theory, however, your God pops in to operate on the brains of a few small-brained pre-sapiens in “anticipation” of something or the other that they will invent 280,000+ years later. THAT is willy-nilly.

DAVID: You didn't answer the concept the neurons have to be added in a special structural form, therefore by design. Your own bias overwhelms you.

You said “willy-nilly”, and I said “to serve a particular purpose”! Of course they are in a special structural form, and of course they are designed! But instead of your God preprogramming every single new structural form 3.8 billion years ago, or popping in to perform an operation on a group of sleeping homos to add the neurons necessary for tasks to be accomplished 280,000+ years later, we have intelligent cells (possibly designed by your God) adding the neurons necessary to accomplish tasks in their here and now. Please explain why you think neurons designed to serve a particular purpose are “willy-nilly”, whereas neurons designed for some unknown future task are designed in a special structural form.

Behe

dhw: […] you still haven’t explained why you regard it as illogical to propose that a successful adaptation/innovation will result in some genes losing their original function and either changing their function or disappearing – i.e. loss of genes results from adaptation and does not cause it.

DAVID: My view is opposite: loss of genes causes the adaptation.

dhw: […] I know you believe that loss of genes causes adaptation. Now please explain why you find my counter-proposal (now bolded) illogical.

DAVID: Our view, like cell functions, is from the outside of the process. It is again 50/50 probability, and I chose Behe's interpretation.

The fact that you reject my theory that adaptation will RESULT in some genes losing their function and therefore being discarded (as opposed to their loss CAUSING adaptation) does not explain why you regard my theory as illogical.

Evolution: more genomic evidence of pre-planning

by David Turell @, Sunday, February 28, 2021, 15:27 (1362 days ago) @ dhw

DAVID: Because just adding neurons willy-nilly will not anticipate preparation for future use. 200 cc of brain must chav e special organization which is present in the forebrain with five tiers ranked.

dhw: “Adding neurons willy-nilly” is NOT what I am proposing! The neurons are added to serve a particular purpose – namely, to implement the new ideas or to cope with the new conditions which exceed the existing capacity. In our simple example, they are added as small-brained homo designs, makes and uses his new artefact. In your theory, however, your God pops in to operate on the brains of a few small-brained pre-sapiens in “anticipation” of something or the other that they will invent 280,000+ years later. THAT is willy-nilly.

DAVID: You didn't answer the concept the neurons have to be added in a special structural form, therefore by design. Your own bias overwhelms you.

dhw: You said “willy-nilly”, and I said “to serve a particular purpose”! Of course they are in a special structural form, and of course they are designed! But instead of your God preprogramming every single new structural form 3.8 billion years ago, or popping in to perform an operation on a group of sleeping homos to add the neurons necessary for tasks to be accomplished 280,000+ years later, we have intelligent cells (possibly designed by your God) adding the neurons necessary to accomplish tasks in their here and now. Please explain why you think neurons designed to serve a particular purpose are “willy-nilly”, whereas neurons designed for some unknown future task are designed in a special structural form.

You are talking around the issue of design. Our frontal cortex has a very specific design which is required for us to be as mentally smart as we are. If erectus had this particular design of five tiered layers of neurons, sapiens would not have been needed. How did erectus' neurons know how to do this? Only God could do it as you reluctantly drag in the possibility. And finally there is no survival need for our particular brain, to kill your favorite reason for evolution.


Behe

dhw: […] you still haven’t explained why you regard it as illogical to propose that a successful adaptation/innovation will result in some genes losing their original function and either changing their function or disappearing – i.e. loss of genes results from adaptation and does not cause it.

DAVID: My view is opposite: loss of genes causes the adaptation.

dhw: […] I know you believe that loss of genes causes adaptation. Now please explain why you find my counter-proposal (now bolded) illogical.

DAVID: Our view, like cell functions, is from the outside of the process. It is again 50/50 probability, and I chose Behe's interpretation.

dhw: The fact that you reject my theory that adaptation will RESULT in some genes losing their function and therefore being discarded (as opposed to their loss CAUSING adaptation) does not explain why you regard my theory as illogical.

Not illogical. A different view of existing thought as the article showed.

Evolution: more genomic evidence of pre-planning

by dhw, Monday, March 01, 2021, 13:19 (1361 days ago) @ David Turell

DAVID: You didn't answer the concept the neurons have to be added in a special structural form, therefore by design. [...]

dhw: You said “willy-nilly”, and I said “to serve a particular purpose”! Of course they are in a special structural form, and of course they are designed! But instead of your God preprogramming every single new structural form 3.8 billion years ago, or popping in to perform an operation on a group of sleeping homos to add the neurons necessary for tasks to be accomplished 280,000+ years later, we have intelligent cells (possibly designed by your God) adding the neurons necessary to accomplish tasks in their here and now. Please explain why you think neurons designed to serve a particular purpose are “willy-nilly”, whereas neurons designed for some unknown future task are designed in a special structural form.

DAVID: You are talking around the issue of design. Our frontal cortex has a very specific design which is required for us to be as mentally smart as we are. If erectus had this particular design of five tiered layers of neurons, sapiens would not have been needed.

If all the smaller brained hominins and homos had had the bigger brains, then the bigger brains would not have been needed! My whole point is that smaller brains became bigger when more cells were needed to perform tasks which had never been performed before. There is no “issue of design”. The issue is your insistence that your God had to step in and perform operations in anticipation of new requirements, whereas I propose that cells designed their own restructuring and reinforcement (including the frontal cortex) in response to new requirements. That is to say, not "willy-nilly" - in contrast to your theory which has your God expanding brains for no particular reason 280,000+ years before sapiens thinks of something new to do with them.

DAVID: How did erectus' neurons know how to do this? Only God could do it as you reluctantly drag in the possibility.

I do not “reluctantly drag” God in. I am an agnostic. And I find it perfectly feasible that your God could have designed the intelligence which enables cells/cell communities to complexify (as you believe they do) and to add to their number when this is needed (which you refuse even to consider) .

DAVID: And finally there is no survival need for our particular brain, to kill your favorite reason for evolution.

As we have agreed over and over again, there was no “survival need” for any organism beyond bacteria. But as conditions changed, multicellular communities cooperated not only to survive (adaptation) but also to find new ways of improving their chances of survival (innovation). I have no doubt that the same process applied to the evolving human brain: the earliest humans would also have had survival as the main motive for their adaptations and inventions, and even today there are sapiens whose activities centre mainly on survival.

Behe

dhw: […] you still haven’t explained why you regard it as illogical to propose that a successful adaptation/innovation will result in some genes losing their original function and either changing their function or disappearing – i.e. loss of genes results from adaptation and does not cause it. […]

DAVID: Not illogical. A different view of existing thought as the article showed.

Thank you for accepting that my proposal is logical. We could have saved ourselves a few weeks of discussion if you had agreed from the outset, but it’s always pleasing to drag a yes out of you in the end!:-)

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, March 01, 2021, 15:59 (1361 days ago) @ dhw

DAVID: You are talking around the issue of design. Our frontal cortex has a very specific design which is required for us to be as mentally smart as we are. If erectus had this particular design of five tiered layers of neurons, sapiens would not have been needed.

dhw: If all the smaller brained hominins and homos had had the bigger brains, then the bigger brains would not have been needed! My whole point is that smaller brains became bigger when more cells were needed to perform tasks which had never been performed before. There is no “issue of design”. The issue is your insistence that your God had to step in and perform operations in anticipation of new requirements, whereas I propose that cells designed their own restructuring and reinforcement (including the frontal cortex) in response to new requirements. That is to say, not "willy-nilly" - in contrast to your theory which has your God expanding brains for no particular reason 280,000+ years before sapiens thinks of something new to do with them.

You forgot to mention your fallback point the cells got an intelligence from God to invent the necessary changes. Design requires intellient anticipation of needs.


DAVID: How did erectus' neurons know how to do this? Only God could do it as you reluctantly drag in the possibility.

dhw: I do not “reluctantly drag” God in. I am an agnostic. And I find it perfectly feasible that your God could have designed the intelligence which enables cells/cell communities to complexify (as you believe they do) and to add to their number when this is needed (which you refuse even to consider) .

You are so close to accepting God as the designer. I'll consider the hippocampus for providing new cells, the only place in the brain found to do it !!!


DAVID: And finally there is no survival need for our particular brain, to kill your favorite reason for evolution.

dhw: As we have agreed over and over again, there was no “survival need” for any organism beyond bacteria. But as conditions changed, multicellular communities cooperated not only to survive (adaptation) but also to find new ways of improving their chances of survival (innovation). I have no doubt that the same process applied to the evolving human brain: the earliest humans would also have had survival as the main motive for their adaptations and inventions, and even today there are sapiens whose activities centre mainly on survival.

Of course we have to eat to survive, make money to eat, etc. We all have the motive. You are still struggling to save the Darwin concept of survival to cause evolution , while having given it up in your comment about bacteria who have always survived, as God planned.

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, March 02, 2021, 13:00 (1360 days ago) @ David Turell

dhw: The issue is your insistence that your God had to step in and perform operations in anticipation of new requirements, whereas I propose that cells designed their own restructuring and reinforcement (including the frontal cortex) in response to new requirements. That is to say, not "willy-nilly" - in contrast to your theory which has your God expanding brains for no particular reason 280,000+ years before sapiens thinks of something new to do with them.

DAVID: You forgot to mention your fallback point the cells got an intelligence from God to invent the necessary changes. Design requires intellient anticipation of needs.

It is not a fallback point (I am an agnostic), but your response is a good way of avoiding all the points I have raised. In answer to your final remark, I do not believe that adaptation and innovation require gazing into a crystal ball. I believe that organisms adapt and innovate IN RESPONSE to new requirements and not in anticipation of them, just as the human brain is known to RESPOND to new requirements and not to change in anticipation of them.

dhw: […] I find it perfectly feasible that your God could have designed the intelligence which enables cells/cell communities to complexify (as you believe they do) and to add to their number when this is needed (which you refuse even to consider).

DAVID: […] I'll consider the hippocampus for providing new cells, the only place in the brain found to do it !!!

[…] If the hippocampus can produce new cells, it is not unreasonable to suppose that the addition of cells in earlier brains followed the same procedure.

DAVID: And finally there is no survival need for our particular brain, to kill your favorite reason for evolution.

dhw: As we have agreed over and over again, there was no “survival need” for any organism beyond bacteria. But as conditions changed, multicellular communities cooperated not only to survive (adaptation) but also to find new ways of improving their chances of survival (innovation). I have no doubt that the same process applied to the evolving human brain: the earliest humans would also have had survival as the main motive for their adaptations and inventions, and even today there are sapiens whose activities centre mainly on survival.

DAVID: Of course we have to eat to survive, make money to eat, etc. We all have the motive. You are still struggling to save the Darwin concept of survival to cause evolution , while having given it up in your comment about bacteria who have always survived, as God planned.

I have not “given it up”, and the Darwin concept does not need “saving”. You have tried to conflate two forms of “survival”: 1) the continuation of life, for which you claim that the sapiens brain was not “needed”. I have pointed out that no other life form was “needed” for the continuation of life, since bacteria have survived, and so that argument can’t be used to justify your anthropocentrism. 2) I don’t see how you can possibly believe that the motive for adaptations is NOT to enable individual species to survive changes in their living conditions, and by the same token innovations cannot possibly survive if they do not fit in with living conditions. Here my proposal is that they improve chances of survival. Our prime example has always been pre-whale legs turning into flippers, as flippers offer a better chance of survival in the water.

Brain expansion

QUOTE: "According to the researchers, the decrease in the size of game and the need to hunt small, swift animals forced humans to display cunning and boldness—an evolutionary process that demanded increased volume of the human brain and later led to the development of language enabling the exchange of information about where prey could be found. The theory claims that all means served one end: body energy conservation.
[…] In addition to brain volume, evolutionary pressure caused humans to use language, fire and sophisticated tools such as bow and arrow, adapt their arms and shoulders to the tasks of throwing and hurling and their bodies to the prolonged chase, improve their stone tools, domesticate dogs and ultimately also domesticate the game itself and turn to agriculture.
'"

DAVID: Note my last bold. ("To date, no unifying explanation has been proposed for the major phenomena in human prehistory." ) There is no explanation why the sapiens brain arrived 315,000 years ago. Note the gap in time: mammoths among others went extinct 20,000 years ago. Totally disconnected Darwin-think. dhw will love it, despite its topsy-turvy mish-mash of thought. Obviously the article reviewers were all Darwinist.

As usual, you think that by using the word “Darwin” you can automatically relieve yourself of the need to discuss the reasoning. We keep agreeing that nobody knows why the brain expanded. I would add “improving methods of survival” to “body energy conservation”, and I don’t think “evolutionary pressure” explains all the improvements that would have required additional brain cells. I would add new ideas and discoveries to the list of influences on human progress. The pre-sapiens brain would have expanded for precisely the same reasons. There is no topsy-turvy mish-mash – only your refusal to follow a perfectly straightforward argument: the brain expanded because it needed additional cells to RESPOND to new requirements.

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, March 02, 2021, 15:34 (1360 days ago) @ dhw

DAVID: You forgot to mention your fallback point the cells got an intelligence from God to invent the necessary changes. Design requires intelligent anticipation of needs.

dhw: It is not a fallback point (I am an agnostic), but your response is a good way of avoiding all the points I have raised. In answer to your final remark, I do not believe that adaptation and innovation require gazing into a crystal ball. I believe that organisms adapt and innovate IN RESPONSE to new requirements and not in anticipation of them, just as the human brain is known to RESPOND to new requirements and not to change in anticipation of them.

Forgetting brain stasis. Our huge brain did nothing much for over 300,000 years. It obvoiusly came prepared for the future


dhw: […] I find it perfectly feasible that your God could have designed the intelligence which enables cells/cell communities to complexify (as you believe they do) and to add to their number when this is needed (which you refuse even to consider).

DAVID: […] I'll consider the hippocampus for providing new cells, the only place in the brain found to do it !!!

dhw: […] If the hippocampus can produce new cells, it is not unreasonable to suppose that the addition of cells in earlier brains followed the same procedure.

You are confused. The hippocampus memory center is deep in the brain; the cells you want tp appear must rise in the frontal and prefrontal areas, but don't.


DAVID: Of course we have to eat to survive, make money to eat, etc. We all have the motive. You are still struggling to save the Darwin concept of survival to cause evolution , while having given it up in your comment about bacteria who have always survived, as God planned.

dhw: You have tried to conflate two forms of “survival”: 1) the continuation of life, for which you claim that the sapiens brain was not “needed”. I have pointed out that no other life form was “needed” for the continuation of life, since bacteria have survived, and so that argument can’t be used to justify your anthropocentrism.

I make the opposite point. As bacteria have survived through all time of living organisms, why did evolution have to happen?

dhw: 2) I don’t see how you can possibly believe that the motive for adaptations is NOT to enable individual species to survive changes in their living conditions, and by the same token innovations cannot possibly survive if they do not fit in with living conditions. Here my proposal is that they improve chances of survival. Our prime example has always been pre-whale legs turning into flippers, as flippers offer a better chance of survival in the water.

I see a different God motive: securing that life does not disappear, the reverse of your thought. Survival never drives evolution


Brain expansion

DAVID: Note my last bold. ("To date, no unifying explanation has been proposed for the major phenomena in human prehistory." ) There is no explanation why the sapiens brain arrived 315,000 years ago. Note the gap in time: mammoths among others went extinct 20,000 years ago. Totally disconnected Darwin-think. dhw will love it, despite its topsy-turvy mish-mash of thought. Obviously the article reviewers were all Darwinist.

dhw: As usual, you think that by using the word “Darwin” you can automatically relieve yourself of the need to discuss the reasoning. We keep agreeing that nobody knows why the brain expanded. I would add “improving methods of survival” to “body energy conservation”, and I don’t think “evolutionary pressure” explains all the improvements that would have required additional brain cells. I would add new ideas and discoveries to the list of influences on human progress. The pre-sapiens brain would have expanded for precisely the same reasons. There is no topsy-turvy mish-mash – only your refusal to follow a perfectly straightforward argument: the brain expanded because it needed additional cells to RESPOND to new requirements.

Exactly the reverse of my view. I follow your argument and fully disagree. God gave us the giant brain in preparation for future use 315,000 years later. Your usual response has been to describe stasis but avoiding discussing its real meaning of foresight in preparation ..

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, March 03, 2021, 11:22 (1359 days ago) @ David Turell

dhw: I do not believe that adaptation and innovation require gazing into a crystal ball. I believe that organisms adapt and innovate IN RESPONSE to new requirements and not in anticipation of them, just as the human brain is known to RESPOND to new requirements and not to change in anticipation of them.

DAVID: Forgetting brain stasis. Our huge brain did nothing much for over 300,000 years. It obvoiusly came prepared for the future.

And in response to the article which supports my theory, you wrote the same objection:

DAVID: God gave us the giant brain in preparation for future use 315,000 years later. Your usual response has been to describe stasis but avoiding discussing its real meaning of foresight in preparation.

Round we go. I keep disputing your interpretation of its "real meaning"! You have your God operating on a group of pre-sapiens for no immediate purpose, or “willy-nilly”, 300,000 years before they would need the extra cells. I have a group of pre-sapiens needing the cells to perform new tasks (= a “real meaning”, though we can only theorize about what the tasks might have been). That, I propose, is the CAUSE of expansion, but having performed the tasks, they did not have any further new requirements (as in all the earlier stages of expansion) for thousands of years.

dhw: […] I find it perfectly feasible that your God could have designed the intelligence which enables cells/cell communities to complexify (as you believe they do) and to add to their number when this is needed (which you refuse even to consider).

DAVID: […] I'll consider the hippocampus for providing new cells, the only place in the brain found to do it !!!

dhw: […] If the hippocampus can produce new cells, it is not unreasonable to suppose that the addition of cells in earlier brains followed the same procedure.

DAVID: You are confused. The hippocampus memory center is deep in the brain; the cells you want to appear must rise in the frontal and prefrontal areas, but don't.

Because they don’t need to! Complexification can cope. But in the early days, when complexification could not cope, all relevant sections of the brain would have required extra cells to perform new tasks. Why else would they have expanded? You have your God popping in to perform the necessary operations. I have the cell communities (as possibly designed by your God) doing exactly what we know they do now – namely, changing the existing brain. In their case through adding to their number – in our case through complexifying, except apparently in the hippocampus, where new cells are still required. Or do you think your God is still popping in to give your hippocampus the required number?

dhw: You have tried to conflate two forms of “survival”: 1) the continuation of life, for which you claim that the sapiens brain was not “needed”. I have pointed out that no other life form was “needed” for the continuation of life, since bacteria have survived, and so that argument can’t be used to justify your anthropocentrism.

DAVID: I make the opposite point. As bacteria have survived through all time of living organisms, why did evolution have to happen?

That is not the “opposite point”! You argue that evolution did not have to happen, and therefore your God must have made it happen in order to design H. sapiens! I then ask you why he designed all the millions of life forms which did not have to happen and which had no connection with humans, and you dodge the question.

dhw: 2) I don’t see how you can possibly believe that the motive for adaptations is NOT to enable individual species to survive changes in their living conditions, and by the same token innovations cannot possibly survive if they do not fit in with living conditions. Here my proposal is that they improve chances of survival. Our prime example has always been pre-whale legs turning into flippers, as flippers offer a better chance of survival in the water.

DAVID: I see a different God motive: securing that life does not disappear, the reverse of your thought. Survival never drives evolution.

It is not the reverse of my thought. It is No 1) above. And you try to ignore the fact that life consists of individual living organisms. It is not a being in itself. And individual living organisms adapt for the sole purpose of surviving. You tell us (under “Miscellany”) that flippers are not adaptation but speciation, to “allow mammals into living in water”. Thank you. I would suggest that the flippers therefore improved the whales’ chances of surviving in water. What other purpose did they serve, since you also tell us that they were not an advance but only a “side step” in evolution?

Evolution: more genomic evidence of pre-planning

by David Turell @, Wednesday, March 03, 2021, 16:15 (1359 days ago) @ dhw

DAVID: God gave us the giant brain in preparation for future use 315,000 years later. Your usual response has been to describe stasis but avoiding discussing its real meaning of foresight in preparation.

dhw: Round we go. I keep disputing your interpretation of its "real meaning"! You have your God operating on a group of pre-sapiens for no immediate purpose, or “willy-nilly”, 300,000 years before they would need the extra cells. I have a group of pre-sapiens needing the cells to perform new tasks (= a “real meaning”, though we can only theorize about what the tasks might have been). That, I propose, is the CAUSE of expansion, but having performed the tasks, they did not have any further new requirements (as in all the earlier stages of expansion) for thousands of years.

Again a description of some imagined minor event to create a huge brain, which wasn't used in full capacity for 300,000 years later. You haven't ever answered that obvious problem in logical interpretation.

dhw: […] If the hippocampus can produce new cells, it is not unreasonable to suppose that the addition of cells in earlier brains followed the same procedure.

DAVID: You are confused. The hippocampus memory center is deep in the brain; the cells you want to appear must rise in the frontal and prefrontal areas, but don't.

Because they don’t need to! Complexification can cope. But in the early days, when complexification could not cope, all relevant sections of the brain would have required extra cells to perform new tasks. Why else would they have expanded?

The brain obviously over expanded is my point you never answer, just ignore.


dhw: You have tried to conflate two forms of “survival”: 1) the continuation of life, for which you claim that the sapiens brain was not “needed”. I have pointed out that no other life form was “needed” for the continuation of life, since bacteria have survived, and so that argument can’t be used to justify your anthropocentrism.

DAVID: I make the opposite point. As bacteria have survived through all time of living organisms, why did evolution have to happen?

dhw: That is not the “opposite point”! You argue that evolution did not have to happen, and therefore your God must have made it happen in order to design H. sapiens! I then ask you why he designed all the millions of life forms which did not have to happen and which had no connection with humans, and you dodge the question.

No dodge. He chose to evolve, but you refuse to accept that.


dhw: 2) I don’t see how you can possibly believe that the motive for adaptations is NOT to enable individual species to survive changes in their living conditions, and by the same token innovations cannot possibly survive if they do not fit in with living conditions. Here my proposal is that they improve chances of survival. Our prime example has always been pre-whale legs turning into flippers, as flippers offer a better chance of survival in the water.

DAVID: I see a different God motive: securing that life does not disappear, the reverse of your thought. Survival never drives evolution.

dhw: It is not the reverse of my thought. It is No 1) above. And you try to ignore the fact that life consists of individual living organisms. It is not a being in itself. And individual living organisms adapt for the sole purpose of surviving. You tell us (under “Miscellany”) that flippers are not adaptation but speciation, to “allow mammals into living in water”. Thank you. I would suggest that the flippers therefore improved the whales’ chances of surviving in water. What other purpose did they serve, since you also tell us that they were not an advance but only a “side step” in evolution?

Difference: yes all beings adapt to survive, but God made the mechanism of being alive so tough life goes to every dangerous environment and survives. Survival does not drive evolution is my main point behind this discussion, a counter to Darwin theory.

Evolution: more genomic evidence of pre-planning

by dhw, Thursday, March 04, 2021, 11:34 (1358 days ago) @ David Turell

dhw: having performed the tasks, they [first sapiens] did not have any further new requirements (as in all the earlier stages of expansion) for thousands of years.

DAVID: Again a description of some imagined minor event to create a huge brain, which wasn't used in full capacity for 300,000 years later. You haven't ever answered that obvious problem in logical interpretation.

NOBODY knows the cause of the expansions. All we do know is that the modern brain undergoes changes IN RESPONSE to new requirements. There is even one section of the modern brain that expands. Expansion in response to an unknown requirement followed by a period of no new requirements (as in all past examples of expansion) seems to me to be more logical than an unknown power called God operating on a group of brains 300,000 years before they needed to be expanded.

dhw: in the early days, when complexification could not cope, all relevant sections of the brain would have required extra cells to perform new tasks. Why else would they have expanded?

DAVID: The brain obviously over expanded is my point you never answer, just ignore.

What are you referring to? Shrinkage? Are you saying your God made a mistake, and gave us too big a brain? We dealt with that long ago. After the final expansion, complexification proved so efficient that certain cells were no longer needed.

survival

DAVID: As bacteria have survived through all time of living organisms, why did evolution have to happen?

dhw: […] You argue that evolution did not have to happen, and therefore your God must have made it happen in order to design H. sapiens! I then ask you why he designed all the millions of life forms which did not have to happen and which had no connection with humans, and you dodge the question.

DAVID: No dodge. He chose to evolve, but you refuse to accept that.

That is NOT what I refuse to accept! If he exists, then he chose the system of evolution for whatever may have been his purpose. But that does not mean (a) that he directly designed every species, and (b) that he did so for the sole purpose of designing H. sapiens. That is what you dodge in post after post.

dhw: 2) I don’t see how you can possibly believe that the motive for adaptations is NOT to enable individual species to survive changes in their living conditions, […] Our prime example has always been pre-whale legs turning into flippers, as flippers offer a better chance of survival in the water.

DAVID: I see a different God motive: securing that life does not disappear, the reverse of your thought. Survival never drives evolution.

dhw: […] you try to ignore the fact that life consists of individual living organisms. It is not a being in itself. And individual living organisms adapt for the sole purpose of surviving. You tell us (under “Miscellany”) that flippers are not adaptation but speciation, to “allow mammals into living in water”. Thank you. I would suggest that the flippers therefore improved the whales’ chances of surviving in water. What other purpose did they serve, since you also tell us that they were not an advance but only a “side step” in evolution?

DAVID: Difference: yes all beings adapt to survive, but God made the mechanism of being alive so tough life goes to every dangerous environment and survives. Survival does not drive evolution is my main point behind this discussion, a counter to Darwin theory.

So the purpose of the mechanism your God designed was to enable all beings to survive, but the purpose for doing something is not a driving force? Once more, please tell us what OTHER purpose you think drove your God to design the whales’ flippers.

DAVID: God advances evolution according to his plan; He is the driving force, not survival. He has made sure the 'process of living' survives as shown by extremophiles.

These are not alternatives! The driving force is the motive. Again: What was the driving force behind the - or, if you like, God's -invention of the flipper?

Symbiosis by bacteria

DAVID: just another evidence that life has God-given methods to survive and that survival does not drive evolution.

So God has given life forms all the different means of survival which have led from bacteria to the brontosaurus, the duckbilled platypus and us, but the reason why he gave them the means of survival was not to enable them to survive. (Though oops, 99% of them have not survived.) Just to clarify, though – it’s the quest for survival that drives evolution, not “survival”, which is the hoped-for outcome of the quest.

Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: How is this learned, since it implies conceptual thinking? How is the length of time that one plays possum determined? Perhaps God designed this mechanism.

I suggest that a particularly clever possum had a great idea, and lots of other life forms cottoned on or had the same idea. The purpose of the strategy: survival. Like other forms of adaptation, including physical changes that enable organisms to survive in a changing environment.

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, March 04, 2021, 15:31 (1358 days ago) @ dhw

DAVID: Again a description of some imagined minor event to create a huge brain, which wasn't used in full capacity for 300,000 years later. You haven't ever answered that obvious problem in logical interpretation.

dhw: ... Expansion in response to an unknown requirement followed by a period of no new requirements (as in all past examples of expansion) seems to me to be more logical than an unknown power called God operating on a group of brains 300,000 years before they needed to be expanded.

Again no answer to the impression the new-sized brain gives: giant with little to do. All dressed up and no where to go. You can't give a natural reason for 200 cc jumps, producing more capacity than required at the time of the jump.


survival

DAVID: No dodge. He chose to evolve, but you refuse to accept that.

dhw: That is NOT what I refuse to accept! If he exists, then he chose the system of evolution for whatever may have been his purpose. But that does not mean (a) that he directly designed every species, and (b) that he did so for the sole purpose of designing H. sapiens. That is what you dodge in post after post.

No dodge. God designed every advancing level of evolutions complexities, eventually humans.


DAVID: Difference: yes all beings adapt to survive, but God made the mechanism of being alive so tough life goes to every dangerous environment and survives. Survival does not drive evolution is my main point behind this discussion, a counter to Darwin theory.

dhw: So the purpose of the mechanism your God designed was to enable all beings to survive, but the purpose for doing something is not a driving force? Once more, please tell us what OTHER purpose you think drove your God to design the whales’ flippers.

So they could enter a watery environment, a new mode of living, survival not involved..


Symbiosis by bacteria

DAVID: just another evidence that life has God-given methods to survive and that survival does not drive evolution.

dhw: So God has given life forms all the different means of survival which have led from bacteria to the brontosaurus, the duckbilled platypus and us, but the reason why he gave them the means of survival was not to enable them to survive. (Though oops, 99% of them have not survived.) Just to clarify, though – it’s the quest for survival that drives evolution, not “survival”, which is the hoped-for outcome of the quest.

You forgot death is built in to make room, and the bush is big to be eaten for energy.


Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: How is this learned, since it implies conceptual thinking? How is the length of time that one plays possum determined? Perhaps God designed this mechanism.

dhw: I suggest that a particularly clever possum had a great idea, and lots of other life forms cottoned on or had the same idea. The purpose of the strategy: survival. Like other forms of adaptation, including physical changes that enable organisms to survive in a changing environment.

You didn't answer my questions, but assumed possums could reason, you usual response.

Evolution: more genomic evidence of pre-planning

by dhw, Friday, March 05, 2021, 11:56 (1357 days ago) @ David Turell

DAVID: Again a description of some imagined minor event to create a huge brain, which wasn't used in full capacity for 300,000 years later. You haven't ever answered that obvious problem in logical interpretation.

dhw: ... Expansion in response to an unknown requirement followed by a period of no new requirements (as in all past examples of expansion) seems to me to be more logical than an unknown power called God operating on a group of brains 300,000 years before they needed to be expanded.

DAVID: Again no answer to the impression the new-sized brain gives: giant with little to do. All dressed up and no where to go. You can't give a natural reason for 200 cc jumps, producing more capacity than required at the time of the jump.

That is your own theory! It is you who have your God expanding the brain before expansion is required (sapiens was "all dressed up and nowhere to go” 300,000 years before the bigger brain was needed). I keep suggesting that there WERE natural reasons for the jumps (though nobody knows what they were, just as nobody knows how expansion happened): e.g. new ideas, inventions, environmental conditions, discoveries – which required additional capacity. Once that capacity had been acquired through meeting the new requirements, there was stasis until the next set of requirements exceeded the existing capacity. The sapiens expansion would have followed the same pattern: expansion to meet new requirements, and then stasis – but when new requirements arose, the brain increased its ability to complexify, presumably because further expansion would have entailed huge changes to the rest of the anatomy.

survival

DAVID: No dodge. He chose to evolve, but you refuse to accept that.

dhw: That is NOT what I refuse to accept! If he exists, then he chose the system of evolution for whatever may have been his purpose. But that does not mean (a) that he directly designed every species, and (b) that he did so for the sole purpose of designing H. sapiens. That is what you dodge in post after post.

DAVID: No dodge. God designed every advancing level of evolutions complexities, eventually humans.

Still dodging! For the thousandth time: Why would your God have directly designed the brontosaurus, and the millions of other life forms that had no connection with humans, if his only purpose was to design H. sapiens?

DAVID: Difference: yes all beings adapt to survive, but God made the mechanism of being alive so tough life goes to every dangerous environment and survives. Survival does not drive evolution is my main point behind this discussion, a counter to Darwin theory.

dhw: So the purpose of the mechanism your God designed was to enable all beings to survive, but the purpose for doing something is not a driving force? Once more, please tell us what OTHER purpose you think drove your God to design the whales’ flippers.

DAVID: So they could enter a watery environment, a new mode of living, survival not involved.

How does a physical change enabling a life form to live in a new environment not involve surviving in the new environment?

Symbiosis by bacteria

DAVID: just another evidence that life has God-given methods to survive and that survival does not drive evolution.

dhw: So God has given life forms all the different means of survival which have led from bacteria to the brontosaurus, the duckbilled platypus and us, but the reason why he gave them the means of survival was not to enable them to survive. (Though oops, 99% of them have not survived.) Just to clarify, though – it’s the quest for survival that drives evolution, not “survival”, which is the hoped-for outcome of the quest.

DAVID: You forgot death is built in to make room, and the bush is big to be eaten for energy.

So your God gave life forms the ability to survive, but he also made sure they didn’t survive. My proposal is that if God exists, he gave them the mechanism for survival, and some succeeded in surviving by adapting or innovating (e.g. the pre-whale’s legs became flippers). The purpose of the adaptations and innovations was to enable the respective life forms to survive. You have agreed that it was NOT in order to advance evolution. So please tell us what other PURPOSE you can think of as the driving force behind the adaptations and innovations. As for the bush, ALL life forms require food, and so they devise new means of getting food or avoiding becoming food, i.e. to SURVIVE.

Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: How is this learned, since it implies conceptual thinking? How is the length of time that one plays possum determined? Perhaps God designed this mechanism.

dhw: I suggest that a particularly clever possum had a great idea, and lots of other life
forms cottoned on or had the same idea. The purpose of the strategy: to "stay alive", which means to SURVIVE. Like other forms of adaptation, including physical changes that enable organisms to SURVIVE in a changing environment.

DAVID: You didn't answer my questions, but assumed possums could reason, you usual response.

The intelligence of possums IS my answer. And maybe your God designed the intelligence of possums and every other creature that uses strategies, lifestyles or physical adaptations in order to SURVIVE.

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, March 05, 2021, 15:25 (1357 days ago) @ dhw

DAVID: Again no answer to the impression the new-sized brain gives: giant with little to do. All dressed up and no where to go. You can't give a natural reason for 200 cc jumps, producing more capacity than required at the time of the jump.

dhw: ...I keep suggesting that there WERE natural reasons for the jumps (though nobody knows what they were, just as nobody knows how expansion happened): e.g. new ideas, inventions, environmental conditions, discoveries – which required additional capacity.

But this not ever explain, why vast overcapacity is created. You always ignore that point.

dhw: The sapiens expansion would have followed the same pattern: expansion to meet new requirements, and then stasis – but when new requirements arose, the brain increased its ability to complexify...

Complexification works because the huge brain had no need for further expansion. You explanation is a twisted escape from a logical view of the obviously anticipatory expansion.


survival

DAVID: No dodge. God designed every advancing level of evolutions complexities, eventually humans.

dhw: Still dodging! For the thousandth time: Why would your God have directly designed the brontosaurus, and the millions of other life forms that had no connection with humans, if his only purpose was to design H. sapiens?

Same weird twist. God chose to design/evolve all living forms with humans as His final goal.

dhw: So the purpose of the mechanism your God designed was to enable all beings to survive, but the purpose for doing something is not a driving force? Once more, please tell us what OTHER purpose you think drove your God to design the whales’ flippers.

DAVID: So they could enter a watery environment, a new mode of living, survival not involved.

dhw: How does a physical change enabling a life form to live in a new environment not involve surviving in the new environment?

Simple. God guarantees survival wherever life tries to exist. Survival does not drive evolution


Symbiosis by bacteria

DAVID: You forgot death is built in to make room, and the bush is big to be eaten for energy.

dhw: So your God gave life forms the ability to survive, but he also made sure they didn’t survive. My proposal is that if God exists, he gave them the mechanism for survival, and some succeeded in surviving by adapting or innovating (e.g. the pre-whale’s legs became flippers). The purpose of the adaptations and innovations was to enable the respective life forms to survive. You have agreed that it was NOT in order to advance evolution. So please tell us what other PURPOSE you can think of as the driving force behind the adaptations and innovations. As for the bush, ALL life forms require food, and so they devise new means of getting food or avoiding becoming food, i.e. to SURVIVE.

Life simply goes from one generation to the next, survival of forms guaranteed by God's designs.


Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: How is this learned, since it implies conceptual thinking? How is the length of time that one plays possum determined? Perhaps God designed this mechanism.

dhw: I suggest that a particularly clever possum had a great idea, and lots of other life forms cottoned on or had the same idea. The purpose of the strategy: to "stay alive", which means to SURVIVE. Like other forms of adaptation, including physical changes that enable organisms to SURVIVE in a changing environment.

DAVID: You didn't answer my questions, but assumed possums could reason, you usual response.

dhw: The intelligence of possums IS my answer. And maybe your God designed the intelligence of possums and every other creature that uses strategies, lifestyles or physical adaptations in order to SURVIVE.

You have possums conceptualizing necessary time intervals. How very sentient of them! I'll stick with God's help.

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, March 06, 2021, 10:05 (1356 days ago) @ David Turell

DAVID: Again no answer to the impression the new-sized brain gives: giant with little to do. All dressed up and no where to go. You can't give a natural reason for 200 cc jumps, producing more capacity than required at the time of the jump.

dhw: I keep suggesting that there WERE natural reasons for the jumps (though nobody knows what they were, just as nobody knows how expansion happened): e.g. new ideas, inventions, environmental conditions, discoveries – which required additional capacity.

DAVID: But this not ever explain, why vast overcapacity is created. You always ignore that point.

You always ignore my answers to that point, but what overcapacity are you talking about? Prior to sapiens, there is no overcapacity. Yet again: in my theory, the brain expands in order to meet a new requirement. Then there is stasis until the next idea, discovery etc. requires more cells. In the case of sapiens, the same process would have applied, but when the bigger brain had to meet new requirements 300,000 years later, it increased its capacity to complexify, presumably because further expansion would have required major changes to the anatomy. If you are thinking of shrinkage, this occurred because the process of complexification became so efficient that certain cells were not required. Now please tell us what vast overcapacity you are referring to, and why you think your God created it.


DAVID: Complexification works because the huge brain had no need for further expansion. You explanation is a twisted escape from a logical view of the obviously anticipatory expansion.

Your explanation is a “twisted escape” from the known fact that the brain changes in response to new requirements and not in anticipation of them. I propose that the response in pre-sapiens was the addition of cells when they were needed. Sapiens’ response is complexification when it is needed, and I have offered a logical reason above why expansion was no longer possible, other than in isolated sections of the brain.

David's theory of evolution

DAVID: No dodge. God designed every advancing level of evolutions complexities, eventually humans.

dhw: Still dodging! For the thousandth time: Why would your God have directly designed the brontosaurus, and the millions of other life forms that had no connection with humans, if his only purpose was to design H. sapiens?

DAVID: Same weird twist. God chose to design/evolve all living forms with humans as His final goal.

Same deliberate dodge. How does your statement come to mean that every living form in life’s history was “part of the goal of evolving [= designing] humans” when 99% of forms had no connection with humans? (See also “theodicy”).

survival

dhw: So the purpose of the mechanism your God designed was to enable all beings to survive, but the purpose for doing something is not a driving force? Once more, please tell us what OTHER purpose you think drove your God to design the whales’ flippers.

DAVID: So they could enter a watery environment, a new mode of living, survival not involved.

dhw: How does a physical change enabling a life form to live in a new environment not involve surviving in the new environment?

DAVID: Simple. God guarantees survival wherever life tries to exist. Survival does not drive evolution.

Life does not try to exist. Organisms try to exist. And if organisms adapt to new environments, it means they try to go on existing. To go on existing = survival, even if that entails “a new mode of living”.

Symbiosis by bacteria

DAVID: You forgot death is built in to make room, and the bush is big to be eaten for energy.

dhw: So your God gave life forms the ability to survive, but he also made sure they didn’t survive. […] As for the bush, ALL life forms require food, and so they devise new means of getting food or avoiding becoming food, i.e. to SURVIVE.

DAVID: Life simply goes from one generation to the next, survival of forms guaranteed by God's designs.

99% of forms have not survived. And common descent indicates that life doesn’t simply go from one generation to the next, but it also branches out into new forms. Why? Because organisms look for new ways of surviving. Once more, please tell us why pre-whales’ legs became flippers, if it was not to enable them to improve their chances of survival in a new environment.

Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: How is this learned, since it implies conceptual thinking? How is the length of time that one plays possum determined? Perhaps God designed this mechanism. […]

dhw: […] The intelligence of possums IS my answer. And maybe your God designed the intelligence of possums and every other creature that uses strategies, lifestyles or physical adaptations in order to SURVIVE.

DAVID: You have possums conceptualizing necessary time intervals. How very sentient of them! I'll stick with God's help.

I don’t know about “conceptualizing necessary time intervals”. I don’t think it requires super intelligence for an animal to perceive when the coast is clear. And YES in block capitals, I do believe that our fellow creatures are sentient. What makes you think they are not?

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, March 06, 2021, 15:30 (1356 days ago) @ dhw

DAVID: But this not ever explain, why vast overcapacity is created. You always ignore that point.

dhw: You always ignore my answers to that point, but what overcapacity are you talking about? Now please tell us what vast overcapacity you are referring to, and why you think your God created it.

You apparently cannot recognize over-capacity when it exists in as newly arrived form of a brain. Your stasis discussion is entirely off point and simply descriptive of what happens next after the huge new form of brain arrives on the scene. It is as if yo0u bought a new small car with a 600 hp engine. For what purpose?>

David's theory of evolution

DAVID: No dodge. God designed every advancing level of evolutions complexities, eventually humans.

dhw: Still dodging! For the thousandth time: Why would your God have directly designed the brontosaurus, and the millions of other life forms that had no connection with humans, if his only purpose was to design H. sapiens?

DAVID: Same weird twist. God chose to design/evolve all living forms with humans as His final goal.

dhw: Same deliberate dodge. How does your statement come to mean that every living form in life’s history was “part of the goal of evolving [= designing] humans” when 99% of forms had no connection with humans? (See also “theodicy”).

Same weird chopping up of evolution into unrelated segments. Evolution proceeds from bacteria to humans without stopping. Under common descent we are direct results from bacteria.


Symbiosis by bacteria

DAVID: Life simply goes from one generation to the next, survival of forms guaranteed by God's designs.

dhw: 99% of forms have not survived. And common descent indicates that life doesn’t simply go from one generation to the next, but it also branches out into new forms. Why? Because organisms look for new ways of surviving. Once more, please tell us why pre-whales’ legs became flippers, if it was not to enable them to improve their chances of survival in a new environment.

Of course God had to give them flippers if they were to enter a watery environment.


Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: How is this learned, since it implies conceptual thinking? How is the length of time that one plays possum determined? Perhaps God designed this mechanism. […]

dhw: […] The intelligence of possums IS my answer. And maybe your God designed the intelligence of possums and every other creature that uses strategies, lifestyles or physical adaptations in order to SURVIVE.

DAVID: You have possums conceptualizing necessary time intervals. How very sentient of them! I'll stick with God's help.

dhw: I don’t know about “conceptualizing necessary time intervals”. I don’t think it requires super intelligence for an animal to perceive when the coast is clear. And YES in block capitals, I do believe that our fellow creatures are sentient. What makes you think they are not?

Sentient, yes, conceptualizing, no.

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, March 07, 2021, 17:04 (1355 days ago) @ David Turell

DAVID: But this not ever explain, why vast overcapacity is created. You always ignore that point.

dhw: You always ignore my answers to that point, but what overcapacity are you talking about? Now please tell us what vast overcapacity you are referring to, and why you think your God created it.

DAVID: You apparently cannot recognize over-capacity when it exists in as newly arrived form of a brain. Your stasis discussion is entirely off point and simply descriptive of what happens next after the huge new form of brain arrives on the scene. It is as if you bought a new small car with a 600 hp engine. For what purpose?

My point is that the brains were NOT oversized. Are you referring here only to H. sapiens, and are you referring to shrinkage? I have explained both ad nauseam. In my theory, the pre-sapiens brain, like all brains beforehand, needed to expand in order to meet unknown new requirements which the smaller brain could not meet. It expanded to the size needed for the new requirements, and although complexification would no doubt have taken place on a minor scale (as with all brains beforehand), it was not till 300,000 years later that new requirements required further changes, but as the brain had reached maximum size for the anatomy, complexification took over almost completely. And it was so efficient that some cells were no longer needed. Hence shrinkage. Now please tell us why your God produced what you consider to be oversized brains 300,000 years before they were needed! And please don’t say it was so that we could learn to use them, since obviously we didn’t learn to use them until 300,000 years later!

David's theory of evolution

DAVID: God chose to design/evolve all living forms with humans as His final goal.

dhw: Same deliberate dodge. How does your statement come to mean that every living form in life’s history was “part of the goal of evolving [= designing] humans” when 99% of forms had no connection with humans? (See also “theodicy”).

DAVID: Same weird chopping up of evolution into unrelated segments. Evolution proceeds from bacteria to humans without stopping. Under common descent we are direct results from bacteria.

You keep agreeing that evolution branches off into countless unrelated segments, or are you saying that lizards, which have no connection with mammals, were “part of the goal of evolving humans”? Please stop restricting evolution to the one line from bacteria to humans.

Symbiosis by bacteria

AVID: Life simply goes from one generation to the next, survival of forms guaranteed by God's designs.

dhw: 99% of forms have not survived. And common descent indicates that life doesn’t simply go from one generation to the next, but it also branches out into new forms. Why? Because organisms look for new ways of surviving. Once more, please tell us why pre-whales’ legs became flippers, if it was not to enable them to improve their chances of survival in a new environment.

DAVID: Of course God had to give them flippers if they were to enter a watery environment.

I’ll skip the question of whether God did it or not, and simply ask you again whether you do or don’t agree that the purpose of the flippers was/is to enable whales to improve their chances of survival in the water. If not, what was their purpose?

Immortal bacteria

DAVID: two major points. Some forms are designed to be able to live forever. The need to survive does not drive evolution. That 99% are gone is of no import. And here must be adequate food supply for life to thrive.

The need to survive did not drive immortal bacteria to change into something else because they are fine as they are! Now please tell us what purpose adaptations serve if not to improve organisms' chances of surviving in new conditions. And please remember you said that whales’ flippers did not advance evolution. 99% of life forms unconnected with humans denote the absurdity of arguing that they were part of the goal of evolving humans. And there had to be adequate food for EVERY life form that ever lived, and 99% of these had no connection with humans.

Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: How is this learned, since it implies conceptual thinking? How is the length of time that one plays possum determined? Perhaps God designed this mechanism. […]

dhw: […] The intelligence of possums IS my answer. And maybe your God designed the intelligence of possums and every other creature that uses strategies, lifestyles or physical adaptations in order to SURVIVE.

DAVID: You have possums conceptualizing necessary time intervals. How very sentient of them! I'll stick with God's help.

dhw: I don’t know about “conceptualizing necessary time intervals”. I don’t think it requires super intelligence for an animal to perceive when the coast is clear. And YES in block capitals, I do believe that our fellow creatures are sentient. What makes you think they are not?

DAVID: Sentient, yes, conceptualizing, no.

I do not imagine possums dreaming up abstract ideas, if that’s what you mean. And I do not think they would need to. Acting dead and waiting till the danger has passed does not seem to me to require human levels of conceptualization.

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, March 08, 2021, 01:11 (1355 days ago) @ dhw


DAVID: You apparently cannot recognize over-capacity when it exists in as newly arrived form of a brain. Your stasis discussion is entirely off point and simply descriptive of what happens next after the huge new form of brain arrives on the scene. It is as if you bought a new small car with a 600 hp engine. For what purpose?

dhw: My point is that the brains were NOT oversized. Are you referring here only to H. sapiens, and are you referring to shrinkage? I have explained both ad nauseam. In my theory, the pre-sapiens brain, like all brains beforehand, needed to expand in order to meet unknown new requirements which the smaller brain could not meet. It expanded to the size needed for the new requirements,

You still miss the point. The new sapiens brain is way over expanded for the needs of that time as then proven by much latter massive use. You are totally twisted backwards in your view, which is why I discarded the remainder of your thought.

David's theory of evolution

DAVID: God chose to design/evolve all living forms with humans as His final goal.

dhw: Same deliberate dodge. How does your statement come to mean that every living form in life’s history was “part of the goal of evolving [= designing] humans” when 99% of forms had no connection with humans? (See also “theodicy”).

DAVID: Same weird chopping up of evolution into unrelated segments. Evolution proceeds from bacteria to humans without stopping. Under common descent we are direct results from bacteria.

dhw: You keep agreeing that evolution branches off into countless unrelated segments, or are you saying that lizards, which have no connection with mammals, were “part of the goal of evolving humans”? Please stop restricting evolution to the one line from bacteria to humans.

'
Of course massive new branches for food supply.


Symbiosis by bacteria

DAVID: Of course God had to give them flippers if they were to enter a watery environment.

dhw: I’ll skip the question of whether God did it or not, and simply ask you again whether you do or don’t agree that the purpose of the flippers was/is to enable whales to improve their chances of survival in the water. If not, what was their purpose?

God provided survival in all environments is my point.


Immortal bacteria

DAVID: two major points. Some forms are designed to be able to live forever. The need to survive does not drive evolution. That 99% are gone is of no import. And here must be adequate food supply for life to thrive.

dhw: The need to survive did not drive immortal bacteria to change into something else because they are fine as they are! Now please tell us what purpose adaptations serve if not to improve organisms' chances of surviving in new conditions.

My only point is God guaranteed survival

Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"


DAVID: You have possums conceptualizing necessary time intervals. How very sentient of them! I'll stick with God's help.

dhw: I don’t know about “conceptualizing necessary time intervals”. I don’t think it requires super intelligence for an animal to perceive when the coast is clear. And YES in block capitals, I do believe that our fellow creatures are sentient. What makes you think they are not?

DAVID: Sentient, yes, conceptualizing, no.

dhw: I do not imagine possums dreaming up abstract ideas, if that’s what you mean. And I do not think they would need to. Acting dead and waiting till the danger has passed does not seem to me to require human levels of conceptualization.

How did possums arrive at the conclusion that playing dead would fool predators, when generally running away fast is the reasonable alternative??

Evolution: more genomic evidence of pre-planning

by dhw, Monday, March 08, 2021, 13:58 (1354 days ago) @ David Turell

dhw: In my theory, the pre-sapiens brain, like all brains beforehand, needed to expand in order to meet unknown new requirements which the smaller brain could not meet. It expanded to the size needed for the new requirements.

DAVID: You still miss the point. The new sapiens brain is way over expanded for the needs of that time as then proven by much latter massive use. You are totally twisted backwards in your view, which is why I discarded the remainder of your thought.

Of course you discard the remainder of my thought, because you persist in ignoring the fact that the modern brain complexifies instead of expanding any further.This suggests that once it had expanded, the volume met all requirements. It did not “overexpand”, and once again you have ignored my explanation of shrinkage. You also close your eyes to the fact that nobody knows the cause of ANY of the expansions that preceded our own. Hence the many different theories (new ideas, new artefacts, new environment, upright posture, new discoveries etc.). You simply have your God popping in to perform operations on existing brains, and you still haven’t told us why he would have “overexpanded” ours 300,000 years before we needed the capacity. (“Learning to use it” is meaningless since you tell us we didn’t use it until then.)

David’s theory of evolution

dhw: You keep agreeing that evolution branches off into countless unrelated segments, or are you saying that lizards, which have no connection with mammals, were “part of the goal of evolving humans”? Please stop restricting evolution to the one line from bacteria to humans.

DAVID: Of course massive new branches for food supply.

Yes, yes, extinct life forms and their food supplies that had no connection with humans and yet were apparently specially designed as part of the goal of evolving [= designing] humans. In your own words: “The current bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.”

Symbiosis by bacteria

dhw: I’ll …simply ask you again whether you do or don’t agree that the purpose of the flippers was/is to enable whales to improve their chances of survival in the water. If not, what was their purpose?

DAVID: God provided survival in all environments is my point.

That is not an answer. It’s MEANS of survival that are provided, and I’m asking this question because you insist that the quest for survival plays no part in evolution. Were the new flippers “provided” as a new means of survival or not? If they were, then it is clearly absurd to argue that the quest for survival plays no part in evolution.

Immortal bacteria

DAVID: two major points. Some forms are designed to be able to live forever. The need to survive does not drive evolution. That 99% are gone is of no import. And here must be adequate food supply for life to thrive.

dhw: The need to survive did not drive immortal bacteria to change into something else because they are fine as they are! Now please tell us what purpose adaptations serve if not to improve organisms' chances of surviving in new conditions. And please remember you said that whales’ flippers did not advance evolution. 99% of life forms unconnected with humans denote the absurdity of arguing that they were part of the goal of evolving humans. And there had to be adequate food for EVERY life form that ever lived, and 99% of these had no connection with humans.

DAVID: My only point is God guaranteed survival.

You made three other points, I answered them all, and you have ignored my answers.

Playing possum

QUOTE: “Playing dead seems to be a very good way to stay alive.'"

DAVID: You have possums conceptualizing necessary time intervals. How very sentient of them! I'll stick with God's help. [...]


dhw: [...] I do not imagine possums dreaming up abstract ideas, if that’s what you mean. And I do not think they would need to. Acting dead and waiting till the danger has passed does not seem to me to require human levels of conceptualization.

DAVID: How did possums arrive at the conclusion that playing dead would fool predators, when generally running away fast is the reasonable alternative?

Because maybe one clever possum realized he could not outrun a predator, and hit on the brilliant idea of pretending to be dead. It worked. And when something works, it generally catches on. I find it hard to imagine your God watching with interest as an eagle prepares to swoop down, and then quickly sending instructions to the possum to lie down and close its eyes.

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, March 08, 2021, 15:24 (1354 days ago) @ dhw

DAVID: You still miss the point. The new sapiens brain is way over expanded for the needs of that time as then proven by much latter massive use. You are totally twisted backwards in your view, which is why I discarded the remainder of your thought.

dhw: Of course you discard the remainder of my thought, because you persist in ignoring the fact that the modern brain complexifies instead of expanding any further. This suggests that once it had expanded, the volume met all requirements.

What requirements? They have to be the needs for that time period. However if we look at the difference between erectus and sapiens the current activities of daily living (a term used today about folks) the difference is slight. So a new model Volkswagen is not given a 650 hp engine, my point you've ignored.

dhw: It did not “overexpand”,

Yes, it probably did, like every other past smaller brain which is the best guess about previous expansions.

dhw: and once again you have ignored my explanation of shrinkage. ...You simply have your God popping in to perform operations on existing brains, and you still haven’t told us why he would have “overexpanded” ours 300,000 years before we needed the capacity. (“Learning to use it” is meaningless since you tell us we didn’t use it until then.)

Describing the history of the response and eventual use of our brain explains nothing except it came as too big for currents needs in its beginning.


David’s theory of evolution

dhw: You keep agreeing that evolution branches off into countless unrelated segments, or are you saying that lizards, which have no connection with mammals, were “part of the goal of evolving humans”? Please stop restricting evolution to the one line from bacteria to humans.

DAVID: Of course massive new branches for food supply.

dhw: Yes, yes, extinct life forms and their food supplies that had no connection with humans and yet were apparently specially designed as part of the goal of evolving [= designing] humans. In your own words: “The current bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.”

A truism that doesn't support your chopping up the process of evolution in to sergments.


Symbiosis by bacteria

DAVID: God provided survival in all environments is my point.

dhw: That is not an answer. It’s MEANS of survival that are provided, and I’m asking this question because you insist that the quest for survival plays no part in evolution. Were the new flippers “provided” as a new means of survival or not? If they were, then it is clearly absurd to argue that the quest for survival plays no part in evolution.

That is pure unproven speculative Darwinism.


Immortal bacteria

DAVID: two major points. Some forms are designed to be able to live forever. The need to survive does not drive evolution. That 99% are gone is of no import. And here must be adequate food supply for life to thrive.

dhw: The need to survive did not drive immortal bacteria to change into something else because they are fine as they are! Now please tell us what purpose adaptations serve if not to improve organisms' chances of surviving in new conditions. And please remember you said that whales’ flippers did not advance evolution. And there had to be adequate food for EVERY life form that ever lived,

DAVID: My only point is God guaranteed survival.

dhw: You made three other points, I answered them all, and you have ignored my answers

Which talked all around survival as guaranteed by God.


Playing possum

DAVID: How did possums arrive at the conclusion that playing dead would fool predators, when generally running away fast is the reasonable alternative?

dhw: Because maybe one clever possum realized he could not outrun a predator, and hit on the brilliant idea of pretending to be dead. It worked. And when something works, it generally catches on.

Now you have possums watching each other and reaching conceptual conclusions.

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, March 09, 2021, 11:47 (1353 days ago) @ David Turell

DAVID: You still miss the point. The new sapiens brain is way over expanded for the needs of that time as then proven by much latter massive use. You are totally twisted backwards in your view, which is why I discarded the remainder of your thought.

dhw: Of course you discard the remainder of my thought, because you persist in ignoring the fact that the modern brain complexifies instead of expanding any further. This suggests that once it had expanded, the volume met all requirements.

DAVID: What requirements? They have to be the needs for that time period. However if we look at the difference between erectus and sapiens the current activities of daily living (a term used today about folks) the difference is slight. So a new model Volkswagen is not given a 650 hp engine, my point you've ignored.

I can't follow any of this! The current activities of daily living (prior to Covid) entail driving to work, flying across the world, using computers, switching on lights, watching TV, turning on the tap….How does this mean that there is only a slight difference between our current activities and those of erectus? And I don’t understand your VW image. Erectus had a brain capacity of 900-1200 cc. I propose that an unknown requirement (I gave you a list of theories in my last post) led to our expansion to 1350cc. The variation in erectus may also have been due to new requirements during his 2-million-year existence (e.g. new tools, new ideas – wasn’t erectus the first hunter-gatherer? - use of fire). Sapiens has only been around for approx. 315,000 years but once his brain had expanded (reason unknown, but plenty of different theories), there was a period – let’s say 300,000 years – in which nothing new happened. Then there was a burst of activity, but instead of the brain expanding (as erectus’s did), it complexified – presumably because further expansion would have required major anatomical changes. Your only objection to this theory seems to be that we didn’t need our 1350cc brain for 300,000 years, but you can’t tell us why your God would have given it to us when we didn’t need it.

dhw: It did not “overexpand”.

DAVID: Yes, it probably did, like every other past smaller brain which is the best guess about previous expansions.

What is your criterion for “overexpansion”? The smaller brain expanded when its capacity was no longer sufficient to cope with new demands! Then it proved adequate until the next set of new requirements, and so it expanded again, but in our case it complexified. Shrinkage (which does suggest overexpansion) came about because complexification proved so efficient that some cells were not needed any more. We’ve been over this time and again, and you have never provided one single argument against the logic of this theory.

David’s theory of evolution

dhw: […] Please stop restricting evolution to the one line from bacteria to humans.

DAVID: Of course massive new branches for food supply.

dhw: […] In your own words: “The current bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.”

DAVID: A truism that doesn't support your chopping up the process of evolution in to segments.

I do not “chop” evolution up into segments. I have it branching out into a vast bush, and 99% of the branches (including food supplies) did NOT lead to humans. And the obvious truth that past forms had no link to present forms should stop you once and for all from claiming that past forms were part of the goal to evolve present forms.

Symbiosis by bacteria

dhw: […] Were the new flippers “provided” as a new means of survival or not? If they were, then it is clearly absurd to argue that the quest for survival plays no part in evolution.

DAVID: That is pure unproven speculative Darwinism.

Please tell us what other purpose flippers serve if it is not to improve the chances of survival in a new environment. If innovations and adaptations serve to improve chances of survival, then it is clearly absurd to say that the quest for survival plays no part in evolution, regardless of your dislike of anything Darwin might have proposed. Same again under “immortal bacteria”, so we can drop that example.

Playing possum

DAVID: How did possums arrive at the conclusion that playing dead would fool predators, when generally running away fast is the reasonable alternative?

dhw: Because maybe one clever possum realized he could not outrun a predator, and hit on the brilliant idea of pretending to be dead. It worked. And when something works, it generally catches on.

DAVID: Now you have possums watching each other and reaching conceptual conclusions.

What exactly do you mean by “conceptual”? All life forms have developed strategies to improve their chances of survival. They must have originated at one time and been passed on. That doesn’t mean that flowers and insects and birds and fish and animals have at some time sat down to have a good think about what to do if….Once a strategy works, it is passed on to others in a group, or from generation to generation. What is your theory? 3.8 billion years ago, your God drew up a programme for the evolution of possums and their strategy of playing dead? Or do you think he popped in every time he felt like rescuing a possum?

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, March 09, 2021, 18:50 (1353 days ago) @ dhw

DAVID: What requirements? They have to be the needs for that time period. However if we look at the difference between erectus and sapiens the current activities of daily living (a term used today about folks) the difference is slight. So a new model Volkswagen is not given a 650 hp engine, my point you've ignored.

dhw: I can't follow any of this! The current activities of daily living

My apologies for garbling the meaning. I meant the changes in daily living for original sapiens was slight compared to erectus activities of that time period despite the new huge brain.

dhw: I propose that an unknown requirement (I gave you a list of theories in my last post) led to our expansion to 1350cc. The variation in erectus may also have been due to new requirements during his 2-million-year existence (e.g. new tools, new ideas – wasn’t erectus the first hunter-gatherer? - use of fire).

You make my case. Erectus led a simple life as did original sapiens. No need for big brain.

dhw: Your only objection to this theory seems to be that we didn’t need our 1350cc brain for 300,000 years, but you can’t tell us why your God would have given it to us when we didn’t need it.

Simple concept: God anticipates needs all through evolution. Flippers given to pre-whales so thet can swim easily.


dhw: It did not “overexpand”.

DAVID: Yes, it probably did, like every other past smaller brain which is the best guess about previous expansions.

dhw: What is your criterion for “overexpansion”? .. We’ve been over this time and again, and you have never provided one single argument against the logic of this theory.

Constant logical answer. Obviously too big for the needs of the time it appeared.

David’s theory of evolution


dhw: […] Please stop restricting evolution to the one line from bacteria to humans.

DAVID: A truism that doesn't support your chopping up the process of evolution in to segments.

dhw: I do not “chop” evolution up into segments. I have it branching out into a vast bush, and 99% of the branches (including food supplies) did NOT lead to humans. And the obvious truth that past forms had no link to present forms should stop you once and for all from claiming that past forms were part of the goal to evolve present forms.

Really? Didn't humans have to evolve from previous forms, which also had to evolve?


Symbiosis by bacteria

dhw: […] Were the new flippers “provided” as a new means of survival or not? If they were, then it is clearly absurd to argue that the quest for survival plays no part in evolution.

DAVID: That is pure unproven speculative Darwinism.

Please tell us what other purpose flippers serve if it is not to improve the chances of survival in a new environment.

My view is God provides for future survival as He designs new forma.

Playing possum

DAVID: How did possums arrive at the conclusion that playing dead would fool predators, when generally running away fast is the reasonable alternative?

dhw: Because maybe one clever possum realized he could not outrun a predator, and hit on the brilliant idea of pretending to be dead. It worked. And when something works, it generally catches on.

DAVID: Now you have possums watching each other and reaching conceptual conclusions.

dhw: What exactly do you mean by “conceptual”? All life forms have developed strategies to improve their chances of survival. They must have originated at one time and been passed on. That doesn’t mean that flowers and insects and birds and fish and animals have at some time sat down to have a good think about what to do if….Once a strategy works, it is passed on to others in a group, or from generation to generation.

So now you have a group of possums watching a successful escape by a single possum and adopting the method. Really?

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, March 10, 2021, 11:35 (1352 days ago) @ David Turell

dhw: I propose that an unknown requirement (I gave you a list of theories in my last post) led to our expansion to 1350cc. The variation in erectus may also have been due to new requirements during his 2-million-year existence (e.g. new tools, new ideas – wasn’t erectus the first hunter-gatherer? - use of fire)…

DAVID: You make my case. Erectus led a simple life as did original sapiens. No need for big brain.

Erectus’s brain varied from 900cc to 1200cc – a range of 300 cc. Sapiens’ brain averages 1350 cc., an increase of 150 cc. I propose that all these increases would have been caused by new tools, ideas, discoveries etc. that required additional cells. Why do you think the invention of, for instance, a new tool or weapon would revolutionize the “simple” way of life? They needed the bigger brain to implement new ideas as an improvement to their still ”simple” way of life. A hunter with a new weapon is still a hunter.

dhw: Your only objection to this theory seems to be that we didn’t need our 1350cc brain for 300,000 years, but you can’t tell us why your God would have given it to us when we didn’t need it.

DAVID: Simple concept: God anticipates needs all through evolution. Flippers given to pre-whales so thet can swim easily.

So do you think whales could have waited around for 300,000 years before they entered the water? That’s the argument you are using for the sapiens brain! Why did he give it to sapiens 300,000 years before they needed it? How about this for an amazing idea: both the sapiens brain expansion and the whale’s flipper constituted structural changes in response to new requirements – sapiens to implement a new idea, whale to improve its chances of survival in a new environment? Too logical for you?

Early Asia spread

QUOTE: ….while the tools at Attirampakkam may resemble Middle Paleolithic tools found elsewhere, that doesn’t necessarily exclude the possibility that different peoples converged on similar solutions to common problems.

DAVID: Early homos either had massive wanderlust or environmental problems that drove them. Like convergence why could there not have been different populations with the same new concepts?

Agreed. All these widespread, larger brained sapiens and their tools suggest to me that we are getting closer and closer to the point at which we can say it is feasible that more sophisticated tool-making was the activity that first enlarged the pre-sapiens brain.

dhw: It did not “overexpand”.

DAVID: Yes, it probably did, like every other past smaller brain which is the best guess about previous expansions.

dhw: What is your criterion for “overexpansion”? [...]

DAVID: Constant logical answer. Obviously too big for the needs of the time it appeared.

Obviously proved adequate once it had appeared. But from then on, in the case of sapiens, when there was a new requirement, complexification took over from expansion.

David’s theory of evolution

dhw: […] Please stop restricting evolution to the one line from bacteria to humans.

DAVID: A truism that doesn't support your chopping up the process of evolution in to segments.

dhw: I do not “chop” evolution up into segments. I have it branching out into a vast bush, and 99% of the branches (including food supplies) did NOT lead to humans. And the obvious truth that past forms had no link to present forms should stop you once and for all from claiming that past forms were part of the goal to evolve present forms.

DAVID: Really? Didn't humans have to evolve from previous forms, which also had to evolve?

Yes, that’s the 1% we’re talking about. I asked you to stop restricting evolution to the one line from bacteria to humans (now bolded). And so you proceed to restrict evolution to the one line from bacteria to humans.

SURVIVAL

dhw: […] Were the new flippers “provided” as a new means of survival or not? If they were, then it is clearly absurd to argue that the quest for survival plays no part in evolution.

DAVID: That is pure unproven speculative Darwinism.

dhw: Please tell us what other purpose flippers serve if it is not to improve the chances of survival in a new environment.

DAVID: My view is God provides for future survival as He designs new forma.

If the purpose is future survival, it is clearly absurd to argue that the quest for survival plays no part in evolution. You simply have your God inventing means of survival in advance instead of organisms doing it themselves when needed. The purpose is still survival.

Playing possum

DAVID: So now you have a group of possums watching a successful escape by a single possum and adopting the method. Really?

How do you think strategies originate and then survive? They have to start somewhere, and then they have to be passed on by example, communication, education (perhaps you didn’t know that parent animals teach their young) etc. Or do you think your God preprogrammed the first cells 3.8 billion years ago to pass on a design for possums plus their play-dead strategy, or does he keep popping in to give possums refresher courses?

Evolution: more genomic evidence of pre-planning

by David Turell @, Wednesday, March 10, 2021, 15:00 (1352 days ago) @ dhw

DAVID: You make my case. Erectus led a simple life as did original sapiens. No need for big brain.

dhw: Erectus’s brain varied from 900cc to 1200cc – a range of 300 cc. Sapiens’ brain averages 1350 cc., an increase of 150 cc. I propose that all these increases would have been caused by new tools, ideas, discoveries etc. that required additional cells. Why do you think the invention of, for instance, a new tool or weapon would revolutionize the “simple” way of life? They needed the bigger brain to implement new ideas as an improvement to their still ”simple” way of life. A hunter with a new weapon is still a hunter.

You have not described any major change in lifestyle between erectus and sapiens that would require sure a large brain expansion, compared to the way it is massively used today. God anticipated that use.


dhw: Your only objection to this theory seems to be that we didn’t need our 1350cc brain for 300,000 years, but you can’t tell us why your God would have given it to us when we didn’t need it.

DAVID: Simple concept: God anticipates needs all through evolution. Flippers given to pre-whales so thet can swim easily.

dhw: So do you think whales could have waited around for 300,000 years before they entered the water? That’s the argument you are using for the sapiens brain!

Terrible comparison. a flipper has one use, a large brain very many.


David’s theory of evolution

dhw: I do not “chop” evolution up into segments. I have it branching out into a vast bush, and 99% of the branches (including food supplies) did NOT lead to humans. And the obvious truth that past forms had no link to present forms should stop you once and for all from claiming that past forms were part of the goal to evolve present forms.

DAVID: Really? Didn't humans have to evolve from previous forms, which also had to evolve?

dhw: Yes, that’s the 1% we’re talking about. I asked you to stop restricting evolution to the one line from bacteria to humans (now bolded). And so you proceed to restrict evolution to the one line from bacteria to humans.

Not so. Everything came from bacteria. I just selected us as an example.


SURVIVAL

dhw: Please tell us what other purpose flippers serve if it is not to improve the chances of survival in a new environment.

DAVID: My view is God provides for future survival as He designs new forma.

dhw: If the purpose is future survival, it is clearly absurd to argue that the quest for survival plays no part in evolution. You simply have your God inventing means of survival in advance instead of organisms doing it themselves when needed. The purpose is still survival.

God's purpose was to produce humans.


Playing possum

DAVID: So now you have a group of possums watching a successful escape by a single possum and adopting the method. Really?

dhw: How do you think strategies originate and then survive? They have to start somewhere, and then they have to be passed on by example, communication, education (perhaps you didn’t know that parent animals teach their young) etc. Or do you think your God preprogrammed the first cells 3.8 billion years ago to pass on a design for possums plus their play-dead strategy, or does he keep popping in to give possums refresher courses?

God had to tach them somehow.

Evolution: more genomic evidence of pre-planning

by dhw, Thursday, March 11, 2021, 09:20 (1352 days ago) @ David Turell

DAVID: You make my case. Erectus led a simple life as did original sapiens. No need for big brain.

dhw: Erectus’s brain varied from 900cc to 1200cc – a range of 300 cc. Sapiens’ brain averages 1350 cc., an increase of 150 cc. I propose that all these increases would have been caused by new tools, ideas, discoveries etc. that required additional cells. Why do you think the invention of, for instance, a new tool or weapon would revolutionize the “simple” way of life? They needed the bigger brain to implement new ideas as an improvement to their still ”simple” way of life. A hunter with a new weapon is still a hunter.

DAVID: You have not described any major change in lifestyle between erectus and sapiens that would require sure a large brain expansion, compared to the way it is massively used today. God anticipated that use.

I have just said that there is no reason why the erectus and sapiens expansions should have changed the lifestyle: the hunter would still be a hunter. The massive use today of the existing brain has resulted in complexification, not expansion – presumably because the brain could not expand any more without major changes to the anatomy. And according to you, complexification is an autonomous process (no divine interference), so why shouldn’t he have made expansion an autonomous process too: cells add to their number or complexify as and when they need to – not before they need to?

dhw: Your only objection to this theory seems to be that we didn’t need our 1350cc brain for 300,000 years, but you can’t tell us why your God would have given it to us when we didn’t need it.

DAVID: Simple concept: God anticipates needs all through evolution. Flippers given to pre-whales so they can swim easily.

dhw: So do you think whales could have waited around for 300,000 years before they entered the water? That’s the argument you are using for the sapiens brain!

DAVID: Terrible comparison. a flipper has one use, a large brain very many.

You have completely missed the point. I am proposing that even if it were true that your God popped in to change legs to flippers, you would not have expected him to do so 300,000 years before the whale entered the water. So why would he pop in to expand the brain 300,000 years before the extra capacity was needed?

David’s theory of evolution

dhw: I do not “chop” evolution up into segments. I have it branching out into a vast bush, and 99% of the branches (including food supplies) did NOT lead to humans. And the obvious truth that past forms had no link to present forms should stop you once and for all from claiming that past forms were part of the goal to evolve present forms.

DAVID: Really? Didn't humans have to evolve from previous forms, which also had to evolve?

dhw: Yes, that’s the 1% we’re talking about. I asked you to stop restricting evolution to the one line from bacteria to humans (now bolded). And so you proceed to restrict evolution to the one line from bacteria to humans.

DAVID: Not so. Everything came from bacteria. I just selected us as an example.

I am not disputing evolution! You keep telling us that every other life form was “part of the goal of evolving humans”, although 99% of them had no connection with humans!

SURVIVAL

dhw: Please tell us what other purpose flippers serve if it is not to improve the chances of survival in a new environment.

DAVID: My view is God provides for future survival as He designs new forma.

dhw: If the purpose is future survival, it is clearly absurd to argue that the quest for survival plays no part in evolution. You simply have your God inventing means of survival in advance instead of organisms doing it themselves when needed. The purpose is still survival.

DAVID: God's purpose was to produce humans.

There you go again. God turned legs into flippers, and designed millions of life forms and their food supplies, lifestyles, strategies and natural wonders because he wanted to design humans, although 99% of them had no connection with humans. And adaptation to new conditions has nothing to do with the quest for survival. Please let’s put an end to this discussion. It is becoming more and more nonsensical. :-(

Playing possum

dhw: How do you think strategies originate and then survive? They have to start somewhere, and then they have to be passed on by example, communication, education (perhaps you didn’t know that parent animals teach their young) etc. Or do you think your God preprogrammed the first cells 3.8 billion years ago to pass on a design for possums plus their play-dead strategy, or does he keep popping in to give possums refresher courses?

DAVID: God had to teach them somehow.

You have only offered us these two methods, and I wonder how many even of your ID-ers, let alone the folk who have studied animal behaviour, would support the idea that animals, birds, insects etc. are incapable of making their own discoveries or designing their own survival strategies.

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, March 11, 2021, 15:22 (1351 days ago) @ dhw

DAVID: You have not described any major change in lifestyle between erectus and sapiens that would require sure a large brain expansion, compared to the way it is massively used today. God anticipated that use.

dhw: I have just said that there is no reason why the erectus and sapiens expansions should have changed the lifestyle: the hunter would still be a hunter. The massive use today of the existing brain has resulted in complexification, not expansion – presumably because the brain could not expand any more without major changes to the anatomy. And according to you, complexification is an autonomous process (no divine interference), so why shouldn’t he have made expansion an autonomous process too: cells add to their number or complexify as and when they need to – not before they need to?

Your only weak response is God let the neurons do it. It doesn't answer the question of why such a large jump in size while lifestyle requirements changes were minimal as you admit.

DAVID: Terrible comparison. a flipper has one use, a large brain very many.


dhw: You have completely missed the point. I am proposing that even if it were true that your God popped in to change legs to flippers, you would not have expected him to do so 300,000 years before the whale entered the water. So why would he pop in to expand the brain 300,000 years before the extra capacity was needed?

You have asked me the question I've posed to you. My answer is in logical anticipation of future use.


David’s theory of evolution

dhw: I am not disputing evolution! You keep telling us that every other life form was “part of the goal of evolving humans”, although 99% of them had no connection with humans!

Your same chopping up of evolution into segments. All branches evolved from bacteria. That is the original connection


SURVIVAL

dhw: If the purpose is future survival, it is clearly absurd to argue that the quest for survival plays no part in evolution. You simply have your God inventing means of survival in advance instead of organisms doing it themselves when needed. The purpose is still survival.

DAVID: God's purpose was to produce humans.

dhw: There you go again. God turned legs into flippers, and designed millions of life forms and their food supplies, lifestyles, strategies and natural wonders because he wanted to design humans, although 99% of them had no connection with humans. And adaptation to new conditions has nothing to do with the quest for survival. Please let’s put an end to this discussion. It is becoming more and more nonsensical. :-(

I start up only because you constantly reference your illogical objections


Playing possum

dhw: How do you think strategies originate and then survive? They have to start somewhere, and then they have to be passed on by example, communication, education (perhaps you didn’t know that parent animals teach their young) etc. Or do you think your God preprogrammed the first cells 3.8 billion years ago to pass on a design for possums plus their play-dead strategy, or does he keep popping in to give possums refresher courses?

DAVID: God had to teach them somehow.

dhw: You have only offered us these two methods, and I wonder how many even of your ID-ers, let alone the folk who have studied animal behaviour, would support the idea that animals, birds, insects etc. are incapable of making their own discoveries or designing their own survival strategies.

Back to the weaverbird nests. Even boy scouts would have trouble with some of the complex knots.

Evolution: more genomic evidence of pre-planning

by dhw, Friday, March 12, 2021, 07:40 (1351 days ago) @ David Turell

DAVID: You have not described any major change in lifestyle between erectus and sapiens that would require sure a large brain expansion, compared to the way it is massively used today. God anticipated that use.

dhw: I have just said that there is no reason why the erectus and sapiens expansions should have changed the lifestyle: the hunter would still be a hunter. The massive use today of the existing brain has resulted in complexification, not expansion – presumably because the brain could not expand any more without major changes to the anatomy. And according to you, complexification is an autonomous process (no divine interference), so why shouldn’t he have made expansion an autonomous process too: cells add to their number or complexify as and when they need to – not before they need to?

DAVID: Your only weak response is God let the neurons do it. It doesn't answer the question of why such a large jump in size while lifestyle requirements changes were minimal as you admit.

According to you, your God lets the neurons complexify, so why not also let them multiply? Why is that weak? I keep repeating that NOBODY knows what caused ANY of the jumps in ANY of the hominin and homo brains. That is why we have different theories. And I keep repeating that whatever the cause (new tools, new weapons, new ideas, new environments, new discoveries), it did not have to change the lifestyles, which would still have been based almost exclusively on survival. You keep ignoring my example: a hunter with a new weapon will still be a hunter.

dhw: I am proposing that even if it were true that your God popped in to change legs to flippers, you would not have expected him to do so 300,000 years before the whale entered the water. So why would he pop in to expand the brain 300,000 years before the extra capacity was needed?

DAVID: You have asked me the question I've posed to you. My answer is in logical anticipation of future use.

Why have you inserted the word “logical”? What is logical about your God creating a large brain that is not going to be used for 300,000 years? My logical answer: the brain enlarged IN RESPONSE to a new requirement, and then remained the same until there was another new requirement which also needed greater capacity.

David’s theory of evolution

dhw: I am not disputing evolution! You keep telling us that every other life form was “part of the goal of evolving humans”, although 99% of them had no connection with humans!

DAVID: Your same chopping up of evolution into segments. All branches evolved from bacteria. That is the original connection.

There is no chopping. All branches evolved from bacteria, but branches branched out into more and more branches, and humans are not directly descended from 99% of those branches. That is what makes nonsense of your claim that ALL life forms were “part of the goal of evolving [=designing] humans”. Or will you now tell us how, for instance, the lizard/dinosaur branch formed part of the goal of designing humans?

SURVIVAL

dhw: If the purpose is future survival, it is clearly absurd to argue that the quest for survival plays no part in evolution. [..]

DAVID: God's purpose was to produce humans.

dhw: There you go again. God turned legs into flippers, and designed millions of life forms and their food supplies, lifestyles, strategies and natural wonders because he wanted to design humans, although 99% of them had no connection with humans. And adaptation to new conditions has nothing to do with the quest for survival. Please let’s put an end to this discussion. It is becoming more and more nonsensical. :-(

DAVID: I start up only because you constantly reference your illogical objections.

My objections are to the logic of your theories: 1) that your God had only one goal (humans) but designed millions of extinct life forms as part of his goal, although 99% of them had no connection with humans. This is illogical. 2) Organs which are designed to improve an organism’s chances of survival are evidence that the quest for survival plays no part in evolution. This is illogical.

Playing possum

dhw: How do you think strategies originate and then survive? They have to start somewhere, and then they have to be passed on by example, communication, education (perhaps you didn’t know that parent animals teach their young) etc. Or do you think your God preprogrammed the first cells 3.8 billion years ago to pass on a design for possums plus their play-dead strategy, or does he keep popping in to give possums refresher courses?

DAVID: God had to teach them somehow.

dhw: You have only offered us these two methods, and I wonder how many even of your ID-ers, let alone the folk who have studied animal behaviour, would support the idea that animals, birds, insects etc. are incapable of making their own discoveries or designing their own survival strategies.

DAVID: Back to the weaverbird nests. Even boy scouts would have trouble with some of the complex knots.

So 3.8 billion years ago, your God preprogrammed the arrival of possums and their play-dead strategy, and he preprogrammed weaverbirds and their ability to tie complicated knots? Or did he pop in to give courses to possums and weaverbirds, all as part of his goal to design humans? Any alternatives?

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, March 12, 2021, 18:20 (1350 days ago) @ dhw

DAVID: Your only weak response is God let the neurons do it. It doesn't answer the question of why such a large jump in size while lifestyle requirements changes were minimal as you admit.


dhw: According to you, your God lets the neurons complexify, so why not also let them multiply? Why is that weak? ... You keep ignoring my example: a hunter with a new weapon will still be a hunter.

Inventing a spear is a tiny use of the sapiens brain as evidenced by today. The neurons have a God-given program to follow to complexify networks


DAVID: You have asked me the question I've posed to you. My answer is in logical anticipation of future use.

dhw: Why have you inserted the word “logical”? What is logical about your God creating a large brain that is not going to be used for 300,000 years? My logical answer: the brain enlarged IN RESPONSE to a new requirement, and then remained the same until there was another new requirement which also needed greater capacity.

All you point out is tiny requirements the obviously don't require the neew size. And you are wrong, the brain neve enlarged again after 300,000 years


David’s theory of evolution

DAVID: Your same chopping up of evolution into segments. All branches evolved from bacteria. That is the original connection.

dhw: There is no chopping. All branches evolved from bacteria, but branches branched out into more and more branches, and humans are not directly descended from 99% of those branches. That is what makes nonsense of your claim that ALL life forms were “part of the goal of evolving [=designing] humans”. Or will you now tell us how, for instance, the lizard/dinosaur branch formed part of the goal of designing humans?

The huge bush supplies food for all, eve nteh l izzard branch.


SURVIVAL

DAVID: I start up only because you constantly reference your illogical objections.

dhw; My objections are to the logic of your theories: 1) that your God had only one goal (humans) but designed millions of extinct life forms as part of his goal, although 99% of them had no connection with humans. This is illogical. 2) Organs which are designed to improve an organism’s chances of survival are evidence that the quest for survival plays no part in evolution. This is illogical.

My obvious previous point: God designs to guarantee survival. God drives evolution, not nature


Playing possum


DAVID: Back to the weaverbird nests. Even boy scouts would have trouble with some of the complex knots.

dhw: So 3.8 billion years ago, your God preprogrammed the arrival of possums and their play-dead strategy, and he preprogrammed weaverbirds and their ability to tie complicated knots? Or did he pop in to give courses to possums and weaverbirds, all as part of his goal to design humans? Any alternatives?

God designs to guarantee survival. God drives evolution, not nature, as above

Evolution: how do new proteins develop for use

by David Turell @, Friday, March 12, 2021, 23:04 (1350 days ago) @ David Turell

Proteins in life are large and complex in form in order to deliver the proper necessary fuctions:

https://phys.org/news/2021-03-proteins.html

"That completely new proteins—and, with them, new properties—can emerge practically out of nothing, was inconceivable for decades, in line with what the Greek philosopher Parmenides said: "Nothing can emerge from nothing" (ex nihilo nihil fit). Working with colleagues from the U.S. and Australia, researchers from the University of Münster (Germany) have now reconstructed how evolution forms the structure and function of a newly emerged protein in flies.

***

"It had been assumed up to now that new proteins emerge from already existing proteins—by a duplication of the underlying genes and by a series of small mutations in one or both gene copies. In the past ten years, however, a new understanding of protein evolution has come about: proteins can also develop from so-called non-coding DNA (deoxyribonucleic acid)—in other words, from that part of the genetic material which does not normally produce proteins—and can subsequently develop into functional cell components. This is surprising for several reasons: for many years, it had been assumed that, in order to be functional, proteins had to take on a highly developed geometrical form (a 3D structure). It had further been assumed that such a form could not develop from a gene emerging at random, but would require a complex combination of amino-acids enabling this protein to exist in its functional form.

"Despite decades of trying, researchers worldwide have not yet succeeded in constructing proteins with the desired 3D structures and functions, which means that the "code" for the formation of a functioning protein is essentially unknown...Despite decades of trying, researchers worldwide have not yet succeeded in constructing proteins with the desired 3D structures and functions, which means that the "code" for the formation of a functioning protein is essentially unknown... proteins are constantly being formed de novo (anew)—i.e. without any related precursor protein going through a selection process.

"The vast majority of these de novo proteins are useless, or even slightly deleterious, as they can interfere with existing proteins in the cell. Such new proteins are quickly lost again after several generations, as organisms carrying the new gene encoding the protein have impaired survival or reproduction. However, a select few de novo proteins prove to have beneficial functions. These proteins integrate into the molecular components of cells and eventually, after millions of years of minor modifications, become indispensable.

***

"The results match up with several other current studies, which have shown that the genomic elements from which protein-coding genes emerge are activated frequently—tens of thousands of times in each individual. These fragments are then sorted through the process of evolutionary selection. The ones which are useless or harmful—the vast majority—are quickly discarded. But those which are neutral, or are slightly beneficial, can be optimized over millions of years and changed into something useful."

Comment: Fascinating, because it is a Darwinian attempt to explain how useful proteins appear by chance. They assume it takes many chance attempts over millions of years. They used computer simulations based on Darwin theories. What it doesn't explain is how the requirement for two simultaneously necessary proteins would appear together. I'm still with God as the designer

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, March 13, 2021, 12:56 (1349 days ago) @ David Turell

DAVID: Your only weak response is God let the neurons do it. It doesn't answer the question of why such a large jump in size while lifestyle requirements changes were minimal as you admit.

dhw: According to you, your God lets the neurons complexify, so why not also let them multiply? Why is that weak? ... You keep ignoring my example: a hunter with a new weapon will still be a hunter.

DAVID: Inventing a spear is a tiny use of the sapiens brain as evidenced by today. The neurons have a God-given program to follow to complexify networks.

Your point was that there was no change in lifestyle, and I have explained why, so you now you switch the subject. Sapiens did not invent the spear, which in its day would have been a major development. Improvements in artefacts are solid evidence of progress, and they accompany expansion of brains. Why are you downgrading them? Your proposal is that your God stepped in to enlarge the early brain so that the new generation of homos could invent the spear (or whatever the invention was). I say it was the implementation of the new idea that caused the brain to expand. I don’t understand your final sentence. If new requirements such as reading complexify the brain, what programme are the neurons following? My theistic proposal is that your God invented the mechanism which enables cells to complexify in response to new demands. In previous posts I seem to remember you agreeing that complexification was an autonomous process. Are you now saying your God preprogrammed the neurons specifically to respond to the task of reading?

DAVID (re God’s reason for a 300,000-year gap): You have asked me the question I've posed to you. My answer is in logical anticipation of future use.

dhw: Why have you inserted the word “logical”? What is logical about your God creating a large brain that is not going to be used for 300,000 years? My logical answer: the brain enlarged IN RESPONSE to a new requirement, and then remained the same until there was another new requirement which also needed greater capacity.

DAVID: All you point out is tiny requirements the obviously don't require the neew size. And you are wrong, the brain neve enlarged again after 300,000 years.

My apologies – I inadvertently switched from the sapiens brain to ALL previous brains. Please substitute “another new requirement which now needed complexification, as the brain had reached its maximum size.” In previous homos, new requirements such as new tools, weapons, ideas, environments, discoveries, required greater capacity. You have never called them tiny before. Your argument was always that your God preprogrammed or dabbled the enlargements IN ADVANCE of homos producing whatever was new.

David’s theory of evolution

DAVID: Your same chopping up of evolution into segments. All branches evolved from bacteria. That is the original connection.

dhw: There is no chopping. All branches evolved from bacteria, but branches branched out into more and more branches, and humans are not directly descended from 99% of those branches. That is what makes nonsense of your claim that ALL life forms were “part of the goal of evolving [=designing] humans”. Or will you now tell us how, for instance, the lizard/dinosaur branch formed part of the goal of designing humans?

DAVID: The huge bush supplies food for all, even the lizard branch.

We do not eat dinosaurs! Why do you keep ignoring your own clear statements? “The current bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms” “Extinct life has no role in current time.”

SURVIVAL

DAVID: I start up only because you constantly reference your illogical objections.

dhw: My objections are to the logic of your theories: 1) that your God had only one goal (humans) but designed millions of extinct life forms as part of his goal, although 99% of them had no connection with humans. This is illogical. 2) Organs which are designed to improve an organism’s chances of survival are evidence that the quest for survival plays no part in evolution. This is illogical.

DAVID: My obvious previous point: God designs to guarantee survival. God drives evolution, not nature. [You repeat this in your explanation of the possum’s strategy of playing dead and the weaverbird tying knots.]

Why have you brought Nature into the discussion? You have told us that your God “provides for future survival as He designs new forms.” Taking flippers as our example, this can only mean that he designed flippers in order to guarantee the survival of the organism that got the flippers. So how can you possibly argue that survival plays no part in evolution? Your God’s reason for designing the flippers was to enable the whale to survive!

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, March 13, 2021, 15:32 (1349 days ago) @ dhw

DAVID: Inventing a spear is a tiny use of the sapiens brain as evidenced by today. The neurons have a God-given program to follow to complexify networks.

Your point was that there was no change in lifestyle, and I have explained ... I don’t understand your final sentence. If new requirements such as reading complexify the brain, what programme are the neurons following? My theistic proposal is that your God invented the mechanism which enables cells to complexify in response to new demands. In previous posts I seem to remember you agreeing that complexification was an autonomous process. Are you now saying your God preprogrammed the neurons specifically to respond to the task of reading?

Yes, God programmed our neurons to complexify in our big brain as necessary to handle new uses. And I think past brains had the same program. I used the spear as a simple example, not historically.


DAVID: All you point out is tiny requirements the obviously don't require the new size. And you are wrong, the brain never enlarged again after 300,000 years.

dhw: My apologies – I inadvertently switched from the sapiens brain to ALL previous brains. Please substitute “another new requirement which now needed complexification, as the brain had reached its maximum size.” In previous homos, new requirements such as new tools, weapons, ideas, environments, discoveries, required greater capacity. You have never called them tiny before. Your argument was always that your God preprogrammed or dabbled the enlargements IN ADVANCE of homos producing whatever was new.

Obvious: inventing a spear is not a major mental achievement like General Relativity.


David’s theory of evolution

DAVID: The huge bush supplies food for all, even the lizard branch.

dhw: We do not eat dinosaurs! Why do you keep ignoring your own clear statements? “The current bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms” “Extinct life has no role in current time.”

I know that as well as you do. The point you constantly denigrate is the continuity of evolution from bacteria to now in common descent.


SURVIVAL

DAVID: My obvious previous point: God designs to guarantee survival. God drives evolution, not nature. [You repeat this in your explanation of the possum’s strategy of playing dead and the weaverbird tying knots.]

dhw: Why have you brought Nature into the discussion? You have told us that your God “provides for future survival as He designs new forms.” Taking flippers as our example, this can only mean that he designed flippers in order to guarantee the survival of the organism that got the flippers. So how can you possibly argue that survival plays no part in evolution? Your God’s reason for designing the flippers was to enable the whale to survive!

I'm saying Darwin's theory that the drive for survival drives evolution is false. God designs the proper advances to guarantee survival. Quite a difference from your attempts to explain changes like flippers.

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, March 14, 2021, 11:53 (1348 days ago) @ David Turell

DAVID: [..] The neurons have a God-given program to follow to complexify networks.

dhw: If new requirements such as reading complexify the brain, what programme are the neurons following? […] In previous posts I seem to remember you agreeing that complexification was an autonomous process. Are you now saying your God preprogrammed the neurons specifically to respond to the task of reading?

DAVID: Yes, God programmed our neurons to complexify in our big brain as necessary to handle new uses. And I think past brains had the same program. [..]

That is NOT specifically in response to the task of reading! You are now repeating my theistic version of my theory: your God created the mechanism whereby cells complexify to “handle new uses”: for example, in a process of cause and effect, the brain complexifies as the illiterate person learns to read (NOT in anticipation of the learning). I agree that past brains would have had the same programme for AUTONOMOUS complexification. And so why could your God not have designed the same mechanism to enable cells to expand as well as complexify through the autonomous process of “handling new uses”?

dhw: In previous homos, new requirements such as new tools, weapons, ideas, environments, discoveries, required greater capacity. You have never called them tiny before. Your argument was always that your God preprogrammed or dabbled the enlargements IN ADVANCE of homos producing whatever was new.

DAVID: Obvious: inventing a spear is not a major mental achievement like General Relativity.

No one would dispute that modern human brain power has advanced immeasurably from that of our ancestors! How does that prove that the invention of what was then a revolutionary advance in technology did not require an expansion of brain capacity? If today you saw a chimp manufacturing a spear, you’d be flabbergasted. In its time, the spear was an amazing achievement.

David’s theory of evolution

DAVID: The huge bush supplies food for all, even the lizard branch.

dhw: We do not eat dinosaurs! Why do you keep ignoring your own clear statements? “The current bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms” “Extinct life has no role in current time.

DAVID: I know that as well as you do. The point you constantly denigrate is the continuity of evolution from bacteria to now in common descent.

Of course I don’t denigrate common descent! What I denigrate is the argument that every single branch of life’s history was “part of the goal of evolving (= designing) humans”, although 99% of the life forms and their food supplies had NO CONNECTION with humans. You keep trying to edit your own theory to leave this out. Please stop it.

SURVIVAL

dhw: […] Your God’s reason for designing the flippers was to enable the whale to survive!

DAVID:I'm saying Darwin's theory that the drive for survival drives evolution is false. God designs the proper advances to guarantee survival. Quite a difference from your attempts to explain changes like flippers.

Even if your God did design the flipper, the purpose is the driving force behind any action, and if the purpose was survival, then it is illogical to say that survival of the whale was not the driving force behind your God’s evolutionary action. Why else would he have designed the flipper? Please answer.

Evolution: more genomic evidence of pre-planning

by David Turell @, Sunday, March 14, 2021, 14:46 (1348 days ago) @ dhw

DAVID: Yes, God programmed our neurons to complexify in our big brain as necessary to handle new uses. And I think past brains had the same program. [..]

dhw" That is NOT specifically in response to the task of reading! You are now repeating my theistic version of my theory: ... I agree that past brains would have had the same programme for AUTONOMOUS complexification. And so why could your God not have designed the same mechanism to enable cells to expand as well as complexify through the autonomous process of “handling new uses”?

You are backwards. In our brain almost all neurons are present from the beginning. Complexification involves increasing axon networking, not neurons. Only the hippocampus adds neurons.


dhw: In previous homos, new requirements such as new tools, weapons, ideas, environments, discoveries, required greater capacity. You have never called them tiny before. Your argument was always that your God preprogrammed or dabbled the enlargements IN ADVANCE of homos producing whatever was new.

DAVID: Obvious: inventing a spear is not a major mental achievement like General Relativity.

dhw: No one would dispute that modern human brain power has advanced immeasurably from that of our ancestors! How does that prove that the invention of what was then a revolutionary advance in technology did not require an expansion of brain capacity? If today you saw a chimp manufacturing a spear, you’d be flabbergasted. In its time, the spear was an amazing achievement.

Of course a new weapon at a time of few useful weapons would 'look' big. To do it our new huge brain was barely used, the point you dance around: why so big if hardly used to full capacity.


David’s theory of evolution

DAVID: I know that as well as you do. The point you constantly denigrate is the continuity of evolution from bacteria to now in common descent.

Of course I don’t denigrate common descent! What I denigrate is the argument that every single branch of life’s history was “part of the goal of evolving (= designing) humans”, although 99% of the life forms and their food supplies had NO CONNECTION with humans. You keep trying to edit your own theory to leave this out. Please stop it.

Stop chopping up evolution. Common descent means all are connected in its continuity.
God chose to evolve us from bacteria.


SURVIVAL

dhw: […] Your God’s reason for designing the flippers was to enable the whale to survive!

DAVID:I'm saying Darwin's theory that the drive for survival drives evolution is false. God designs the proper advances to guarantee survival. Quite a difference from your attempts to explain changes like flippers.

dhw: Even if your God did design the flipper, the purpose is the driving force behind any action, and if the purpose was survival, then it is illogical to say that survival of the whale was not the driving force behind your God’s evolutionary action. Why else would he have designed the flipper? Please answer.

My point is God guarantees survival by preparing all new organisms/species with a proper design of parts to fit whatever new environmental challenges the new organism will meet. Simply God is the driving force for evolution and survival is obviously a necessary part

Evolution: more genomic evidence of pre-planning

by dhw, Monday, March 15, 2021, 11:34 (1347 days ago) @ David Turell

DAVID: Yes, God programmed our neurons to complexify in our big brain as necessary to handle new uses. And I think past brains had the same program. [..]

dhw: I agree thatpast brains would have had the same programme for AUTONOMOUS complexification. And so why could your God not have designed the same mechanism to enable cells to expand as well as complexify through the autonomous process of “handling new uses”?

DAVID: You are backwards. In our brain almost all neurons are present from the beginning. Complexification involves increasing axon networking, not neurons. Only the hippocampus adds neurons.

You have misread my post. PAST brains would have had the same mechanism for autonomous complexification, and so I am proposing that the same mechanism would have been used to expand PAST brains when their capacity for complexification could not meet PAST requirements. Hence the following:

dhw: In previous homos, new requirements such as new tools, weapons, ideas, environments, discoveries, required greater capacity. You have never called them tiny before. Your argument was always that your God preprogrammed or dabbled the enlargements IN ADVANCE of homos producing whatever was new.

DAVID: Obvious: inventing a spear is not a major mental achievement like General Relativity.

dhw: No one would dispute that modern human brain power has advanced immeasurably from that of our ancestors! How does that prove that the invention of what was then a revolutionary advance in technology did not require an expansion of brain capacity? If today you saw a chimp manufacturing a spear, you’d be flabbergasted. In its time, the spear was an amazing achievement.

DAVID: Of course a new weapon at a time of few useful weapons would 'look' big. To do it our new huge brain was barely used, the point you dance around: why so big if hardly used to full capacity.

It wasn’t our new huge brain that invented the spear! You are completely missing the point. Nobody knows what caused earlier expansions or the sapiens expansion. We have used the spear as a simple example. If heidelbergensis invented it, it was a huge step forward in technology, and perhaps that was the cause of his expanded brain. If not the spear, then go back to every artefact that has ever been found: artefacts are the only solid evidence of progress accompanying earlier expansions, but above I have given you a list of other possible causes. As for our huge new brain being barely used after the initial expansion, I have explained it umpteen times: once the new requirement had been met, there were no new requirements for 300,000 years, and when new ideas did occur, instead of the brain expanding, it complexified (perhaps because it had reached its maximum size). It is you who “dance” round the problem, because you cannot tell us why your God would have expanded the brain if it was not going to be required for another 300,000 years. Your only theory is that we had to learn to use it, although how you can learn to use something and yet produce nothing is beyond my understanding.

David’s theory of evolution

DAVID: The point you constantly denigrate is the continuity of evolution from bacteria to now in common descent.

dhw: Of course I don’t denigrate common descent! What I denigrate is the argument that every single branch of life’s history was “part of the goal of evolving (= designing) humans”, although 99% of the life forms and their food supplies had NO CONNECTION with humans. You keep trying to edit your own theory to leave this out. Please stop it.

DAVID: Stop chopping up evolution. Common descent means all are connected in its continuity. God chose to evolve us from bacteria.

I am not chopping up evolution. It branched out, and 99% of its branches had no connection with humans. THAT is why it is absurd to argue that ALL life forms were “part of the goal of evolving [designing] humans”.

SURVIVAL

dhw: Even if your God did design the flipper, the purpose is the driving force behind any action, and if the purpose was survival, then it is illogical to say that survival of the whale was not the driving force behind your God’s evolutionary action. Why else would he have designed the flipper? Please answer.

DAVID: My point is God guarantees survival by preparing all new organisms/species with a proper design of parts to fit whatever new environmental challenges the new organism will meet. Simply God is the driving force for evolution and survival is obviously a necessary part.

No problem, then. In your theory, God is the driving force who designs all the innovations, and the purpose of the innovations is to improve organisms’ chances of survival in changing environments. And so when you wrote “survival never drives evolution”, you only meant that God designs all the innovations, the purpose of which is survival. Survival as the purpose of evolutionary innovation is therefore exactly the same as in Darwin’s theory.

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, March 15, 2021, 14:45 (1347 days ago) @ dhw

dhw: I agree thatpast brains would have had the same programme for AUTONOMOUS complexification. And so why could your God not have designed the same mechanism to enable cells to expand as well as complexify through the autonomous process of “handling new uses”?

DAVID: You are backwards. In our brain almost all neurons are present from the beginning. Complexification involves increasing axon networking, not neurons. Only the hippocampus adds neurons.

dhw: You have misread my post. PAST brains would have had the same mechanism for autonomous complexification, and so I am proposing that the same mechanism would have been used to expand PAST brains when their capacity for complexification could not meet PAST requirements.

Not misread. The bolded is dead wrong as stated above.

DAVID: Of course a new weapon at a time of few useful weapons would 'look' big. To do it our new huge brain was barely used, the point you dance around: why so big if hardly used to full capacity.

dhw: It wasn’t our new huge brain that invented the spear! You are completely missing the point.

My point is the tiny advances among early hominins did not require massive brain use.

dhw: It is you who “dance” round the problem, because you cannot tell us why your God would have expanded the brain if it was not going to be required for another 300,000 years. Your only theory is that we had to learn to use it, although how you can learn to use something and yet produce nothing is beyond my understanding.

My statement that a designing God anticipate future use of the brain answers the question. Stasis is your problem not mine. Why does a brain naturally way over-expand? You have no natural answer, which why you scream about my bringing up natural causes in recent posts.


SURVIVAL

dhw: Even if your God did design the flipper, the purpose is the driving force behind any action, and if the purpose was survival, then it is illogical to say that survival of the whale was not the driving force behind your God’s evolutionary action. Why else would he have designed the flipper? Please answer.

DAVID: My point is God guarantees survival by preparing all new organisms/species with a proper design of parts to fit whatever new environmental challenges the new organism will meet. Simply God is the driving force for evolution and survival is obviously a necessary part.

dhw: No problem, then. In your theory, God is the driving force who designs all the innovations, and the purpose of the innovations is to improve organisms’ chances of survival in changing environments. And so when you wrote “survival never drives evolution”, you only meant that God designs all the innovations, the purpose of which is survival. Survival as the purpose of evolutionary innovation is therefore exactly the same as in Darwin’s theory.

Complete opposite: Difference in driving force is the issue you miss. God drives evolution, guarantees survival while Darwin says the need for survival drives evolution.

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, March 16, 2021, 11:47 (1346 days ago) @ David Turell

dhw: I agree that past brains would have had the same programme for AUTONOMOUS complexification. And so why could your God not have designed the same mechanism to enable cells to expand as well as complexify through the autonomous process of “handling new uses”?

DAVID: You are backwards. In our brain almost all neurons are present from the beginning. Complexification involves increasing axon networking, not neurons. Only the hippocampus adds neurons.

dhw: You have misread my post. PAST brains would have had the same mechanism for autonomous complexification, and so I am proposing that the same mechanism would have been used to expand PAST brains when their capacity for complexification could not meet PAST requirements.

DAVID: Not misread. The bolded is dead wrong as stated above.

I was agreeing with your statement: “Yes, God programmed our neurons to complexify in our big brain as necessary to handle new uses. And I think past brains had the same program.[/b]” (I say AUTONOMOUS because if complexification can handle new uses, it doesn't need God to keep popping in with instructions for each new use.) How can it be dead right on Sunday and dead wrong on Monday?

DAVID: Of course a new weapon at a time of few useful weapons would 'look' big. To do it our new huge brain was barely used, the point you dance around: why so big if hardly used to full capacity.

dhw: It wasn’t our new huge brain that invented the spear! You are completely missing the point.

DAVID: My point is the tiny advances among early hominins did not require massive brain use.

Your point has always been that your God expanded all earlier brains in anticipation of new uses. Are you now saying the new uses were too tiny to require your God’s successive brain operations? Then why did he bother to expand early brains?

dhw: It is you who “dance” round the problem [stasis], because you cannot tell us why your God would have expanded the brain if it was not going to be required for another 300,000 years. Your only theory is that we had to learn to use it, although how you can learn to use something and yet produce nothing is beyond my understanding.

DAVID: My statement that a designing God anticipate future use of the brain answers the question. Stasis is your problem not mine. Why does a brain naturally way over-expand? You have no natural answer, which why you scream about my bringing up natural causes in recent posts.

Your statement does not explain anything! Why operate on the brain 300,000 years before any change is needed? And why do you harp on about overexpansion? Nobody knows why any stage of the brain expanded to its past or present sizes, but I gave you a list of possible causes. Once the sapiens brain had met its unknown new requirement, there were no more new requirements for 300,000 years. But then the brain did not expand. Instead it complexified, and complexification was so efficient that some of the cells required 315,000 years ago were no longer needed (= shrinkage). Now please tell us why you think your God overexpanded our brain 300,000 years before any change was needed, apart from hhis metaphorically gazing into his crystal ball.

SURVIVAL

dhw: In your theory, God is the driving force who designs all the innovations, and the purpose of the innovations is to improve organisms’ chances of survival in changing environments. And so when you wrote “survival never drives evolution”, you only meant that God designs all the innovations, the purpose of which is survival. Survival as the purpose of evolutionary innovation is therefore exactly the same as in Darwin’s theory.

DAVID: Complete opposite: Difference in driving force is the issue you miss. God drives evolution, guarantees survival while Darwin says the need for survival drives evolution.

Nothing “guarantees” survival, since 99% of species have died out. You are once again conflating “life” with living organisms. Innovations take place in living organisms, not so that life can go on in no matter what form. If your God’s purpose in replacing pre-whales’ legs with flippers was to improve their chances of surviving in water, then the purpose of the evolutionary innovation was survival, which is precisely what Darwin argues. We are having a non-argument here. We can agree that if God exists, he is the driving force behind evolution (whether he designed every species or gave organisms free rein), and the purpose of all the adaptations and innovations was to improve the organism’s chance of survival. The latter is Darwin’s theory, and if you’d rather not describe the purpose of something as a “driving force”, then that’s fine with me.

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, March 16, 2021, 18:24 (1346 days ago) @ dhw

DAVID: You are backwards. In our brain almost all neurons are present from the beginning. Complexification involves increasing axon networking, not neurons. Only the hippocampus adds neurons.

dhw: I was agreeing with your statement: “Yes, God programmed our neurons to complexify in our big brain as necessary to handle new uses. And I think past brains had the same program.[/b]” (I say AUTONOMOUS because if complexification can handle new uses, it doesn't need God to keep popping in with instructions for each new use.) How can it be dead right on Sunday and dead wrong on Monday?

To clear it up: Your statement of added neurons was incorrect as it applied to the study on illiterate Italian women, who had thickening in the Cortex and visual areas, regions that don't add neurons. In London cabbies where only memory is required, the hippocampus thickened and is presumed to have added neurons. Therefore, in most activities requiring complex brain activities in several areas more axon connections do the complexification, not new neurons. Consider the violinist: Some hippocampal enlargement is reasonable, but all the visual, aural and muscular activity creates axonal complexity in other regions.


DAVID: My point is the tiny advances among early hominins did not require massive brain use.

dhw: Your point has always been that your God expanded all earlier brains in anticipation of new uses. Are you now saying the new uses were too tiny to require your God’s successive brain operations? Then why did he bother to expand early brains?

Stasis is your problem I raised long ago. My view is God anticipates future use.

dhw: Your statement does not explain anything! Why operate on the brain 300,000 years before any change is needed? And why do you harp on about overexpansion? Nobody knows why any stage of the brain expanded to its past or present sizes, but I gave you a list of possible causes. Once the sapiens brain had met its unknown new requirement, there were no more new requirements for 300,000 years. But then the brain did not expand. Instead it complexified, and complexification was so efficient that some of the cells required 315,000 years ago were no longer needed (= shrinkage). Now please tell us why you think your God overexpanded our brain 300,000 years before any change was needed, apart from his metaphorically gazing into his crystal ball.

You can't explain a natural cause of such a big brain appearing with so little to do. You've never presented cogent answer, just describe what we know happened as above. God anticipates usage as He designs advances in evolution.


SURVIVAL

dhw: In your theory, God is the driving force who designs all the innovations, and the purpose of the innovations is to improve organisms’ chances of survival in changing environments. And so when you wrote “survival never drives evolution”, you only meant that God designs all the innovations, the purpose of which is survival. Survival as the purpose of evolutionary innovation is therefore exactly the same as in Darwin’s theory.

DAVID: Complete opposite: Difference in driving force is the issue you miss. God drives evolution, guarantees survival while Darwin says the need for survival drives evolution.

dhw: Nothing “guarantees” survival, since 99% of species have died out. You are once again conflating “life” with living organisms. Innovations take place in living organisms, not so that life can go on in no matter what form. If your God’s purpose in replacing pre-whales’ legs with flippers was to improve their chances of surviving in water, then the purpose of the evolutionary innovation was survival, which is precisely what Darwin argues. We are having a non-argument here. We can agree that if God exists, he is the driving force behind evolution (whether he designed every species or gave organisms free rein), and the purpose of all the adaptations and innovations was to improve the organism’s chance of survival. The latter is Darwin’s theory, and if you’d rather not describe the purpose of something as a “driving force”, then that’s fine with me.

The concept 'life' is represented by living organisms, so that is my shorthand usage. You can keep Darwin theory for yourself. All I accept is common descent from original Archaea.

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, March 17, 2021, 12:31 (1345 days ago) @ David Turell

DAVID: You are backwards. In our brain almost all neurons are present from the beginning. Complexification involves increasing axon networking, not neurons. Only the hippocampus adds neurons. […] The bolded is dead wrong…

dhw: I was agreeing with your statement: “Yes, God programmed our neurons to complexify in our big brain as necessary to handle new uses. And I think past brains had the same program.” (I say AUTONOMOUS because if complexification can handle new uses, it doesn't need God to keep popping in with instructions for each new use.) How can it be dead right on Sunday and dead wrong on Monday?

DAVID: To clear it up: Your statement of added neurons was incorrect as it applied to the study on illiterate Italian women, who had thickening in the Cortex and visual areas, regions that don't add neurons.

I never stated any such thing! Expansion did not apply to the Indian women!!!! Their brains complexified!

DAVID: In London cabbies where only memory is required, the hippocampus thickened and is presumed to have added neurons. Therefore, in most activities requiring complex brain activities in several areas more axon connections do the complexification, not new neurons.

And so we have two examples in which the brain changes IN RESPONSE to new requirements: the first results in complexification, and the second in expansion, and you use these two examples to try and disprove my proposal that the same mechanisms could have been at work in the past, when the smaller brain would have complexified until its capacity was exceeded by new requirements, and then it expanded. Although you have tried to misrepresent what I wrote, thank you for this clear evidence of its feasibility.

DAVID: My point is the tiny advances among early hominins did not require massive brain use.

dhw: Your point has always been that your God expanded all earlier brains in anticipation of new uses. Are you now saying the new uses were too tiny to require your God’s successive brain operations? Then why did he bother to expand early brains?

DAVID: Stasis is your problem I raised long ago. My view is God anticipates future use.

Instead of answering my now bolded question, you have once more switched to stasis, which I have covered over and over again! Stasis followed each expansion because there were no new requirements that needed extra capacity. When sapiens was faced with new requirements after the initial expansion, the brain (apart from the hippocampus) complexified, presumably because further expansion would have created problems for the anatomy. Now please answer my bolded question

dhw: […] complexification was so efficient that some of the cells required 315,000 years ago were no longer needed (= shrinkage). Now please tell us why you think your God overexpanded our brain 300,000 years before any change was needed, apart from his metaphorically gazing into his crystal ball.

DAVID: You can't explain a natural cause of such a big brain appearing with so little to do. You've never presented cogent answer, just describe what we know happened as above. God anticipates usage as He designs advances in evolution.

Nobody knows why any of the pre-sapiens brains expanded, but I keep offering you possible causes and you keep ignoring them: new tools, new weapons, new ideas, new environments, new discoveries and in all cases, INCLUDING THE EXPANSION FROM PRE-SAPIENS TO SAPIENS, the initial requirements could only be met by an increase in the number of cells. See above for what happened next.

SURVIVAL

dhw: We can agree that if God exists, he is the driving force behind evolution (whether he designed every species or gave organisms free rein), and the purpose of all the adaptations and innovations was to improve the organism’s chance of survival. The latter is Darwin’s theory, and if you’d rather not describe the purpose of something as a “driving force”, then that’s fine with me.

DAVID: The concept 'life' is represented by living organisms, so that is my shorthand usage. You can keep Darwin theory for yourself. All I accept is common descent from original Archaea.

If only that was all you “accepted”, most of these discussions would have ended long ago. But you go on “accepting” that your God directly designed every species, that he did so for the sole purpose of designing sapiens although 99% of extinct life forms had no connection with sapiens, and that although your God designed evolutionary innovations in order to enable organisms to survive, you do not accept the theory that the purpose of evolutionary innovations was to improve chances of survival.

Evolution: more genomic evidence of pre-planning

by David Turell @, Wednesday, March 17, 2021, 15:54 (1345 days ago) @ dhw

DAVID: To clear it up: Your statement of added neurons was incorrect as it applied to the study on illiterate Italian women, who had thickening in the Cortex and visual areas, regions that don't add neurons.

dhw: I never stated any such thing! Expansion did not apply to the Indian women!!!! Their brains complexified!

From March 14, dhw: " And so why could your God not have designed the same mechanism to enable cells to expand as well as complexify through the autonomous process of “handling new uses”?

My objection was only the hippocampus has this designed ability.


DAVID: In London cabbies where only memory is required, the hippocampus thickened and is presumed to have added neurons. Therefore, in most activities requiring complex brain activities in several areas more axon connections do the complexification, not new neurons.

dhw: And so we have two examples in which the brain changes IN RESPONSE to new requirements: the first results in complexification, and the second in expansion, and you use these two examples to try and disprove my proposal that the same mechanisms could have been at work in the past, when the smaller brain would have complexified until its capacity was exceeded by new requirements, and then it expanded. Although you have tried to misrepresent what I wrote, thank you for this clear evidence of its feasibility.

Tiny expansions in our brains prove nothing about the past, other than those brains probably had the same small expansions.


DAVID: My point is the tiny advances among early hominins did not require massive brain use.

dhw: Your point has always been that your God expanded all earlier brains in anticipation of new uses. Are you now saying the new uses were too tiny to require your God’s successive brain operations? Then why did he bother to expand early brains?

DAVID: Stasis is your problem I raised long ago. My view is God anticipates future use.

Instead of answering my now bolded question, you have once more switched to stasis, which I have covered over and over again! Stasis followed each expansion because there were no new requirements that needed extra capacity.... Now please answer my bolded question

I did. God is the cause for stasis. Your repeated discussion explains nothing, because I entered the concept of stasis long ago To emphasize the issue: why a huge brain so early before it was really used? You never have had a valid explanation.


SURVIVAL

dhw: We can agree that if God exists, he is the driving force behind evolution (whether he designed every species or gave organisms free rein), and the purpose of all the adaptations and innovations was to improve the organism’s chance of survival. The latter is Darwin’s theory, and if you’d rather not describe the purpose of something as a “driving force”, then that’s fine with me.

DAVID: The concept 'life' is represented by living organisms, so that is my shorthand usage. You can keep Darwin theory for yourself. All I accept is common descent from original Archaea.

dhw: If only that was all you “accepted”, most of these discussions would have ended long ago. But you go on “accepting” that your God directly designed every species, that he did so for the sole purpose of designing sapiens although 99% of extinct life forms had no connection with sapiens, and that although your God designed evolutionary innovations in order to enable organisms to survive, you do not accept the theory that the purpose of evolutionary innovations was to improve chances of survival.

I fully agree the new adaptations improved survival. My point you have avoided in this discussion is survival does not drive evolution, God does. That is the reason all I accept from Darwin in common descent, designed by God.

Evolution: more genomic evidence of pre-planning

by dhw, Thursday, March 18, 2021, 11:06 (1344 days ago) @ David Turell

DAVID: To clear it up: Your statement of added neurons was incorrect as it applied to the study on illiterate Italian women, who had thickening in the Cortex and visual areas, regions that don't add neurons.

dhw: I never stated any such thing! Expansion did not apply to the Indian women!!!! Their brains complexified!

DAVID: From March 14, dhw: " And so why could your God not have designed the same mechanism to enable cells to expand as well as complexify through the autonomous process of “handling new uses”? My objection was only the hippocampus has this designed ability

March 13, dhw: “If new requirements such as reading complexify the brain, what programmes are the neurons following….Are you now saying your God preprogrammed the neurons specifically to respond to the task of reading?” I specifically said “complexify”, and I asked why your God could not have designed the same mechanism to expand as well as complexify. What is “incorrect”? And why didn’t you answer?

DAVID: In London cabbies where only memory is required, the hippocampus thickened and is presumed to have added neurons. Therefore, in most activities requiring complex brain activities in several areas more axon connections do the complexification, not new neurons.

dhw: And so we have two examples in which the brain changes IN RESPONSE to new requirements: the first results in complexification, and the second in expansion, and you use these two examples to try and disprove my proposal that the same mechanisms could have been at work in the past, when the smaller brain would have complexified until its capacity was exceeded by new requirements, and then it expanded. Although you have tried to misrepresent what I wrote, thank you for this clear evidence of its feasibility.

DAVID: Tiny expansions in our brains prove nothing about the past, other than those brains probably had the same small expansions.

If we had proof, there would be nothing to discuss, and that applies to every subject from brain expansion to the existence of God. That is why we keep proposing and analysing the logic of different theories. So please tell me why it is illogical to suggest that since the modern brain RESPONDS to new requirements by complexifying and expanding on a small scale, it may have done the same in the past, but when brains were smaller, they responded by expanding on a larger scale.

DAVID: My point is the tiny advances among early hominins did not require massive brain use.

dhw: Your point has always been that your God expanded all earlier brains in anticipation of new uses. Are you now saying the new uses were too tiny to require your God’s successive brain operations? Then why did he bother to expand early brains?

DAVID: Stasis is your problem I raised long ago. My view is God anticipates future use.

dhw: Instead of answering my now bolded question, you have once more switched to stasis, which I have covered over and over again! Stasis followed each expansion because there were no new requirements that needed extra capacity.... Now please answer my bolded question.

DAVID: I did. God is the cause for stasis. Your repeated discussion explains nothing, because I entered the concept of stasis long ago To emphasize the issue: why a huge brain so early before it was really used? You never have had a valid explanation.

You continue to avoid my bolded question, and you continue to dwell on stasis! I gave you a complete explanation, which you have shortened, and your response is to say it explains nothing, although you don’t say what is wrong with it! Once more: the sapiens brain expanded to its full size IN ORDER TO MEET UNKNOWN NEW REQUIREMENTS. Then there were no more new requirements until 300,000 years later, but instead of expanding again, it complexified presumably because further expansions would have created problems for the anatomy. Complexification proved so efficient that some cells were no longer necessary (= shrinkage.) Please tell us what is illogical about such a theory, and then please answer the bolded question above, since you have argued that past requirements were too “tiny” to require the earlier expansions.

SURVIVAL

dhw: We can agree that if God exists, he is the driving force behind evolution (whether he designed every species or gave organisms free rein), and the purpose of all the adaptations and innovations was to improve the organism’s chance of survival. The latter is Darwin’s theory, and if you’d rather not describe the purpose of something as a “driving force”, then that’s fine with me. […]

DAVID: I fully agree the new adaptations improved survival. My point you have avoided in this discussion is survival does not drive evolution, God does. That is the reason all I accept from Darwin in common descent, designed by God.

I’ve left out the bits in between. Since you agree that the purpose of new adaptations was to improve survival (regardless of whether your God designed them or not), you are in agreement with Darwin that the purpose of new adaptations was to improve survival. We do not need to use the words “driving force”.

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, March 18, 2021, 15:01 (1344 days ago) @ dhw
edited by David Turell, Thursday, March 18, 2021, 15:06

DAVID: Tiny expansions in our brains prove nothing about the past, other than those brains probably had the same small expansions.

dhw: If we had proof, there would be nothing to discuss, and that applies to every subject from brain expansion to the existence of God. That is why we keep proposing and analysing the logic of different theories. So please tell me why it is illogical to suggest that since the modern brain RESPONDS to new requirements by complexifying and expanding on a small scale, it may have done the same in the past, but when brains were smaller, they responded by expanding on a larger scale.

We have no proof, only our separate theories of a reason for 200 cc expansion in more ancient hominins.


DAVID: My point is the tiny advances among early hominins did not require massive brain use.

dhw: Your point has always been that your God expanded all earlier brains in anticipation of new uses. Are you now saying the new uses were too tiny to require your God’s successive brain operations? Then why did he bother to expand early brains?

DAVID: Stasis is your problem I raised long ago. My view is God anticipates future use.

dhw: Instead of answering my now bolded question, you have once more switched to stasis, which I have covered over and over again! Stasis followed each expansion because there were no new requirements that needed extra capacity.... Now please answer my bolded question.

DAVID: I did. God is the cause for stasis. Your repeated discussion explains nothing, because I entered the concept of stasis long ago To emphasize the issue: why a huge brain so early before it was really used? You never have had a valid explanation.

dhw: You continue to avoid my bolded question, and you continue to dwell on stasis! I gave you a complete explanation, which you have shortened, and your response is to say it explains nothing, although you don’t say what is wrong with it! Once more: the sapiens brain expanded to its full size IN ORDER TO MEET UNKNOWN NEW REQUIREMENTS. Then there were no more new requirements until 300,000 years later,

I don't avoid your question. You don't accept my answer. The bold is the nub of the issue. Your interpretation is not mine. The logical reason for a giant brain totally underused, is arrival in anticipation of future use. This is easily seen if one accepts God as in control of evolution. You have never explained stasis, just a lot of palaver around the issue, as evidenced by your complaint that I raise the issue, which I first presented as a concept for discussion. Stasis equals obvious underuse for the current size. The problem is not seen in fossil studies of evolution in any other circumstance than brain enlargement in the human line. That is because our unexpected appearance is an extremely important philosophical issue as raised by Adler.

SURVIVAL

dhw: We can agree that if God exists, he is the driving force behind evolution (whether he designed every species or gave organisms free rein), and the purpose of all the adaptations and innovations was to improve the organism’s chance of survival. The latter is Darwin’s theory, and if you’d rather not describe the purpose of something as a “driving force”, then that’s fine with me. […]

DAVID: I fully agree the new adaptations improved survival. My point you have avoided in this discussion is survival does not drive evolution, God does. That is the reason all I accept from Darwin in common descent, designed by God.

dhw: I’ve left out the bits in between. Since you agree that the purpose of new adaptations was to improve survival (regardless of whether your God designed them or not), you are in agreement with Darwin that the purpose of new adaptations was to improve survival. We do not need to use the words “driving force”.

Why not use 'driving' just as I use stasis? It disturbs your comfort worth your agnostic use of Darwin. Using Darwin and his theory of constant struggle to survive, why any stasis in anything? Prompt use of a new tool aids survival, doesn't it? Stasis is very disturbing to his theory which you rely upon.

Evolution: more genomic evidence of pre-planning

by dhw, Friday, March 19, 2021, 12:13 (1343 days ago) @ David Turell

DAVID: Tiny expansions in our brains prove nothing about the past, other than those brains probably had the same small expansions.

dhw: If we had proof, there would be nothing to discuss, and that applies to every subject from brain expansion to the existence of God. That is why we keep proposing and analysing the logic of different theories. So please tell me why it is illogical to suggest that since the modern brain RESPONDS to new requirements by complexifying and expanding on a small scale, it may have done the same in the past, but when brains were smaller, they responded by expanding on a larger scale.

DAVID: We have no proof, only our separate theories of a reason for 200 cc expansion in more ancient hominins.

Correct. So now please tell me why you regard my theory as illogical.

DAVID: My point is the tiny advances among early hominins did not require massive brain use.

dhw: Your point has always been that your God expanded all earlier brains in anticipation of new uses. Are you now saying the new uses were too tiny to require your God’s successive brain operations? Then why did he bother to expand early brains?[…]

DAVID: […] The logical reason for a giant brain totally underused, is arrival in anticipation of future use.

This has nothing to do with the earlier expansions. Why did he expand earlier brains if the new requirements were too tiny to need expansion? Please note that our ancestors lived for hundreds of thousands of years with no apparent advances in their lifestyles that we know of, apart from improved artefacts. Long periods without change are what we mean by “stasis”. They arise because there is no NEED for change.

DAVID: You have never explained stasis, just a lot of palaver around the issue, as evidenced by your complaint that I raise the issue, which I first presented as a concept for discussion. Stasis equals obvious underuse for the current size.

My complaint is not that you raised the issue, but that (a) you keep dodging the bolded question, and (b) you keep returning to stasis when I have given you a perfectly logical explanation. Stasis does not “equal” underuse. It simply means a state or period in which there is no change. My explanation yet again: The human brain expanded to its present size to meet some unknown requirement, and then – as with every preceding stage of brain – there were no new requirements. In the past, stasis ended when the existing capacity was too small to meet new requirements (hence expansion), and when the pre-sapiens brain expanded to sapiens size, the new size was adequate for sapiens’ needs. But when eventually there were new requirements, instead of expanding (and presumably causing problems for the anatomy) the brain enhanced its existing ability to complexify. If the new ideas, discoveries, inventions, lifestyles had occurred earlier, the brain would have complexified earlier. There is no “underuse”. Whether your God performed the initial sapiens expansion operation for no immediate purpose, or the cell communities added cells to meet a particular requirement makes no difference to the facts: 315,000 years ago the brain expanded, for 300,000 years there were no new requirements (stasis), and when there were new requirements, it complexified instead of expanding. And we know for a fact that the brain changes IN RESPONSE to new requirements, not in anticipation of them. What is your problem with this explanation?

DAVID: The problem is not seen in fossil studies of evolution in any other circumstance than brain enlargement in the human line. That is because our unexpected appearance is an extremely important philosophical issue as raised by Adler.

Yes, we are special. That does not make your theory of brain expansion any more logical than mine, and it does not answer the bolded question concerning why your God would have expanded earlier brains if the new uses were too "tiny" to need expansion.

SURVIVAL
dhw: Since you agree that the purpose of new adaptations was to improve survival (regardless of whether your God designed them or not), you are in agreement with Darwin that the purpose of new adaptations was to improve survival. We do not need to use the words “driving force”.

DAVID: Why not use 'driving' just as I use stasis? It disturbs your comfort worth your agnostic use of Darwin. Using Darwin and his theory of constant struggle to survive, why any stasis in anything? Prompt use of a new tool aids survival, doesn't it? Stasis is very disturbing to his theory which you rely upon.

I am perfectly happy to say that purpose is a driving force, but you want to confine the term to the power which you believe has and fulfils the purpose. Your question concerning stasis is absurd: life forms find a mode of life which enables them to survive. If no change is required, there is stasis in their development. If change is required, they adapt or, in some cases, innovate, or they die. End of stasis. Thank you for agreeing that a new tool aids survival. The purpose of “aiding survival” is the driving force behind its invention, but you don’t like me using the term, so I’ll stick to purpose. How on earth does this count as a “disturbance” to the theory that survival is the purpose for evolutionary change? Stasis is simply what occurs when there is no need for change.

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, March 19, 2021, 15:14 (1343 days ago) @ dhw

DAVID: […] The logical reason for a giant brain totally underused, is arrival in anticipation of future use.

dhw: This has nothing to do with the earlier expansions. Why did he expand earlier brains if the new requirements were too tiny to need expansion? Please note that our ancestors lived for hundreds of thousands of years with no apparent advances in their lifestyles that we know of, apart from improved artefacts. Long periods without change are what we mean by “stasis”. They arise because there is no NEED for change.

You've stated my prime point in the bold. Big brain without need can only mean enlargement in anticipation of need as designed by God.


DAVID: You have never explained stasis, just a lot of palaver around the issue, as evidenced by your complaint that I raise the issue, which I first presented as a concept for discussion. Stasis equals obvious underuse for the current size.

dhw: My complaint is not that you raised the issue, but that (a) you keep dodging the bolded question, and (b) you keep returning to stasis when I have given you a perfectly logical explanation. Stasis does not “equal” underuse. It simply means a state or period in which there is no change. My explanation yet again: The human brain expanded to its present size to meet some unknown requirement, and then – as with every preceding stage of brain – there were no new requirements. In the past, stasis ended when the existing capacity was too small to meet new requirements (hence expansion), and when the pre-sapiens brain expanded to sapiens size, the new size was adequate for sapiens’ needs. But when eventually there were new requirements, instead of expanding (and presumably causing problems for the anatomy) the brain enhanced its existing ability to complexify. If the new ideas, discoveries, inventions, lifestyles had occurred earlier, the brain would have complexified earlier. There is no “underuse”. Whether your God performed the initial sapiens expansion operation for no immediate purpose, or the cell communities added cells to meet a particular requirement makes no difference to the facts: 315,000 years ago the brain expanded, for 300,000 years there were no new requirements (stasis), and when there were new requirements, it complexified instead of expanding. And we know for a fact that the brain changes IN RESPONSE to new requirements, not in anticipation of them. What is your problem with this explanation?

As above: there is no reason for an oversized brain to arrive to cover minor new adaptations, based on adaptations we see today. Your long review of stasis doesn't answer the question of stasis: 200 cc additions are full new speciation. We currently cannot explain speciation as a natural event. I say God speciates.


DAVID: The problem is not seen in fossil studies of evolution in any other circumstance than brain enlargement in the human line. That is because our unexpected appearance is an extremely important philosophical issue as raised by Adler.

dhw: Yes, we are special. That does not make your theory of brain expansion any more logical than mine, and it does not answer the bolded question concerning why your God would have expanded earlier brains if the new uses were too "tiny" to need expansion.

Remember, God designs to anticipate future use.


SURVIVAL
dhw: Since you agree that the purpose of new adaptations was to improve survival (regardless of whether your God designed them or not), you are in agreement with Darwin that the purpose of new adaptations was to improve survival. We do not need to use the words “driving force”.

DAVID: Why not use 'driving' just as I use stasis? It disturbs your comfort worth your agnostic use of Darwin. Using Darwin and his theory of constant struggle to survive, why any stasis in anything? Prompt use of a new tool aids survival, doesn't it? Stasis is very disturbing to his theory which you rely upon.

dhw: I am perfectly happy to say that purpose is a driving force, but you want to confine the term to the power which you believe has and fulfils the purpose. Your question concerning stasis is absurd: life forms find a mode of life which enables them to survive. If no change is required, there is stasis in their development. If change is required, they adapt or, in some cases, innovate, or they die. End of stasis. Thank you for agreeing that a new tool aids survival. The purpose of “aiding survival” is the driving force behind its invention, but you don’t like me using the term, so I’ll stick to purpose. How on earth does this count as a “disturbance” to the theory that survival is the purpose for evolutionary change? Stasis is simply what occurs when there is no need for change.

Which again raises the same obvious question. Why do oversized brains suddenly appear creating the philosophic problem of stasis? As above, you describe stasis as we see it, but that doesn't explain the burst in size when not needed.

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, March 20, 2021, 08:58 (1343 days ago) @ David Turell

DAVID: […] The logical reason for a giant brain totally underused, is arrival in anticipation of future use.

dhw: This has nothing to do with the earlier expansions. Why did he expand earlier brains if the new requirements were too tiny to need expansion? Please note that our ancestors lived for hundreds of thousands of years with no apparent advances in their lifestyles that we know of, apart from improved artefacts. Long periods without change are what we mean by “stasis”. They arise because there is no NEED for change.

DAVID: You've stated my prime point in the bold. Big brain without need can only mean enlargement in anticipation of need as designed by God.

And you have entirely missed my point! You say that earlier requirements were too tiny to require additional brain cells. That can only mean that every earlier expansion had no purpose! Your God just popped in, added 200 cc worth of cells to successive species of homo for no reason at all, except to make sure that eventually it would add up to 1350 cc and H. sapiens could then embark on a new career after 300,000 years doing nothing with his 1350 cc. I’m sorry, but I find that somewhat unconvincing. I suggest that each addition to the brain was accompanied by some kind of change – whether with artefacts, new ideas, discoveries, lifestyles, adaptations to new environments – any one of which could have exceeded the existing capacity and required additional cells.

DAVID: there is no reason for an oversized brain to arrive to cover minor new adaptations, based on adaptations we see today. Your long review of stasis doesn't answer the question of stasis: 200 cc additions are full new speciation. We currently cannot explain speciation as a natural event. I say God speciates.

What was the point of new speciation if the new species did nothing with the new brain and never needed it in the first place? What has stasis, which occurs when there is no change, got to do with speciation? Nobody can explain speciation, but I doubt if you will find many folk even in ID circles who will swallow the idea that your God designed various new species of homo for no reason other than to gradually build up the quantity of brain cells to 1350 cc for some vague future use. Once more, my counter proposal: each successive brain expansion was caused by a new requirement for which the smaller brain did not have sufficient capacity. Once the requirement was met, there was stasis until the next major requirement resulted in another expansion. Same process with the first sapiens: unknown requirement needed additional cells….period of stasis…but then new requirements met by enhanced complexification.

DAVID: The problem is not seen in fossil studies of evolution in any other circumstance than brain enlargement in the human line. That is because our unexpected appearance is an extremely important philosophical issue as raised by Adler.

dhw: Yes, we are special. That does not make your theory of brain expansion any more logical than mine, and it does not answer the bolded question concerning why your God would have expanded earlier brains if the new uses were too "tiny" to need expansion.

DAVID: Remember, God designs to anticipate future use.

I suggest that your purposeful God (or the cell communities which he may have designed) is more likely to have had an immediate purpose for each successive expansion rather than to have added cells in instalments for no reason other than to meet unspecified requirements a couple of million years later.

SURVIVAL
dhw: Thank you for agreeing that a new tool aids survival. The purpose of “aiding survival” is the driving force behind its invention, but you don’t like me using the term, so I’ll stick to purpose. How on earth does this count as a “disturbance” to the theory that survival is the purpose for evolutionary change? Stasis is simply what occurs when there is no need for change.

DAVID: Which again raises the same obvious question. Why do oversized brains suddenly appear creating the philosophic problem of stasis? As above, you describe stasis as we see it, but that doesn't explain the burst in size when not needed.

In my theory each “burst in size” IS needed! And this has nothing to do with stasis, which simply means that after the initial fulfilment of need there were no further needs. And this in turn has nothing to do with your attempt to avoid the obvious fact that any evolutionary changes that are made for the purpose of improving chances of survival confirm that the motive for the evolutionary changes is to improve chances of survival! Some of us would say that the motive for doing something is a driving force.

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, March 20, 2021, 13:56 (1342 days ago) @ dhw

DAVID: You've stated my prime point in the bold. Big brain without need can only mean enlargement in anticipation of need as designed by God.

dhw: nd you have entirely missed my point! You say that earlier requirements were too tiny to require additional brain cells. That can only mean that every earlier expansion had no purpose! Your God just popped in, ... I’m sorry, but I find that somewhat unconvincing. I suggest that each addition to the brain was accompanied by some kind of change – whether with artefacts, new ideas, discoveries, lifestyles, adaptations to new environments – any one of which could have exceeded the existing capacity and required additional cells.

I'm not surprised you are not convinced. I've demonstrated God's likely purpose, but you don't accept God, so my point won't appeal to you


DAVID: there is no reason for an oversized brain to arrive to cover minor new adaptations, based on adaptations we see today. Your long review of stasis doesn't answer the question of stasis: 200 cc additions are full new speciation. We currently cannot explain speciation as a natural event. I say God speciates.

dhw: What was the point of new speciation if the new species did nothing with the new brain and never needed it in the first place? What has stasis, which occurs when there is no change, got to do with speciation? Nobody can explain speciation, but I doubt if you will find many folk even in ID circles who will swallow the idea that your God designed various new species of homo for no reason other than to gradually build up the quantity of brain cells to 1350 cc for some vague future use. Once more, my counter proposal: each successive brain expansion was caused by a new requirement for which the smaller brain did not have sufficient capacity. Once the requirement was met, there was stasis until the next major requirement resulted in another expansion. Same process with the first sapiens: unknown requirement needed additional cells….period of stasis…but then new requirements met by enhanced complexification.

A repeat of your position which simply doesn't accept the concept that God speciates and prepares them in advance of new needs. You are left with natural speciation which doesn't explain the new massive enlargement for small developments in lifestyle.


DAVID: The problem is not seen in fossil studies of evolution in any other circumstance than brain enlargement in the human line. That is because our unexpected appearance is an extremely important philosophical issue as raised by Adler.

dhw: Yes, we are special. That does not make your theory of brain expansion any more logical than mine, and it does not answer the bolded question concerning why your God would have expanded earlier brains if the new uses were too "tiny" to need expansion.

DAVID: Remember, God designs to anticipate future use.

dhw: I suggest that your purposeful God (or the cell communities which he may have designed) is more likely to have had an immediate purpose for each successive expansion rather than to have added cells in instalments for no reason other than to meet unspecified requirements a couple of million years later.

You don't answer the issue as you have admitted recently the new demands were minimal .


SURVIVAL
dhw: Thank you for agreeing that a new tool aids survival. The purpose of “aiding survival” is the driving force behind its invention, but you don’t like me using the term, so I’ll stick to purpose. How on earth does this count as a “disturbance” to the theory that survival is the purpose for evolutionary change? Stasis is simply what occurs when there is no need for change.

DAVID: Which again raises the same obvious question. Why do oversized brains suddenly appear creating the philosophic problem of stasis? As above, you describe stasis as we see it, but that doesn't explain the burst in size when not needed.

dhw: In my theory each “burst in size” IS needed! And this has nothing to do with stasis, which simply means that after the initial fulfilment of need there were no further needs. And this in turn has nothing to do with your attempt to avoid the obvious fact that any evolutionary changes that are made for the purpose of improving chances of survival confirm that the motive for the evolutionary changes is to improve chances of survival! Some of us would say that the motive for doing something is a driving force.

Yes, those who do not recognize God would adopt that position.

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, March 21, 2021, 10:49 (1341 days ago) @ David Turell

DAVID: You've stated my prime point in the bold. Big brain without need can only mean enlargement in anticipation of need as designed by God.

dhw: And you have entirely missed my point! You say that earlier requirements were too tiny to require additional brain cells. That can only mean that every earlier expansion had no purpose! Your God just popped in, ... I’m sorry, but I find that somewhat unconvincing. I suggest that each addition to the brain was accompanied by some kind of change – whether with artefacts, new ideas, discoveries, lifestyles, adaptations to new environments – any one of which could have exceeded the existing capacity and required additional cells.

DAVID: I'm not surprised you are not convinced. I've demonstrated God's likely purpose, but you don't accept God, so my point won't appeal to you.

My theory allows for God, and what I do not accept is the illogicality of your theory of brain expansion, which is that your God operated on various sets of hominins and homos to increase their brain capacity by approx 200 cc for no immediate purpose but solely in order that a couple of million years later, the size could reach 1350 ccs, still for no particular reason until 300,000 years later, suddenly the extra size came in useful. You can see no sign of any advance from the earliest tree-dwelling ancestor to the earliest homo sapiens. And you cannot see any logic in the proposal that each expansion occurred (using a mechanism which your God may have designed for both complexification and expansion) to serve a specific purpose at the time, e.g. to create new tools, to cope with a new environment, to exploit a new discovery.

DAVID: A repeat of your position which simply doesn't accept the concept that God speciates and prepares them in advance of new needs. You are left with natural speciation which doesn't explain the new massive enlargement for small developments in lifestyle.

I do not accept the concept that God expands brains 200 ccs at a time for no reason other than for them to achieve nothing until a couple of million years and many species of hominin and homo later.

DAVID: You don't answer the issue as you have admitted recently the new demands were minimal.

I have “admitted” no such thing! The demands I have listed would all be major enough in their time to require additional brain cells. Your obsessive dislike of Darwin has led you to brush aside the fact that the PURPOSE of all the changes and advances would have been to improve each species’ chances of survival. (See below.) That never changed from one species to another. This means that there would have been few changes in lifestyle – the aim was always survival. And so, for example, the invention of the spear would have been a major advance, requiring additional brain capacity, but the hunter would have remained a hunter. Now please tell me what “issue” I have not answered.

SURVIVAL

DAVID: Why do oversized brains suddenly appear creating the philosophic problem of stasis? As above, you describe stasis as we see it, but that doesn't explain the burst in size when not needed.

dhw: In my theory each “burst in size” IS needed! And this has nothing to do with stasis, which simply means that after the initial fulfilment of need there were no further needs. And this in turn has nothing to do with your attempt to avoid the obvious fact that any evolutionary changes that are made for the purpose of improving chances of survival confirm that the motive for the evolutionary changes is to improve chances of survival! Some of us would say that the motive for doing something is a driving force.

DAVID: Yes, those who do not recognize God would adopt that position.

According to your theory of evolution, your God was “driven” by one purpose: to design H. sapiens. For some reason which you can’t explain, he was “driven” to directly design millions of life forms etc. that had no connection with humans in order to fulfil the purpose that “drove” him into creating life, which was to create H. sapiens. If you want to play word games, we can carry on. But please don’t pretend that a purpose is not a driving force, whether the term applies to humans or to your God.

Evolution: more genomic evidence of pre-planning

by David Turell @, Sunday, March 21, 2021, 14:41 (1341 days ago) @ dhw

DAVID: I'm not surprised you are not convinced. I've demonstrated God's likely purpose, but you don't accept God, so my point won't appeal to you.

dhw: My theory allows for God, and what I do not accept is the illogicality of your theory of brain expansion, which is that your God operated on various sets of hominins and homos to increase their brain capacity by approx 200 cc for no immediate purpose but solely in order that a couple of million years later, the size could reach 1350 ccs, still for no particular reason until 300,000 years later, suddenly the extra size came in useful. You can see no sign of any advance from the earliest tree-dwelling ancestor to the earliest homo sapiens.

The bold is a total distortion of my views. From before Lucy to latter erectus there were major changes in physiology, anatomy, and lifestyle.

dhw: And you cannot see any logic in the proposal that each expansion occurred (using a mechanism which your God may have designed for both complexification and expansion) to serve a specific purpose at the time, e.g. to create new tools, to cope with a new environment, to exploit a new discovery.

This is a non-answer to 'why so big so early'. Each expansion allows complexification in my theory and is not at issue. Only over-expansion is at issue

DAVID: A repeat of your position which simply doesn't accept the concept that God speciates and prepares them in advance of new needs. You are left with natural speciation which doesn't explain the new massive enlargement for small developments in lifestyle.

dhw: I do not accept the concept that God expands brains 200 ccs at a time for no reason other than for them to achieve nothing until a couple of million years and many species of hominin and homo later.

Gradual developments in brain uses occur in all new-sized brains


DAVID: You don't answer the issue as you have admitted recently the new demands were minimal.

dhw: I have “admitted” no such thing! The demands I have listed would all be major enough in their time to require additional brain cells. Your obsessive dislike of Darwin has led you to brush aside the fact that the PURPOSE of all the changes and advances would have been to improve each species’ chances of survival.

I don't dislike Darwin. but what his blind followers have done to his theory.

dhw: That never changed from one species to another. This means that there would have been few changes in lifestyle – the aim was always survival. And so, for example, the invention of the spear would have been a major advance, requiring additional brain capacity, but the hunter would have remained a hunter. Now please tell me what “issue” I have not answered.

The bold is your admission the bigger brain came with small changes in brain usage.


SURVIVAL

DAVID: Why do oversized brains suddenly appear creating the philosophic problem of stasis? As above, you describe stasis as we see it, but that doesn't explain the burst in size when not needed.

dhw: In my theory each “burst in size” IS needed! And this has nothing to do with stasis, which simply means that after the initial fulfilment of need there were no further needs. And this in turn has nothing to do with your attempt to avoid the obvious fact that any evolutionary changes that are made for the purpose of improving chances of survival confirm that the motive for the evolutionary changes is to improve chances of survival! Some of us would say that the motive for doing something is a driving force.

DAVID: Yes, those who do not recognize God would adopt that position.

dhw: According to your theory of evolution, your God was “driven” by one purpose: to design H. sapiens. For some reason which you can’t explain, he was “driven” to directly design millions of life forms etc. that had no connection with humans in order to fulfil the purpose that “drove” him into creating life, which was to create H. sapiens. If you want to play word games, we can carry on. But please don’t pretend that a purpose is not a driving force, whether the term applies to humans or to your God.

My God is never driven but extremely thoughtful and purposeful in the goals He sees as proper and worthwhile. Again you distort: I have no idea as to why God chose to evolve us, but that is what He did. You give lip-service to our specialness, and then denigrate its philosophical/theological import.

Evolution: more genomic evidence of pre-planning

by dhw, Monday, March 22, 2021, 12:02 (1340 days ago) @ David Turell

DAVID: I'm not surprised you are not convinced. I've demonstrated God's likely purpose, but you don't accept God, so my point won't appeal to you.

dhw: My theory allows for God, and what I do not accept is the illogicality of your theory of brain expansion, which is that your God operated on various sets of hominins and homos to increase their brain capacity by approx 200 cc for no immediate purpose but solely in order that a couple of million years later, the size could reach 1350 ccs, still for no particular reason until 300,000 years later, suddenly the extra size came in useful. You can see no sign of any advance from the earliest tree-dwelling ancestor to the earliest homo sapiens.

DAVID: The bold is a total distortion of my views. From before Lucy to latter erectus there were major changes in physiology, anatomy, and lifestyle.

Last week you were telling us: “My point is the tiny advances among early hominins did not require massive brain use.” “There is no reason for an oversized brain to cover minor new adaptations, based on adaptations we see today.” Tiny advances and minor new adaptations have now turned into major changes in lifestyle. How about major changes in technology too? Did you ever see an ape manufacture a spear or an axe? On Saturday, in reply to my proposal that “each successive brain expansion was caused by a new requirement for which the smaller brain did not have sufficient capacity,” you wrote: “You are left with natural speciation which doesn’t explain the new massive enlargement for small developments in lifestyle.” Now apparently there were major changes in lifestyle. Please make up your mind.

In fact, though, my point was NOT major changes in early lifestyles, but massive changes in pursuit of the same lifestyle, which was based on “the struggle for survival” and consisted basically in finding a place to live safely and means of providing food. Hence my point that the hunter with a new weapon was still a hunter. But I’m not going to complain if you now believe that last week’s tiny advances were in fact major changes. That lies at the heart of my theory.

dhw: And you cannot see any logic in the proposal that each expansion occurred (using a mechanism which your God may have designed for both complexification and expansion) to serve a specific purpose at the time, e.g. to create new tools, to cope with a new environment, to exploit a new discovery.

DAVID: This is a non-answer to 'why so big so early'. Each expansion allows complexification in my theory and is not at issue. Only over-expansion is at issue.

I do not accept your theory of “overexpansion” for pre-sapiens or for sapiens. In my theory, each expansion sufficed for the needs of its time, and each new expansion then met new requirements. I have dealt with sapiens shrinkage elsewhere. “Why so big so early” is only an issue because two days ago you regarded the major changes in lifestyle as tiny advances. It is not an issue if you now accept that there were major advances of some kind (lifestyle is your choice) which required additional brain capacity.

dhw: Your obsessive dislike of Darwin has led you to brush aside the fact that the PURPOSE of all the changes and advances would have been to improve each species’ chances of survival.

DAVID: I don't dislike Darwin. but what his blind followers have done to his theory.

On the subject of survival, you wrote: “Using Darwin and his theory of constant struggle to survive, why any stasis in anything?....Stasis is very disturbing to his theory which you rely upon.” You simply refuse to acknowledge that stasis occurs when the species survives without any new requirements (such as implementing new ideas, exploiting new discoveries, adapting to new conditions etc.). And you simply refuse to acknowledge that all of these are directly geared to “the struggle to survive”.

SURVIVAL
dhw: Some of us would say that the motive for doing something is a driving force.

DAVID: Yes, those who do not recognize God would adopt that position.

dhw: According to your theory of evolution, your God was “driven” by one purpose: to design H. sapiens. For some reason which you can’t explain, he was “driven” to directly design millions of life forms etc. that had no connection with humans in order to fulfil the purpose that “drove” him into creating life, which was to create H. sapiens. If you want to play word games, we can carry on. But please don’t pretend that a purpose is not a driving force, whether the term applies to humans or to your God.

DAVID: My God is never driven but extremely thoughtful and purposeful in the goals He sees as proper and worthwhile. Again you distort: I have no idea as to why God chose to evolve us, but that is what He did. You give lip-service to our specialness, and then denigrate its philosophical/theological import.

Is a purpose a driving force or isn’t it?

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, March 22, 2021, 16:01 (1340 days ago) @ dhw

dhw: You can see no sign of any advance from the earliest tree-dwelling ancestor to the earliest homo sapiens.[/i]

DAVID: The bold is a total distortion of my views. From before Lucy to latter erectus there were major changes in physiology, anatomy, and lifestyle.

dhw: Last week you were telling us: “My point is the tiny advances among early hominins did not require massive brain use.” “There is no reason for an oversized brain to cover minor new adaptations, based on adaptations we see today.”....“You are left with natural speciation which doesn’t explain the new massive enlargement for small developments in lifestyle.” Now apparently there were major changes in lifestyle. Please make up your mind.

You are ignoring the many small steps that led to major changes: Lucy's brain was 400 cc. The growth was on the average 200cc each time until at erectus (1,200 cc) we have stone weapons, hide clothing, fire, cave dwelling, but remember, even the first sapiens (1,350 cc) lived very little differently than erectus. Now brain size growth is finished, shrunk a little and the use of this brain is huge.


dhw: Hence my point that the hunter with a new weapon was still a hunter. But I’m not going to complain if you now believe that last week’s tiny advances were in fact major changes. That lies at the heart of my theory.

And for me it doesn't prove the need for 200cc jumps with each new hominin species.


dhw: And you cannot see any logic in the proposal that each expansion occurred (using a mechanism which your God may have designed for both complexification and expansion) to serve a specific purpose at the time, e.g. to create new tools, to cope with a new environment, to exploit a new discovery.

DAVID: This is a non-answer to 'why so big so early'. Each expansion allows complexification in my theory and is not at issue. Only over-expansion is at issue.

dhw: I do not accept your theory of “overexpansion” for pre-sapiens or for sapiens. In my theory, each expansion sufficed for the needs of its time, and each new expansion then met new requirements. “Why so big so early” is only an issue because two days ago you regarded the major changes in lifestyle as tiny advances. It is not an issue if you now accept that there were major advances of some kind (lifestyle is your choice) which required additional brain capacity.

I don't accept your theory as it doesn't fit the human story over 315.00 years.


DAVID: I don't dislike Darwin. but what his blind followers have done to his theory.

dhw: On the subject of survival, you wrote: “Using Darwin and his theory of constant struggle to survive, why any stasis in anything?....Stasis is very disturbing to his theory which you rely upon.” You simply refuse to acknowledge that stasis occurs when the species survives without any new requirements (such as implementing new ideas, exploiting new discoveries, adapting to new conditions etc.). And you simply refuse to acknowledge that all of these are directly geared to “the struggle to survive”.

Your usual non-recognition of our brain, 315,000 years old, final being used to its full capacity in the past 10,000 years. You talk around stasis but description of it doesn't really give an answer to it, except as an organ given by God for future use.


SURVIVAL
dhw: Some of us would say that the motive for doing something is a driving force.

DAVID: Yes, those who do not recognize God would adopt that position.

dhw: According to your theory of evolution, your God was “driven” by one purpose: to design H. sapiens. For some reason which you can’t explain, he was “driven” to directly design millions of life forms etc. that had no connection with humans in order to fulfil the purpose that “drove” him into creating life, which was to create H. sapiens. If you want to play word games, we can carry on. But please don’t pretend that a purpose is not a driving force, whether the term applies to humans or to your God.

DAVID: My God is never driven but extremely thoughtful and purposeful in the goals He sees as proper and worthwhile. Again you distort: I have no idea as to why God chose to evolve us, but that is what He did. You give lip-service to our specialness, and then denigrate its philosophical/theological import.

dhw: Is a purpose a driving force or isn’t it?

What is your point? I will agree once God has developed His purposes He pursues them with no hesitation. Does He feel 'driven'? I have no idea. What is your guess?

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, March 23, 2021, 11:30 (1339 days ago) @ David Turell

dhw: You can see no sign of any advance from the earliest tree-dwelling ancestor to the earliest homo sapiens. [David's bold]

DAVID: The bold is a total distortion of my views. From before Lucy to latter erectus there were major changes in physiology, anatomy, and lifestyle.[dhw’s bold]

dhw: Last week you were telling us: “My point is the tiny advances among early hominins did not require massive brain use.” “There is no reason for an oversized brain to cover minor new adaptations, based on adaptations we see today.”....“You are left with natural speciation which doesn’t explain the new massive enlargement for small developments in lifestyle.” Now apparently there were major changes in lifestyle. Please make up your mind. [dhw’s bold]

DAVID: You are ignoring the many small steps that led to major changes: Lucy's brain was 400 cc. The growth was on the average 200cc each time until at erectus (1,200 cc) we have stone weapons, hide clothing, fire, cave dwelling, but remember, even the first sapiens (1,350 cc) lived very little differently than erectus. Now brain size growth is finished, shrunk a little and the use of this brain is huge.

Why are you telling me what I have already told you? You have left out the whole paragraph in which I pointed out that it was not the lifestyle (based on the struggle for survival) that changed – though you said there were major changes - but the methods that improved chances of survival. So now you’ve itemized some of the methods, every one of which was major enough to require additional brain capacity. Or do you think the first apes that descended from trees were capable of making stone weapons and hide clothing, and using fire?

dhw: Hence my point that the hunter with a new weapon was still a hunter. But I’m not going to complain if you now believe that last week’s tiny advances were in fact major changes. That lies at the heart of my theory.

DAVID: And for me it doesn't prove the need for 200cc jumps with each new hominin species.

I suggest that since each jump was accompanied by major changes which you once called tiny changes, there is a causal connection. But no, it’s not proven. Your good old get-out expression. If it was proven, it would no longer be a theory but a fact, and we wouldn’t be having these discussions.

DAVID: I don't accept your theory as it doesn't fit the human story over 315.00 years.

And so you try to dodge the implications of the major changes which you once called tiny. Of course my theory fits the story, although nobody knows the exact cause of each expansion. After ours – to meet some unknown requirement – there were no new requirements until 300,000 years had passed – peanuts in the 2-3-million-year history of hominins and homos. Then the next new requirements were met by complexification. What doesn’t fit?

DAVID: I don't dislike Darwin. but what his blind followers have done to his theory.

dhw: On the subject of survival, you wrote: “Using Darwin and his theory of constant struggle to survive, why any stasis in anything?....Stasis is very disturbing to his theory which you rely upon.” You simply refuse to acknowledge that stasis occurs when the species survives without any new requirements (such as implementing new ideas, exploiting new discoveries, adapting to new conditions etc.). And you simply refuse to acknowledge that all of these are directly geared to “the struggle to survive”.

DAVID: Your usual non-recognition of our brain, 315,000 years old, final being used to its full capacity in the past 10,000 years. You talk around stasis but description of it doesn't really give an answer to it, except as an organ given by God for future use.

The above is not a description of stasis but an explanation (there were no new requirements), and as usual you try to ignore it, just as you refuse to recognize that instead of the brain expanding 10,000 years ago to meet new requirements (I suggest that further expansion would have required major changes to the anatomy), it complexified. What is your objection? See below for survival.

How plasticity mjght work
DAVID: As new brain areas respond to demands from use, excitatory and inhibitory balance has to be maintained.

I am pleased to note that you now have new brain areas RESPONDING to demands from use. I don’t know why you think your God had to create new brain areas in the past in anticipation of demands from use.

SURVIVAL
dhw: Some of us would say that the motive for doing something is a driving force. […]

DAVID: What is your point? I will agree once God has developed His purposes He pursues them with no hesitation. Does He feel 'driven'? I have no idea. What is your guess?

This discussion began with your attempt to belittle Darwin’s theory concerning the “constant struggle to survive”. My “guess” is that if, as you say, your God designed all the innovations in order to improve organisms’ chances of survival, it is fair enough to argue, as Darwin does, that survival is the purpose of all the innovations. We do not need to use the term “driving force” at all, and the only reason why we are having this discussion is your obsessive opposition to Darwin, apart from his theory of common descent.

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, March 23, 2021, 17:31 (1339 days ago) @ dhw

DAVID: You are ignoring the many small steps that led to major changes: Lucy's brain was 400 cc. The growth was on the average 200cc each time until at erectus (1,200 cc) we have stone weapons, hide clothing, fire, cave dwelling, but remember, even the first sapiens (1,350 cc) lived very little differently than erectus. Now brain size growth is finished, shrunk a little and the use of this brain is huge.

dhw: Why are you telling me what I have already told you? You have left out the whole paragraph in which I pointed out that it was not the lifestyle (based on the struggle for survival) that changed – though you said there were major changes - but the methods that improved chances of survival. So now you’ve itemized some of the methods, every one of which was major enough to require additional brain capacity. Or do you think the first apes that descended from trees were capable of making stone weapons and hide clothing, and using fire?

You still cannot explain the stasis issue. New artifacts always follow brain enlargements. God enlarges in anticipation of use based on the allegorical point: the first sapiens 'all dressed up and no where to go'. Simple, giant brain arrives before it is fully used 300,00 years later. My view remains unchanged despite your attempts to magnify early advances.


dhw: I suggest that since each jump was accompanied by major changes which you once called tiny changes, there is a causal connection. But no, it’s not proven. Your good old get-out expression. If it was proven, it would no longer be a theory but a fact, and we wouldn’t be having these discussions.

Your major is my minor. I admit considering the low level of living style, finally wearing hides is a big deal even though not much of a brain straining issue.


DAVID: Your usual non-recognition of our brain, 315,000 years old, final being used to its full capacity in the past 10,000 years. You talk around stasis but description of it doesn't really give an answer to it, except as an organ given by God for future use.

dhw: The above is not a description of stasis but an explanation (there were no new requirements), and as usual you try to ignore it, just as you refuse to recognize that instead of the brain expanding 10,000 years ago to meet new requirements (I suggest that further expansion would have required major changes to the anatomy), it complexified. What is your objection?

The bold is your problem. The major uses (problem solving) appeared 300,000 years later. God enlarged the brain in anticipation. You have no answer except to deny God.


How plasticity mjght work
DAVID: As new brain areas respond to demands from use, excitatory and inhibitory balance has to be maintained.

dhw: I am pleased to note that you now have new brain areas RESPONDING to demands from use. I don’t know why you think your God had to create new brain areas in the past in anticipation of demands from use.

That is exactly my point. When needed the areas were there, ready to respond.


SURVIVAL
dhw: Some of us would say that the motive for doing something is a driving force. […]

DAVID: What is your point? I will agree once God has developed His purposes He pursues them with no hesitation. Does He feel 'driven'? I have no idea. What is your guess?

dhw: This discussion began with your attempt to belittle Darwin’s theory concerning the “constant struggle to survive”. My “guess” is that if, as you say, your God designed all the innovations in order to improve organisms’ chances of survival, it is fair enough to argue, as Darwin does, that survival is the purpose of all the innovations. We do not need to use the term “driving force” at all, and the only reason why we are having this discussion is your obsessive opposition to Darwin, apart from his theory of common descent.

Survival of the fittest is a weak approach, a nice logical supposition.

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, March 24, 2021, 08:48 (1339 days ago) @ David Turell

DAVID: You are ignoring the many small steps that led to major changes: Lucy's brain was 400 cc. The growth was on the average 200cc each time until at erectus (1,200 cc) we have stone weapons, hide clothing, fire, cave dwelling, but remember, even the first sapiens (1,350 cc) lived very little differently than erectus. Now brain size growth is finished, shrunk a little and the use of this brain is huge.

dhw: Why are you telling me what I have already told you? You have left out the whole paragraph in which I pointed out that it was not the lifestyle (based on the struggle for survival) that changed – though you said there were major changes - but the methods that improved chances of survival. So now you’ve itemized some of the methods, every one of which was major enough to require additional brain capacity. Or do you think the first apes that descended from trees were capable of making stone weapons and hide clothing, and using fire?

DAVID: You still cannot explain the stasis issue. New artifacts always follow brain enlargements.

I am proposing that the brain enlarges through the process of producing the new artefacts. Just as the modern brain complexifies through the process of learning new skills. That has nothing to do with stasis, which is simply the period when there are no new requirements.

DAVID: God enlarges in anticipation of use based on the allegorical point: the first sapiens 'all dressed up and no where to go'. Simple, giant brain arrives before it is fully used 300,00 years later. My view remains unchanged despite your attempts to magnify early advances.
And:
DAVID: Your major is my minor. I admit considering the low level of living style, finally wearing hides is a big deal even though not much of a brain straining issue.

You wrote that between Lucy and erectus there were “major changes in lifestyle”. I pointed out that it was not the lifestyle (always based on survival) but the ways of improving chances of survival that provided the major advances, and you kindly provided us with a list of examples: weapons, clothing, use of fire etc. Yes, these were all major advances despite your attempts now to minimise them. If you claim that your God expanded the brain before early humans came up with their new inventions, at least you have given a reason for the expansion, but at the same time you are agreeing that the new inventions required brain expansion! And we know from the modern brain that it changes in response to needs and not in anticipation of them. But since you are now trying once more to minimise the importance of new artefacts etc., please tell us what changes you were thinking of when you said that there had been “major changes in lifestyle” if you were not referring to the above list.

DAVID: Your usual non-recognition of our brain, 315,000 years old, final being used to its full capacity in the past 10,000 years. You talk around stasis but description of it doesn't really give an answer to it, except as an organ given by God for future use.

dhw: The above is not a description of stasis but an explanation (there were no new requirements), and as usual you try to ignore it, just as you refuse to recognize that instead of the brain expanding 10,000 years ago to meet new requirements (I suggest that further expansion would have required major changes to the anatomy), it complexified. What is your objection?

DAVID: The bold is your problem. The major uses (problem solving) appeared 300,000 years later. God enlarged the brain in anticipation. You have no answer except to deny God.

I suspect that most of the early major advances provided solutions to problems (how to kill at a distance, how to keep warm), but in any case why do you regard problem solving as a major use, but use of fire, new tools and weapons, warm clothing (plus the skill to make it) as minor? And again, please tell us what major changes in early human lifestyles you were thinking of. And why do you reject “no new requirements” as the cause of stasis? And finally, at no time have I denied the possible existence of God.

SURVIVAL
dhw: This discussion began with your attempt to belittle Darwin’s theory concerning the “constant struggle to survive”. My “guess” is that if, as you say, your God designed all the innovations in order to improve organisms’ chances of survival, it is fair enough to argue, as Darwin does, that survival is the purpose of all the innovations. We do not need to use the term “driving force” at all, and the only reason why we are having this discussion is your obsessive opposition to Darwin, apart from his theory of common descent.

DAVID: Survival of the fittest is a weak approach, a nice logical supposition.

Why do you think a logical supposition is a weak approach? Do you or do you not agree that the purpose of evolutionary adaptation and innovation – whether designed by your God or not – is to improve organisms’ chances of survival?

Evolution: more genomic evidence of pre-planning

by David Turell @, Wednesday, March 24, 2021, 17:08 (1338 days ago) @ dhw

DAVID: You still cannot explain the stasis issue. New artifacts always follow brain enlargements.

dhw: I am proposing that the brain enlarges through the process of producing the new artefacts. Just as the modern brain complexifies through the process of learning new skills. That has nothing to do with stasis, which is simply the period when there are no new requirements.

For sapiens the stasis period was +/-300,000 years. God's enlargement in anticipation of use is a much more obvious explanation.


DAVID: God enlarges in anticipation of use based on the allegorical point: the first sapiens 'all dressed up and no where to go'. Simple, giant brain arrives before it is fully used 300,00 years later. My view remains unchanged despite your attempts to magnify early advances.
And:
DAVID: Your major is my minor. I admit considering the low level of living style, finally wearing hides is a big deal even though not much of a brain straining issue.

dhw: You wrote that between Lucy and erectus there were “major changes in lifestyle”. I pointed out that it was not the lifestyle (always based on survival) but the ways of improving chances of survival that provided the major advances, and you kindly provided us with a list of examples: weapons, clothing, use of fire etc. Yes, these were all major advances despite your attempts now to minimise them. If you claim that your God expanded the brain before early humans came up with their new inventions, at least you have given a reason for the expansion, but at the same time you are agreeing that the new inventions required brain expansion! And we know from the modern brain that it changes in response to needs and not in anticipation of them. But since you are now trying once more to minimise the importance of new artefacts etc., please tell us what changes you were thinking of when you said that there had been “major changes in lifestyle” if you were not referring to the above list.

They were major advances for the time, but did not require much use of the brain, compared to how we use our brain now. Why does 200 cc from erectus to sapiens make such a difference? The time to learn to use the available brain with a much more sophisticated pre-frontal area..


DAVID: Your usual non-recognition of our brain, 315,000 years old, final being used to its full capacity in the past 10,000 years. You talk around stasis but description of it doesn't really give an answer to it, except as an organ given by God for future use.

dhw: The above is not a description of stasis but an explanation (there were no new requirements), and as usual you try to ignore it, just as you refuse to recognize that instead of the brain expanding 10,000 years ago to meet new requirements (I suggest that further expansion would have required major changes to the anatomy), it complexified. What is your objection?

DAVID: The bold is your problem. The major uses (problem solving) appeared 300,000 years later. God enlarged the brain in anticipation. You have no answer except to deny God.

dhw: I suspect that most of the early major advances provided solutions to problems (how to kill at a distance, how to keep warm), but in any case why do you regard problem solving as a major use, but use of fire, new tools and weapons, warm clothing (plus the skill to make it) as minor? And again, please tell us what major changes in early human lifestyles you were thinking of. And why do you reject “no new requirements” as the cause of stasis? And finally, at no time have I denied the possible existence of God.

For me it is still an enlargement in anticipation of future use.


SURVIVAL
dhw: This discussion began with your attempt to belittle Darwin’s theory concerning the “constant struggle to survive”. My “guess” is that if, as you say, your God designed all the innovations in order to improve organisms’ chances of survival, it is fair enough to argue, as Darwin does, that survival is the purpose of all the innovations. We do not need to use the term “driving force” at all, and the only reason why we are having this discussion is your obsessive opposition to Darwin, apart from his theory of common descent.

DAVID: Survival of the fittest is a weak approach, a nice logical supposition.

dhw: Why do you think a logical supposition is a weak approach? Do you or do you not agree that the purpose of evolutionary adaptation and innovation – whether designed by your God or not – is to improve organisms’ chances of survival?

That does not explain the advance of humans beyond apes/monkeys. Those primates survived without any problems until the past 100 years when we began to overrun them. All we have gotten from our brains in a much better lifestyle, since survival was no issue. Please answer that issue.

Evolution: more genomic evidence of pre-planning

by dhw, Thursday, March 25, 2021, 12:12 (1337 days ago) @ David Turell

DAVID: You still cannot explain the stasis issue. New artifacts always follow brain enlargements.

dhw: I am proposing that the brain enlarges through the process of producing the new artefacts. Just as the modern brain complexifies through the process of learning new skills. That has nothing to do with stasis, which is simply the period when there are no new requirements.

DAVID: For sapiens the stasis period was +/-300,000 years. God's enlargement in anticipation of use is a much more obvious explanation.

Why are you repeating this instead of dealing with the point at issue? We know for a fact that brains change IN RESPONSE to new requirements. Why, then, is it obvious that your God changed homo brains before they were able to make the new artefacts?

dhw: […] since you are now trying once more to minimise the importance of new artefacts etc., please tell us what changes you were thinking of when you said that there had been “major changes in lifestyle” if you were not referring to the above list [i.e. weapons. clothing, use of fire etc.].

DAVID: They were major advances for the time, but did not require much use of the brain, compared to how we use our brain now.

Why are you making this comparison? If they were major advances at the time, and the brain was so much smaller at the time, it is perfectly logical that the major advances would have required a greater capacity. Why do you mention the artefacts at all if there is no connection with the expansion? If your God exists, then either he decided in advance that the brain required more cells in order to produce what was then a major advance, or he had designed a mechanism enabling the brain cells to do their own expanding, just as you believe he set up a mechanism for them to do their own complexifying. Either way, we now at last have your agreement that major advances required brain expansion, as opposed to your earlier claim that the advances were too tiny.

DAVID: Why does 200 cc from erectus to sapiens make such a difference? The time to learn to use the available brain with a much more sophisticated pre-frontal area.

You keep trying to limit attention to sapiens. The process was ongoing: each major advance required expansion, which was always followed by stasis until there were new requirements. The same applies to sapiens. But instead of our post-stasis new ideas generating additional cells (probably because that would have entailed major changes to the anatomy), enhanced complexification took over from expansion – and its efficiency resulted in a degree of shrinkage. You still haven’t provided one single reason for rejecting this hypothesis.

SURVIVAL
dhw: […] We do not need to use the term “driving force” at all, and the only reason why we are having this discussion is your obsessive opposition to Darwin, apart from his theory of common descent.

DAVID: Survival of the fittest is a weak approach, a nice logical supposition.

dhw: Why do you think a logical supposition is a weak approach? Do you or do you not agree that the purpose of evolutionary adaptation and innovation – whether designed by your God or not – is to improve organisms’ chances of survival?

DAVID: That does not explain the advance of humans beyond apes/monkeys. Those primates survived without any problems until the past 100 years when we began to overrun them. All we have gotten from our brains in a much better lifestyle, since survival was no issue. Please answer that issue.

You launched your usual attack on Darwin, and now when I ask a straightforward question in defence of his theory that evolutionary adaptation and innovation is motivated by the effort to improve chances of survival, you skip to the uniqueness of sapiens. Sapiens has not changed into another species! This is a totally different subject. You said yourself that there was no change in lifestyle between erectus and early sapiens, so initially survival would have been the reason for the final expansion. As for the breakaway from apes, I keep proposing (and you keep forgetting) that it may have occurred when local conditions made it necessary or advisable for a group to descend from the trees. Other apes didn’t need to – they were surviving perfectly well, and have continued to do so. Subsequent species of hominins and homos went their own way, meeting new needs which required additional brain capacity etc. etc. Now please tell us whether the adaptations and innovations that caused speciation did or did not serve the purpose of improving organisms’ chances of survival.

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, March 25, 2021, 17:17 (1337 days ago) @ dhw

DAVID: For sapiens the stasis period was +/-300,000 years. God's enlargement in anticipation of use is a much more obvious explanation.

dhw: Why are you repeating this instead of dealing with the point at issue? We know for a fact that brains change IN RESPONSE to new requirements. Why, then, is it obvious that your God changed homo brains before they were able to make the new artefacts?

The best explanation is the huge brain did little new when it appeared, therefore it appeared in anticipation of use later use. Remember I believe God speciates.


dhw: […] since you are now trying once more to minimise the importance of new artefacts etc., please tell us what changes you were thinking of when you said that there had been “major changes in lifestyle” if you were not referring to the above list [i.e. weapons. clothing, use of fire etc.].

DAVID: They were major advances for the time, but did not require much use of the brain, compared to how we use our brain now.

dhw: Why are you making this comparison? If they were major advances at the time, and the brain was so much smaller at the time, it is perfectly logical that the major advances would have required a greater capacity.

But a 200 cc advance is way beyond current needs then.

dhw: Why do you mention the artefacts at all if there is no connection with the expansion? If your God exists, then either he decided in advance that the brain required more cells in order to produce what was then a major advance, or he had designed a mechanism enabling the brain cells to do their own expanding, just as you believe he set up a mechanism for them to do their own complexifying.

You keep forgetting the human brain shrank 150 cc while complexifing. My thought is past brains could complexify, but didn't shrink since there overall capacity was small.

DAVID: Why does 200 cc from erectus to sapiens make such a difference? The time to learn to use the available brain with a much more sophisticated pre-frontal area.

dhw: You keep trying to limit attention to sapiens.

It is the only brain we can study. The rest is pure theory.

dhw: But instead of our post-stasis new ideas generating additional cells (probably because that would have entailed major changes to the anatomy), enhanced complexification took over from expansion – and its efficiency resulted in a degree of shrinkage.

The shrinkage doesn't help your theory.


SURVIVAL

dhw: Do you or do you not agree that the purpose of evolutionary adaptation and innovation – whether designed by your God or not – is to improve organisms’ chances of survival?

DAVID: That does not explain the advance of humans beyond apes/monkeys. Those primates survived without any problems until the past 100 years when we began to overrun them. All we have gotten from our brains in a much better lifestyle, since survival was no issue. Please answer that issue.

dhw: You launched your usual attack on Darwin,.... Sapiens has not changed into another species! This is a totally different subject. You said yourself that there was no change in lifestyle between erectus and early sapiens, so initially survival would have been the reason for the final expansion.

My attack is on the bastardization of his solid theory which is only common descent. As for the expansion, it was way beyond need for survival, my point always.

dhw: As for the breakaway from apes, I keep proposing (and you keep forgetting) that it may have occurred when local conditions made it necessary or advisable for a group to descend from the trees. Other apes didn’t need to – they were surviving perfectly well, and have continued to do so. Subsequent species of hominins and homos went their own way, meeting new needs which required additional brain capacity etc. etc. Now please tell us whether the adaptations and innovations that caused speciation did or did not serve the purpose of improving organisms’ chances of survival.

Our current abilities are far beyond the needs for living a life totally in natural wilderness as erectus and early sapiens did, housing themselves in caves and wearing skins. The brain from 315,000 years ago allowed that. God speciates.

Evolution: more genomic evidence of pre-planning

by dhw, Friday, March 26, 2021, 12:37 (1336 days ago) @ David Turell

DAVID: For sapiens the stasis period was +/-300,000 years. God's enlargement in anticipation of use is a much more obvious explanation.

dhw: Why are you repeating this instead of dealing with the point at issue? We know for a fact that brains change IN RESPONSE to new requirements. Why, then, is it obvious that your God changed homo brains before they were able to make the new artefacts?

DAVID: The best explanation is the huge brain did little new when it appeared, therefore it appeared in anticipation of use later use. Remember I believe God speciates.

Erectus’s brain expanded from approx 900cc to approx. 1200cc, and sapiens expanded to 1350cc. Sapiens’ brain did not suddenly become huge – it ended a long series of expansions, each of which I propose was brought about by new requirements and was followed by stasis (= doing little new) until the next new requirement which necessitated a new expansion. This includes the sapiens expansion, but in our case complexification took over from expansion. Please explain why it is “obvious” that this is all wrong and God must have expanded each successive brain for no immediate reason.

dhw: If they were major advances at the time, and the brain was so much smaller at the time, it is perfectly logical that the major advances would have required a greater capacity.

DAVID: But a 200 cc advance is way beyond current needs then.

How do you know?

dhw: Why do you mention the artefacts at all if there is no connection with the expansion? If your God exists, then either he decided in advance that the brain required more cells in order to produce what was then a major advance, or he had designed a mechanism enabling the brain cells to do their own expanding, just as you believe he set up a mechanism for them to do their own complexifying.

DAVID: You keep forgetting the human brain shrank 150 cc while complexifing. My thought is past brains could complexify, but didn't shrink since there overall capacity was small.

This has nothing to do with the point I have just raised! Why are you dodging the connection between expansion and artefacts? As for shrinkage, I already answered:

dhw: But instead of our post-stasis new ideas generating additional cells (probably because that would have entailed major changes to the anatomy), enhanced complexification took over from expansion – and its efficiency resulted in a degree of shrinkage.

DAVID: The shrinkage doesn't help your theory.

My theory doesn’t need help from shrinkage. It only requires an explanation which I have given you and which you have ignored. I agree that past brains would also have complexified and didn’t shrink because their capacity was small. Hence the logical deduction that when there were new requirements (e.g. making new artefacts) which their complexification could not cope with, expansion became necessary. Thank you for supporting my theory.

DAVID: Why does 200 cc from erectus to sapiens make such a difference? The time to learn to use the available brain with a much more sophisticated pre-frontal area.

dhw: You keep trying to limit attention to sapiens.

DAVID: It is the only brain we can study. [...] .

And since the only brain we can study shows that the brain changes IN RESPONSE to new requirements (though one section has expanded), I would suggest that the only brain we can study offers more support to my theory than to yours. And it is NOT the 200 cc that makes the difference, but the enhanced ability to complexify. 300,000 years later, some of the cells could even be jettisoned! You say in the next exchange, there was no initial change in lifestyle!

SURVIVAL
dhw: You launched your usual attack on Darwin,.... You said yourself that there was no change in lifestyle between erectus and early sapiens, so initially survival would have been the reason for the final expansion.

DAVID:: My attack is on the bastardization of his solid theory which is only common descent.

No it isn’t. You attacked his theory that the purpose of evolutionary adaptations/innovations was to improve chances of survival, but you consider that to be a “weak approach”.

DAVID: As for the expansion, it was way beyond need for survival, my point always.

And yet you agree that all expansions have coincided with major advances such as new tools and weapons, clothes, use of fire etc. […] I agree that modern sapiens has created requirements that are not directly geared to survival. That doesn't mean all expansions were not geared to survival – as illustrated by your next observation:

DAVID: Our current abilities are far beyond the needs for living a life totally in natural wilderness as erectus and early sapiens did, housing themselves in caves and wearing skins. The brain from 315,000 years ago allowed that.

Exactly. The final expansion proved adequate for all the requirements for survival. And when, 300,000 years after that final expansion, there were new requirements – whether connected with improved chances of survival or with other matters – the brain could not expand any further without creating problems for the anatomy (my proposal), and so enhanced complexification took over as the means of meeting them, as we know from research into “the only brain we can study”. You keep supporting my theory in your efforts to oppose it!

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, March 26, 2021, 14:42 (1336 days ago) @ dhw

DAVID: The best explanation is the huge brain did little new when it appeared, therefore it appeared in anticipation of use later use. Remember I believe God speciates.

dhw: Erectus’s brain expanded from approx 900cc to approx. 1200cc, and sapiens expanded to 1350cc. Sapiens’ brain did not suddenly become huge – it ended a long series of expansions, each of which I propose was brought about by new requirements and was followed by stasis (= doing little new) until the next new requirement which necessitated a new expansion. This includes the sapiens expansion, but in our case complexification took over from expansion. Please explain why it is “obvious” that this is all wrong and God must have expanded each successive brain for no immediate reason.

You never explain stasis, which I see as a consequence of a brain appearing which is too large for current needs, and is the actual history of what happened. God speciates in anticipation of future use.


dhw: But instead of our post-stasis new ideas generating additional cells (probably because that would have entailed major changes to the anatomy), enhanced complexification took over from expansion – and its efficiency resulted in a degree of shrinkage.

DAVID: The shrinkage doesn't help your theory.

dhw: My theory doesn’t need help from shrinkage. It only requires an explanation which I have given you and which you have ignored.

I don't ignore it, as your description of stasis doesn't explain that it must occur.

dhw: You keep trying to limit attention to sapiens.

DAVID: It is the only brain we can study. [...] .

dhw: And since the only brain we can study shows that the brain changes IN RESPONSE to new requirements (though one section has expanded), I would suggest that the only brain we can study offers more support to my theory than to yours. And it is NOT the 200 cc that makes the difference, but the enhanced ability to complexify. 300,000 years later, some of the cells could even be jettisoned! You say in the next exchange, there was no initial change in lifestyle!

Which means stasis after huge enlargement.


SURVIVAL
dhw: You launched your usual attack on Darwin,.... You said yourself that there was no change in lifestyle between erectus and early sapiens, so initially survival would have been the reason for the final expansion.

DAVID:: My attack is on the bastardization of his solid theory which is only common descent.

dhw: No it isn’t. You attacked his theory that the purpose of evolutionary adaptations/innovations was to improve chances of survival, but you consider that to be a “weak approach”.

DAVID: As for the expansion, it was way beyond need for survival, my point always.

dhw: And yet you agree that all expansions have coincided with major advances such as new tools and weapons, clothes, use of fire etc. […] I agree that modern sapiens has created requirements that are not directly geared to survival. That doesn't mean all expansions were not geared to survival – as illustrated by your next observation:

DAVID: Our current abilities are far beyond the needs for living a life totally in natural wilderness as erectus and early sapiens did, housing themselves in caves and wearing skins. The brain from 315,000 years ago allowed that.

dhw: Exactly. The final expansion proved adequate for all the requirements for survival. And when, 300,000 years after that final expansion, there were new requirements – whether connected with improved chances of survival or with other matters – the brain could not expand any further without creating problems for the anatomy (my proposal), and so enhanced complexification took over as the means of meeting them, as we know from research into “the only brain we can study”. You keep supporting my theory in your efforts to oppose it!

Just the opposite. Humans had to learn to use the overexpansion and the stasis period demonstrates the time it took

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, March 27, 2021, 11:35 (1335 days ago) @ David Turell

DAVID: You never explain stasis, which I see as a consequence of a brain appearing which is too large for current needs, and is the actual history of what happened. God speciates in anticipation of future use.
The above was your reply to my theoretical explanation of stasis, which I shall now repeat for the umpteenth time. But first, why on earth would an overlarge brain result in stasis? And no, a brain too large for current needs is NOT the actual history of what happened. That is your theory. The sapiens’ brain expanded from 1200cc erectus to 1350cc, just as all earlier brains expanded by similar amounts. There are various possible causes, such as new tools or weapons, clothes, new environments to cope with, new discoveries, use of fire etc. Once each brain (including sapiens) had expanded by meeting the new requirement, it did not need to expand any more (complexification could cope) until there was another new requirement which exceeded its existing capacity. (Explanation of stasis.) It was never too large. The sapiens brain was never too large either. It was adequate for all sapiens’ needs for 300,000 years. But then – again we don’t know why – new requirements arose, but as further expansion would have required major anatomical changes, enhanced complexification took over. And it proved so efficient that some of the existing cells were no longer required – hence shrinkage. You have never offered one single reason for rejecting this hypothesis, but merely go on repeating your own beliefs as if they were “the actual history of what happened”. I do not ask you to believe my theory. I only ask you to provide one logical reason for rejecting it.

DAVID: The shrinkage doesn't help your theory.

dhw: My theory doesn’t need help from shrinkage. It only requires an explanation which I have given you and which you have ignored.

DAVID: I don't ignore it, as your description of stasis doesn't explain that it must occur.

I have never said it MUST occur. I have explained why it DID occur, and you have not provided one single reason for rejecting my explanation.

dhw: You keep trying to limit attention to sapiens.

DAVID: It is the only brain we can study. [...] .

dhw: And since the only brain we can study shows that the brain changes IN RESPONSE to new requirements (though one section has expanded), I would suggest that the only brain we can study offers more support to my theory than to yours. And it is NOT the 200 cc that makes the difference, but the enhanced ability to complexify. 300,000 years later, some of the cells could even be jettisoned! You say in the next exchange, there was no initial change in lifestyle!

DAVID: Which means stasis after huge enlargement.

How huge is huge? Our enlargement was no “huger” than preceding enlargements, stasis occurred after every enlargement (as explained above), and how does this comment invalidate the point that the only brain we can study shows that the brain changes IN RESPONSE to new requirements and not in anticipation of them?

SURVIVAL
dhw: You launched your usual attack on Darwin,....

DAVID:: My attack is on the bastardization of his solid theory which is only common descent.

dhw: No it isn’t. You attacked his theory that the purpose of evolutionary adaptations/innovations was to improve chances of survival, but you consider that to be a “weak approach”. […]

DAVID: […] Our current abilities are far beyond the needs for living a life totally in natural wilderness as erectus and early sapiens did, housing themselves in caves and wearing skins. The brain from 315,000 years ago allowed that.

dhw: Exactly. The final expansion proved adequate for all the requirements for survival….

Your switch to sapiens enabled you to change the subject from your refusal to accept Darwin’s theory that the purpose of evolutionary adaptations/innovations was to improve chances of survival. May I take it that you now accept his theory?

dhw: …And when, 300,000 years after that final expansion, there were new requirements – whether connected with improved chances of survival or with other matters – the brain could not expand any further without creating problems for the anatomy (my proposal), and so enhanced complexification took over as the means of meeting them, as we know from research into “the only brain we can study”. You keep supporting my theory in your efforts to oppose it!

DAVID: Just the opposite. Humans had to learn to use the overexpansion and the stasis period demonstrates the time it took.

I propose that there was no overexpansion, and I have no idea how you can learn to use something without producing anything. Stasis means nothing new, and it applied to all stages of expansion, as explained above. I now eagerly await one logical reason for your rejection of my theory – other than the fact that it is the opposite of your theory.

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, March 27, 2021, 15:20 (1335 days ago) @ dhw

DAVID: You never explain stasis, which I see as a consequence of a brain appearing which is too large for current needs, and is the actual history of what happened. God speciates in anticipation of future use.

dhw: The above was your reply to my theoretical explanation of stasis, which I shall now repeat for the umpteenth time. But first, why on earth would an overlarge brain result in stasis? And no, a brain too large for current needs is NOT the actual history of what happened. That is your theory. The sapiens’ brain expanded from 1200cc erectus to 1350cc, just as all earlier brains expanded by similar amounts...The sapiens brain was never too large either. It was adequate for all sapiens’ needs for 300,000 years...You have never offered one single reason for rejecting this hypothesis, but merely go on repeating your own beliefs as if they were “the actual history of what happened”. I only ask you to provide one logical reason for rejecting it.

It all depends upon your theoretical view of 'necessary' stasis. I initially raised the concept of stasis as evolution developing a brain much to big for the current requirements. To me that is the obvious conclusion and a strong position, considering how use of sapiens brain exploded in the past 10,000 years showing its true capacity that was really available 315,000 years ago. You have scrambled around trying to diminish the point, but all you have done is describe stasis, a non-answer to my point.


DAVID: Which means stasis after huge enlargement.

dhw: How huge is huge? Our enlargement was no “huger” than preceding enlargements, stasis occurred after every enlargement (as explained above), and how does this comment invalidate the point that the only brain we can study shows that the brain changes IN RESPONSE to new requirements and not in anticipation of them?

Again you present a simple review of brain history. It is a matter of interpretation of stasis and if you even slightly try to acknowledge my point, God suddenly appears as design agent, and you can't go there


SURVIVAL

dhw: …And when, 300,000 years after that final expansion, there were new requirements – whether connected with improved chances of survival or with other matters – the brain could not expand any further without creating problems for the anatomy (my proposal), and so enhanced complexification took over as the means of meeting them, as we know from research into “the only brain we can study”. You keep supporting my theory in your efforts to oppose it!

DAVID: Just the opposite. Humans had to learn to use the overexpansion and the stasis period demonstrates the time it took.

dhw: I propose that there was no overexpansion, and I have no idea how you can learn to use something without producing anything. Stasis means nothing new, and it applied to all stages of expansion, as explained above. I now eagerly await one logical reason for your rejection of my theory – other than the fact that it is the opposite of your theory.

All discussed above: "Again you present a simple review of brain history. It is a matter of interpretation of stasis and if you even slightly try to acknowledge my point, God suddenly appears as design agent, and you can't go there."

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, March 28, 2021, 08:46 (1335 days ago) @ David Turell

DAVID: You never explain stasis, which I see as a consequence of a brain appearing which is too large for current needs, and is the actual history of what happened. God speciates in anticipation of future use.

dhw: The above was your reply to my theoretical explanation of stasis, which I shall now repeat for the umpteenth time. But first, why on earth would an overlarge brain result in stasis? And no, a brain too large for current needs is NOT the actual history of what happened. That is your theory. The sapiens’ brain expanded from 1200cc erectus to 1350cc, just as all earlier brains expanded by similar amounts..Once each brain (including sapiens) had expanded by meeting the new requirement, it did not need to expand any more (complexification could cope) until there was another new requirement which exceeded its existing capacity.(Explanation of stasis.) It was never too large. The sapiens brain was never too large either. It was adequate for all sapiens’ needs for 300,000 years...You have never offered one single reason for rejecting this hypothesis, but merely go on repeating your own beliefs as if they were “the actual history of what happened”. I only ask you to provide one logical reason for rejecting it.

DAVID: It all depends upon your theoretical view of 'necessary' stasis.

There is no “necessity” for stasis. It is the consequence of there being no new requirements.

DAVID: I initially raised the concept of stasis as evolution developing a brain much to big for the current requirements.

And I keep proposing to you that the brain was never TOO big for current requirements. Only when it was unable to meet new requirements did it expand. But in sapiens’ case, it could not expand any further, and so it enhanced its ability to complexify, and this was so efficient that it made certain cells redundant = shrinkage. It was NOT too big for 300,000 years. If you think shrinkage proves your case, please explain why your God designed all the extra cells and gave sapiens 300,000 years to learn to use them before jettisoning them as redundant.

DAVID: To me that is the obvious conclusion and a strong position, considering how use of sapiens brain exploded in the past 10,000 years showing its true capacity that was really available 315,000 years ago. You have scrambled around trying to diminish the point, but all you have done is describe stasis, a non-answer to my point.

Your explanation of stasis has been that sapiens had to spend 300,000 years learning to use his brain but he produced nothing new! My explanation of stasis, yet again, is that after expansion sapiens did not need to produce anything new. In earlier times, expansions were caused by the major innovations you yourself have listed, and these were followed by stasis. Same brain…no new requirements. Only when new requirements exceed the brain’s capacity does it expand. See above for sapiens. There is no scrambling. It is a perfectly straightforward theory, and you have still not offered a single reason for rejecting it.

DAVID: Which means stasis after huge enlargement.

dhw: How huge is huge? Our enlargement was no “huger” than preceding enlargements, stasis occurred after every enlargement (as explained above), and how does this comment invalidate the point that the only brain we can study shows that the brain changes IN RESPONSE to new requirements and not in anticipation of them?

DAVID: Again you present a simple review of brain history. It is a matter of interpretation of stasis and if you even slightly try to acknowledge my point, God suddenly appears as design agent, and you can't go there.

Your point is that your God designed each expansion, including sapiens, in anticipation of requirements that did not yet exist. Of course your theory makes him appear! My point is that just as you believe he designed an autonomous process of complexification – unless you’ve suddenly decided that God also designs all our human designs for us – he could (theistic version) have enabled the SAME autonomous mechanism to produce additional cells when needed. I simply have your designer God going where you don’t want him to go.

I note that under “survival” you have now dropped your objection to Darwin’s theory that the purpose of evolutionary adaptations and innovations was to improve chances of survival. No doubt this will come up again in future posts.

Evolution: more genomic evidence of pre-planning

by David Turell @, Sunday, March 28, 2021, 15:51 (1334 days ago) @ dhw

DAVID: It all depends upon your theoretical view of 'necessary' stasis.

dhw: There is no “necessity” for stasis. It is the consequence of there being no new requirements.

DAVID: I initially raised the concept of stasis as evolution developing a brain much to big for the current requirements.

dhw: And I keep proposing to you that the brain was never TOO big for current requirements. Only when it was unable to meet new requirements did it expand. But in sapiens’ case, it could not expand any further, and so it enhanced its ability to complexify, and this was so efficient that it made certain cells redundant = shrinkage. It was NOT too big for 300,000 years. If you think shrinkage proves your case, please explain why your God designed all the extra cells and gave sapiens 300,000 years to learn to use them before jettisoning them as redundant.

Stasis proves the brain was too big for current requirements, as you point out it took 300,000 years to fully use it. And the import of shrinkage is opposite to your convoluted reasoning. Overall size is not the issue but the ability to reorganize as needed as new uses of a big brain are employed.


DAVID: To me that is the obvious conclusion and a strong position, considering how use of sapiens brain exploded in the past 10,000 years showing its true capacity that was really available 315,000 years ago. You have scrambled around trying to diminish the point, but all you have done is describe stasis, a non-answer to my point.

Your explanation of stasis has been that sapiens had to spend 300,000 years learning to use his brain but he produced nothing new! My explanation of stasis, yet again, is that after expansion sapiens did not need to produce anything new. In earlier times, expansions were caused by the major innovations you yourself have listed, and these were followed by stasis. Same brain…no new requirements. Only when new requirements exceed the brain’s capacity does it expand. See above for sapiens. There is no scrambling. It is a perfectly straightforward theory, and you have still not offered a single reason for rejecting it.

You constant refusal to recognized it was over-expanded for current requirements is an obvious counter interpretation. Of course I am reasonable in not accepting your view.


DAVID: Which means stasis after huge enlargement.

dhw: How huge is huge? Our enlargement was no “huger” than preceding enlargements, stasis occurred after every enlargement (as explained above), and how does this comment invalidate the point that the only brain we can study shows that the brain changes IN RESPONSE to new requirements and not in anticipation of them?

DAVID: Again you present a simple review of brain history. It is a matter of interpretation of stasis and if you even slightly try to acknowledge my point, God suddenly appears as design agent, and you can't go there.

dhw: Your point is that your God designed each expansion, including sapiens, in anticipation of requirements that did not yet exist. Of course your theory makes him appear! My point is that just as you believe he designed an autonomous process of complexification – unless you’ve suddenly decided that God also designs all our human designs for us – he could (theistic version) have enabled the SAME autonomous mechanism to produce additional cells when needed. I simply have your designer God going where you don’t want him to go.

We can each imagine our God as we wish.


dhw: I note that under “survival” you have now dropped your objection to Darwin’s theory that the purpose of evolutionary adaptations and innovations was to improve chances of survival. No doubt this will come up again in future posts.

Of course adaptations improve survival. God gave organisms the ability to make minor adaptations to respond to changing requirements. Darwin saw speciation as a survival mechanism and I see God as the designer of new species.

Evolution: more genomic evidence of pre-planning

by dhw, Monday, March 29, 2021, 13:53 (1333 days ago) @ David Turell

dhw: If you think shrinkage proves your case, please explain why your God designed all the extra cells and gave sapiens 300,000 years to learn to use them before jettisoning them as redundant.

Not answered.

DAVID: Stasis proves the brain was too big for current requirements, as you point out it took 300,000 years to fully use it.

Stasis proves that there were no new requirements or developments, and it is you who insist that the brain was TOO big and it took 300,000 years to “fully use it”. Your next comment supports my theory:

DAVID: And the import of shrinkage is opposite to your convoluted reasoning. Overall size is not the issue but the ability to reorganize as needed as new uses of a big brain are employed.

Correct. Size is not the issue. The initial expansion to sapiens size provided the number of cells needed for EXISTING requirements. Minor new requirements would have been accomplished by complexification, but when there were major new requirements and because the brain could not expand any more, the “issue” became the ability to reorganize (= enhanced complexification). In other words, there were never too many cells, but the existing cells had to respond to new uses by enhanced complexification and not by adding to their number. This process proved so efficient that some cells became redundant (= shrinkage).

dhw: […] the only brain we can study shows that the brain changes IN RESPONSE to new requirements and not in anticipation of them…

As with the first point in this post, not answered. And you have not answered the question of how sapiens “learned to use” his brain for 300,000 years by producing nothing. Instead you digressed to this:

DAVID: ….if you even slightly try to acknowledge my point, God suddenly appears as design agent, and you can't go there.

dhw: My point is that just as you believe he designed an autonomous process of complexification – unless you’ve suddenly decided that God also designs all our human designs for us – he could (theistic version) have enabled the SAME autonomous mechanism to produce additional cells when needed. I simply have your designer God going where you don’t want him to go.

You returned to our subject under “Language learning”, and perhaps the repetitions will eventually lead to you answering my objections to your theory.

DAVID: I assume a degree of complexification occurred […] Let us note this ability was present 315,000 year ago and unused until complex language appeared about 70,000 estimated years ago.

How on earth do you know that an ability was present but was never used? I agree with your assumption. Once the brain had reached its maximum size 315,000 years ago, any further requirements would have resulted in a “degree of complexification”, as is illustrated by the fact that nowadays any new requirement is met by complexification (e.g. the illiterate women learning to read).

DAVID: It is obvious we humans didn't know how to use our very supple brain until we finally tried it out to its full extent. The stasis must be viewed as a required experimental learning period. The shrinkage from complexification obviously means it was oversized from the beginning. All in anticipation of future usage. dhw has never given a reasonable explanation of the oversized beginning to more than match the current needs use at the time of the initial appearance of this sapiens brain.

You have now excluded all former expansions from this discussion! Erectus went from 900cc to 1200 cc, and we upped it to 1350 cc. Each successive species would have used its capacity and its powers of complexification to its fullest extent, matching current needs, and then new requirements required expansion. But as sapiens’ brain could not expand any more, “a degree of complexification occurred”, i.e. the size was adequate, and not excessive. It was the enhanced ability to reorganize that was needed. So your God (if he exists) did not give us too many cells to begin with, but he may well have given all cells (ancient and modern) the autonomous ability to complexify and also to add to their numbers when needed. In sapiens’ case, the improved usage of the complexification mechanism was so great that certain cells became redundant (shrinkage). Now perhaps you will respond to my earlier queries about your own theory.

dhw: I note that under “survival” you have now dropped your objection to Darwin’s theory that the purpose of evolutionary adaptations and innovations was to improve chances of survival. No doubt this will come up again in future posts.

DAVID: Of course adaptations improve survival. God gave organisms the ability to make minor adaptations to respond to changing requirements. Darwin saw speciation as a survival mechanism and I see God as the designer of new species.

There is no contradiction between the two theories. Even if your God designed all the innovations which led to new species, the purpose of those innovations was to improve chances of survival.

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, March 29, 2021, 18:25 (1333 days ago) @ dhw

dhw: If you think shrinkage proves your case, please explain why your God designed all the extra cells and gave sapiens 300,000 years to learn to use them before jettisoning them as redundant.

DAVID: Stasis proves the brain was too big for current requirements, as you point out it took 300,000 years to fully use it.

dhw: Stasis proves that there were no new requirements or developments, and it is you who insist that the brain was TOO big and it took 300,000 years to “fully use it”. Your next comment supports my theory:

This comment doesn't support your backward interpretation atall. DAVID: And the import of shrinkage is opposite to your convoluted reasoning. Overall size is not the issue but the ability to reorganize as needed as new uses of a big brain are employed.

As presented yesterday: "the major point to me is how the brain easily shuttles the information around the different cooperative areas to achieve the necessary result. Let us note this ability was present 315,000 year ago and unused until complex language appeared about 70,000 estimated years ago. It is obvious we humans didn't know how to use our very supple brain until we finally tried it out to its full extent. The stasis must be viewed as a required experimental learning period. The shrinkage from complexification obviously means it was oversized from the beginning. All in anticipation of future usage. dhw has never given a reasonable explanation of the oversized beginning to more than match the current needs use at the time of the initial appearance of this sapiens brain." A answer below:


dhw: Correct. Size is not the issue.... In other words, there were never too many cells, but the existing cells had to respond to new uses by enhanced complexification and not by adding to their number. This process proved so efficient that some cells became redundant (= shrinkage).

Not too many cells? Sapiens brain shrunk 150 cc from complexification.


dhw: […] the only brain we can study shows that the brain changes IN RESPONSE to new requirements and not in anticipation of them…

dhw: As with the first point in this post, not answered. And you have not answered the question of how sapiens “learned to use” his brain for 300,000 years by producing nothing.

It took time, as history shows to learn to use it.


dhw: How on earth do you know that an ability was present but was never used?

Obviously because of the giant usage present now. Original Sapiens lifestyle differed little from erectus while the brain was 200 cc larger.


DAVID: It is obvious we humans didn't know how to use our very supple brain until we finally tried it out to its full extent. The stasis must be viewed as a required experimental learning period. The shrinkage from complexification obviously means it was oversized from the beginning. All in anticipation of future usage. dhw has never given a reasonable explanation of the oversized beginning to more than match the current needs use at the time of the initial appearance of this sapiens brain.

dhw: You have now excluded all former expansions from this discussion!

The only period of our evolution which is best to study is from the knowledge of what our brain tells us.

dhw: In sapiens’ case, the improved usage of the complexification mechanism was so great that certain cells became redundant (shrinkage).

Shrinkage was loss of 1500 cc of neurons and their axons It all comes from the development of complex language so that abstract ideas could be exchanged between people. From that point we learned how to use our oversized brains and complexification shrunk them. You just can't admit our first version of our brain was oversized. I view our first brain was a V-8 engine operating on two cylinders, a concept you try to avoid.

dhw: I note that under “survival” you have now dropped your objection to Darwin’s theory that the purpose of evolutionary adaptations and innovations was to improve chances of survival. No doubt this will come up again in future posts.

DAVID: Of course adaptations improve survival. God gave organisms the ability to make minor adaptations to respond to changing requirements. Darwin saw speciation as a survival mechanism and I see God as the designer of new species.

dhw: There is no contradiction between the two theories. Even if your God designed all the innovations which led to new species, the purpose of those innovations was to improve chances of survival.

Of course without survival evolution and life stop.

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, March 30, 2021, 14:09 (1332 days ago) @ David Turell

dhw: If you think shrinkage proves your case, please explain why your God designed all the extra cells and gave sapiens 300,000 years to learn to use them before jettisoning them as redundant.

DAVID: Stasis proves the brain was too big for current requirements, as you point out it took 300,000 years to fully use it.

dhw: Stasis proves that there were no new requirements or developments, and it is you who insist that the brain was TOO big and it took 300,000 years to “fully use it”. Your next comment supports my theory:

DAVID: […] Overall size is not the issue but the ability to reorganize as needed as new uses of a big brain are employed.

DAVID: This comment doesn't support your backward interpretation at all.

DAVID: As presented yesterday: "the major point to me is how the brain easily shuttles the information around the different cooperative areas to achieve the necessary result.” Let us note this ability was present 315,000 year ago and unused until complex language appeared about 70,000 estimated years ago.

The ability of brain cells to cooperate and achieve the necessary result is and was present in every brain that ever existed!

DAVID: It is obvious we humans didn't know how to use our very supple brain until we finally tried it out to its full extent.

It is obvious that every brained organism that ever lived used and uses its cooperative brain cells to achieve whatever results are necessary. It is also obvious that the human brain expanded when new factors (e.g. new weapons, tools, ideas, discoveries, clothes, use of fire, changing conditions) required additional cells. It is far from obvious that brain cells were once there for no purpose at all, simply waiting to fulfil some vague future purpose.

DAVID: The stasis must be viewed as a required experimental learning period.

You have never explained how one can learn without producing anything new. The stasis must be viewed as a period when there were no new requirements. Or whatever requirements there were could be dealt with by the existing mechanism for complexification.

DAVID: The shrinkage from complexification obviously means it was oversized from the beginning. All in anticipation of future usage. dhw has never given a reasonable explanation of the oversized beginning to more than match the current needs use at the time of the initial appearance of this sapiens brain.

We spent a lot of time discussing the idea that speciation/adaptation entailed a loss of genes, and eventually you agreed that this happened when the genes were no longer required. You don’t seem to have grasped the concept of redundancy. Sapiens’ cells would have increased to 1350 cc as the RESULT of a new requirement, i.e. ALL the new cells were required to meet whatever was the new need. Otherwise, there would have been no reason for the expansion. From then on, all the cells would have been used. However, a point was reached when new needs would have required further expansion, but the brain could not expand any more without creating problems for the anatomy. And so from that point on, instead of new cells being added, the existing cells had to enhance their ability to complexify. This ability then proved so efficient that cells which had been ESSENTIAL in the past now became redundant. Exactly the same principle as when adaptation/innovation/speciation results in the loss of genes which had previously been essential. The rest of your post simply repeats your belief that 315,000 years ago, for no immediate reason, your God gave us more cells than we needed, we spent 300,000 years learning to use them by producing nothing - although you’ve now decided it was only 245,000 years because of language acquisition - and when we had finally learned to use them, we didn't need them! I see no logic in this theory, and am still waiting for you to provide a logical reason for dismissing my own.

Survival
DAVID: Darwin saw speciation as a survival mechanism and I see God as the designer of new species.

dhw: There is no contradiction between the two theories. Even if your God designed all the innovations which led to new species, the purpose of those innovations was to improve chances of survival.

DAVID: Of course without survival evolution and life stop.

And so there is no contradiction between the two theories, and I presume you will stop attacking Darwin for arguing that the purpose of evolutionary innovations is to improve chances of survival. Just asking for clarification.

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, March 30, 2021, 16:16 (1332 days ago) @ dhw

DAVID: It is obvious we humans didn't know how to use our very supple brain until we finally tried it out to its full extent.

dhw: It is obvious that every brained organism that ever lived used and uses its cooperative brain cells to achieve whatever results are necessary. It is also obvious that the human brain expanded when new factors (e.g. new weapons, tools, ideas, discoveries, clothes, use of fire, changing conditions) required additional cells. It is far from obvious that brain cells were once there for no purpose at all, simply waiting to fulfil some vague future purpose.

What is wrong with recognizing extra cells being present for future use? With belief in God as the designer, it makes perfect sense.


DAVID: The stasis must be viewed as a required experimental learning period.

dhw: You have never explained how one can learn without producing anything new. The stasis must be viewed as a period when there were no new requirements. Or whatever requirements there were could be dealt with by the existing mechanism for complexification.

The large requirement of development of a complex language mechanism used the available cells presented in advance!!!


DAVID: The shrinkage from complexification obviously means it was oversized from the beginning. All in anticipation of future usage. dhw has never given a reasonable explanation of the oversized beginning to more than match the current needs use at the time of the initial appearance of this sapiens brain.

dhw: We spent a lot of time discussing the idea that speciation/adaptation entailed a loss of genes, and eventually you agreed that this happened when the genes were no longer required. You don’t seem to have grasped the concept of redundancy. Sapiens’ cells would have increased to 1350 cc as the RESULT of a new requirement, i.e. ALL the new cells were required to meet whatever was the new need. Otherwise, there would have been no reason for the expansion. From then on, all the cells would have been used. However, a point was reached when new needs would have required further expansion, but the brain could not expand any more without creating problems for the anatomy. And so from that point on, instead of new cells being added, the existing cells had to enhance their ability to complexify. This ability then proved so efficient that cells which had been ESSENTIAL in the past now became redundant. Exactly the same principle as when adaptation/innovation/speciation results in the loss of genes which had previously been essential. The rest of your post simply repeats your belief that 315,000 years ago, for no immediate reason, your God gave us more cells than we needed, we spent 300,000 years learning to use them by producing nothing - although you’ve now decided it was only 245,000 years because of language acquisition - and when we had finally learned to use them, we didn't need them! I see no logic in this theory, and am still waiting for you to provide a logical reason for dismissing my own.

I see no logic in your discussion, only your version of a review of history. Language development was a major requirement and the necessary cells were already present, weren't they? As for redundancy I am fully aware of its use in God's design: two eyes, two ears, two kidneys, two adrenal glands, two lungs, various oversized organs (i.e., liver).


Survival
DAVID: Darwin saw speciation as a survival mechanism and I see God as the designer of new species.

dhw: There is no contradiction between the two theories. Even if your God designed all the innovations which led to new species, the purpose of those innovations was to improve chances of survival.

DAVID: Of course without survival evolution and life stop.

dhw: And so there is no contradiction between the two theories, and I presume you will stop attacking Darwin for arguing that the purpose of evolutionary innovations is to improve chances of survival. Just asking for clarification.

The contradiction is not the need for survival, but the point I raised initially: God drives evolution from stage to stage, survival doesn't.

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, March 31, 2021, 11:36 (1331 days ago) @ David Turell

DAVID: It is obvious we humans didn't know how to use our very supple brain until we finally tried it out to its full extent.

dhw: It is obvious that every brained organism that ever lived used and uses its cooperative brain cells to achieve whatever results are necessary. It is also obvious that the human brain expanded when new factors (e.g. new weapons, tools, ideas, discoveries, clothes, use of fire, changing conditions) required additional cells. It is far from obvious that brain cells were once there for no purpose at all, simply waiting to fulfil some vague future purpose.

DAVID: What is wrong with recognizing extra cells being present for future use? With belief in God as the designer, it makes perfect sense.

What does not make sense is your theory that he gave us extra cells for no particular purpose, we didn’t use them for 300,000 years, and when we did, they proved to be redundant. Now please tell me what is wrong with my theory.

DAVID: The stasis must be viewed as a required experimental learning period.

dhw: You have never explained how one can learn without producing anything new. The stasis must be viewed as a period when there were no new requirements. Or whatever requirements there were could be dealt with by the existing mechanism for complexification.

DAVID: The large requirement of development of a complex language mechanism used the available cells presented in advance!!!

You still refuse to explain how one can learn without producing anything new, and why your God gave us extra cells we eventually didn’t need. I don’t know why you have suddenly switched the whole discussion to language. Previously, all you could talk about was 300,000 years of stasis, and now you want to cut it to 245,000 years of stasis. No problem for my theory. The leap to 1350 cc (caused by one of many possible new requirements) marks the beginning of H. sapiens. He needed the extra number of cells in order to meet that new requirement. From then on, there was no room for further expansion, and so all new requirements were met by enhanced complexification. That includes adjustments made to those parts of the brain and body associated with making sounds which earlier homos had been unable to make. The success of enhanced complexification resulted in some of the cells that had previously been essential becoming redundant (= shrinkage), just as when adaptations/ innovations/ speciation made previously essential cells redundant.

DAVID: I see no logic in your discussion, only your version of a review of history. Language development was a major requirement and the necessary cells were already present, weren't they?

Yes, the cells which had been essential for all earlier activities were still present, and met all new requirements by complexifying, and….yet again…complexification was so successful that some of them became redundant.

DAVID: As for redundancy I am fully aware of its use in God's design: two eyes, two ears, two kidneys, two adrenal glands, two lungs, various oversized organs (i.e., liver).

Totally irrelevant. Why can’t you recognize the logic of all cells being there to fulfil current needs, but becoming redundant when they are no longer needed? Why have your God popping all those extra new cells into a few brains for no immediate purpose except to “learn to use them”, and then when they are used, they turn out to be redundant?

Survival
DAVID: Darwin saw speciation as a survival mechanism and I see God as the designer of new species.

dhw: There is no contradiction between the two theories. Even if your God designed all the innovations which led to new species, the purpose of those innovations was to improve chances of survival.

DAVID: Of course without survival evolution and life stop.

dhw: And so there is no contradiction between the two theories, and I presume you will stop attacking Darwin for arguing that the purpose of evolutionary innovations is to improve chances of survival. Just asking for clarification.

DAVID: The contradiction is not the need for survival, but the point I raised initially: God drives evolution from stage to stage, survival doesn't.

Playing with words. Just change your sentence: God drives evolution from stage to stage, and the reason for the innovations that he designs is to improve chances of survival. Yes or no?

Evolution: more genomic evidence of pre-planning

by David Turell @, Wednesday, March 31, 2021, 18:15 (1331 days ago) @ dhw
edited by David Turell, Wednesday, March 31, 2021, 19:09

DAVID: What is wrong with recognizing extra cells being present for future use? With belief in God as the designer, it makes perfect sense.

dhw: What does not make sense is your theory that he gave us extra cells for no particular purpose, we didn’t use them for 300,000 years, and when we did, they proved to be redundant. Now please tell me what is wrong with my theory.

What is your theory? God gave us an oversized brain probably to allow more complexification than fewer cells would allow. You explain the history, while I think God did it. Note the next comment:

DAVID: The large requirement of development of a complex language mechanism used the available cells presented in advance!!!

dhw: You still refuse to explain how one can learn without producing anything new, and why your God gave us extra cells we eventually didn’t need. I don’t know why you have suddenly switched the whole discussion to language. Previously, all you could talk about was 300,000 years of stasis, and now you want to cut it to 245,000 years of stasis. No problem for my theory. The leap to 1350 cc (caused by one of many possible new requirements) marks the beginning of H. sapiens. He needed the extra number of cells in order to meet that new requirement. From then on, there was no room for further expansion, and so all new requirements were met by enhanced complexification. That includes adjustments made to those parts of the brain and body associated with making sounds which earlier homos had been unable to make. The success of enhanced complexification resulted in some of the cells that had previously been essential becoming redundant (= shrinkage), just as when adaptations/ innovations/ speciation made previously essential cells redundant.

Total history review with no real answer for the fact that we were given lots of extra unused cells until much later on. The bold about new requirements is baseless theory based on known archaeology as erectus and early sapiens lifestyles were quite similar if not exactly the same. I switched to language development because it is totally pertinent to this discussion as it shows new uses for four parts of the new brain. And it allowed us to exchange abstract ideas which then forced more development of brain usage with the neurons already available. Shrinkage simply means the brain was oversized to begin with. I explain possibly why below.


DAVID: As for redundancy I am fully aware of its use in God's design: two eyes, two ears, two kidneys, two adrenal glands, two lungs, various oversized organs (i.e., liver).

dhw: Totally irrelevant. Why can’t you recognize the logic of all cells being there to fulfil current needs, but becoming redundant when they are no longer needed? Why have your God popping all those extra new cells into a few brains for no immediate purpose except to “learn to use them”, and then when they are used, they turn out to be redundant?

You raised the issue of redundancy. My view is the extra cells allowed for a better form of complexification as we developed usage. It is possible God did not recognize exactly how we would learn to use our brain. We are beyond His control so here is your example of free-rein in action!


Survival
DAVID: Darwin saw speciation as a survival mechanism and I see God as the designer of new species.

dhw: There is no contradiction between the two theories. Even if your God designed all the innovations which led to new species, the purpose of those innovations was to improve chances of survival.

DAVID: Of course without survival evolution and life stop.

dhw: And so there is no contradiction between the two theories, and I presume you will stop attacking Darwin for arguing that the purpose of evolutionary innovations is to improve chances of survival. Just asking for clarification.

DAVID: The contradiction is not the need for survival, but the point I raised initially: God drives evolution from stage to stage, survival doesn't.

dhw: Playing with words. Just change your sentence: God drives evolution from stage to stage, and the reason for the innovations that he designs is to improve chances of survival. Yes or no?

No and yes. His reasons for His designs is for increased complexity. Survival is simply a guarantee from God. I'll repeat: God evolves and God drives evolution. Darwinist thinking is a drive for survival drives evolutionary adaptation, totally backward to my view. God designs and animals are therefore guaranteed survival.

Evolution: more genomic evidence of pre-planning

by dhw, Thursday, April 01, 2021, 11:50 (1330 days ago) @ David Turell

DAVID: What is your theory? God gave us an oversized brain probably to allow more complexification than fewer cells would allow. You explain the history, while I think God did it.

What is the logic behind him giving us extra cells to enhance complexification if the extra cells prove to be redundant? Once again, you have avoided telling me what is wrong with my theory. And my explanation does not exclude God – it only excludes your illogical interpretation of what your God did. I went on to set out the details of my theory yet again, but I shan’t repeat it, as your comments force me to repeat it anyway!

DAVID: Total history review with no real answer for the fact that we were given lots of extra unused cells until much later on.

A history review is essential if you want your theory to fit in with the history! I am proposing that he did NOT give us extra unused cells! I even bolded the argument. The extra cells were essential for the first sapiens to meet new requirements. All 1350 cc were used. And when much later there were new requirements, complexification took over, and this proved so efficient that some of the previously essential cells became redundant (= shrinkage).

DAVID: The bold about new requirements is baseless theory based on known archaeology as erectus and early sapiens lifestyles were quite similar if not exactly the same.

Once more: Nobody knows what the new requirements were that caused ANY of the expansions. You were kind enough to list some of the possible past causes yourself. Once more: new tools, new weapons, new ideas, new discoveries, use of fire, clothes, changes in the environment etc. And once more: the changes were not in the lifestyle, which was always dedicated to survival, but in the means of improving the chances of survival. Example: the hunter with a brand new weapon is still a hunter.

DAVID: I switched to language development because it is totally pertinent to this discussion as it shows new uses for four parts of the new brain. And it allowed us to exchange abstract ideas which then forced more development of brain usage with the neurons already available.

Of course it’s pertinent. And you’ve hit the nail on the head: in order to develop language, the “available” 1350cc of cells that were essential from the beginning of sapiens’ history must have complexified, presumably because expansion was no longer possible.

DAVID: Shrinkage simply means the brain was oversized to begin with. I explain possibly why below.
DAVID: You raised the issue of redundancy. My view is the extra cells allowed for a better form of complexification as we developed usage. It is possible God did not recognize exactly how we would learn to use our brain. We are beyond His control so here is your example of free-rein in action!

So your God gave us too many cells in the first place – in his own “human” way he didn’t really know what he was doing. And why is that more likely for you than the proposal that ALL the cells were necessary until complexification made them redundant? You have already conceded free rein by agreeing that complexification is autonomous, and you continue to ignore the theistic possibility that as well as complexifying, the mechanism your God designed could earlier have been used to add more cells to existing brains (as it does now with the hippocampus).

Brain expansion
QUOTE: "A cache of beautiful crystals collected 105,000 years ago in South Africa is shedding new light on the emergence of complex behaviours in our species."

DAVID: Just another study which shows how we gradually learned to use our brain aesthetically. It had the capacity initially waiting to be used. Aesthetics are immaterial ideation.

Nobody will deny that humans have advanced!!! That does not mean that your God performed operations on every species of hominin and homo, adding 200 cc without any immediate purpose, until finally he added the same amount to the first sapiens, who would likewise do nothing with the extra cells until eventually he used them, and then they proved to be unnecessary. Now please tell us why you find my theory illogical.

Survival
DAVID: God drives evolution from stage to stage, survival doesn't.

dhw: Playing with words. Just change your sentence: God drives evolution from stage to stage, and the reason for the innovations that he designs is to improve chances of survival. Yes or no?

DAVID: No and yes. His reason for His designs is for increased complexity.

Do you think complexity is a purpose in itself? If not, please tell us the purpose.

DAVID: Survival is simply a guarantee from God. I'll repeat: God evolves and God drives evolution. Darwinist thinking is a drive for survival drives evolutionary adaptation, totally backward to my view. God designs and animals are therefore guaranteed survival.

What is a “guarantee from God”? He designs an innovation, says to the organism: “I guarantee this will keep you alive”, and then it joins the other 99% of dead species? Even if God designed all life forms, and even if some of the designs entail complexification, the purpose of each design is to improve chances of survival (until eventually changing conditions wipe the species out). Why else would he have designed the complexities of the brontosaurus plus all the other 99%?

Evolution: more genomic evidence of pre-planning

by David Turell @, Thursday, April 01, 2021, 17:35 (1330 days ago) @ dhw

DAVID: Total history review with no real answer for the fact that we were given lots of extra unused cells until much later on.

dhw: A history review is essential if you want your theory to fit in with the history! I am proposing that he did NOT give us extra unused cells! I even bolded the argument. The extra cells were essential for the first sapiens to meet new requirements. All 1350 cc were used. And when much later there were new requirements, complexification took over, and this proved so efficient that some of the previously essential cells became redundant (= shrinkage)

Interesting approach which means all the all old brain cells and the new ones had a tiny bit to do. The acquisition of four areas of the brain to create complex language is a refutation of your theory. Specifically designated brain areas for certain functions also refutes it.
The newly created additional frontal and prefrontal cortexes allowed complex abstract thought which did not pre-exist their appearance. I don't buy your theory since it doesn't ac count from what I have just presented.


DAVID: I switched to language development because it is totally pertinent to this discussion as it shows new uses for four parts of the new brain. And it allowed us to exchange abstract ideas which then forced more development of brain usage with the neurons already available.

dhw: Of course it’s pertinent. And you’ve hit the nail on the head: in order to develop language, the “available” 1350cc of cells that were essential from the beginning of sapiens’ history must have complexified, presumably because expansion was no longer possible.

All you are saying is more cells had more to do, which is my point. complexification recruits cells to do more specific work.

DAVID: You raised the issue of redundancy. My view is the extra cells allowed for a better form of complexification as we developed usage. It is possible God did not recognize exactly how we would learn to use our brain. We are beyond His control so here is your example of free-rein in action!

dhw: So your God gave us too many cells in the first place – in his own “human” way he didn’t really know what he was doing.

Your wild misinterpretation. We have free will and can use our brain as we wish. God knew exactly what He was doing in granting free will. You can't distort that.


Brain expansion
QUOTE: "A cache of beautiful crystals collected 105,000 years ago in South Africa is shedding new light on the emergence of complex behaviours in our species."

DAVID: Just another study which shows how we gradually learned to use our brain aesthetically. It had the capacity initially waiting to be used. Aesthetics are immaterial ideation.

dhw: Nobody will deny that humans have advanced!!! That does not mean that your God performed operations on every species of hominin and homo, adding 200 cc without any immediate purpose, until finally he added the same amount to the first sapiens, who would likewise do nothing with the extra cells until eventually he used them, and then they proved to be unnecessary. Now please tell us why you find my theory illogical.

Oversized brain allowed for more refined complexification as brain was newly used by us. My God knows exactly what He is doing while your imagined God wan ders in a mental fog.


Survival

DAVID: His reason for His designs is for increased complexity.

dhw: Do you think complexity is a purpose in itself? If not, please tell us the purpose.

To finally reach the complexity of the human brain.


DAVID: Survival is simply a guarantee from God. I'll repeat: God evolves and God drives evolution. Darwinist thinking is a drive for survival drives evolutionary adaptation, totally backward to my view. God designs and animals are therefore guaranteed survival.

dhw: What is a “guarantee from God”? He designs an innovation, says to the organism: “I guarantee this will keep you alive”, and then it joins the other 99% of dead species? Even if God designed all life forms, and even if some of the designs entail complexification, the purpose of each design is to improve chances of survival (until eventually changing conditions wipe the species out). Why else would he have designed the complexities of the brontosaurus plus all the other 99%?

We have a different nuance of meaning about 'survival'. God's designs guarantee survival, while in your mind finding adaption for survival drives advances in evolution. Polar opposites. Turn about: with survival so important why are 99% dead?

Evolution: more genomic evidence of pre-planning

by dhw, Friday, April 02, 2021, 14:09 (1329 days ago) @ David Turell

dhw: […] The extra cells were essential for the first sapiens to meet new requirements. All 1350 cc were used. And when much later there were new requirements, complexification took over, and this proved so efficient that some of the previously essential cells became redundant (= shrinkage)

DAVID: Interesting approach which means all the all old brain cells and the new ones had a tiny bit to do. The acquisition of four areas of the brain to create complex language is a refutation of your theory. Specifically designated brain areas for certain functions also refutes it. The newly created additional frontal and prefrontal cortexes allowed complex abstract thought which did not pre-exist their appearance. I don't buy your theory since it doesn't account from what I have just presented.

Why a “tiny bit”? They would have done all that was required of them. And what do you mean by the “acquisition of four areas” and “newly created additional frontal and prefrontal cortexes?" The existing cortices were not new – they expanded! And once the final expansion had taken place, the areas of the brain associated with language complexified.

DAVID: All you are saying is more cells had more to do, which is my point. complexification recruits cells to do more specific work.

Then there is no disagreement between us. Right from the start, sapiens used his 1350cc worth of cells. When he needed to make a greater variety of sounds in order to communicate a wider variety of meanings, those existing parts of the brain that were used to link thoughts to sounds, and to make the sounds, had to complexify, because the brain had reached its limit for expansion. What’s the problem?

(I have omitted the digression concerning free will, but will come back to it on the “Theodicy” thread under “subduction”.)

dhw: ...please tell us why you find my theory illogical.

DAVID: Oversized brain allowed for more refined complexification as brain was newly used by us. My God knows exactly what He is doing while your imagined God wanders in a mental fog.

So a God who endows cells with the autonomous ability not only to complexify (you grant the autonomy) but also to produce additional cells when required is wandering in a mental fog. Whereas a God who produces extra cells which are necessary to improve complexification but which aren’t necessary (shrinkage), knows exactly what he is doing. And, to remind ourselves of your basic theory, the addition of cells for some vague future purpose seems more likely to you than the addition of cells to meet requirements that can’t be met by the existing number of cells.

Survival
DAVID: His reason for His designs is for increased complexity.

dhw: Do you think complexity is a purpose in itself? If not, please tell us the purpose.

DAVID: To finally reach the complexity of the human brain.

So your God had to design the brontosaurus because otherwise he could not have designed the complex human brain. Your reasoning?

DAVID: Survival is simply a guarantee from God. I'll repeat: God evolves and God drives evolution. Darwinist thinking is a drive for survival drives evolutionary adaptation, totally backward to my view. God designs and animals are therefore guaranteed survival.

dhw: What is a “guarantee from God”? He designs an innovation, says to the organism: “I guarantee this will keep you alive”, and then it joins the other 99% of dead species? Even if God designed all life forms, and even if some of the designs entail complexification, the purpose of each design is to improve chances of survival (until eventually changing conditions wipe the species out). Why else would he have designed the complexities of the brontosaurus plus all the other 99%?

DAVID: We have a different nuance of meaning about 'survival'. God's designs guarantee survival, while in your mind finding adaption for survival drives advances in evolution. Polar opposites. Turn about: with survival so important why are 99% dead?

I asked what you meant by guaranteeing survival. No explanation. Your question is far more relevant to your own theory: if survival is guaranteed, why are 99% dead? I suggest that survival is NEVER guaranteed. All organisms, however, TRY to survive, and that is why they adapt and innovate, using mechanisms possibly designed by your God.

DAVID: Returning vision with an RNA injection in the eye:
https://www.sciencedaily.com/releases/2021/04/210401112532.htm

QUOTE: A Penn Medicine patient with a genetic form of childhood blindness gained vision, which lasted more than a year, after receiving a single injection of an experimental RNA therapy into the eye.

DAVID: Here is proof of my thought that our God-given brains can correct biochemical genomic errors beyond God's control systems. Perhaps that was His reason for The enormous ability of our brains, far beyond survival needs, an observatiOn you can't answer meaningfully.

I would regard the battle against diseases and genetic defects – or what you like to call errors beyond the control of your all-powerful, in-total-control God – as part of the battle for survival, but I have never suggested that our enormous abilities were confined to survival! Our specialness, however, does not prove that your God had to design the brontosaurus etc. before he could design us.

Evolution: more genomic evidence of pre-planning

by David Turell @, Friday, April 02, 2021, 16:55 (1329 days ago) @ dhw

dhw: ...please tell us why you find my theory illogical.

DAVID: Oversized brain allowed for more refined complexification as brain was newly used by us. My God knows exactly what He is doing while your imagined God wanders in a mental fog.

dhw: So a God who endows cells with the autonomous ability not only to complexify (you grant the autonomy) but also to produce additional cells when required is wandering in a mental fog. Whereas a God who produces extra cells which are necessary to improve complexification but which aren’t necessary (shrinkage), knows exactly what he is doing. And, to remind ourselves of your basic theory, the addition of cells for some vague future purpose seems more likely to you than the addition of cells to meet requirements that can’t be met by the existing number of cells.

The bold makes no sense. The enormous addition is not explained by the minimal new requirements as Erectus advanced to Sapiens, for the full evidence, which you ignore, is sapiens first lifestyle hardly differed from Erectus. You really can't explain the giant addition of cells in the frontal and prefrontal areas, which, we know, are later used for complex ideation.


Survival
DAVID: His reason for His designs is for increased complexity.

dhw: Do you think complexity is a purpose in itself? If not, please tell us the purpose.

DAVID: To finally reach the complexity of the human brain.

dhw: So your God had to design the brontosaurus because otherwise he could not have designed the complex human brain. Your reasoning?

Evolution had to complexify from the bronto's pea-sized brain to ours. Remember God chose to evolve one step at a time.


DAVID: We have a different nuance of meaning about 'survival'. God's designs guarantee survival, while in your mind finding adaption for survival drives advances in evolution. Polar opposites. Turn about: with survival so important why are 99% dead?

dhw: I asked what you meant by guaranteeing survival. No explanation. Your question is far more relevant to your own theory: if survival is guaranteed, why are 99% dead? I suggest that survival is NEVER guaranteed. All organisms, however, TRY to survive, and that is why they adapt and innovate, using mechanisms possibly designed by your God.

You've backed away from my real point: survival adaptations don't drive evolutionary advances.


DAVID: Returning vision with an RNA injection in the eye:
https://www.sciencedaily.com/releases/2021/04/210401112532.htm

QUOTE: A Penn Medicine patient with a genetic form of childhood blindness gained vision, which lasted more than a year, after receiving a single injection of an experimental RNA therapy into the eye.

DAVID: Here is proof of my thought that our God-given brains can correct biochemical genomic errors beyond God's control systems. Perhaps that was His reason for The enormous ability of our brains, far beyond survival needs, an observation you can't answer meaningfully.

dhw: I would regard the battle against diseases and genetic defects – or what you like to call errors beyond the control of your all-powerful, in-total-control God – as part of the battle for survival, but I have never suggested that our enormous abilities were confined to survival! Our specialness, however, does not prove that your God had to design the brontosaurus etc. before he could design us.

Same answer: "Evolution had to complexify from the bronto's pea-sized brain to ours. Remember God chose to evolve one step at a time."

Evolution: more genomic evidence of pre-planning

by dhw, Saturday, April 03, 2021, 09:16 (1329 days ago) @ David Turell

dhw: ...please tell us why you find my theory illogical.

DAVID: Oversized brain allowed for more refined complexification as brain was newly used by us. My God knows exactly what He is doing while your imagined God wanders in a mental fog.

dhw: So a God who endows cells with the autonomous ability not only to complexify (you grant the autonomy) but also to produce additional cells when required is wandering in a mental fog. Whereas a God who produces extra cells which are necessary to improve complexification but which aren’t necessary (shrinkage), knows exactly what he is doing. And, to remind ourselves of your basic theory, the addition of cells for some vague future purpose seems more likely to you than the addition of cells to meet requirements that can’t be met by the existing number of cells.

DAVID: The bold makes no sense. The enormous addition is not explained by the minimal new requirements as Erectus advanced to Sapiens, for the full evidence, which you ignore, is sapiens first lifestyle hardly differed from Erectus. You really can't explain the giant addition of cells in the frontal and prefrontal areas, which, we know, are later used for complex ideation.

You go on and on about the “enormous addition”. It was no more enormous than the additions throughout history. And you go on and on about the fact that there was little change in lifestyle, but you keep ignoring my answer: that the lifestyle of ALL preceding hominins and homos was based on improving chances of survival, and you keep ignoring your own answer: these improvements were in the form of new tools, new weapons, new ideas, clothes, use of fire, adapting to new conditions. Approx. 200 cc at a time. The hunter with a new spear is still a hunter. Now please tell me why you find my theory and my explanations illogical.

Survival
DAVID: His reason for His designs is for increased complexity.

dhw: Do you think complexity is a purpose in itself? If not, please tell us the purpose.

DAVID: To finally reach the complexity of the human brain.

dhw: So your God had to design the brontosaurus because otherwise he could not have designed the complex human brain. Your reasoning?

DAVID: Evolution had to complexify from the bronto's pea-sized brain to ours. Remember God chose to evolve one step at a time.

Why do you say evolution had to do it? According to you, your God had to do it. You wrote: “Of course the brontosaurus is not directly connected to us”. We did not descend from brontosauruses, and you have agreed that there is no connection between 99% of past life forms and us. So why did your God have to design the pea-sized brain of the brontosaurus, from which we did not descend, in order to design our complex brain?

DAVID: We have a different nuance of meaning about 'survival'. God's designs guarantee survival, while in your mind finding adaption for survival drives advances in evolution. Polar opposites. Turn about: with survival so important why are 99% dead?

dhw: I asked what you meant by guaranteeing survival. No explanation. Your question is far more relevant to your own theory: if survival is guaranteed, why are 99% dead? I suggest that survival is NEVER guaranteed. All organisms, however, TRY to survive, and that is why they adapt and innovate, using mechanisms possibly designed by your God.

DAVID: You've backed away from my real point: survival adaptations don't drive evolutionary advances.

Once again, you refuse to say what you mean by “guaranteeing survival”. You’ve “backed away from my real point”: whether or not your God designed adaptations and innovations, their purpose is to improve chances of survival. This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

Evolution: more genomic evidence of pre-planning

by David Turell @, Saturday, April 03, 2021, 18:09 (1328 days ago) @ dhw

DAVID: The bold makes no sense. The enormous addition is not explained by the minimal new requirements as Erectus advanced to Sapiens, for the full evidence, which you ignore, is sapiens first lifestyle hardly differed from Erectus. You really can't explain the giant addition of cells in the frontal and prefrontal areas, which, we know, are later used for complex ideation.[/b]

dhw: You go on and on about the “enormous addition”. It was no more enormous than the additions throughout history. And you go on and on about the fact that there was little change in lifestyle, but you keep ignoring my answer:.... Now please tell me why you find my theory and my explanations illogical.

You've totally missed the point so I now have it in bold. It isn't just that 200 cc was added. The key is where it was added. This is the FIRST time the main addition is entirely in the abstract and idea THINKIG AREA. This is the area we had to learn to use very completely. I have no idea why you haven't understood this.


Survival

DAVID: To finally reach the complexity of the human brain.

dhw: So your God had to design the brontosaurus because otherwise he could not have designed the complex human brain. Your reasoning?

DAVID: Evolution had to complexify from the bronto's pea-sized brain to ours. Remember God chose to evolve one step at a time.

dhw: You wrote: “Of course the brontosaurus is not directly connected to us”. We did not descend from brontosauruses, and you have agreed that there is no connection between 99% of past life forms and us. So why did your God have to design the pea-sized brain of the brontosaurus, from which we did not descend, in order to design our complex brain?

History tells us what God decided to do, evolve step by step so life becomes an enormous bush..


DAVID: We have a different nuance of meaning about 'survival'. God's designs guarantee survival, while in your mind finding adaption for survival drives advances in evolution. Polar opposites. Turn about: with survival so important why are 99% dead?

dhw: I asked what you meant by guaranteeing survival. No explanation. Your question is far more relevant to your own theory: if survival is guaranteed, why are 99% dead? I suggest that survival is NEVER guaranteed. All organisms, however, TRY to survive, and that is why they adapt and innovate, using mechanisms possibly designed by your God.

DAVID: You've backed away from my real point: survival adaptations don't drive evolutionary advances.

dhw: Once again, you refuse to say what you mean by “guaranteeing survival”. You’ve “backed away from my real point”: whether or not your God designed adaptations and innovations, their purpose is to improve chances of survival. This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

My original point remains. Darwin thought a struggle for survival drove evolution. I say God designed evolution and guaranteed survival for each step until the next steps were achieved. Total conflict with Darwin

Evolution: more genomic evidence of pre-planning

by dhw, Sunday, April 04, 2021, 10:54 (1327 days ago) @ David Turell

DAVID: The bold makes no sense. The enormous addition is not explained by the minimal new requirements as Erectus advanced to Sapiens, for the full evidence, which you ignore, is sapiens first lifestyle hardly differed from Erectus. You really can't explain the giant addition of cells in the frontal and prefrontal areas, which, we know, are later used for complex ideation.[/b]

dhw: You go on and on about the “enormous addition”. It was no more enormous than the additions throughout history. And you go on and on about the fact that there was little change in lifestyle, but you keep ignoring my answer:.... Now please tell me why you find my theory and my explanations illogical.

DAVID: You've totally missed the point so I now have it in bold. It isn't just that 200 cc was added. The key is where it was added. This is the FIRST time the main addition is entirely in the abstract and idea THINKING AREA. This is the area we had to learn to use very completely. I have no idea why you haven't understood this.

First your “point” was the enormous addition, then your “point” was no change in lifestyle, and when I’ve answered your “points”, you shift to another “point”! It also helps you to leave out certain parts of my answer, and five minutes' research on the Internet reveals a fact that you might not have known, which is that The frontal and temporal lobes of the erectus brain also expanded. Nobody knows the direct cause of ANY of the expansions, but I gave you a list of possible causes: improvements in the form of “new tools, new weapons, new ideas, clothes, use of fire, adapting to new conditions”. All of these would have applied just as much to erectus as to sapiens, and to sapiens as much as to erectus, and none of them would have been possible without a “THINKING AREA”. The erectus brain expanded by around 300 cc. during their time on earth, and there is even evidence (shell carvings) of erectus art. “I have no idea why you haven’t understood” that expansions and improvements accompanied one another all the way through homo history, they all required "thinking", and it makes more sense for brains to expand by implementing new ideas than by anticipating them – as proven by the way in which the modern brain RESPONDS to new challenges and does not change itself in anticipation of them.

Survival
I asked for the purpose of increased complexity.

DAVID: To finally reach the complexity of the human brain.

Dhw: (…) So why did your God have to design the pea-sized brain of the brontosaurus, from which we did not descend, in order to design our complex brain?

DAVID: History tells us what God decided to do, evolve step by step so life becomes an enormous bush.

Yes indeed. Whether (theistic version) your God designed it directly or designed a mechanism to produce it, life became an enormous bush. It did not consist of one straight line from bacteria to H. sapiens, but diversified into vast numbers of branches, 99% of which had no connection to humans. The brontosaurus was just one example. This does not support your theory that God’s one and only purpose was to design H. sapiens. Please stop this endless dodging.

dhw: You’ve “backed away from my real point”: whether or not your God designed adaptations and innovations, their purpose is to improve chances of survival. This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

DAVID: My original point remains. Darwin thought a struggle for survival drove evolution. I say God designed evolution and guaranteed survival for each step until the next steps were achieved. Total conflict with Darwin.

So the purpose of every adaptation and innovation was to guarantee survival of every organism, until God decided to kill off the 99% of organisms that had no connection with H. sapiens. Whereas Darwin only tells us that the purpose of every adaptation and innovation was to enable every organism to survive until it died. Hardly total conflict.

Evolution: more genomic evidence of pre-planning

by David Turell @, Sunday, April 04, 2021, 18:52 (1327 days ago) @ dhw
edited by David Turell, Sunday, April 04, 2021, 18:59

DAVID: You've totally missed the point so I now have it in bold. It isn't just that 200 cc was added. The key is where it was added. This is the FIRST time the main addition is entirely in the abstract and idea THINKING AREA. This is the area we had to learn to use very completely. I have no idea why you haven't understood this.

dhw: First your “point” was the enormous addition, then your “point” was no change in lifestyle, and when I’ve answered your “points”, you shift to another “point”! It also helps you to leave out certain parts of my answer, and five minutes' research on the Internet reveals a fact that you might not have known, which is that The frontal and temporal lobes of the erectus brain also expanded.

I knew about erectus expansion, but it didn't develop much aesthetic or analytical thinking as evidenced by the small change in lifestyle during their existence. The huge advances in lifestyle came only because of the appearance of an oversized-for-current-needs prefrontal and frontal regions that allowed for much more complex ideation. The stasis period only represents learning to is use it. You don't deny that it took lots of time.

dhw: it makes more sense for brains to expand by implementing new ideas than by anticipating them – as proven by the way in which the modern brain RESPONDS to new challenges and does not change itself in anticipation of them.

If you believed in God as the designer it would make perfect sense.


Survival

DAVID: History tells us what God decided to do, evolve step by step so life becomes an enormous bush.

dhw: Yes indeed. Whether (theistic version) your God designed it directly or designed a mechanism to produce it, life became an enormous bush. It did not consist of one straight line from bacteria to H. sapiens, but diversified into vast numbers of branches, 99% of which had no connection to humans.

Again you have forgotten or ignored the need for huge food supply.


dhw: You’ve “backed away from my real point”: whether or not your God designed adaptations and innovations, their purpose is to improve chances of survival. This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

DAVID: My original point remains. Darwin thought a struggle for survival drove evolution. I say God designed evolution and guaranteed survival for each step until the next steps were achieved. Total conflict with Darwin.

dhw: So the purpose of every adaptation and innovation was to guarantee survival of every organism, until God decided to kill off the 99% of organisms that had no connection with H. sapiens. Whereas Darwin only tells us that the purpose of every adaptation and innovation was to enable every organism to survive until it died. Hardly total conflict.

I'll repeat: the conflict is in the purpose of 'survival'. It doesn't drive evolution by adaptation, but by God designing new species.

Evolution: more genomic evidence of pre-planning

by dhw, Monday, April 05, 2021, 11:31 (1326 days ago) @ David Turell

dhw: The frontal and temporal lobes of the erectus brain also expanded.

DAVID: I knew about erectus expansion, but it didn't develop much aesthetic or analytical thinking as evidenced by the small change in lifestyle during their existence. The huge advances in lifestyle came only because of the appearance of an oversized-for-current-needs prefrontal and frontal regions that allowed for much more complex ideation. The stasis period only represents learning to is use it. You don't deny that it took lots of time.

You refuse to say how one can learn to use something without producing anything, and you force me to repeat both theories since you ignore all my responses. Your theory: when the pre-sapiens brain expanded the usual amount, it did so for no immediate purpose, was oversized, and was not fully used until there were huge advances in lifestyle following the period of stasis. Mine: ALL brain expansions (including sapiens) came about because of an immediate requirement, after which the WHOLE brain was used until its capacity for complexification was exhausted, and (with the exception of sapiens) more cells were needed in response to new requirements. You persist in emphasizing “small change in lifestyle”, and I keep reminding you that even early sapiens did not change his lifestyle, because lifestyle until modern sapiens consisted mainly of improving methods of survival. Example repeated ad nauseam: the hunter with a new spear remained a hunter. The process of expansion to meet new needs only changed in sapiens because further expansion would have caused anatomical problems, and so enhanced complexification took over. And finally, this proved so effective that cells which had previously been essential now became redundant. Your objections to this proposal have been 1) that the sapiens addition was too huge (it was the same as all the other expansions), 2) that there was no change in lifestyle (just explained for the umpteenth time), and 3) that it was the frontal and temporal lobes that expanded (nothing unique in that). What is your next objection?

dhw: ...it makes more sense for brains to expand by implementing new ideas than by anticipating them – as proven by the way in which the modern brain RESPONDS to new challenges and does not change itself in anticipation of them.

DAVID: If you believed in God as the designer it would make perfect sense.

Thank you for at last agreeing that expansion in response (as opposed to anticipation) makes perfect sense. And of course you can believe in your God as the designer of the autonomous mechanism that made this possible, especially as you already believe that your God designed the autonomous mechanism that made complexification possible.

Survival
DAVID: History tells us what God decided to do, evolve step by step so life becomes an enormous bush.

dhw: Yes indeed. Whether (theistic version) your God designed it directly or designed a mechanism to produce it, life became an enormous bush. It did not consist of one straight line from bacteria to H. sapiens, but diversified into vast numbers of branches, 99% of which had no connection to humans.

DAVID: Again you have forgotten or ignored the need for huge food supply.

Again you have forgotten or ignored your own correct observation that PAST food supplies were for PAST life forms which had nothing to do with present life forms. All life forms, and not just humans, need and needed food!

dhw: […] This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

DAVID: My original point remains. Darwin thought a struggle for survival drove evolution. I say God designed evolution and guaranteed survival for each step until the next steps were achieved. Total conflict with Darwin.

dhw: So the purpose of every adaptation and innovation was to guarantee survival of every organism, until God decided to kill off the 99% of organisms that had no connection with H. sapiens. Whereas Darwin only tells us that the purpose of every adaptation and innovation was to enable every organism to survive until it died. Hardly total conflict.

DAVID: I'll repeat: the conflict is in the purpose of 'survival'. It doesn't drive evolution by adaptation, but by God designing new species.

Survival IS the purpose of all the adaptations and innovations that lead to new species (as per Darwin), whether God designed them or not!

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, April 05, 2021, 18:05 (1326 days ago) @ dhw

dhw: The frontal and temporal lobes of the erectus brain also expanded.

DAVID: I knew about erectus expansion, but it didn't develop much aesthetic or analytical thinking as evidenced by the small change in lifestyle during their existence. The huge advances in lifestyle came only because of the appearance of an oversized-for-current-needs prefrontal and frontal regions that allowed for much more complex ideation. The stasis period only represents learning to is use it. You don't deny that it took lots of time.

dhw: ALL brain expansions (including sapiens) came about because of an immediate requirement, after which the WHOLE brain was used until its capacity for complexification was exhausted, and (with the exception of sapiens) more cells were needed in response to new requirements.

This is the natural, no God argument. It does not answer why the enlargement had to include a huge expansion of 200 cc in the mostly unused prefrontal and frontal conceptual areas.

dhw: I keep reminding you that even early sapiens did not change his lifestyle, because lifestyle until modern sapiens consisted mainly of improving methods of survival. Example repeated ad nauseam: the hunter with a new spear remained a hunter.

Of course this advance in a mechanical hunting tool required conceptualization in the frontal lobe. My thought is not that not many additional neurons were needed for that advance compared to current use for advancements

dhw: Your objections to this proposal have been 1) that the sapiens addition was too huge (it was the same as all the other expansions).

Volume use, yes, but specified areas of frontal lobe enlargement totally ignored.

3) dhw: that it was the frontal and temporal lobes that expanded (nothing unique in that). What is your next objection?

Mainly frontal expansion, and the main point of my argument is the ability to conceptualize new concepts there, with help from temporal area with language development putting ideas into words starting roughly 70,000 years ago, 250,000 years after the initial enlargement. Stasis! Temporal lobe has sensory, visual, auditory and some memory coordination uses, not conceptual thought origination! Why do you persist in ignoring specificity of area enlargements?


DAVID: If you believed in God as the designer it would make perfect sense.

dhw: Thank you for at last agreeing that expansion in response (as opposed to anticipation) makes perfect sense.

What are you smoking to confuse my answer that way?


Survival

dhw: […] This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

DAVID: My original point remains. Darwin thought a struggle for survival drove evolution. I say God designed evolution and guaranteed survival for each step until the next steps were achieved. Total conflict with Darwin.

dhw: So the purpose of every adaptation and innovation was to guarantee survival of every organism, until God decided to kill off the 99% of organisms that had no connection with H. sapiens. Whereas Darwin only tells us that the purpose of every adaptation and innovation was to enable every organism to survive until it died. Hardly total conflict.

DAVID: I'll repeat: the conflict is in the purpose of 'survival'. It doesn't drive evolution by adaptation, but by God designing new species.

dhw: Survival IS the purpose of all the adaptations and innovations that lead to new species (as per Darwin), whether God designed them or not!

Without survival, life disappears. It must happen to continue evolution. I'll repeat again: the conflict is in the purpose of 'survival'. It doesn't drive evolution by adaptation, but by God designing new species.[/i]

Evolution: more genomic evidence of pre-planning

by dhw, Tuesday, April 06, 2021, 12:46 (1325 days ago) @ David Turell

dhw: ALL brain expansions (including sapiens) came about because of an immediate requirement, after which the WHOLE brain was used until its capacity for complexification was exhausted, and (with the exception of sapiens) more cells were needed in response to new requirements.

DAVID: This is the natural, no God argument. It does not answer why the enlargement had to include a huge expansion of 200 cc in the mostly unused prefrontal and frontal conceptual areas.

It is an argument that allows for God as the designer of an autonomous mechanism for complexification (you agree) and expansion (you disagree). How huge is “huge”? All earlier expansions were around 200cc.

dhw: I keep reminding you that even early sapiens did not change his lifestyle, because lifestyle until modern sapiens consisted mainly of improving methods of survival. Example repeated ad nauseam: the hunter with a new spear remained a hunter.

DAVID: Of course this advance in a mechanical hunting tool required conceptualization in the frontal lobe. My thought is not that not many additional neurons were needed for that advance compared to current use for advancements.

How do you know the number of neurons needed hundreds of thousands of years ago to meet the requirements of new ideas, tools, clothes, conditions, use of fire etc.? There is no point in comparing earlier advances (revolutionary in their day!) to ours, which in any case are implemented by complexification, not expansion.

dhw: Your objections to this proposal have been 1) that the sapiens addition was too huge (it was the same as all the other expansions).

DAVID: Volume use, yes, but specified areas of frontal lobe enlargement totally ignored.

I have just pointed out to you that erectus’s frontal and temporal lobes expanded, and you agree that new tools required front lobe conceptualization, so earlier lobes would also have been expanded in order to implement new concepts.
You have left out 2) – no change in lifestyle.

3) dhw: it was the frontal and temporal lobes that expanded (nothing unique in that). What is your next objection?

DAVID: Mainly frontal expansion, and the main point of my argument is the ability to conceptualize new concepts there, with help from temporal area with language development putting ideas into words starting roughly 70,000 years ago, 250,000 years after the initial enlargement. Stasis! Temporal lobe has sensory, visual, auditory and some memory coordination uses, not conceptual thought origination! Why do you persist in ignoring specificity of area enlargements?

You have just agreed that “advance in a mechanical hunting tool required conceptualization in the frontal lobe”. Therefore the frontal lobe would also have expanded! You’ve switched your period of stasis from 300,000 years to 250,000 years, but it doesn’t make the slightest difference. Humans build on the advances made by their predecessors, and I am proposing that ALL their successive brains expanded, as concepts became more and more complex. The sapiens expansion of the frontal and temporal lobes would initially have been the response to some new concept, and then, according to you, there were no more major new concepts (hence stasis) till language came along 250,000 years later, which would have resulted in the complexification of the frontal and temporal lobes, as these could not expand any more without causing anatomical problems. What is your objection?

DAVID: If you believed in God as the designer it would make perfect sense.

dhw: Thank you for at last agreeing that expansion in response (as opposed to anticipation) makes perfect sense.

DAVID: What are you smoking to confuse my answer that way?

It was your answer to my comment: “…it makes more sense for brains to expand by implementing new ideas than by anticipating them – as proven by the way in which the modern brain RESPONDS to new challenges and does not change in anticipation of them.” What does your answer mean, if not that you only need to believe that God designed the mechanism for my statement to make perfect sense? I have never discounted God as the designer.


Survival
dhw: […] This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

DAVID: Without survival, life disappears. It must happen to continue evolution. I'll repeat again: the conflict is in the purpose of 'survival'. It doesn't drive evolution by adaptation, but by God designing new species.

By survival you therefore mean that as long as there is one living organism, there is life on Earth. Nothing to do with evolution. Of course you can’t have evolution without living organisms, and survival - which means not dying - doesn’t drive evolution! You are messing about with words. What drives evolution is adaptations and innovations whose purpose is to enable organisms to survive, albeit only temporarily. Whether your God designs all the adaptations and innovations makes no difference. If he designs them, it is in order for the organisms to go on living. There is no conflict between the two theories: in both, the purpose of the adaptations and innovations that lead to evolution is to improve chances of survival, as proposed by Darwin.

Evolution: more genomic evidence of pre-planning

by David Turell @, Tuesday, April 06, 2021, 21:57 (1325 days ago) @ dhw

dhw: It is an argument that allows for God as the designer of an autonomous mechanism for complexification (you agree) and expansion (you disagree). How huge is “huge”? All earlier expansions were around 200cc.

Our current brain averages 1,200 cc+, so our enlargement of 200 cc is at 20% of the last size, quite a huge addition for a previous one lasting a couple millions of years

dhw: it was the frontal and temporal lobes that expanded (nothing unique in that). What is your next objection?

DAVID: Mainly frontal expansion, and the main point of my argument is the ability to conceptualize new concepts there, with help from temporal area with language development putting ideas into words starting roughly 70,000 years ago, 250,000 years after the initial enlargement. Stasis! Temporal lobe has sensory, visual, auditory and some memory coordination uses, not conceptual thought origination! Why do you persist in ignoring specificity of area enlargements?

dhw: You have just agreed that “advance in a mechanical hunting tool required conceptualization in the frontal lobe”. Therefore the frontal lobe would also have expanded! You’ve switched your period of stasis from 300,000 years to 250,000 years, but it doesn’t make the slightest difference. Humans build on the advances made by their predecessors, and I am proposing that ALL their successive brains expanded, as concepts became more and more complex. The sapiens expansion of the frontal and temporal lobes would initially have been the response to some new concept, and then, according to you, there were no more major new concepts (hence stasis) till language came along 250,000 years later, which would have resulted in the complexification of the frontal and temporal lobes, as these could not expand any more without causing anatomical problems. What is your objection?

Your total dismissal of the huge 20% expansion from erectus while at that time life's demands was approximately the same for both species. You won't admit it is over-expansion because that supports my claim God did it, plain and simple.


DAVID: If you believed in God as the designer it would make perfect sense.

dhw: Thank you for at last agreeing that expansion in response (as opposed to anticipation) makes perfect sense.

DAVID: What are you smoking to confuse my answer that way?

dhw: It was your answer to my comment: “…it makes more sense for brains to expand by implementing new ideas than by anticipating them – as proven by the way in which the modern brain RESPONDS to new challenges and does not change in anticipation of them.” What does your answer mean, if not that you only need to believe that God designed the mechanism for my statement to make perfect sense? I have never discounted God as the designer.

My answer confused you. I haven't changed my interpretation of God's works

Survival
dhw: […] This discussion began with your usual attempt to denigrate Darwin. In the context of his theory that meeting the need to survive is the purpose of evolutionary change, there is no conflict between his theory and yours.

DAVID: Without survival, life disappears. It must happen to continue evolution. I'll repeat again: the conflict is in the purpose of 'survival'. It doesn't drive evolution by adaptation, but by God designing new species.

dhw: By survival you therefore mean that as long as there is one living organism, there is life on Earth. Nothing to do with evolution. Of course you can’t have evolution without living organisms, and survival - which means not dying - doesn’t drive evolution! You are messing about with words. What drives evolution is adaptations and innovations whose purpose is to enable organisms to survive, albeit only temporarily. Whether your God designs all the adaptations and innovations makes no difference. If he designs them, it is in order for the organisms to go on living. There is no conflict between the two theories: in both, the purpose of the adaptations and innovations that lead to evolution is to improve chances of survival, as proposed by Darwin.

In the sense you are interpreting 'survival' you are correct, but it voids m y point that the driving force is God, and therefore survi val is guaranteed, not a struggle.

Evolution: more genomic evidence of pre-planning

by dhw, Wednesday, April 07, 2021, 11:11 (1324 days ago) @ David Turell

dhw: How huge is “huge”? [...]

DAVID: Our current brain averages 1,200 cc+, so our enlargement of 200 cc is at 20% of the last size, quite a huge addition for a previous one lasting a couple millions of years.

Three websites that disagree:
Homo erectus Vs. Homo-Sapien: General Difference - Viva ...
https://vivadifferences.com/homo-erectus-vs-homo-sapien/

"The brain capacity was between 900 and 1200 cubic centimeters.."

The IQ & brain size of Homo erectus | Pumpkin Person
https://pumpkinperson.com/2014/10/02/the-iq-brain-size-of-homo-erectus

So near the end of their run, when Homo erectus averaged 1,186 cc….."

And another which I referred to earlier but can’t find now:
"The upper part of the maximum estimated range for H. erectus endocranial capacity (1,200 cubic cm) thus overlaps with the lower values expected for Homo sapiens."

Please stop harping on about a huge leap. Our current size is no greater than that of late erectus.

dhw: You have just agreed that “advance in a mechanical hunting tool required conceptualization in the frontal lobe”. Therefore the frontal lobe would also have expanded! You’ve switched your period of stasis from 300,000 years to 250,000 years, but it doesn’t make the slightest difference. Humans build on the advances made by their predecessors, and I am proposing that ALL their successive brains expanded, as concepts became more and more complex. The sapiens expansion of the frontal and temporal lobes would initially have been the response to some new concept, and then, according to you, there were no more major new concepts (hence stasis) till language came along 250,000 years later, which would have resulted in the complexification of the frontal and temporal lobes, as these could not expand any more without causing anatomical problems. What is your objection?

DAVID: Your total dismissal of the huge 20% expansion from erectus while at that time life's demands was approximately the same for both species. You won't admit it is over-expansion because that supports my claim God did it, plain and simple.

"Huge" expansion dealt with above. Life’s demands = lifestyle, answered earlier: erectus and early sapiens’ lifestyle was based mainly on survival: “the hunter with a new spear is still a hunter”. There was no over-expansion – all cells were used, but new requirements were met through complexification, which proved so efficient that some previously essential cells became redundant. In any case, overexpansion would not support your claim that God did it! It would merely raise the question of why he gave sapiens cells that proved to be unnecessary! Meanwhile, you still refuse to tell us why a God who created an autonomous mechanism for complexification (you agree) could not have created an autonomous mechanism for expansion.

Survival
dhw: Whether your God designs all the adaptations and innovations makes no difference. If he designs them, it is in order for the organisms to go on living. There is no conflict between the two theories: in both, the purpose of the adaptations and innovations that lead to evolution is to improve chances of survival, as proposed by Darwin.

DAVID: In the sense you are interpreting 'survival' you are correct, but it voids m y point that the driving force is God, and therefore survi val is guaranteed, not a struggle.

How can survival be “guaranteed” when all organisms die, and 99% of species have become extinct? Evolution does not mean “life”, it means adaptations and innovations which are intended to improve chances of survival and which lead to new species. And EVERY species struggles to survive, whether your God designs their adaptations/innovations or not. Why else would they try to eat and to avoid being eaten?

Evolution: more genomic evidence of pre-planning 2

by David Turell @, Wednesday, April 07, 2021, 19:05 (1324 days ago) @ dhw
edited by David Turell, Wednesday, April 07, 2021, 19:16

dhw: How huge is “huge”? [...]

DAVID: Our current brain averages 1,200 cc+, so our enlargement of 200 cc is at 20% of the last size, quite a huge addition for a previous one lasting a couple millions of years.

dhw: Three websites that disagree:
Homo erectus Vs. Homo-Sapien: General Difference - Viva ...
https://vivadifferences.com/homo-erectus-vs-homo-sapien/

I've looked at this website. It says the largest erectus brain size reached 1,200 cc while sapiens was 1,350 cc. Also note the illustration of skull shape, and the small size of the frontal lobe area of erectus. You keep ignoring my point that it is the size of specific areas and their specific functional capacities that really counts.

This site tells the real story:

http://www.handprint.com/LS/ANC/brain.html

"Brain function is best inferred from the relative size and form of different brain areas. The erectus brain shows the characteristic "football" shape of hominid brains from Homo ergaster on up. This shape arises principally from a tandem expansion of the frontal (F) and occipital (back, O) lobes in relation to the rest of the brain.

"Increases in the frontal lobe appear in Australopithecus africanus and all subsequent hominid brains. This expansion signals a radical change in frontal lobe function, away from olfactory analysis toward complex abstract processing. In humans, the frontal lobes contribute heavily to social behavior and the planning of future actions.

"Terrence Deacon proposed that the frontal lobe is the developmental and cognitive key to human language ability. If so, frontal lobe expansion implies that hominid language abilities may be quite old, perhaps predating the toolmaking abilities that appear in stone artifacts at least 2.4 million years old. Language does not mean spoken language necessarily, but use of a syntax to interpret meaning from the order and form of two or more signs.

"The modern brain shows its greatest expansion in the middle parietal lobes (P). This expansion accounts for the rounded shape of human skulls in contrast to the flattened "football" form of skulls in earlier species, including Neandertals. Technological, abstract and computational thinking seems to arise in the parietal lobe, and this is the area of greatest relative difference between the two outlines. We might associate this parietal expansion with the appearance of remarkably diverse and refined tool cultures, and spoken language, about 90,000 years ago.

I'll admit I've simplified our discussion by using size only at times but what expands and what it functionally does is much more to the point. Your response?

Evolution: more genomic evidence of pre-planning 2+

by David Turell @, Wednesday, April 07, 2021, 21:15 (1324 days ago) @ David Turell

dhw: How huge is “huge”? [...]

DAVID: Our current brain averages 1,200 cc+, so our enlargement of 200 cc is at 20% of the last size, quite a huge addition for a previous one lasting a couple millions of years.

dhw: Three websites that disagree:
Homo erectus Vs. Homo-Sapien: General Difference - Viva ...
https://vivadifferences.com/homo-erectus-vs-homo-sapien/


I've looked at this website. It says the largest erectus brain size reached 1,200 cc while sapiens was 1,350 cc. Also note the illustration of skull shape, and the small size of the frontal lobe area of erectus. You keep ignoring my point that it is the size of specific areas and their specific functional capacities that really counts.

This site tells the real story:

http://www.handprint.com/LS/ANC/brain.html

"Brain function is best inferred from the relative size and form of different brain areas. The erectus brain shows the characteristic "football" shape of hominid brains from Homo ergaster on up. This shape arises principally from a tandem expansion of the frontal (F) and occipital (back, O) lobes in relation to the rest of the brain.

"Increases in the frontal lobe appear in Australopithecus africanus and all subsequent hominid brains. This expansion signals a radical change in frontal lobe function, away from olfactory analysis toward complex abstract processing. In humans, the frontal lobes contribute heavily to social behavior and the planning of future actions.

"Terrence Deacon proposed that the frontal lobe is the developmental and cognitive key to human language ability. If so, frontal lobe expansion implies that hominid language abilities may be quite old, perhaps predating the toolmaking abilities that appear in stone artifacts at least 2.4 million years old. Language does not mean spoken language necessarily, but use of a syntax to interpret meaning from the order and form of two or more signs.

"The modern brain shows its greatest expansion in the middle parietal lobes (P). This expansion accounts for the rounded shape of human skulls in contrast to the flattened "football" form of skulls in earlier species, including Neandertals. Technological, abstract and computational thinking seems to arise in the parietal lobe, and this is the area of greatest relative difference between the two outlines. We might associate this parietal expansion with the appearance of remarkably diverse and refined tool cultures, and spoken language, about 90,000 years ago.

I'll admit I've simplified our discussion by using size only at times but what expands and what it functionally does is much more to the point. Your response?

I'd like to add one more point on simply using volumes. Neanderthal brain size was bigger than ours! They didn't win.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Thursday, April 08, 2021, 12:48 (1323 days ago) @ David Turell

Part One
dhw: Please stop harping on about a huge leap. Our current size is no greater than that of late erectus.'

DAVID: I'll harp as much as I can. You have offered no real proof of your position about size while studiously ignoring function.

You keep dodging from size to function. I’ll deal with function later. My point here is that there is no huge leap in size:

DAVID: Our current brain averages 1,200 cc+, so our enlargement of 200 cc is at 20% of the last size, quite a huge addition for a previous one lasting a couple millions of years.

You are talking specifically about size, you tell us that the current average is 1200 cc, and I am pointing out that erectus finished up with approx 1200 cc. I quoted three websites to support this figure.
Homo erectus Vs. Homo-Sapien: General Difference - Viva ...
https://vivadifferences.com/homo-erectus-vs-homo-sapien/
"The brain capacity was between 900 and 1200 cubic centimeters.."

DAVID: I've looked at this website. It says the largest erectus brain size reached 1,200 cc while sapiens was 1,350 cc.

Correct, and you pointed out that our current size is 1200 cc, and my point is there is no huge leap – even from 1200 to 1350. Erectus himself went from 900-1200.

DAVID: Also note the illustration of skull shape, and the small size of the frontal lobe area of erectus. You keep ignoring my point that it is the size of specific areas and their specific functional capacities that really counts.

I am not ignoring it. You keep focusing on the size of the leap, which is why I asked “how huge is huge”?

The IQ & brain size of Homo erectus | Pumpkin Person
https://pumpkinperson.com/2014/10/02/the-iq-brain-size-of-homo-erectus
So near the end of their run, when Homo erectus averaged 1,186 cc….."

DAVID: Why did you leave out the rest of the paragraph?

Because the rest of the paragraph tells us that erectus advanced from 885 to 1,186, and it finishes up with a sapiens average of 1376 (taken from one particular group of people), which is not far off 1350. It simply confirms what I have just said. There is no “unfair play”.

dhw: And another which I referred to earlier but can’t find now:
"The upper part of the maximum estimated range for H. erectus endocranial capacity (1,200 cubic cm) thus overlaps with the lower values expected for Homo sapiens."

DAVID: I can't locate it either.

I didn’t make it up, and the point should be perfectly clear to you. There was no huge leap, so please stop insinuating that I am fiddling the figures (“unfair play”). We can now move on to function:

DAVID: This site tells the real story:
http://www.handprint.com/LS/ANC/brain.html

QUOTE: "Brain function is best inferred from the relative size and form of different brain areas. The erectus brain shows the characteristic "football" shape of hominid brains from Homo ergaster on up. This shape arises principally from a tandem expansion of the frontal (F) and occipital (back, O) lobes in relation to the rest of the brain.
"Increases in the frontal lobe appear in Australopithecus africanus and all subsequent hominid brains. This expansion signals a radical change in frontal lobe function, away from olfactory analysis toward complex abstract processing. In humans, the frontal lobes contribute heavily to social behavior and the planning of future actions.

And there in a nutshell is your answer. Both Australopithecus africanus and erectus show expansion of the frontal lobes “toward complex abstract reasoning”.

QUOTE: "Terrence Deacon proposed that the frontal lobe is the developmental and cognitive key to human language ability. If so, frontal lobe expansion implies that hominid language abilities may be quite old, perhaps predating the toolmaking abilities that appear in stone artifacts at least 2.4 million years old. Language does not mean spoken language necessarily, but use of a syntax to interpret meaning from the order and form of two or more signs.”

Their frontal lobes expanded and performed precisely the same function as ours, even to the extent that they may have had rudimentary forms of language.

QUOTE: "The modern brain shows its greatest expansion in the middle parietal lobes (P). This expansion accounts for the rounded shape of human skulls in contrast to the flattened "football" form of skulls in earlier species, including Neandertals. Technological, abstract and computational thinking seems to arise in the parietal lobe, and this is the area of greatest relative difference between the two outlines. We might associate this parietal expansion with the appearance of remarkably diverse and refined tool cultures, and spoken language, about 90,000 years ago."

I’ll have to leave it to you experts when it comes to naming which lobe does what, but it all fits in perfectly with lobes expanding throughout history as they implement what new requirements they have to meet, initially in what for us now seem rudimentary improvements. Whatever first caused the parietal expansion in sapiens would have sufficed for his way of life until the wave of new ideas and requirements resulted in enhanced complexification 90,000 years ago, and subsequently this proved so efficient that 150 cc of previously essential cells became redundant. (Contd. in Part Two)

Evolution: more genomic evidence of pre-planning Part Two

by dhw, Thursday, April 08, 2021, 13:04 (1323 days ago) @ dhw

Part Two
DAVID: I'll admit I've simplified our discussion by using size only at times but what expands and what it functionally does is much more to the point. Your response?

Thank you for your admission. Modern research shows that the sapiens leap was no “huger” than erectus’s, and that hominid brains and homo brains expanded in precisely the same areas, performing precisely the same functions.

DAVID: I'd like to add one more point on simply using volumes. Neanderthal brain size was bigger than ours! They didn't win.

QUOTE: "Analyses of DNA found in human fossils from around that time — the oldest known human remains in Europe — suggest that interbreeding between Homo sapiens and Neandertals, who were on the fast track to extinction, occurred more commonly than has often been assumed, two new studies suggest."

So now what is your theory: your God gave sapiens a bigger brain than he needed, and he gave Neanderthal an even bigger brain and then let him disappear (apart from leaving a few of his genes behind)? And all this is supposed to denote evidence of his “genomic pre-planning”? Doesn’t sound like much of a plan to me.

Survival
dhw: Whether your God designs all the adaptations and innovations makes no difference. If he designs them, it is in order for the organisms to go on living. There is no conflict between the two theories: in both, the purpose of the adaptations and innovations that lead to evolution is to improve chances of survival, as proposed by Darwin.

DAVID: In the sense you are interpreting 'survival' you are correct, but it voids m y point that the driving force is God, and therefore survival is guaranteed, not a struggle.

dhw: How can survival be “guaranteed” when all organisms die, and 99% of species have become extinct? Evolution does not mean “life”, it means adaptations and innovations which are intended to improve chances of survival and which lead to new species. And EVERY species struggles to survive, whether your God designs their adaptations/innovations or not. Why else would they try to eat and to avoid being eaten?

DAVID: All living organisms want to live, but I don't see humans struggling to live as wild animals have to do. It seems God favored us over them.

Then perhaps you should watch the news or read the newspapers. But disregarding the natural catastrophes that take or threaten millions of human lives, our brilliant minds have ensured that the struggle is vastly more complex than that of wild animals, who do not find themselves in refugee camps, totalitarian states, bankruptcy courts etc. And why are you ignoring the fact that early sapiens and his human ancestors followed very similar lifestyles to those of wild animals, but simply used increasingly sophisticated weapons to obtain their meat? All this is totally irrelevant to the point at issue, which is that evolutionary adaptations and innovations which led from bacteria to dinosaurs and humans served the purpose of improving chances of survival, as per Darwin, no matter whether they were designed by God or not.

DAVID: As for 99%, they have to go to make room, and are discarded as less complex models of evolutionary advances. God guarantees what He wishes to guarantee. Obvious.

What was the point of his directly designing 99% of species that would take up all that room and would then have to be discarded, if the only line of descent he wanted to design was the 1% from bacteria to humans? Please stop dodging, and please either accept the bold or give us a logical reason why you reject it.

Evolution: more genomic evidence of pre-planning Part Two

by David Turell @, Thursday, April 08, 2021, 19:15 (1323 days ago) @ dhw

Part Two
DAVID: I'll admit I've simplified our discussion by using size only at times but what expands and what it functionally does is much more to the point. Your response?

dhw: Thank you for your admission. Modern research shows that the sapiens leap was no “huger” than erectus’s, and that hominid brains and homo brains expanded in precisely the same areas, performing precisely the same functions.

DAVID: I'd like to add one more point on simply using volumes. Neanderthal brain size was bigger than ours! They didn't win.

QUOTE: "Analyses of DNA found in human fossils from around that time — the oldest known human remains in Europe — suggest that interbreeding between Homo sapiens and Neandertals, who were on the fast track to extinction, occurred more commonly than has often been assumed, two new studies suggest."

dhw: So now what is your theory: your God gave sapiens a bigger brain than he needed, and he gave Neanderthal an even bigger brain and then let him disappear (apart from leaving a few of his genes behind)? And all this is supposed to denote evidence of his “genomic pre-planning”? Doesn’t sound like much of a plan to me.

You can't escape from the point that we've reached, why so much potential functionality from a small new need, much more than the new requirement should require, as shown by what happened much later after the recognized stasis period?


Survival
dhw: Whether your God designs all the adaptations and innovations makes no difference. If he designs them, it is in order for the organisms to go on living. There is no conflict between the two theories: in both, the purpose of the adaptations and innovations that lead to evolution is to improve chances of survival, as proposed by Darwin.

DAVID: In the sense you are interpreting 'survival' you are correct, but it voids m y point that the driving force is God, and therefore survival is guaranteed, not a struggle.

dhw: How can survival be “guaranteed” when all organisms die, and 99% of species have become extinct? Evolution does not mean “life”, it means adaptations and innovations which are intended to improve chances of survival and which lead to new species. And EVERY species struggles to survive, whether your God designs their adaptations/innovations or not. Why else would they try to eat and to avoid being eaten?

DAVID: All living organisms want to live, but I don't see humans struggling to live as wild animals have to do. It seems God favored us over them.

dhw: Then perhaps you should watch the news or read the newspapers. But disregarding the natural catastrophes that take or threaten millions of human lives, our brilliant minds have ensured that the struggle is vastly more complex than that of wild animals, who do not find themselves in refugee camps, totalitarian states, bankruptcy courts etc. And why are you ignoring the fact that early sapiens and his human ancestors followed very similar lifestyles to those of wild animals, but simply used increasingly sophisticated weapons to obtain their meat? All this is totally irrelevant to the point at issue, which is that evolutionary adaptations and innovations which led from bacteria to dinosaurs and humans served the purpose of improving chances of survival, as per Darwin, no matter whether they were designed by God or not.

DAVID: As for 99%, they have to go to make room, and are discarded as less complex models of evolutionary advances. God guarantees what He wishes to guarantee. Obvious.

dhw: What was the point of his directly designing 99% of species that would take up all that room and would then have to be discarded, if the only line of descent he wanted to design was the 1% from bacteria to humans? Please stop dodging, and please either accept the bold or give us a logical reason why you reject it.

Same old logical point: God chose to evolve us from bacteria, per logical Adler and me. My view is God guaranteed survival at each stage of evolution, so survival is not the driving force of evolution.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Thursday, April 08, 2021, 18:51 (1323 days ago) @ dhw

dhw: I didn’t make it up, and the point should be perfectly clear to you. There was no huge leap, so please stop insinuating that I am fiddling the figures (“unfair play”). We can now move on to function:

There was a huge leap, despite your byplay in numbers.

dhw: The IQ & brain size of Homo erectus | Pumpkin Person

https://pumpkinperson.com/2014/10/02/the-iq-brain-size-of-homo-erectus
“So near the end of their run, when Homo erectus averaged 1,186 cc….."

DAVID: Why did you leave out the rest of the paragraph?

dhw: Because the rest of the paragraph tells us that erectus advanced from 885 to 1,186, and it finishes up with a sapiens average of 1376 (taken from one particular group of people), which is not far off 1350. It simply confirms what I have just said. There is no “unfair play”.


The bold in unfair play:

According to research cited by scholar Richard Lynn, Homo erectus emerged 1.7 million years ago with an average brain size of 885 cc and by 200,000 years ago, their brains had increased to 1,186 cc. How does this compare to modern Western brains? Data from scholar J.P. Rushton shows that Caucasian enlisted men in the U.S. army have a mean cranial capacity of 1468 (Standard Deviation (SD) = 91) and for Caucasian women the mean and SD are 1284 and 90 respectively. From here it can be deduced that a sex-combined sample (that was 50% men, 50% women) would have a mean and SD of 1376 and 137 respectively.

US Army comes from all parts of the population and Caucasian women are representative of sapiens. In men: 1,468 cc-1376 cc =s 96 cc extra you blithely ignore.

dhw: I’ll have to leave it to you experts when it comes to naming which lobe does what, but it all fits in perfectly with lobes expanding throughout history as they implement what new requirements they have to meet, initially in what for us now seem rudimentary improvements. Whatever first caused the parietal expansion in sapiens would have sufficed for his way of life until the wave of new ideas and requirements resulted in enhanced complexification 90,000 years ago, and subsequently this proved so efficient that 150 cc of previously essential cells became redundant. (Contd. in Part Two)

We agree brains enlarged. Your point is from need, but you have never explained why need produced more expansion than needed at the time point of expansion. I agree volume is just a substitute for the real issue which is the potential for new functionality in the newly enlarged areas. They all come oversized for current need.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Thursday, April 08, 2021, 22:14 (1323 days ago) @ David Turell

A careful study of early Homo brain cases raises interesting issues:

https://science.sciencemag.org/content/372/6538/165?utm_campaign=toc_sci-mag_2021-04-08...

Pattern and timing of brain reorganization in early Homo

Cranio-cerebral topography reveals that the earliest members of the genus Homo had a primitive frontal lobe organization, featuring an ape-like anterior location of the inferior precentral sulcus relative to the coronal suture. Our data indicate that the derived frontal lobe organization emerged relatively late during the evolution of Homo, between 1.7 and 1.5 Ma—not at the transition from Australopithecus to Homo, but clearly later than the first dispersals of Homo from Africa. Endocranial shape change associated with frontal lobe reorganization reveals differential expansion of the inferior prefrontal cortex and also of the posterior parietal and occipital cortex. This pattern indicates that the anterior and posterior cortical association areas evolved in tandem rather than in sequence. We infer from this that endocasts of early Homo predating frontal lobe reorganization potentially exhibit imprints of remnant ape-like lunate sulci in the parieto-occipital region. (my bold)

Comment: This paragraph tells us our frontal lobes started out in a primitive form but enlargement was all over the organ all at once as the bold indicates.

***

Neurofunctional implications

In modern human brains, the inferior frontal lobe is an important neurofunctional substrate for advanced social cognition, toolmaking and tool use, and articulated language. We may thus ask whether its evolutionary reorganization around 1.7 to 1.5 Ma was accompanied by major changes in technocultural performance. The earliest evidence for Mode II (Acheulean) technocultures in Africa largely coincides with incipient frontal lobe reorganization, and Mode I and Mode II lithic technologies were used concurrently during the critical time period. We hypothesize that this pattern reflects interdependent processes of brain-culture coevolution, where cultural innovation triggered changes in cortical interconnectivity and ultimately in external frontal lobe topography. On the other hand, the cerebral innovations that characterize Homo at ~1.5 Ma might have constituted the foundations of the “language-ready” brain of later Homo species. (my bold)

Comment: As we have discussed brain enlargement is associated with new artifacts and the authors imply that new uses caused changes in brain shape, but not size. And my bold shows the authors were certainly aware of what we refer to as stasis with future use coming later, while obviously the new-sized brain is prepared for it..

Evolution: new evidence of pre-planning

by David Turell @, Thursday, April 08, 2021, 23:21 (1323 days ago) @ David Turell

The eye brain circuitry origination started in the seas:

https://phys.org/news/2021-04-discovery-literally-textbook.html

"The network of nerves connecting our eyes to our brains is sophisticated and researchers have now shown that it evolved much earlier than previously thought, thanks to an unexpected source: the gar fish.

"Michigan State University's Ingo Braasch has helped an international research team show that this connection scheme was already present in ancient fish at least 450 million years ago. That makes it about 100 million years older than previously believed.

***

"This work, published in the journal Science on April 8, also means that this type of eye-brain connection predates animals living on land. The existing theory had been that this connection first evolved in terrestrial creatures and, from there, carried on into humans where scientists believe it helps with our depth perception and 3D vision.

***

"In a zebrafish, each eye has one nerve connecting it to the opposite side of the fish's brain. That is, one nerve connects the left eye to the brain's right hemisphere and another nerve connects its right eye to the left side of its brain.

"The other, more "ancient" fish do things differently. They have what's called ipsilateral or bilateral visual projections. Here, each eye has two nerve connections, one going to either side of the brain, which is also what humans have.

"Armed with an understanding of genetics and evolution, the team could look back in time to estimate when these bilateral projections first appeared. Looking forward, the team is excited to build on this work to better understand and explore the biology of visual systems.

***

"'We're finding more and more that many things that we thought evolved relatively late are actually very old," Braasch said, which actually makes him feel a little more connected to nature. "I learn something about myself when looking at these weird fish and understanding how old parts of our own bodies are. I'm excited to tell the story of eye evolution with a new twist this semester in our Comparative Anatomy class.'" (my bold)

Comment: the bold is certainly in support of pre-planning

Evolution: bacteria that don't evolve

by David Turell @, Thursday, April 08, 2021, 23:38 (1323 days ago) @ David Turell

A type has been found, and are their own fossils:

https://phys.org/news/2021-04-fossils-microbe-evolutionary-stasis-millions.html

"It's like something out of science fiction. Research led by Bigelow Laboratory for Ocean Sciences has revealed that a group of microbes, which feed off chemical reactions triggered by radioactivity, have been at an evolutionary standstill for millions of years.

***

"The microbe, Candidatus Desulforudis audaxviator, was first discovered in 2008 by a team of scientists, led by Tullis Onstott, a co-author on the new study. Found in a South African gold mine almost two miles beneath the Earth's surface, the microbes acquire the energy they need from chemical reactions caused by the natural radioactive decay in minerals. They inhabit water-filled cavities inside rocks in a completely independent ecosystem, free from reliance on sunlight or any other organisms.

"Because of their unique biology and isolation, the authors of the new study wanted to understand how the microbes evolved. They searched other environmental samples from deep underground and discovered Candidatus Desulforudis audaxviator in Siberia and California, as well as in several additional mines in South Africa. Since each environment was chemically different, these discoveries gave the researchers a unique opportunity to look for differences that have emerged between the populations over their millions of years of evolution.

***

"Using advanced tools that allow scientists to read the genetic blueprints of individual cells, the researchers examined the genomes of 126 microbes obtained from three continents. Surprisingly, they all turned out to be almost identical.

***

"Scientists found no evidence that the microbes can travel long distances, survive on the surface, or live long in the presence of oxygen. So, once researchers determined that there was no possibility the samples were cross-contaminated during research, plausible explanations dwindled.

"'The best explanation we have at the moment is that these microbes did not change much since their physical locations separated during the breakup of supercontinent Pangaea, about 175 million years ago," Stepanauskas said. "They appear to be living fossils from those days. That sounds quite crazy and goes against the contemporary understanding of microbial evolution."

***

"Stepanauskas and his colleagues hypothesize the standstill evolution they discovered is due to the microbe's powerful protections against mutation, which have essentially locked their genetic code. " (my bold)

Comment: not every twig of the bush of life is driven to adapt. Perhaps mutation is not blocked, just not necessary. Perhaps not required by God.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Thursday, April 08, 2021, 23:50 (1323 days ago) @ David Turell

Another view of the early homo brain study with nice illustrations:

https://phys.org/news/2021-04-modern-human-brain-africa-million.html

An international team led by Christoph Zollikofer and Marcia Ponce de León from the Department of Anthropology at the University of Zurich (UZH) has now succeeded in answering these questions. "Our analyses suggest that modern human brain structures emerged only 1.5 to 1.7 million years ago in African Homo populations," Zollikofer says. The researchers used computed tomography to examine the skulls of Homo fossils that lived in Africa and Asia 1 to 2 million years ago. They then compared the fossil data with reference data from great apes and humans.

Apart from the size, the human brain differs from that of the great apes particularly in the location and organization of individual brain regions. "The features typical to humans are primarily those regions in the frontal lobe that are responsible for planning and executing complex patterns of thought and action, and ultimately also for language," notes first author Marcia Ponce de León. Since these areas are significantly larger in the human brain, the adjacent brain regions shifted further back.

The first Homo populations outside Africa—in Dmanisi in what is now Georgia—had brains that were just as primitive as their African relatives. It follows, therefore, that the brains of early humans did not become particularly large or particularly modern until around 1.7 million years ago. However, these early humans were quite capable of making numerous tools, adapting to the new environmental conditions of Eurasia, developing animal food sources, and caring for group members in need of help.

During this period, the cultures in Africa became more complex and diverse, as evidenced by the discovery of various types of stone tools. The researchers think that biological and cultural evolution are probably interdependent. "It is likely that the earliest forms of human language also developed during this period," says anthropologist Ponce de León. Fossils found on Java provide evidence that the new populations were extremely successful: Shortly after their first appearance in Africa, they had already spread to Southeast Asia.
(my bold)

Comment: adds no new facts but is a clear discussion. Larger brain capacity brings new artifacts as in the bold

Evolution: more genomic evidence of pre-planning Part One

by dhw, Friday, April 09, 2021, 08:20 (1323 days ago) @ David Turell

dhw: I didn’t make it up, and the point should be perfectly clear to you. There was no huge leap, so please stop insinuating that I am fiddling the figures (“unfair play”). We can now move on to function:

DAVID: There was a huge leap, despite your byplay in numbers. The bold in unfair play:

QUOTE: According to research cited by scholar Richard Lynn, Homo erectus emerged 1.7 million years ago with an average brain size of 885 cc and by 200,000 years ago, their brains had increased to 1,186 cc. How does this compare to modern Western brains? Data from scholar J.P. Rushton shows that Caucasian enlisted men in the U.S. army have a mean cranial capacity of 1468 (Standard Deviation (SD) = 91) and for Caucasian women the mean and SD are 1284 and 90 respectively. From here it can be deduced that a sex-combined sample (that was 50% men, 50% women) would have a mean and SD of 1376 and 137 respectively.

DAVID: US Army comes from all parts of the population and Caucasian women are representative of sapiens. In men: 1,468 cc-1376 cc =s 96 cc extra you blithely ignore.

You have "blithely ignored" the fact that an average is the figure between the highest and the lowest. The women were 1284. 1468 + 1284 = 2752, giving an average of 1376, which is not far off the average of 1350 generally recognized as the average capacity of the sapiens brain. However, this is confusing, bearing in mind shrinkage, which led you to make a statement you have "blithely ignored":

DAVID: “Our current brain averages 1,200 cc+, so our enlargement is at 20% of the last size, quite a huge addition for a previous one lasting a couple of million years”. And then you "blithely ignored" two other statements:

QUOTE: "The brain capacity [of erectus] was between 900 and 1200 cubic centimeters.."

How does 1200 cc provide a 20% enlargement of 1200 cc?

QUOTE: "The upper part of the maximum estimated range for H. erectus endocranial capacity (1,200 cubic cm) thus overlaps with the lower values expected for Homo sapiens."

Even if there is some confusion over the figures, there is simply no point in making the bald statement that there was a huge expansion of 20%, especially bearing in mind that erectus’s expansion was 33%.

DAVID: We agree brains enlarged. Your point is from need, but you have never explained why need produced more expansion than needed at the time point of expansion.

I don’t know how often you want me to repeat that the initial requirements did NOT produce more expansion than needed at the time! That makes no sense! The new requirements would have triggered the expansion needed for their fulfilment and no more than that. From then on, either there was stasis (no more special requirements) or additional requirements could be dealt with by complexification until more cells were needed. That would explain erectus’s expansion, but as sapiens could not expand any more, the brain’s powers of complexification took over. And complexification proved so efficient that previously essential cells were no longer needed (shrinkage).

You have now kindly provided us with three articles, all of which confirm that earlier expansion took place in the same areas with the same functions as our own. I will edit the various quotes:

EDITED QUOTES: Cranio-cerebral topography reveals that the earliest members of the genus Homo had a primitive frontal lobe organization. […] Endocranial shape change associated with frontal lobe reorganization reveals differential expansion of the inferior prefrontal cortex and also of the posterior parietal and occipital cortex. (dhw’s bold)

QUOTE: In modern human brains, the inferior frontal lobe is an important neurofunctional substrate for advanced social cognition, toolmaking and tool use, and articulated language. We may thus ask whether its evolutionary reorganization around 1.7 to 1.5 Ma was accompanied by major changes in technocultural performance.

The answer is that they were, and any of these could have triggered the expansions.

QUOTE: We hypothesize that this pattern reflects interdependent processes of brain-culture coevolution, where cultural innovation triggered changes in cortical interconnectivity and ultimately in external frontal lobe topography. [dhw’s bold] On the other hand, the cerebral innovations that characterize Homo at ~1.5 Ma might have constituted the foundations of the “language-ready” brain of later Homo species. [David’s bold]

You could hardly have a clearer confirmation of the process I have been describing. The brain did not expand or complexify in advance of innovation: the changes were triggered by innovation. And the brain changes would have progressively led to the language-ready brain – not just of sapiens but of earlier homos, as confirmed here:

QUOTE: "Terrence Deacon proposed that the frontal lobe is the developmental and cognitive key to human language ability. If so, frontal lobe expansion implies that hominid language abilities may be quite old, perhaps predating the toolmaking abilities that appear in stone artifacts at least 2.4 million years old.

Please note the expansion of the frontal lobe in hominids. (Continued in Part Two)

Evolution: more genomic evidence of pre-planning Part Two

by dhw, Friday, April 09, 2021, 08:37 (1323 days ago) @ dhw

PART TWO
QUOTE: It follows, therefore, that the brains of early humans did not become particularly large or particularly modern until around 1.7 million years ago. However, these early humans were quite capable of making numerous tools, adapting to the new environmental conditions of Eurasia, developing animal food sources, and caring for group members in need of help.

All of these could have “triggered” the various expansions.

QUOTE: During this period, the cultures in Africa became more complex and diverse, as evidenced by the discovery of various types of stone tools. The researchers think that biological and cultural evolution are probably interdependent. "It is likely that the earliest forms of human language also developed during this period,"

And so we appear to have a smooth development, with areas of the brain complexifying or expanding, as “triggered” by the innovations of the time. There is no mention of giant leaps or of excessive cells, and why should there be? It all makes perfect sense: innovations trigger expansions and complexifications and restructuring in between periods of stasis, when there are no innovations, and future use by sapiens – e.g. an infinitely more complex language than that of earlier humans – will entail further complexification and restructuring of the existing cells because further expansion is not possible.

DAVID: I’d like to add one more point on simply using Volumes. Neanderthasl brain size was bigger than ours! They didn’t win.

dhw: So now what is your theory: your God gave sapiens a bigger brain than he needed, and he gave Neanderthal an even bigger brain and then let him disappear (apart from leaving a few of his genes behind)? And all this is supposed to denote evidence of his “genomic pre-planning”? Doesn’t sound like much of a plan to me.

DAVID: You can't escape from the point that we've reached, why so much potential functionality from a small new need, much more than the new requirement should require, as shown by what happened much later after the recognized stasis period?

Nobody knows what the new requirements were for ANY of the brain expansions (I listed some, and so did the articles), but they were obviously NOT small. You keep assuming that the brain expanded excessively in anticipation of bigger requirements to come. Why do you find this more logical than the brain expanding to meet a current need, then complexifying or expanding to meet new needs, though these may not have arisen for thousands of years (stasis)? And why do you think it sounds like good planning to have your God giving sapiens all those unnecessary cells that were later jettisoned (shrinkage), or specially designing Neanderthal’s even bigger brain and then killing him off?

Survival
dhw: All this is totally irrelevant to the point at issue, which is that evolutionary adaptations and innovations which led from bacteria to dinosaurs and humans served the purpose of improving chances of survival, as per Darwin, no matter whether they were designed by God or not.b

DAVID: As for 99%, they have to go to make room, and are discarded as less complex models of evolutionary advances. God guarantees what He wishes to guarantee. Obvious.

dhw: What was the point of his directly designing 99% of species that would take up all that room and would then have to be discarded, if the only line of descent he wanted to design was the 1% from bacteria to humans? Please stop dodging, and please either accept the bold or give us a logical reason why you reject it.

DAVID: Same old logical point: God chose to evolve us from bacteria, per logical Adler and me. My view is God guaranteed survival at each stage of evolution, so survival is not the driving force of evolution.

Your point is also that your God chose to evolve (= directly design) every other species from bacteria, including the 99% that had no connection with us. And what survival did God “guarantee”, since all organisms die, and 99% of his specially designed species have died out? Survival is not the driving force – the QUEST for survival is the driving force, and if God exists and if God really designs every single adaptation and innovation (which is pure theory), then even in your theory he designs them in order to enable organisms to fulfil the quest for survival. There is no conflict with Darwin’s theory. The conflict only arises when it comes to HOW the quest is fulfilled. You say through direct design by God, and Darwin says it’s through random mutations and natural selection – but leaves his options open as to the source of this mechanism.

Evolution: more genomic evidence of pre-planning Part Two

by David Turell @, Friday, April 09, 2021, 19:06 (1322 days ago) @ dhw

PART TWO

QUOTE: During this period, the cultures in Africa became more complex and diverse, as evidenced by the discovery of various types of stone tools. The researchers think that biological and cultural evolution are probably interdependent. "It is likely that the earliest forms of human language also developed during this period,"

dhw: And so we appear to have a smooth development, with areas of the brain complexifying or expanding, as “triggered” by the innovations of the time. There is no mention of giant leaps or of excessive cells, and why should there be?

You are reading Darwinist material which is what I am forced to present in these discussions. Other articles presented here discuss the known volume difference in Erectus and sapiens.

dhw: It all makes perfect sense: innovations trigger expansions and complexifications and restructuring in between periods of stasis, when there are no innovations, and future use by sapiens – e.g. an infinitely more complex language than that of earlier humans – will entail further complexification and restructuring of the existing cells because further expansion is not possible.

The bold is your totally unproven theory as to why our brain is no bigger. God gave us an oversized one to begin with and it shrunk, remember?

DAVID: You can't escape from the point that we've reached, why so much potential functionality from a small new need, much more than the new requirement should require, as shown by what happened much later after the recognized stasis period?

dhw: Nobody knows what the new requirements were for ANY of the brain expansions (I listed some, and so did the articles), but they were obviously NOT small. You keep assuming that the brain expanded excessively in anticipation of bigger requirements to come. Why do you find this more logical than the brain expanding to meet a current need, then complexifying or expanding to meet new needs,

The brain itself would have to know in advance how to expand in size and wiring complexity to accommodate needed abstract thoughts for future designs. I cannot see a natural cause as you wish, God does it.

dhw: And why do you think it sounds like good planning to have your God giving sapiens all those unnecessary cells that were later jettisoned (shrinkage), or specially designing Neanderthal’s even bigger brain and then killing him off?

As for sapiens brain, you have forgotten free will. God would not know just how we would use the bigger brain, so as above, it arrived oversized. Why would your natural mechanism arrive at oversize? Exuberance of growth? As for Neanderthal, God dos not kill, He allowed this side twig to die off by themselves as inadequate to proceed. Survival is guaranteed when necessary for His goal, us.

Survival

dhw: What was the point of his directly designing 99% of species that would take up all that room and would then have to be discarded, if the only line of descent he wanted to design was the 1% from bacteria to humans? Please stop dodging, and please either accept the bold or give us a logical reason why you reject it.

DAVID: Same old logical point: God chose to evolve us from bacteria, per logical Adler and me. My view is God guaranteed survival at each stage of evolution, so survival is not the driving force of evolution.

dhw: Your point is also that your God chose to evolve (= directly design) every other species from bacteria, including the 99% that had no connection with us. And what survival did God “guarantee”, since all organisms die, and 99% of his specially designed species have died out?

God guaranteed survival for those new steps required to reach the next necessary steps to reach His goal. The 99% gone were not wasted but necessary steps in any evolutio9ary mechanism used to produce new forms, a logic you remain blinded to.

dhw: Survival is not the driving force – the QUEST for survival is the driving force, and if God exists and if God really designs every single adaptation and innovation (which is pure theory), then even in your theory he designs them in order to enable organisms to fulfil the quest for survival. There is no conflict with Darwin’s theory. The conflict only arises when it comes to HOW the quest is fulfilled. You say through direct design by God, and Darwin says it’s through random mutations and natural selection – but leaves his options open as to the source of this mechanism.

The bold makes no sense, as the 'source' is natural random mutation and natural selection.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Friday, April 09, 2021, 15:49 (1322 days ago) @ dhw

DAVID: We agree brains enlarged. Your point is from need, but you have never explained why need produced more expansion than needed at the time point of expansion.

dhw: I don’t know how often you want me to repeat that the initial requirements did NOT produce more expansion than needed at the time! That makes no sense! The new requirements would have triggered the expansion needed for their fulfilment and no more than that. From then on, either there was stasis (no more special requirements) or additional requirements could be dealt with by complexification until more cells were needed. That would explain erectus’s expansion, but as sapiens could not expand any more, the brain’s powers of complexification took over. And complexification proved so efficient that previously essential cells were no longer needed (shrinkage).

The bold is not a fact but your repeated theory. The shrinkage makes the point that God gave us a brain sufficient for all future needs. If we added another 200 cc (as in our difference with erectus) we could easily handle the new hat size with our current structure. This directly relates to the language discussion below.


You have now kindly provided us with three articles, all of which confirm that earlier expansion took place in the same areas with the same functions as our own. I will edit the various quotes:

EDITED QUOTES: Cranio-cerebral topography reveals that the earliest members of the genus Homo had a primitive frontal lobe organization. […] Endocranial shape change associated with frontal lobe reorganization reveals differential expansion of the inferior prefrontal cortex and also of the posterior parietal and occipital cortex. (dhw’s bold)

QUOTE: In modern human brains, the inferior frontal lobe is an important neurofunctional substrate for advanced social cognition, toolmaking and tool use, and articulated language. We may thus ask whether its evolutionary reorganization around 1.7 to 1.5 Ma was accompanied by major changes in technocultural performance.

dhw: The answer is that they were, and any of these could have triggered the expansions.

Or the result of it. Still chicken or egg.


QUOTE: We hypothesize that this pattern reflects interdependent processes of brain-culture coevolution, where cultural innovation triggered changes in cortical interconnectivity and ultimately in external frontal lobe topography. [dhw’s bold] On the other hand, the cerebral innovations that characterize Homo at ~1.5 Ma might have constituted the foundations of the “language-ready” brain of later Homo species. [David’s bold]

dhw: You could hardly have a clearer confirmation of the process I have been describing. The brain did not expand or complexify in advance of innovation: the changes were triggered by innovation. And the brain changes would have progressively led to the language-ready brain – not just of sapiens but of earlier homos, as confirmed here:

But you skip over the language ready comment, my bold which makes my point


QUOTE: "Terrence Deacon proposed that the frontal lobe is the developmental and cognitive key to human language ability. If so, frontal lobe expansion implies that hominid language abilities may be quite old, perhaps predating the toolmaking abilities that appear in stone artifacts at least 2.4 million years old.

The bold in this quote again supports my point, enlarged and complex, but waiting to be used.

Please note the expansion of the frontal lobe in hominids. (Continued in Part Two)

Evolution: more genomic evidence of pre-planning Part One

by dhw, Saturday, April 10, 2021, 16:55 (1321 days ago) @ David Turell

This thread is getting overloaded, and I’ll try to condense it eventually!

DAVID: We agree brains enlarged. Your point is from need, but you have never explained why need produced more expansion than needed at the time point of expansion.

dhw: I don’t know how often you want me to repeat that the initial requirements did NOT produce more expansion than needed at the time! That makes no sense! The new requirements would have triggered the expansion needed for their fulfilment and no more than that. From then on, either there was stasis (no more special requirements) or additional requirements could be dealt with by complexification until more cells were needed. That would explain erectus’s expansion, but as sapiens could not expand any more, the brain’s powers of complexification took over. And complexification proved so efficient that previously essential cells were no longer needed (shrinkage).

DAVID: The bold is not a fact but your repeated theory. The shrinkage makes the point that God gave us a brain sufficient for all future needs. If we added another 200 cc (as in our difference with erectus) we could easily handle the new hat size with our current structure. This directly relates to the language discussion below.

Yes, it is a theory. Nobody knows the facts. But we know that the brain did not expand any more, and complexification took over. What is your explanation? The shrinkage makes the point that after complexification, certain cells became redundant. According to you, your God gave us a brain that was MORE than sufficient for our needs! Why? Yes, we could handle the new hat size, so it makes perfect sense that the now missing cells were necessary when they were first added, and the skull and the rest of our anatomy had adapted to the new size.

dhw: You have now kindly provided us with three articles, all of which confirm that earlier expansion took place in the same areas with the same functions as our own. I will edit the various quotes:

EDITED QUOTES: Cranio-cerebral topography reveals that the earliest members of the genus Homo had a primitive frontal lobe organization. […] Endocranial shape change associated with frontal lobe reorganization reveals differential expansion of the inferior prefrontal cortex and also of the posterior parietal and occipital cortex. (dhw’s bold)

QUOTE: In modern human brains, the inferior frontal lobe is an important neurofunctional substrate for advanced social cognition, toolmaking and tool use, and articulated language. We may thus ask whether its evolutionary reorganization around 1.7 to 1.5 Ma was accompanied by major changes in technocultural performance.

dhw: The answer is that they were, and any of these could have triggered the expansions.

DAVID: Or the result of it. Still chicken or egg.

Correct. Nobody knows, and that is why we have all the different theories. That is why I am testing my own against the findings of all these professionals. So far it has passed with flying colours.

QUOTE: We hypothesize that this pattern reflects interdependent processes of brain-culture coevolution, where cultural innovation triggered changes in cortical interconnectivity and ultimately in external frontal lobe topography. [dhw’s bold] On the other hand, the cerebral innovations that characterize Homo at ~1.5 Ma might have constituted the foundations of the “language-ready” brain of later Homo species. [David’s bold]

dhw: You could hardly have a clearer confirmation of the process I have been describing. The brain did not expand or complexify in advance of innovation: the changes were triggered by innovation. And the brain changes would have progressively led to the language-ready brain – not just of sapiens but of earlier homos, as confirmed here:

DAVID: But you skip over the language ready comment, my bold which makes my point.

Your point has always been that major changes were necessary to mouth, lips, larynx and the vocal organs to allow for sapiens speech. The bold emphasizes that 1.5 million years ago the cerebral innovations might have constituted the foundations of our language-ready brain. In other words, there was no great leap from zilch to sapiens speech, but a gradual refinement of existing structures.

QUOTE: "Terrence Deacon proposed that the frontal lobe is the developmental and cognitive key to human language ability. If so, frontal lobe expansion implies that hominid language abilities may be quite old, perhaps predating the toolmaking abilities that appear in stone artifacts at least 2.4 million years old.

DAVID: The bold in this quote again supports my point, enlarged and complex, but waiting to be used.

They were NOT as enlarged and as complex as ours – they laid the foundations! Please read the articles you quote: “Increases in the frontal lobe appear in Australopithecus africanus and all subsequent hominid brains.” Africanus brain capacity was about 400-500 cc. Now all of a sudden you think the mechanism for sapiens language was waiting to be used!
(Continued in Part Two)

Evolution: more genomic evidence of pre-planning Part Two

by dhw, Saturday, April 10, 2021, 17:02 (1321 days ago) @ dhw

PART TWO

QUOTE: During this period, the cultures in Africa became more complex and diverse, as evidenced by the discovery of various types of stone tools. The researchers think that biological and cultural evolution are probably interdependent. "It is likely that the earliest forms of human language also developed during this period."

dhw: And so we appear to have a smooth development, with areas of the brain complexifying or expanding, as “triggered” by the innovations of the time. There is no mention of giant leaps or of excessive cells, and why should there be?

DAVID: You are reading Darwinist material which is what I am forced to present in these discussions. Other articles presented here discuss the known volume difference in Erectus and sapiens.

Why must you bring Darwin into it? Are you now telling us that the tools were not discovered, or that they did not coincide with changes to the brain? I’m not disagreeing about volume difference if the experts agree that erectus finished on an average 1200 cc and sapiens went up to an average of 1350 cc. But I will certainly dispute that this was a “huge” gap and therefore only God could have engineered it. Erectus remained erectus but managed an increase of 300 cc.

DAVID: You can't escape from the point that we've reached, why so much potential functionality from a small new need, much more than the new requirement should require, as shown by what happened much later after the recognized stasis period?

dhw: Nobody knows what the new requirements were for ANY of the brain expansions (I listed some, and so did the articles), but they were obviously NOT small. You keep assuming that the brain expanded excessively in anticipation of bigger requirements to come. Why do you find this more logical than the brain expanding to meet a current need, then complexifying or expanding to meet new needs?

DAVID: The brain itself would have to know in advance how to expand in size and wiring complexity to accommodate needed abstract thoughts for future designs. I cannot see a natural cause as you wish, God does it.

Yes, the cells that make up the brain would know when to add to their number in order to meet new requirements. The intelligence required to do this may well have been given to them by your God, just as you think he gave them the ability to complexify.

DAVID: As for sapiens brain, you have forgotten free will. God would not know just how we would use the bigger brain, so as above, it arrived oversized.

So God had no idea how many cells we would need in order to exercise our free will, and therefore gave us more than we needed. And this seems more likely to you than your God giving us a mechanism that would produce new cells when needed, and would discard cells when they were no longer needed.

The new article simply repeats the findings of the others:

QUOTE: "The scientists focused on the brain’s frontal lobes, which are linked with complex mental tasks such as toolmaking and language. Early Homo from Dmanisi and Africa still apparently retained a great ape–like organization of the frontal lobe 1.8 million years ago.

But the frontal lobe was there, and apparently there are human artefacts dating from back then. So here we have the primitive beginnings of expansion/complexification through a far smaller and simpler frontal lobe.

QUOTE: "Future research can investigate what evolutionary pressures might have driven the emergence of modern human–like brain organization. Ultimately such research could reveal how brain reorganization is related to the evolution of language and symbolic thought.

As I keep saying, nobody knows what new requirements caused the brain to keep expanding and/or reorganizing itself, but clearly the evolution of language and symbolic thought started with our early ancestors – there was no sudden leap.

DAVID: This article, like dhw, looks for natural pressures to force evolution. Note my bolds: language and symbolic thought took 245,000 years to appear after sapiens first arrived on Earth.

No they didn’t. You have missed the whole point of all the articles, which is that rudimentary forms of language and symbolic thought must have been present in our early ancestors. The frontal lobe (if we take that as the crucial area of the brain) gradually expanded and complexified, with an accompanying expansion and complexification of its products, as confirmed by the history of human artefacts, though there is a whole list of other possible causes. The sudden leap made by sapiens after 245,000 years of stasis was a number of new ideas and requirements, but instead of the brain expanding, it enhanced its ability to complexify. Erectus hung around for 2 million years, so I don’t know why you’re making such a fuss over 245,000. (See also the evolution of the eye under “Miscellany". I have also shifted "Survival" to that thread.)

Evolution: more genomic evidence of pre-planning Part Two

by David Turell @, Saturday, April 10, 2021, 19:32 (1321 days ago) @ dhw

PART TWO

dhw: Nobody knows what the new requirements were for ANY of the brain expansions (I listed some, and so did the articles), but they were obviously NOT small. You keep assuming that the brain expanded excessively in anticipation of bigger requirements to come. Why do you find this more logical than the brain expanding to meet a current need, then complexifying or expanding to meet new needs?

DAVID: The brain itself would have to know in advance how to expand in size and wiring complexity to accommodate needed abstract thoughts for future designs. I cannot see a natural cause as you wish, God does it.

dhw: Yes, the cells that make up the brain would know when to add to their number in order to meet new requirements. The intelligence required to do this may well have been given to them by your God, just as you think he gave them the ability to complexify.

You still haven't explained the overexpansion which resulted in 150 cc loss.


DAVID: As for sapiens brain, you have forgotten free will. God would not know just how we would use the bigger brain, so as above, it arrived oversized.

dhw: So God had no idea how many cells we would need in order to exercise our free will, and therefore gave us more than we needed. And this seems more likely to you than your God giving us a mechanism that would produce new cells when needed, and would discard cells when they were no longer needed.

Much more likely for my version of a God in control.


dhw: The new article simply repeats the findings of the others:

QUOTE: "Future research can investigate what evolutionary pressures might have driven the emergence of modern human–like brain organization. Ultimately such research could reveal how brain reorganization is related to the evolution of language and symbolic thought.

dhw: As I keep saying, nobody knows what new requirements caused the brain to keep expanding and/or reorganizing itself, but clearly the evolution of language and symbolic thought started with our early ancestors – there was no sudden leap.

And the future use already had changes well aforehand. God designs and plans for the future needs.


DAVID: This article, like dhw, looks for natural pressures to force evolution. Note my bolds: language and symbolic thought took 245,000 years to appear after sapiens first arrived on Earth.

dhw: No they didn’t. You have missed the whole point of all the articles, which is that rudimentary forms of language and symbolic thought must have been present in our early ancestors.

Of course they were in a small way in preparation for future massive use by a much bigger brain given to us by God.

dhw: The frontal lobe (if we take that as the crucial area of the brain) gradually expanded and complexified, with an accompanying expansion and complexification of its products, as confirmed by the history of human artefacts, though there is a whole list of other possible causes. The sudden leap made by sapiens after 245,000 years of stasis was a number of new ideas and requirements, but instead of the brain expanding, it enhanced its ability to complexify. Erectus hung around for 2 million years, so I don’t know why you’re making such a fuss over 245,000. (See also the evolution of the eye under “Miscellany". I have also shifted "Survival" to that thread.)

Same sidestep. We arrived with an extra 150 cc we eventually discarded. God giving us the extra cells allowed us the freedom to modify ourselves brain by our own wishes

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Saturday, April 10, 2021, 19:18 (1321 days ago) @ dhw

QUOTE: We hypothesize that this pattern reflects interdependent processes of brain-culture coevolution, where cultural innovation triggered changes in cortical interconnectivity and ultimately in external frontal lobe topography. [dhw’s bold] On the other hand, the cerebral innovations that characterize Homo at ~1.5 Ma might have constituted the foundations of the “language-ready” brain of later Homo species. [David’s bold]

dhw: You could hardly have a clearer confirmation of the process I have been describing. The brain did not expand or complexify in advance of innovation: the changes were triggered by innovation. And the brain changes would have progressively led to the language-ready brain – not just of sapiens but of earlier homos, as confirmed here:

DAVID: But you skip over the language ready comment, my bold which makes my point.

dhw: Your point has always been that major changes were necessary to mouth, lips, larynx and the vocal organs to allow for sapiens speech. The bold emphasizes that 1.5 million years ago the cerebral innovations might have constituted the foundations of our language-ready brain. In other words, there was no great leap from zilch to sapiens speech, but a gradual refinement of existing structures.

You cannot denigrate my point that the preparatory mechanism was in place 1.5 million years ago.


QUOTE: "Terrence Deacon proposed that the frontal lobe is the developmental and cognitive key to human language ability. If so, frontal lobe expansion implies that hominid language abilities may be quite old, perhaps predating the toolmaking abilities that appear in stone artifacts at least 2.4 million years old.

DAVID: The bold in this quote again supports my point, enlarged and complex, but waiting to be used.

dhw: They were NOT as enlarged and as complex as ours – they laid the foundations! Please read the articles you quote: “Increases in the frontal lobe appear in Australopithecus africanus and all subsequent hominid brains.” Africanus brain capacity was about 400-500 cc. Now all of a sudden you think the mechanism for sapiens language was waiting to be used!
(Continued in Part Two)

I know what I read and I am forced to reinterpret the Darwinian overlay. It is obvious there was early preparation.

Evolution: comb jelly neurons different from all others

by David Turell @, Saturday, April 10, 2021, 21:02 (1321 days ago) @ David Turell

Not convergent, totally different:

https://www.quantamagazine.org/comb-jelly-neurons-spark-evolution-debate-20150325

"According to traditional evolutionary biology, neurons evolved just once, hundreds of millions of years ago, likely after sea sponges branched off the evolutionary tree. But Moroz thinks it happened twice — once in ancestors of comb jellies, which split off at around the same time as sea sponges, and once in the animals that gave rise to jellyfish and all subsequent animals, including us. He cites as evidence the fact that comb jellies have a relatively alien neural system, employing different chemicals and architecture from our own. “When we look at the genome and other information, we see not only different grammar but a different alphabet,” Moroz said.

***

"But new support for Moroz’s idea comes from recent genetic work suggesting that comb jellies are ancient — the first group to branch off the animal family tree. If true, that would bolster the chance that they evolved neurons on their own.

"The debate has generated intense interest among evolutionary biologists. Moroz’s work does not only call into question the origins of the brain and the evolutionary history of animals. It also challenges the deeply entrenched idea that evolution progresses steadily forward, building up complexity over time.

***

"To make up for our inability to see into the past, scientists use the morphology (structure) and genetics of living animals to try to reconstruct the relationships of ancient ones. But in the case of comb jellies, the study of living animals presents serious challenges.

"Little is known about comb jellies’ basic biology. The animals are incredibly fragile, often falling to pieces once they’re caught in a net. And it’s difficult to raise them in captivity, making it nearly impossible to do the routine experiments that scientists might perform on other animals.

***

"Scientists hope that more data — including genomes of additional ctenophore species — will help resolve the deepest branches of the animal tree. And that, in turn, could have profound implications for our understanding of neurons and where they came from. “The branching order has a major influence on how we interpret the evolution of the nervous system,” said Gáspár Jékely, a biologist at the Max Planck Institute for Developmental Biology in Germany."

Comment: I've skipped all the confused discussion. This is an odd branch, not really c compatible with common descent.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Sunday, April 11, 2021, 13:45 (1320 days ago) @ David Turell

dhw: Your point has always been that major changes were necessary to mouth, lips, larynx and the vocal organs to allow for sapiens speech. The bold emphasizes that 1.5 million years ago the cerebral innovations might have constituted the foundations of our language-ready brain. In other words, there was no great leap from zilch to sapiens speech, but a gradual refinement of existing structures.

DAVID: You cannot denigrate my point that the preparatory mechanism was in place 1.5 million years ago.

Once again: Previously you insisted that there was a great leap from zilch to sapiens speech because God did a dabble (or preprogrammed) a huge increase in the size of the sapiens brain and, most notably, the frontal lobe. But the articles tell us that there was no great leap from erectus size to sapiens size, and there was no great leap from zilch to sapiens speech because our ancient ancestors would also have had their own form of language using their smaller frontal lobe. But the true absurdity of your idea that every innovation was a preparation for sapiens comes out most clearly in the example of the gar fish eye:

DAVID: It evolved thousands of generation earlier than needed, and that is not pre-planning?

dhw: You seem to think the only creature that found vision to be an advantage was H. sapiens! Do you honestly believe the gar fish didn’t use its eyes to see with?

DAVID: Of course they saw with a forerunner of the special mechanism we use.

So your God gave gar fish eyes in order that they could develop into human eyes? And gar fish and dinosaurs didn’t “need” them because only humans need eyes?

DAVID: The brain itself would have to know in advance how to expand in size and wiring complexity to accommodate needed abstract thoughts for future designs. I cannot see a natural cause as you wish, God does it.

dhw: Yes, the cells that make up the brain would know when to add to their number in order to meet new requirements. The intelligence required to do this may well have been given to them by your God, just as you think he gave them the ability to complexify.

DAVID: You still haven't explained the overexpansion which resulted in 150 cc loss.

I have now repeated countless times that there was no overexpansion! Sapiens would have needed all his 1350 cc to implement whatever may have been the new initial requirement. From then on, there were no new requirements his 1350 cc could not handle (no new developments = stasis) until 245,000 years later – peanuts compared to erectus’s 2 million years – new ideas would have required additional cells. But for some reason (potential anatomical problems?) the brain did not expand, and instead increased its ability to complexify. This proved so efficient that 150 cc of previously essential cells were no longer required and were therefore jettisoned (= shrinkage). I will repeat this theory once more below. Most of your post in fact goes on to repeat the same insistence that all innovations were preparation for sapiens, and God gave us an extra 150 cc which we didn’t need but which we needed so that we could learn to use the 1200 cc we needed!

Evolution: bacteria that don't evolve
dhw: new tools, structures etc. could not be created without new cells or new complexifications. You seem to think the brain’s ability to implement all the new ideas was ready and waiting for 245,000 years.

DAVID: But exactly for 245,000 years the cells were there to be used and weren't: so stasis!

Here is the repeat: I am proposing that the cells WERE used to maintain the status quo after the initial expansion. The status quo is stasis. But after 245,000 years, there were new ideas and requirements, and the 1350 cc were no longer enough, but the brain could not expand any further, and so instead the cells enhanced their ability to complexify. And….yawn!...this proved so efficient that 150 cc worth of previously essential cells were no longer required. Please explain why you continually ignore this proposal and why you think it is illogical.

dhw: But modern research has shown us that implementation CHANGES the brain. In taxi drivers it even expands part of the brain. The hippocampus had not already expanded 315,000 years ago in anticipation of the work it had to do.

DAVID: So God designed the hippocampus to have the ability to add extra cells solely for the purpose of adding additional memory capacity, not complex immaterial concepts which the existing extra cells elsewhere in the newly expanded frontal and prefrontal cortices provided for.

Yes, our existing cells can presumably complexify sufficiently to implement our immaterial concepts, but more cells were needed to accommodate memory. Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Sunday, April 11, 2021, 15:50 (1320 days ago) @ dhw

DAVID: You cannot denigrate my point that the preparatory mechanism was in place 1.5 million years ago.

dhw: But the true absurdity of your idea that every innovation was a preparation for sapiens comes out most clearly in the example of the gar fish eye:

DAVID: It evolved thousands of generation earlier than needed, and that is not pre-planning?

dhw: You seem to think the only creature that found vision to be an advantage was H. sapiens! Do you honestly believe the gar fish didn’t use its eyes to see with?

DAVID: Of course they saw with a forerunner of the special mechanism we use.

dhw: So your God gave gar fish eyes in order that they could develop into human eyes? And gar fish and dinosaurs didn’t “need” them because only humans need eyes?

The point of the gar fish article is the special pattern of nerve connection we share with them. Only some eyes/brains have it.


DAVID: The brain itself would have to know in advance how to expand in size and wiring complexity to accommodate needed abstract thoughts for future designs. I cannot see a natural cause as you wish, God does it.

DAVID: You still haven't explained the overexpansion which resulted in 150 cc loss.

dhw: I have now repeated countless times that there was no overexpansion! Sapiens would have needed all his 1350 cc to implement whatever may have been the new initial requirement. ... Most of your post in fact goes on to repeat the same insistence that all innovations were preparation for sapiens, and God gave us an extra 150 cc which we didn’t need but which we needed so that we could learn to use the 1200 cc we needed!

Overall volume is not the point. Look at the dramatic new size of the frontal areas in only sapiens and Neanderthal. That is selective growth which is the real aspect of this discussion, and I've pointedly raised it before, while you blithely worry about the size of the size jump. Yes, erectus grew their brain, but not as selectively as sapiens had happen.


Evolution: bacteria that don't evolve
dhw: new tools, structures etc. could not be created without new cells or new complexifications. You seem to think the brain’s ability to implement all the new ideas was ready and waiting for 245,000 years.

DAVID: But exactly for 245,000 years the cells were there to be used and weren't: so stasis!

dhw Here is the repeat: I am proposing that the cells WERE used to maintain the status quo after the initial expansion. The status quo is stasis. But after 245,000 years, there were new ideas and requirements, and the 1350 cc were no longer enough, but the brain could not expand any further, and so instead the cells enhanced their ability to complexify. And….yawn!...this proved so efficient that 150 cc worth of previously essential cells were no longer required. Please explain why you continually ignore this proposal and why you think it is illogical.

Please look at the volume growth in frontal areas and then discuss this point from that specific aspect.


dhw: But modern research has shown us that implementation CHANGES the brain. In taxi drivers it even expands part of the brain. The hippocampus had not already expanded 315,000 years ago in anticipation of the work it had to do.

DAVID: So God designed the hippocampus to have the ability to add extra cells solely for the purpose of adding additional memory capacity, not complex immaterial concepts which the existing extra cells elsewhere in the newly expanded frontal and prefrontal cortices provided for.

dhw: Yes, our existing cells can presumably complexify sufficiently to implement our immaterial concepts, but more cells were needed to accommodate memory. Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

They did expand under God's designs. The hippocampus has a special design for increasing memory capacity, while enough cells were given in the very enlarged frontal lobes to satisfy all future needs with less cells under complexification. Erectus did not have that frontal enlargement.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Monday, April 12, 2021, 11:12 (1319 days ago) @ David Turell

dhw: But the true absurdity of your idea that every innovation was a preparation for sapiens comes out most clearly in the example of the gar fish eye:

DAVID: It evolved thousands of generation earlier than needed, and that is not pre-planning?

dhw: You seem to think the only creature that found vision to be an advantage was H. sapiens! Do you honestly believe the gar fish didn’t use its eyes to see with?

DAVID: The point of the gar fish article is the special pattern of nerve connection we share with them. Only some eyes/brains have it.

So how does that come to mean that thousands of generations of these eyes were not “needed”?

DAVID: You still haven't explained the overexpansion which resulted in 150 cc loss.

dhw: I have now repeated countless times that there was no overexpansion! Sapiens would have needed all his 1350 cc to implement whatever may have been the new initial requirement. ... Most of your post in fact goes on to repeat the same insistence that all innovations were preparation for sapiens, and God gave us an extra 150 cc which we didn’t need but which we needed so that we could learn to use the 1200 cc we needed!

DAVID: Overall volume is not the point.

Then why do you go on and on about the overexpansion which resulted in 150cc loss? Whenever I answer your questions, you skip off to another track.

DAVID: Look at the dramatic new size of the frontal areas in only sapiens and Neanderthal. That is selective growth which is the real aspect of this discussion, and I've pointedly raised it before, while you blithely worry about the size of the size jump. Yes, erectus grew their brain, but not as selectively as sapiens had happen.

So please stop harping on about overexpansion. The expansion of the frontal lobe would have been caused by new requirements that involved that part of the brain. We don’t know what the requirements were, but clearly they involved some form of abstract thinking etc. (e.g. new designs, new social requirements…who knows?) What exactly are you trying to prove? I thought your point was that your God had given us all these extra frontal lobe cells before we needed them, i.e. in anticipation of future needs. And my proposal is that we got them because we needed them at the time, and after that there was a period when the new size of the frontal lobe coped with all requirements until 245,000 years later it would not have been able to cope, but instead of expanding it enhanced its ability to complexify, and this proved so efficient that 150 cc of previously essential cells were no longer needed. As usual, you have totally ignored this proposal. Here is an interesting website on the frontal lobe that also lays emphasis on complexification:

Frontal Lobe - Physiopedia

www.physio-pedia.com/Frontal_Lobe

QUOTE: For many years, many scientists thought that the frontal lobe was comparatively larger in humans than in other primates. They thought that this was an important feature of human evolution and was the main reason why human cognition is different from that of the other primates. This view has been challenged by research. Magnetic resonance imaging was used to find the volume of the frontal cortex in humans, all living ape species and several monkey species. The human frontal cortex is not relatively larger than the cortex in the other great apes, but it is relatively larger than the frontal cortex in the lesser apes and the monkeys[5]. However, what sets us apart from other mammals is not so much brain size but reorganization of our brains in terms of connectivity and neurotransmitter changes.

Your comments, please.

dhw:[referring to hippocampus expansion): Yes, our existing cells can presumably complexify sufficiently to implement our immaterial concepts, but more cells were needed to accommodate memory. Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

DAVID: They did expand under God's designs. The hippocampus has a special design for increasing memory capacity, while enough cells were given in the very enlarged frontal lobes to satisfy all future needs with less cells under complexification. Erectus did not have that frontal enlargement.

Every enlargement from preceding brains would have had a cause, but we don’t know what the causes were. That’s evolution for you. Thank you for confirming that the initial enlargement of the frontal lobes was adequate and clearly new requirements were met by enhanced complexification which was so efficient that certain cells became redundant. Only the hippocampus needed to expand. Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Monday, April 12, 2021, 16:22 (1319 days ago) @ dhw

DAVID: Look at the dramatic new size of the frontal areas in only sapiens and Neanderthal. That is selective growth which is the real aspect of this discussion, and I've pointedly raised it before, while you blithely worry about the size of the size jump. Yes, erectus grew their brain, but not as selectively as sapiens had happen.

dhw: I thought your point was that your God had given us all these extra frontal lobe cells before we needed them, i.e. in anticipation of future needs. And my proposal is that we got them because we needed them at the time, and after that there was a period when the new size of the frontal lobe coped with all requirements until 245,000 years later it would not have been able to cope, but instead of expanding it enhanced its ability to complexify, and this proved so efficient that 150 cc of previously essential cells were no longer needed. As usual, you have totally ignored this proposal. Here is an interesting website on the frontal lobe that also lays emphasis on complexification:

Frontal Lobe - Physiopedia

www.physio-pedia.com/Frontal_Lobe

QUOTE: For many years, many scientists thought that the frontal lobe was comparatively larger in humans than in other primates. They thought that this was an important feature of human evolution and was the main reason why human cognition is different from that of the other primates. This view has been challenged by research. Magnetic resonance imaging was used to find the volume of the frontal cortex in humans, all living ape species and several monkey species. The human frontal cortex is not relatively larger than the cortex in the other great apes, but it is relatively larger than the frontal cortex in the lesser apes and the monkeys[5]. However, what sets us apart from other mammals is not so much brain size but reorganization of our brains in terms of connectivity and neurotransmitter changes.
Your comments, please.

The bold is the key. Volume is not as important as organization of neuronal networks but also how the frontal lobes are differently organized by region:

https://carta.anthropogeny.org/moca/topics/frontal-lobe-size

The frontal lobe is defined as the portion of the brain anterior to the central sulcus. Absolutely, the size of the human frontal lobe is approximately 3-4 times that of great apes; however, information to date suggests that evolutionary increase in the relative size of the entire frontal lobe does not distinguish humans from apes. The frontal lobe does not show disproportionate volumetric increase in humans relative to great apes (Semendeferi and Damasio, 2000). Proportinately, the human frontal lobe occupies approximately 35-38.5% of the cerebral hemispheres, which does not fall discretely outside of the ranges found in all great ape species. (my bold)

Note my bold. Again it is organization of regions, not simple volume. Elephant brains are larger overall.


dhw:[referring to hippocampus expansion): Yes, our existing cells can presumably complexify sufficiently to implement our immaterial concepts, but more cells were needed to accommodate memory. Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

DAVID: They did expand under God's designs. The hippocampus has a special design for increasing memory capacity, while enough cells were given in the very enlarged frontal lobes to satisfy all future needs with less cells under complexification. Erectus did not have that frontal enlargement.

dhw: Every enlargement from preceding brains would have had a cause, but we don’t know what the causes were. That’s evolution for you. Thank you for confirming that the initial enlargement of the frontal lobes was adequate and clearly new requirements were met by enhanced complexification which was so efficient that certain cells became redundant. Only the hippocampus needed to expand. Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

Stated many times: Without a God your ideas are reasonable. But I have God.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Tuesday, April 13, 2021, 11:31 (1318 days ago) @ David Turell

DAVID (Saturday April 10 at 19:32): You still haven't explained the overexpansion which resulted in 150 cc loss.

For months you have been on and on about the huge leap in the size of the brain, with overexpansion and then shrinkage in size. For weeks and weeks I have been arguing that the leap was not huge and there was no overexpansion, because the cells were needed from the start, and when there were new requirements, complexification took over. You then narrowed the focus to the frontal lobe, but continued to emphasize the increase in size: (All to be found in your post of April 10):
DAVID: Of course they [rudimentary forms of language] were in a small way in preparation for future massive use by a much bigger brain given to us by God.

DAVID: We arrived with an extra 150 cc we eventually discarded. God giving us the extra cells allowed us the freedom to modify ourselves brain by our own wishes

DAVID: Look at the dramatic new size of the frontal areas in only sapiens and Neanderthal.

My response was as follows: […] "my proposal is that we got them because we needed them at the time, and after that there was a period when the new size of the frontal lobe coped with all requirements until 245,000 years later it would not have been able to cope, but instead of expanding it enhanced its ability to complexify, and this proved so efficient that 150 cc of previously essential cells were no longer needed. As usual, you have totally ignored this proposal. Here is an interesting website on the frontal lobe that also lays emphasis on complexification:

Frontal Lobe - Physiopedia
www.physio-pedia.com/Frontal_Lobe
QUOTE: […] The human frontal cortex is not relatively larger than the cortex in the other great apes, but it is relatively larger than the frontal cortex in the lesser apes and the monkeys. However, what sets us apart from other mammals is not so much brain size but reorganization of our brains in terms of connectivity and neurotransmitter changes.
Your comments, please.

DAVID: The bold is the key. Volume is not as important as organization of neuronal networks but also how the frontal lobes are differently organized by region.

Precisely. Connectivity, neurotransmitter changes, organization of neuronal networks can all be summed up as complexification. So do please stop harping on about brain size and overexpansion. Your next quote seems to me irrelevant as well as being sheer muddle:

https://carta.anthropogeny.org/moca/topics/frontal-lobe-size
The frontal lobe is defined as the portion of the brain anterior to the central sulcus. Absolutely,the size of the human frontal lobe is approximately 3-4 times that of great apes bb; however, information to date suggests that evolutionary increase in the relative size of the entire frontal lobe does not distinguish humans from apes. The frontal lobe does not show disproportionate volumetric increase in humans relative to great apes (Semendeferi and Damasio, 2000). Proportinately, the human frontal lobe occupies approximately 35-38.5% of the cerebral hemispheres, which does not fall discretely outside of the ranges found in all great ape species. (DAVID’s bold)

DAVID: Note my bold. Again it is organization of regions, not simple volume. Elephant brains are larger overall.

What is there to note? Our frontal lobe is 3-4 bigger than that of great apes, but the relative size does not distinguish us from apes! Confused? Nothing there about organization of regions, but yes, I agree with you, and am pleased to see that you have dropped your focus on size. All the regions would presumably have expanded in earlier times, according to needs (we can’t simply ignore the fact that ALL brains have expanded), but the crucial factor for sapiens’ brain has been its enhanced ability to complexify – see the bold in my quote above.

dhw: Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

DAVID: Stated many times: Without a God your ideas are reasonable. But I have God.

Stated many times: my proposal includes the possibility that your God designed the whole system. It is therefore ”reasonable” to propose that the system itself works through the intelligence of cells that have the ability to RESPOND to new ideas. conditions etc. by either expanding or complexifying. Nothing is proven, but I would suggest that our knowledge of how the modern brain works makes this theory considerably more likely than the theory that your God kept expanding brains for no particular reason other than to prepare them for ideas and conditions which might arise in the future.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Tuesday, April 13, 2021, 15:20 (1318 days ago) @ dhw

DAVID: The bold is the key. Volume is not as important as organization of neuronal networks but also how the frontal lobes are differently organized by region.

dhw: Precisely. Connectivity, neurotransmitter changes, organization of neuronal networks can all be summed up as complexification. So do please stop harping on about brain size and overexpansion. Your next quote seems to me irrelevant as well as being sheer muddle:

https://carta.anthropogeny.org/moca/topics/frontal-lobe-size
The frontal lobe is defined as the portion of the brain anterior to the central sulcus. Absolutely,the size of the human frontal lobe is approximately 3-4 times that of great apes bb; however, information to date suggests that evolutionary increase in the relative size of the entire frontal lobe does not distinguish humans from apes. The frontal lobe does not show disproportionate volumetric increase in humans relative to great apes (Semendeferi and Damasio, 2000). Proportinately, the human frontal lobe occupies approximately 35-38.5% of the cerebral hemispheres, which does not fall discretely outside of the ranges found in all great ape species. (DAVID’s bold)

DAVID: Note my bold. Again it is organization of regions, not simple volume. Elephant brains are larger overall.

dhw: What is there to note? Our frontal lobe is 3-4 bigger than that of great apes, but the relative size does not distinguish us from apes! Confused? Nothing there about organization of regions, but yes, I agree with you, and am pleased to see that you have dropped your focus on size. All the regions would presumably have expanded in earlier times, according to needs (we can’t simply ignore the fact that ALL brains have expanded), but the crucial factor for sapiens’ brain has been its enhanced ability to complexify – see the bold in my quote above.

I discussed organization and complexity in the recent past as the major differences, not the volume. I wish I knew where. From memory your responses did not seem to lead us to this present discussion.


dhw: Now please explain why you continue to ignore the fact that we know the brain RESPONDS to new ideas by complexifying or, in one case, expanding. Why do you find it impossible to believe that past brains responded in the same way?

DAVID: Stated many times: Without a God your ideas are reasonable. But I have God.

dhw: Stated many times: my proposal includes the possibility that your God designed the whole system. It is therefore ”reasonable” to propose that the system itself works through the intelligence of cells that have the ability to RESPOND to new ideas. conditions etc. by either expanding or complexifying. Nothing is proven, but I would suggest that our knowledge of how the modern brain works makes this theory considerably more likely than the theory that your God kept expanding brains for no particular reason other than to prepare them for ideas and conditions which might arise in the future.

The bold makes no sense. Our highly used brain shrank 150 cc while complexifying. It was enlarged far in advance of its current use, that is history you distort.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Wednesday, April 14, 2021, 14:14 (1317 days ago) @ David Turell

DAVID: The bold is the key. Volume is not as important as organization of neuronal networks but also how the frontal lobes are differently organized by region.

dhw: Precisely. Connectivity, neurotransmitter changes, organization of neuronal networks can all be summed up as complexification. So do please stop harping on about brain size and overexpansion.

DAVID: I discussed organization and complexity in the recent past as the major differences, not the volume. I wish I knew where. From memory your responses did not seem to lead us to this present discussion.

Last week, you wrote that my theory did not answer “why the enlargement had to include a huge expansion of 200 cc in the mostly unused prefrontal and frontal conceptual areas”. I asked “how huge is huge?” and referred you to three websites which showed that the expansion was not huge, and I asked you to stop harping on about a huge leap. But on you went about size: “Your total dismissal of the huge 20% expansion from erectus….” And “You won’t admit it is over-expansion.” I asked you again to stop harping on about size. You wrote: “I’ll harp as much as I can. You have offered no real proof of your position about size while studiously ignoring function.” I replied, as I do now: “You keep dodging from size to function. I’ll deal with function later. My point here is that there is no huge leap in size.” You even accused me of fiddling the figures. We then moved on to function again.

dhw: Stated many times: my proposal includes the possibility that your God designed the whole system. It is therefore ”reasonable” to propose that the system itself works through the intelligence of cells that have the ability to RESPOND to new ideas. conditions etc. by either expanding or complexifying. Nothing is proven, but I would suggest that our knowledge of how the modern brain works makes this theory considerably more likely than the theory that your God kept expanding brains for no particular reason other than to prepare them for ideas and conditions which might arise in the future.

DAVID: The bold makes no sense. Our highly used brain shrank 150 cc while complexifying. It was enlarged far in advance of its current use, that is history you distort.

And so yet again you go back to size, and yet again you ignore my interpretation of history, which means that yet again I must repeat it. The initial expansion to 1350cc would have been the result of fulfilling a new requirement (e.g. new ideas, tools, weapons, environmental conditions, discoveries, social changes). From that moment on, 1350cc were all in use, and through complexification met all requirements (just like all their antecedents) until, perhaps 245,000 years later – peanuts compared to erectus’s 2 million years – more new requirements arose which previously would have required further expansion. But the brain did not expand (perhaps because further expansion might have caused anatomical problems), and so instead it enhanced its capacity for complexification. This proved so efficient that 150cc of cells which previously had been essential were no longer needed. Now please tell me why this makes no sense to you.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Wednesday, April 14, 2021, 19:10 (1317 days ago) @ dhw

DAVID: I discussed organization and complexity in the recent past as the major differences, not the volume. I wish I knew where. From memory your responses did not seem to lead us to this present discussion.

dhw: Last week, you wrote that my theory did not answer “why the enlargement had to include a huge expansion of 200 cc in the mostly unused prefrontal and frontal conceptual areas”. I asked “how huge is huge?” and referred you to three websites which showed that the expansion was not huge, and I asked you to stop harping on about a huge leap. But on you went about size: “Your total dismissal of the huge 20% expansion from erectus….” And “You won’t admit it is over-expansion.” I asked you again to stop harping on about size. You wrote: “I’ll harp as much as I can. You have offered no real proof of your position about size while studiously ignoring function.” I replied, as I do now: “You keep dodging from size to function. I’ll deal with function later. My point here is that there is no huge leap in size.” You even accused me of fiddling the figures. We then moved on to function again.

Thanks for clarifying. Size is an issue but function is more important in the newly enlarged areas.


dhw: Stated many times: my proposal includes the possibility that your God designed the whole system. It is therefore ”reasonable” to propose that the system itself works through the intelligence of cells that have the ability to RESPOND to new ideas. conditions etc. by either expanding or complexifying. Nothing is proven, but I would suggest that our knowledge of how the modern brain works makes this theory considerably more likely than the theory that your God kept expanding brains for no particular reason other than to prepare them for ideas and conditions which might arise in the future.

DAVID: The bold makes no sense. Our highly used brain shrank 150 cc while complexifying. It was enlarged far in advance of its current use, that is history you distort.

dhw: And so yet again you go back to size, and yet again you ignore my interpretation of history, which means that yet again I must repeat it. The initial expansion to 1350cc would have been the result of fulfilling a new requirement (e.g. new ideas, tools, weapons, environmental conditions, discoveries, social changes). From that moment on, 1350cc were all in use, and through complexification met all requirements (just like all their antecedents) until, perhaps 245,000 years later – peanuts compared to erectus’s 2 million years – more new requirements arose which previously would have required further expansion. But the brain did not expand (perhaps because further expansion might have caused anatomical problems), and so instead it enhanced its capacity for complexification. This proved so efficient that 150cc of cells which previously had been essential were no longer needed. Now please tell me why this makes no sense to you.

Size, complexity and new functions are all part of our discussion. The bold makes no sense to me. It doesn't explain at all the shrinkage of 150 cc later on in homo history and simply implies the brain was oversized for current use when sapiens appeared. Why would your supposed intelligent neurons make too many cells at first? They hoped complexification would get rid of the excess? I have presumed in this discussion your intelligent cells know how to think and design for the future. I know my God can. I view additional complexity provided better function over time as my God planned. As for your nonsense about anatomical enlargement of the skull, six ounces of brain expansion in the somewhat globular skull would hardly add to hat sizes. Neanderthals handled their bigger brain easily,.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Thursday, April 15, 2021, 10:49 (1316 days ago) @ David Turell

dhw: […] my proposal includes the possibility that your God designed the whole system It is therefore ”reasonable” to propose that the system itself works through the intelligence of cells that have the ability to RESPOND to new ideas. conditions etc. by either expanding or complexifying. Nothing is proven, but I would suggest that our knowledge of how the modern brain works makes this theory considerably more likely than the theory that your God kept expanding brains for no particular reason other than to prepare them for ideas and conditions which might arise in the future.

DAVID: The bold makes no sense. Our highly used brain shrank 150 cc while complexifying. It was enlarged far in advance of its current use, that is history you distort.

dhw: And so yet again you go back to size, and yet again you ignore my interpretation of history, which means that yet again I must repeat it. The initial expansion to 1350cc would have been the result of fulfilling a new requirement (e.g. new ideas, tools, weapons, environmental conditions, discoveries, social changes). From that moment on, 1350cc were all in use, and through complexification met all requirements (just like all their antecedents) until, perhaps 245,000 years later – peanuts compared to erectus’s 2 million years – more new requirements arose which previously would have required further expansion. But the brain did not expand (perhaps because further expansion might have caused anatomical problems), and so instead it enhanced its capacity for complexification. This proved so efficient that 150cc of cells which previously had been essential were no longer needed. Now please tell me why this makes no sense to you.

DAVID: Size, complexity and new functions are all part of our discussion. The bold makes no sense to me. It doesn't explain at all the shrinkage of 150 cc later on in homo history and simply implies the brain was oversized for current use when sapiens appeared.

I really don’t know how else I can phrase the bold, but perhaps if I put it in block capitals it will finally register. Step One: WHEN SAPIENS APPEARED, THE 1350cc WERE NEEDED. THE BRAIN WAS NOT OVERSIZED. Step two: ALL 1350 cc WERE USED TO MEET ALL REQUIREMENTS UNTIL – YOUR FIGURES – 245,000 YEARS LATER. Step 3: THE NEW REQUIREMENTS WOULD THEN HAVE REQUIRED FURTHER EXPANSION, BUT THE BRAIN DID NOT EXPAND. INSTEAD THERE WAS ENHANCED COMPLEXIFICATION. Step 4: ENHANCED COMPLEXIFICATION PROVED SO EFFICIENT THAT 150cc OF PREVIOUSLY ESSENTIAL CELLS WERE NO LONGER NEEDED, AND SO THEY WERE DISCARDED. HENCE SHRINKAGE.

DAVID: As for your nonsense about anatomical enlargement of the skull, six ounces of brain expansion in the somewhat globular skull would hardly add to hat sizes. Neanderthals handled their bigger brain easily.

We have no idea how much expansion beyond 1350cc the new factors would have required. Neanderthal brain shape and general anatomy were different from ours.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Thursday, April 15, 2021, 18:48 (1316 days ago) @ dhw

DAVID: Size, complexity and new functions are all part of our discussion. The bold makes no sense to me. It doesn't explain at all the shrinkage of 150 cc later on in homo history and simply implies the brain was oversized for current use when sapiens appeared.

dhw: I really don’t know how else I can phrase the bold, but perhaps if I put it in block capitals it will finally register. Step One: WHEN SAPIENS APPEARED, THE 1350cc WERE NEEDED. THE BRAIN WAS NOT OVERSIZED. Step two: ALL 1350 cc WERE USED TO MEET ALL REQUIREMENTS UNTIL – YOUR FIGURES – 245,000 YEARS LATER. Step 3: THE NEW REQUIREMENTS WOULD THEN HAVE REQUIRED FURTHER EXPANSION, BUT THE BRAIN DID NOT EXPAND. INSTEAD THERE WAS ENHANCED COMPLEXIFICATION. Step 4: ENHANCED COMPLEXIFICATION PROVED SO EFFICIENT THAT 150cc OF PREVIOUSLY ESSENTIAL CELLS WERE NO LONGER NEEDED, AND SO THEY WERE DISCARDED. HENCE SHRINKAGE.

I fully understand your approach and fully reject it, no matter the size of the lettering. Your declaration that a total of 1350 cc were absolutely needed over 300,000 years ago is simply your belief, without any proof. My proof that it was oversized is shown by the shrinkage later on just as you describe by enhanced complexification using and also discarding the excess neurons under very complex uses of our big brain we discovered how to employ. Why were excess neurons there in the first place if they could be discarded later under much heavier use of the brain? You just don't like my point that God enlarged the brain in anticipation of future use.

Evolution: special design of a very long neck

by David Turell @, Thursday, April 15, 2021, 19:53 (1316 days ago) @ David Turell

A dinosaur beats giraffes in neck size with very special vertebrae:

https://www.sciencedaily.com/releases/2021/04/210414113508.htm

"Little is known about azhdarchid pterosaurs, gigantic flying reptiles with impressive wingspans of up to 12 meters. Cousins of dinosaurs and the largest animals ever to fly, they first appeared in the fossil record in the Late Triassic about 225 million years ago and disappeared again at the end of the Cretaceous period about 66 million years ago. One of their most notable features for such a large flighted animal was a neck longer than that of a giraffe. Now, researchers report an unexpected discovery in the journal iScience on April 14: their thin neck vertebrae got their strength from an intricate internal structure unlike anything that's been seen before.

"'One of our most important findings is the arrangement of cross-struts within the vertebral centrum," says Dave Martill of the University of Portsmouth, UK. "It is unlike anything seen previously in a vertebra of any animal. The neural tube is placed centrally within the vertebra and is connected to the external wall via a number of thin rod-like trabeculae, radially arranged like the spokes of a bicycle wheel and helically arranged along the length of the vertebra. They even cross over like the spokes of a bicycle wheel. Evolution shaped these creatures into awesome, breathtakingly efficient flyers."

***

"His team realized immediately that they needed to bring in engineers to understand how the biomechanics of this unusual neck would have worked. Those analyses suggest that as few as 50 of the spoke-like trabeculae increased the amount of weight their necks could carry without buckling by 90%. Together with the basic tube-within-a-tube structure, it explains how the relatively light-weight animals could capture and carry heavy prey items without breaking their necks.

"'It appears that this structure of extremely thin cervical vertebrae and added helically arranged cross-struts resolved many concerns about the biomechanics of how these creatures were able to support massive heads -- longer than 1.5 meters -- on necks longer than the modern-day giraffe, all whilst retaining the ability of powered flight," Martill says

"While pterosaurs are sometimes thought of as evolutionary dead ends, Martill and colleagues say the new findings reveal them as "fantastically complex and sophisticated." Their bones and skeletons were marvels of biology -- extremely light yet strong and durable."

Comment: In my view very careful exacting design was required before this strange creature could take to the skies. Did not appear by Darwinian stepwise evolution.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Friday, April 16, 2021, 11:54 (1315 days ago) @ David Turell

DAVID: Size, complexity and new functions are all part of our discussion. The bold makes no sense to me. It doesn't explain at all the shrinkage of 150 cc later on in homo history and simply implies the brain was oversized for current use when sapiens appeared.

dhw: I really don’t know how else I can phrase the bold, but perhaps if I put it in block capitals it will finally register. Step One: WHEN SAPIENS APPEARED, THE 1350cc WERE NEEDED. THE BRAIN WAS NOT OVERSIZED. Step two: ALL 1350 cc WERE USED TO MEET ALL REQUIREMENTS UNTIL – YOUR FIGURES – 245,000 YEARS LATER. Step 3: THE NEW REQUIREMENTS WOULD THEN HAVE REQUIRED FURTHER EXPANSION, BUT THE BRAIN DID NOT EXPAND. INSTEAD THERE WAS ENHANCED COMPLEXIFICATION. Step 4: ENHANCED COMPLEXIFICATION PROVED SO EFFICIENT THAT 150cc OF PREVIOUSLY ESSENTIAL CELLS WERE NO LONGER NEEDED, AND SO THEY WERE DISCARDED. HENCE SHRINKAGE.

DAVID: I fully understand your approach and fully reject it, no matter the size of the lettering. Your declaration that a total of 1350 cc were absolutely needed over 300,000 years ago is simply your belief, without any proof.

The same applies to your own theory. However, we should not ignore the fact that we do have evidence in the modern brain, which changes IN RESPONSE to new requirements, not in anticipation of them. It is therefore not unreasonable to assume that the process was the same in the past. This would mean that when pre-sapiens brain expanded to sapiens size (1350cc), it was IN RESPONSE to new requirements – otherwise there would have been no expansion. And in that case, the new cells were necessary to fulfil the new need – they were NOT excessive.

DAVID: My proof that it was oversized is shown by the shrinkage later on just as you describe by enhanced complexification using and also discarding the excess neurons under very complex uses of our big brain we discovered how to employ. Why were excess neurons there in the first place if they could be discarded later under much heavier use of the brain?

It is not proof! You devoted a whole thread to the concept of lost genes coinciding with innovation: the principle is the same. Cells are needed, but when a new mechanism takes over, they become unnecessary. In this case, enhanced complexity made expansion unnecessary and made some of the existing cells unnecessary. The neurons were NOT “excess” until enhanced complexification made them redundant. I do not ask you to believe the theory, but I do ask you for a logical reason for rejecting it. You have not yet offered me a single one.

DAVID: You just don't like my point that God enlarged the brain in anticipation of future use.

True. It goes against what we know of the modern brain, and I find it far more logical to assume that any changes in the brain and in the anatomy would have an immediate cause, as opposed to being preprogrammed 3.8 billion years ago or being the result of your God performing a series of operations (dabbling) in anticipation of some future need. In this respect, our prime example was your insistence that he replaced the legs of pre-whales with flippers BEFORE they entered the water. And yet you accept that organisms RESPOND to new conditions by adapting themselves!

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Friday, April 16, 2021, 22:15 (1315 days ago) @ dhw

DAVID: I fully understand your approach and fully reject it, no matter the size of the lettering. Your declaration that a total of 1350 cc were absolutely needed over 300,000 years ago is simply your belief, without any proof.

dhw: The same applies to your own theory. However, we should not ignore the fact that we do have evidence in the modern brain, which changes IN RESPONSE to new requirements, not in anticipation of them. It is therefore not unreasonable to assume that the process was the same in the past. This would mean that when pre-sapiens brain expanded to sapiens size (1350cc), it was IN RESPONSE to new requirements – otherwise there would have been no expansion. And in that case, the new cells were necessary to fulfil the new need – they were NOT excessive.

I agree all previous brains had the same complexification capacity. I agree the new expansion covered the needs of that time. But saying not excessive in size or neuronal network complexity at that time is poor reasoning, when we find enormous new brain usages starting 250,000 years later in an unchanged brain waiting to be used


DAVID: My proof that it was oversized is shown by the shrinkage later on just as you describe by enhanced complexification using and also discarding the excess neurons under very complex uses of our big brain we discovered how to employ. Why were excess neurons there in the first place if they could be discarded later under much heavier use of the brain?

dhw: It is not proof! You devoted a whole thread to the concept of lost genes coinciding with innovation: the principle is the same.

You have just invented a curious non-comparison. Our fresh new brain had lots of new extra cells, never used until much later in specialized areas of the frontal and prefrontal lobes with intricate five special layers of neurons in a special tandem network. This allowed our new abstractions of thought that we are familiar with now.

dhw: Cells are needed, but when a new mechanism takes over, they become unnecessary. In this case, enhanced complexity made expansion unnecessary and made some of the existing cells unnecessary. The neurons were NOT “excess” until enhanced complexification made them redundant. I do not ask you to believe the theory, but I do ask you for a logical reason for rejecting it. You have not yet offered me a single one.

It is totally unreasonable. Many extra cells are many extra cells, no matter ow you try and twist it. The stasis until their use cannot be tossed away with by the contorted explanation you present. Thrown away extrav cells wsere extra cells from, the beginning


DAVID: You just don't like my point that God enlarged the brain in anticipation of future use.

dhw: True. It goes against what we know of the modern brain, and I find it far more logical to assume that any changes in the brain and in the anatomy would have an immediate cause, as opposed to being preprogrammed 3.8 billion years ago or being the result of your God performing a series of operations (dabbling) in anticipation of some future need. In this respect, our prime example was your insistence that he replaced the legs of pre-whales with flippers BEFORE they entered the water. And yet you accept that organisms RESPOND to new conditions by adapting themselves!

All we know, and you have used another distortion of our agreement on this, organisms have minor necessary epigenetic adaption but stay the same species. No one can identify how species appear. I say God does it by design.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Saturday, April 17, 2021, 11:41 (1314 days ago) @ David Turell

DAVID: I agree all previous brains had the same complexification capacity. I agree the new expansion covered the needs of that time. But saying not excessive in size or neuronal network complexity at that time is poor reasoning, when we find enormous new brain usages starting 250,000 years later in an unchanged brain waiting to be used.

Why have you suddenly added “excessive in neuronal complexity”? You have once again completely missed the point of my theory: Each expansion – including that of sapiens – was a REPONSE to a new need, and the new expansion then “covered the needs” of all brains, including sapiens, so long as complexification was able to do so. But 250,000 years after sapiens’ initial expansion, NEW REQUIREMENTS arose that could not be covered by existing complexification, and so the hitherto “unchanged brain” now had to change. This would normally have been by further expansion, but the brain did not expand. (I have offered a reason why: possible anatomical problems). Instead it enhanced its ability to complexify. And this proved so efficient that some of the cells that had been essential since the initial expansion were no longer needed – hence shrinkage.

DAVID: Our fresh new brain had lots of new extra cells, never used until much later in specialized areas of the frontal and prefrontal lobes with intricate five special layers of neurons in a special tandem network. This allowed our new abstractions of thought that we are familiar with now.

How on earth can you possibly know that the new extra cells – which I propose were NEEDED in order to meet the new requirements – were never used? What would have changed after 250,000 years was the manner in which the neurons combined to form new connections. You persist in ignoring the very clear statement I quoted earlier: “…what sets us apart from other mammals is not so much brain size but reorganization of our brains in terms of connectivity and neurotransmitter changes.” This is what would have happened when the existing extra (but NOT excessive) cells could no longer cope with the new requirements.

dhw: […] I do not ask you to believe the theory, but I do ask you for a logical reason for rejecting it. You have not yet offered me a single one.

DAVID: It is totally unreasonable. Many extra cells are many extra cells, no matter ow you try and twist it. The stasis until their use cannot be tossed away with by the contorted explanation you present. Thrown away extra cells were extra cells from, the beginning.

Yet again: in my theory the many extra cells were needed in order to meet whatever was the new requirement 315,000 years ago. If previous expansions, as you agree, “covered the needs of that time”, why on earth would you assume that our own expansion did NOT simply cover the needs of that time? You harp on about stasis, but stasis was always the case once the new requirements had been met. Our ancestors lived for hundreds of thousands of years with no further expansions. In our case no change was NEEDED until 250,000 years had passed. And so yet again, what logical objection can you have to the proposal that our extra cells WERE needed, were NOT excessive, and only become unnecessary when enhanced complexification had taken over?

DAVID: You just don't like my point that God enlarged the brain in anticipation of future use.

dhw: True. It goes against what we know of the modern brain, and I find it far more logical to assume that any changes in the brain and in the anatomy would have an immediate cause, as opposed to being preprogrammed 3.8 billion years ago or being the result of your God performing a series of operations (dabbling) in anticipation of some future need. In this respect, our prime example was your insistence that he replaced the legs of pre-whales with flippers BEFORE they entered the water. And yet you accept that organisms RESPOND to new conditions by adapting themselves!

DAVID: All we know, and you have used another distortion of our agreement on this, organisms have minor necessary epigenetic adaption but stay the same species. No one can identify how species appear. I say God does it by design.

If anyone could identify how species appear, we would not be having this discussion. There is no distortion: you have explicitly claimed that your God must have changed legs into flippers before pre-whales entered the water, just as you claim that your God must have operated on pre-sapiens brain before we actually needed the extra cells. I would regard both cases as major adaptations rather than innovations, but the distinction is irrelevant. My proposal is that evolutionary change comes about through responses to new requirements, not through anticipation of them. I am quite happy to don my theist’s hat in these discussions, because my theory allows for your God as the designer, but instead of designing every life form, econiche, strategy and natural wonder, he would have designed the mechanism which enabled organisms to do their own autonomous designing. And apart from repeating your own preconceptions, you still haven’t given me one logical reason for rejecting this proposal.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Saturday, April 17, 2021, 19:27 (1314 days ago) @ dhw

DAVID: I agree all previous brains had the same complexification capacity. I agree the new expansion covered the needs of that time. But saying not excessive in size or neuronal network complexity at that time is poor reasoning, when we find enormous new brain usages starting 250,000 years later in an unchanged brain waiting to be used.

dhw: the point of my theory: Each expansion – including that of sapiens – was a REPONSE to a new need, and the new expansion then “covered the needs” of all brains, including sapiens, so long as complexification was able to do so. But 250,000 years after sapiens’ initial expansion, NEW REQUIREMENTS arose that could not be covered by existing complexification, and so the hitherto “unchanged brain” now had to change.

DAVID: Our fresh new brain had lots of new extra cells, never used until much later in specialized areas of the frontal and prefrontal lobes with intricate five special layers of neurons in a special tandem network. This allowed our new abstractions of thought that we are familiar with now.

dhw: How on earth can you possibly know that the new extra cells – which I propose were NEEDED in order to meet the new requirements – were never used? What would have changed after 250,000 years was the manner in which the neurons combined to form new connections. You persist in ignoring the very clear statement I quoted earlier: “…what sets us apart from other mammals is not so much brain size but reorganization of our brains in terms of connectivity and neurotransmitter changes.” This is what would have happened when the existing extra (but NOT excessive) cells could no longer cope with the new requirements.

How do you know all those excess cells were needed at the time of sapiens appearance? Just because they were there? Apes, our ancestors, are not experiencing consciousness, but it had to appear in early hominin or later homo forms as the brain enlarged and became more complexly wired and arranged as we are in tiered neuron groups. That had to precede the development of language which allowed us to exchange complex abstractions which was followed by full use of the entire new brain form and loss of volume 150 cc and contained neuron networks. You can't realistically explain the excess brain in the beginning any other way.


dhw: […] I do not ask you to believe the theory, but I do ask you for a logical reason for rejecting it. You have not yet offered me a single one.

DAVID: It is totally unreasonable. Many extra cells are many extra cells, no matter ow you try and twist it. The stasis until their use cannot be tossed away with by the contorted explanation you present. Thrown away extra cells were extra cells from, the beginning.

dhw: Yet again: in my theory the many extra cells were needed in order to meet whatever was the new requirement 315,000 years ago. If previous expansions, as you agree, “covered the needs of that time”, why on earth would you assume that our own expansion did NOT simply cover the needs of that time? You harp on about stasis, but stasis was always the case once the new requirements had been met. Our ancestors lived for hundreds of thousands of years with no further expansions. In our case no change was NEEDED until 250,000 years had passed. And so yet again, what logical objection can you have to the proposal that our extra cells WERE needed, were NOT excessive, and only become unnecessary when enhanced complexification had taken over?

A lot of words that do not really explain the excess of cells in the beginning. You are simply assuming the neurons knew how to rearrange and rewire themselves as we left apedom.


DAVID: You just don't like my point that God enlarged the brain in anticipation of future use.

dhw: True.... And yet you accept that organisms RESPOND to new conditions by adapting themselves!

DAVID: All we know, and you have used another distortion of our agreement on this, organisms have minor necessary epigenetic adaption but stay the same species. No one can identify how species appear. I say God does it by design.

dhw: If anyone could identify how species appear, we would not be having this discussion...My proposal is that evolutionary change comes about through responses to new requirements, not through anticipation of them. I am quite happy to don my theist’s hat in these discussions, because my theory allows for your God as the designer, but instead of designing every life form, econiche, strategy and natural wonder, he would have designed the mechanism which enabled organisms to do their own autonomous designing. And apart from repeating your own preconceptions, you still haven’t given me one logical reason for rejecting this proposal.

My rejection is based on your humanized view of what God might do. While you are theorizing you can make God into anything you wish. You never bring up my view of God.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Sunday, April 18, 2021, 12:29 (1313 days ago) @ David Turell

DAVID: Our fresh new brain had lots of new extra cells, never used until much later in specialized areas of the frontal and prefrontal lobes with intricate five special layers of neurons in a special tandem network. This allowed our new abstractions of thought that we are familiar with now.

dhw: How on earth can you possibly know that the new extra cells – which I propose were NEEDED in order to meet the new requirements – were never used? What would have changed after 250,000 years was the manner in which the neurons combined to form new connections. You persist in ignoring the very clear statement I quoted earlier: “…what sets us apart from other mammals is not so much brain size but reorganization of our brains in terms of connectivity and neurotransmitter changes.” This is what would have happened when the existing extra (but NOT excessive) cells could no longer cope with the new requirements.

DAVID: How do you know all those excess cells were needed at the time of sapiens appearance? Just because they were there?

I’ve just asked you how you know they were NOT needed! This is the basic difference between our theories! You say the extra cells were given in anticipation of future use (though they turned out not to be needed), and I say they were added because they were needed at the time, and only became unnecessary when complexification made them redundant. The only clue we have is the way the modern brain works, which is by RESPONDING to new needs. It RESPONDS by complexifying, although the hippocampus has expanded. We do not know of any instance in which the brain complexifies/expands in anticipation of some unknown future requirement. Why do you continue to ignore this argument?

DAVID: Apes, our ancestors, are not experiencing consciousness...

Manifestly untrue. Do you really think that apes are machines which are totally unaware of their surroundings, of dangers, of their own needs? There are different forms and levels of consciousness!

DAVID: (...) but it had to appear in early hominin or later homo forms as the brain enlarged and became more complexly wired and arranged as we are in tiered neuron groups. That had to precede the development of language which allowed us to exchange complex abstractions which was followed by full use of the entire new brain form and loss of volume 150 cc and contained neuron networks. You can't realistically explain the excess brain in the beginning any other way.

You just keep repeating “excess”, but none of the general “history” you have presented means there was excess at any time, including our own until enhanced complexification took over from expansion, and then I propose that cells which had been essential in the past were no longer required. Even with your own theory, why would your all-knowing, always-in-control God give us excess cells which turn out to be redundant? […]

DAVID: […] You are simply assuming the neurons knew how to rearrange and rewire themselves as we left apedom.

I assume nothing. I offer a theory. And yes, I am proposing, as you well know, that cells are intelligent enough to know when they need reinforcements (expansion) or new connections and functions (complexification). This theory allows for the existence of your God as designer of cellular intelligence, as well as fitting in perfectly with the history of life in general and the brain in particular, which we know makes changes to itself IN RESPONSE to new requirements and not in anticipation of them (a point which you always ignore).

dhw: […] apart from repeating your own preconceptions, you still haven’t given me one logical reason for rejecting this proposal.

DAVID: My rejection is based on your humanized view of what God might do. While you are theorizing you can make God into anything you wish. You never bring up my view of God.

I have spent years discussing your view of God, whom you can make into anything you wish. Your own humanized view, give or take innumerable fluctuations and contradictions, appears to be that he started out with only one purpose (us), is always in control (except when he is not in control), specially designed every life form, econiche, strategy, natural wonder etc. (99% of which had no connection with humans), must have had good reasons for designing the bacteria and viruses that cause untold suffering and death, preprogrammed or dabbled every development – including our brain – in anticipation of what would one day be required, because he always knows what is coming, and enjoys creating but not in any way that we might be able to understand. Meanwhile, I offer alternative views, but you “never consider him experimenting” etc., and if you never consider alternatives, then apparently that means they must be wrong!

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Sunday, April 18, 2021, 16:08 (1313 days ago) @ dhw

DAVID: How do you know all those excess cells were needed at the time of sapiens appearance? Just because they were there?

dhw: I’ve just asked you how you know they were NOT needed! This is the basic difference between our theories! ... The only clue we have is the way the modern brain works, which is by RESPONDING to new needs. It RESPONDS by complexifying, although the hippocampus has expanded. We do not know of any instance in which the brain complexifies/expands in anticipation of some unknown future requirement. Why do you continue to ignore this argument?

The reason the brain complexifies is that it has extra neuron networks to work with. They are already present so as the brain develops more efficiency of thought a fairly large number can be discarded. I view the brain much as we might consider material transport: a model T cannot carry the same load as an 18-wheeler. This is why I raised the point that the initial lifestyle requirements for early sapiens hardly differed from erectus. The fact that the brain shrunk as it became more fully used, demonstrates design in preparation for future use. All you are proposing is all the new cells were required for what? Evidence it was for little new use at first and major use came later.


DAVID: (...) but it had to appear in early hominin or later homo forms as the brain enlarged and became more complexly wired and arranged as we are in tiered neuron groups. That had to precede the development of language which allowed us to exchange complex abstractions which was followed by full use of the entire new brain form and loss of volume 150 cc and contained neuron networks. You can't realistically explain the excess brain in the beginning any other way.

dhw: You just keep repeating “excess”, but none of the general “history” you have presented means there was excess at any time,

But 150 cc of excess were discarded.

dhw: including our own until enhanced complexification took over from expansion, and then I propose that cells which had been essential in the past were no longer required. Even with your own theory, why would your all-knowing, always-in-control God give us excess cells which turn out to be redundant? […]

The bold tells essential for what? We use our brain to live as best we can. We see the flow of hominin/homo lifestyle go from very simple to highly complex with each step of enlargement, and we find a very high degree of complexity in our brain that has no resemblance to other primates. (Note bold above) Five tiers of frontal lobe neurons, probably evolved from hominin to now with a last very giant sapiens step.


dhw: […] apart from repeating your own preconceptions, you still haven’t given me one logical reason for rejecting this proposal.

DAVID: My rejection is based on your humanized view of what God might do. While you are theorizing you can make God into anything you wish. You never bring up my view of God.

dhw: I have spent years discussing your view of God, whom you can make into anything you wish. Your own humanized view, give or take innumerable fluctuations and contradictions, appears to be that he started out with only one purpose (us), is always in control (except when he is not in control), specially designed every life form, econiche, strategy, natural wonder etc. (99% of which had no connection with humans), must have had good reasons for designing the bacteria and viruses that cause untold suffering and death, preprogrammed or dabbled every development – including our brain – in anticipation of what would one day be required, because he always knows what is coming, and enjoys creating but not in any way that we might be able to understand. Meanwhile, I offer alternative views, but you “never consider him experimenting” etc., and if you never consider alternatives, then apparently that means they must be wrong!

All of your alternatives present a very human God who thinks like you do. Experimenting as if he has no idea of what He wants. He is perfectly capable of planning exactly what He wants as is shown by the fine-tuned universe that allows life to appear when He designs it. Looks like perfect planning to me. In terms of performing creation, He never thinks as you do. His goals are always in sight.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Monday, April 19, 2021, 10:16 (1313 days ago) @ David Turell

dhw: […] The only clue we have is the way the modern brain works, which is by RESPONDING to new needs. It RESPONDS by complexifying, although the hippocampus has expanded. We do not know of any instance in which the brain complexifies/expands in anticipation of some unknown future requirement. Why do you continue to ignore this argument?

DAVID: The reason the brain complexifies is that it has extra neuron networks to work with....

Still totally ignoring the “response” evidence of how the brain works! The reason the brain complexifies, as we know from modern science, is that it has to adjust itself in order to meet new requirements. In former times, the ability to make these adjustments depended on two factors: the number of cells available, and their capacity for complexification (i.e. establishing new connections). Today it responds almost exclusively by complexifying.

DAVID: ...They are already present so as the brain develops more efficiency of thought a fairly large number can be discarded.

Yes, in sapiens’ case the cells are present, and as the ability to complexify is enhanced, some of the cells which I suggest had previously been essential can be discarded.

DAVID: I view the brain much as we might consider material transport: a model T cannot carry the same load as an 18-wheeler. This is why I raised the point that the initial lifestyle requirements for early sapiens hardly differed from erectus.

We don’t need your truck image. You simply keep ignoring the point that all lifestyles prior to late sapiens were based mainly on survival. Whatever new requirements arose (our list contained such causes as new tools, weapons, clothes, ideas, discoveries, environmental conditions, use of fire etc.) would have been devoted to improving chances of survival. The simple example I gave you was: the hunter with a brand new spear is still a hunter.

DAVID: The fact that the brain shrunk as it became more fully used, demonstrates design in preparation for future use. All you are proposing is all the new cells were required for what? Evidence it was for little new use at first and major use came later.

The fact that the brain shrunk indicates that some of the cells which had previously been essential (why else would they have been added to the quantity available?) were no longer needed once complexification had taken over. That is the difference between our theories: you have your God giving us extra cells to be used in the future, except that they were not needed in the future and were therefore discarded. I have additions being made only when essential, e.g. to implement the design, making and use of the spear, followed by period of stasis till next new requirement exceeds existing capacity (i.e. number of cells and ability to complexify).

dhw: Even with your own theory, why would your all-knowing, always-in-control God give us excess cells which turn out to be redundant? […]

DAVID: […] essential for what? We use our brain to live as best we can. We see the flow of hominin/homo lifestyle go from very simple to highly complex with each step of enlargement….

No we don’t. You’ve just said yourself that “the initial lifestyle requirements for early sapiens hardly differed from erectus”, and although undoubtedly the step from tree-dwelling to land-dwelling would have been a major development, the hunter with spear would have had the same lifestyle as the hunter without spear. I note your refusal to answer my question above.

DAVID…and we find a very high degree of complexity in our brain that has no resemblance to other primates. (Note bold above) Five tiers of frontal lobe neurons, probably evolved from hominin to now with a last very giant sapiens step.

Why do you keep repeating what we already know? The matter in dispute is how this very high degree evolved. You insist that your God kept operating on all the hominins and homos, enlarging their brains in anticipation of future needs, and in our case giving us excess cells we wouldn’t need in the future! I propose that expansions took place in response to needs at the time, and in our case enhanced complexification made some previously essential cells redundant. As far as your God’s role is concerned, you agree that he must have invented a mechanism for autonomous complexification (unless you believe he thinks all our thoughts for us), and we know that the modern brain only complexifies or expands (hippocampus) IN RESPONSE to new requirements. Autonomy is only possible if the cells themselves have the intelligence to know when they need to multiply/complexify, and your God’s role – if he exists – would have been to design the mechanism that gave them their intelligence.

dhw: […] apart from repeating your own preconceptions, you still haven’t given me one logical reason for rejecting this proposal.

DAVID: My rejection is based on your humanized view of what God might do. While you are theorizing you can make God into anything you wish. You never bring up my view of God.

I shan’t repeat the rest of the discussion, in which for the umpteenth time I summarized your own humanized view of God, whom you can “make into anything you wish”. It is covered again under “theodicy”, and it does not provide one single logical reason for rejecting my theory concerning the expansion and complexification of the brain!

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Monday, April 19, 2021, 15:15 (1312 days ago) @ dhw

DAVID: The reason the brain complexifies is that it has extra neuron networks to work with....

dhw: Still totally ignoring the “response” evidence of how the brain works! The reason the brain complexifies, as we know from modern science, is that it has to adjust itself in order to meet new requirements.

Not ignoring, but different interpretation: the extra cells allow a greater degree of complexity by having more neurons to work with from the start.

DAVID: I view the brain much as we might consider material transport: a model T cannot carry the same load as an 18-wheeler. This is why I raised the point that the initial lifestyle requirements for early sapiens hardly differed from erectus.

dhw: We don’t need your truck image. You simply keep ignoring the point that all lifestyles prior to late sapiens were based mainly on survival...I gave you was: the hunter with a brand new spear is still a hunter.

I was only showing you complex use uses lots more brain than simpler use, a truism you constantly ignore.


dhw: Even with your own theory, why would your all-knowing, always-in-control God give us excess cells which turn out to be redundant? […]

DAVID: […] essential for what? We use our brain to live as best we can. We see the flow of hominin/homo lifestyle go from very simple to highly complex with each step of enlargement….

dhw: No we don’t. You’ve just said yourself that “the initial lifestyle requirements for early sapiens hardly differed from erectus”, and although undoubtedly the step from tree-dwelling to land-dwelling would have been a major development, the hunter with spear would have had the same lifestyle as the hunter without spear. I note your refusal to answer my question above.

The advantage of the extra cells I presented above, to allow the greatest degree of complexity to cover all new current needs as efficiently as possible.


DAVID…and we find a very high degree of complexity in our brain that has no resemblance to other primates. (Note bold above) Five tiers of frontal lobe neurons, probably evolved from hominin to now with a last very giant sapiens step.

dhw: Why do you keep repeating what we already know? The matter in dispute is how this very high degree evolved. You insist that your God kept operating on all the hominins and homos, enlarging their brains in anticipation of future needs, and in our case giving us excess cells we wouldn’t need in the future!

Because it is a matter of interpretation of what our brain contains: the special cortical organization of five neuron tiers is only ours and came by a recombination of an available extra number of neurons, by God's design.


dhw: […] apart from repeating your own preconceptions, you still haven’t given me one logical reason for rejecting this proposal.

DAVID: My rejection is based on your humanized view of what God might do. While you are theorizing you can make God into anything you wish. You never bring up my view of God.

dhw: I shan’t repeat the rest of the discussion, in which for the umpteenth time I summarized your own humanized view of God, whom you can “make into anything you wish”. It is covered again under “theodicy”, and it does not provide one single logical reason for rejecting my theory concerning the expansion and complexification of the brain!

I reject your interpretation primarily as an attempt to avoid God, but I show you a logical interpretation as to how the excess cells are used to create our very special brain. We do not know when this special arrangement of five tiers of neurons happened, but based on the evidence of how sapiens easily developed brain use and lifestyle, starting with language 70,000 years ago our brain is obviously very different I would then guess even from Neanderthal's bigger one. It is not size. It is complexity that makes the difference. Adler's point fits.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Tuesday, April 20, 2021, 11:54 (1311 days ago) @ David Turell

DAVID: The reason the brain complexifies is that it has extra neuron networks to work with....

dhw: Still totally ignoring the “response” evidence of how the brain works! The reason the brain complexifies, as we know from modern science, is that it has to adjust itself in order to meet new requirements.

DAVID: Not ignoring, but different interpretation: the extra cells allow a greater degree of complexity by having more neurons to work with from the start.

You are stating the blindly obvious, and ignoring the point that the only brain we know operates by RESPONDING to new requirements. It does not change in anticipation of new requirements, which is the reason you give for brain expansion.

DAVID: […] This is why I raised the point that the initial lifestyle requirements for early sapiens hardly differed from erectus.

dhw: […] . You simply keep ignoring the point that all lifestyles prior to late sapiens were based mainly on survival...The simple example I gave you was: the hunter with a brand new spear is still a hunter.

DAVID: I was only showing you complex use uses lots more brain than simpler use, a truism you constantly ignore.

I responded to your point that early sapiens’ lifestyle hardly differed from erectus, which according to you means that the newly expanded brain contained excess cells that were only used later. I pointed out that according to my theory, the improvements that required additional cells (e.g. the design, making and use of the spear) would not have changed the lifestyle. The hunter with a spear is still a hunter.

dhw: Even with your own theory, why would your all-knowing, always-in-control God give us excess cells which turn out to be redundant? […]

Still no answer.

DAVID: The advantage of the extra cells I presented above, to allow the greatest degree of complexity to cover all new current needs as efficiently as possible.

You’ve got it! In ALL cases of expansion including our own, the extra (not excessive) cells covered the new need, and then all current needs, through complexification. Only when NEW needs arose which the existing quantity of cells could not cover through complexification did expansion (the addition of cells) take place. However, 250,000 years after the last (sapiens) expansion, the brain could not expand any further, and so the cells’ ability to complexify was enhanced.

DAVID ...and we find a very high degree of complexity in our brain that has no resemblance to other primates. […]

dhw: Why do you keep repeating what we already know? The matter in dispute is how this very high degree evolved. You insist that your God kept operating on all the hominins and homos, enlarging their brains in anticipation of future needs, and in our case giving us excess cells we wouldn’t need in the future!

DAVID: Because it is a matter of interpretation of what our brain contains: the special cortical organization of five neuron tiers is only ours and came by a recombination of an available extra number of neurons, by God's design.

There is no dispute over what our brain contains, and yes indeed, as I keep telling you, it is the enhanced ability to complexify (recombination of the neurons that had existed and been in use for 250,000 years) that enabled sapiens to meet all the new requirements. As regards “by God’s design”, my theory allows for him designing the autonomous mechanism of complexification (which you accept - unless you have now decided that all our thoughts are thought for us by your God) AND the mechanism for expansion (which for some unknown reason you do not accept).

dhw: […] apart from repeating your own preconceptions, you still haven’t given me one logical reason for rejecting this proposal.

DAVID: I reject your interpretation primarily as an attempt to avoid God...

As above, how can I be avoiding God when I accept the possibility of his designing the autonomous mechanism?

DAVID: … but I show you a logical interpretation as to how the excess cells are used to create our very special brain.

They are not excessive if they are used to create our special brain! But once again: in my theory they were used until our enhanced ability to complexify made them redundant. And you still haven’t told us why your God would give us a load of useless extra cells.

DAVID: We do not know when this special arrangement of five tiers of neurons happened, but based on the evidence of how sapiens easily developed brain use and lifestyle, starting with language 70,000 years ago our brain is obviously very different I would then guess even from Neanderthal's bigger one. It is not size. It is complexity that makes the difference. Adler's point fits.

No one is denying that our brain is “very different”, and it has taken you a long time to stop harping on about size and to accept the point that I have been making ever since this discussion began: sapiens, like every other homo before him, would have used all the cells of his expanded brain until 250,000 years ago, when the brain could expand no further, and so ENHANCED COMPLEXIFICATION TOOK OVER (and rendered previously essential cells redundant). You’ve got it at last: in our case it is not size but complexity that makes the difference.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Tuesday, April 20, 2021, 17:46 (1311 days ago) @ dhw

DAVID: Not ignoring, but different interpretation: the extra cells allow a greater degree of complexity by having more neurons to work with from the start.

dhw: You are stating the blindly obvious, and ignoring the point that the only brain we know operates by RESPONDING to new requirements. It does not change in anticipation of new requirements, which is the reason you give for brain expansion.

You are still ignoring the fact that sapiens arrived with 150 cc more volume than needed. Our brain now responds to new use because of fact the extra size/neurons permitted complexification to select from the excess.


DAVID: I was only showing you complex use uses lots more brain than simpler use, a truism you constantly ignore.

dhw: I responded to your point that early sapiens’ lifestyle hardly differed from erectus, which according to you means that the newly expanded brain contained excess cells that were only used later. I pointed out that according to my theory, the improvements that required additional cells (e.g. the design, making and use of the spear) would not have changed the lifestyle. The hunter with a spear is still a hunter.

And with little more brain usage. You support my point.


DAVID: The advantage of the extra cells I presented above, to allow the greatest degree of complexity to cover all new current needs as efficiently as possible.

dhw: You’ve got it! In ALL cases of expansion including our own, the extra (not excessive) cells covered the new need, and then all current needs, through complexification.

They were still in excess until shrinkage in recent times. Always an excess until discarded.


DAVID: Because it is a matter of interpretation of what our brain contains: the special cortical organization of five neuron tiers is only ours and came by a recombination of an available extra number of neurons, by God's design.

dhw: There is no dispute over what our brain contains, and yes indeed, as I keep telling you, it is the enhanced ability to complexify (recombination of the neurons that had existed and been in use for 250,000 years) that enabled sapiens to meet all the new requirements.

There is no evidence the excess cells were used for 250,000 years and then discarded. When not chosen for complexity they were dropped.


DAVID: We do not know when this special arrangement of five tiers of neurons happened, but based on the evidence of how sapiens easily developed brain use and lifestyle, starting with language 70,000 years ago our brain is obviously very different I would then guess even from Neanderthal's bigger one. It is not size. It is complexity that makes the difference. Adler's point fits.

dhw: No one is denying that our brain is “very different”, and it has taken you a long time to stop harping on about size and to accept the point that I have been making ever since this discussion began: sapiens, like every other homo before him, would have used all the cells of his expanded brain until 250,000 years ago, when the brain could expand no further, and so ENHANCED COMPLEXIFICATION TOOK OVER (and rendered previously essential cells redundant). You’ve got it at last: in our case it is not size but complexity that makes the difference.

Large areas of the brain were not used 315,000 years ago. The official theory is when language appeared it required the recruitment of several brain areas to develop and tie to each other in stronger networking fashion. Same with all other developments. We had a brain wanting for developments, no matter how hard you obfuscate with verbiage about total brain use 315,000 years ago. At least I use current theory

Evolution: more genomic evidence of pre-planning Part One

by dhw, Wednesday, April 21, 2021, 13:25 (1310 days ago) @ David Turell

DAVID: […] the extra cells allow a greater degree of complexity by having more neurons to work with from the start.

dhw: You are stating the blindly obvious, and ignoring the point that the only brain we know operates by RESPONDING to new requirements. It does not change in anticipation of new requirements, which is the reason you give for brain expansion.

DAVID: You are still ignoring the fact that sapiens arrived with 150 cc more volume than needed. Our brain now responds to new use because of fact the extra size/neurons permitted complexification to select from the excess.

I keep disputing what you keep insisting is fact. Yet again: my proposal is that the extra 150 cc WAS needed to implement a new requirement, and it continued to be used until 250,000 years later, when more new requirements would have required further expansion, but instead complexification was enhanced, and THEN the previously essential 150cc became redundant . I keep answering your objections, and you keep ignoring my own: WE KNOW THAT THE MODERN BRAIN CHANGES IN RESPONSE TO NEW REQUIREMENTS, NOT IN ANTICIPATION OF THEM. WHY WOULD IT HAVE BEEN DIFFERENT IN THE PAST?

dhw: I responded to your point that early sapiens’ lifestyle hardly differed from erectus, which according to you means that the newly expanded brain contained excess cells that were only used later. I pointed out that according to my theory, the improvements that required additional cells (e.g. the design, making and use of the spear) would not have changed the lifestyle. The hunter with a spear is still a hunter.

DAVID: And with little more brain usage. You support my point.

You keep missing my point: the spear did not change the lifestyle, but it required the extra cells. The same process would have continued right through to H. sapiens: expansion to meet new requirements; final expansion 315,000 years ago. But next time expansion would have been required, complexification took over, and made some previously essential cells redundant.

DAVID: The advantage of the extra cells I presented above, to allow the greatest degree of complexity to cover all new current needs as efficiently as possible.

dhw: You’ve got it! In ALL cases of expansion including our own, the extra (not excessive) cells covered the new need, and then all current needs, through complexification.

DAVID: There is no evidence the excess cells were used for 250,000 years and then discarded. When not chosen for complexity they were dropped.

There is no evidence that your God kept popping in to operate on the brains of sleeping hominins and homos in order to prepare their brains for some future requirements! What do you mean by they were not “chosen” for complexity? Since the only chooser you believe in is your God, are you saying that your God deliberately gave early sapiens 150 cc unnecessary cells, and 250,000 years later decided he didn’t need them for complexification? Why do you find your God’s little blunder more convincing than the proposal that enhanced complexification made previously needed cells redundant?

DAVID: The official theory is when language appeared it required the recruitment of several brain areas to develop and tie to each other in stronger networking fashion.

Precisely. The brain areas were already there, and there is no reason whatsoever to believe that they were not being used. Do you really think our ancestors never communicated? But the new requirement (a more complex form of language) required new networks (connections plus a degree of restructuring), i.e. complexification.

DAVID: Same with all other developments. We had a brain wanting for developments, no matter how hard you obfuscate with verbiage about total brain use 315,000 years ago. At least I use current theory.

What do you mean by “wanting for developments”? All brains would have complexified until the capacity for complexification was exhausted, and then new cells were needed. But in sapiens' case, new cells would have been impractical (possibly because they would have caused anatomical problems) and so the capacity for complexification was enhanced. How does this contradict current theory? And why do you persist in ignoring current knowledge, that the brain RESPONDS to requirements and does not rearrange itself in anticipation of future needs?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Wednesday, April 21, 2021, 18:35 (1310 days ago) @ dhw

DAVID: You are still ignoring the fact that sapiens arrived with 150 cc more volume than needed. Our brain now responds to new use because of fact the extra size/neurons permitted complexification to select from the excess.

I keep disputing what you keep insisting is fact. Yet again: my proposal is that the extra 150 cc WAS needed to implement a new requirement, and it continued to be used until 250,000 years later, when more new requirements would have required further expansion, but instead complexification was enhanced, and THEN the previously essential 150cc became redundant . I keep answering your objections, and you keep ignoring my own: WE KNOW THAT THE MODERN BRAIN CHANGES IN RESPONSE TO NEW REQUIREMENTS, NOT IN ANTICIPATION OF THEM. WHY WOULD IT HAVE BEEN DIFFERENT IN THE PAST?

Excess is excess no matter how you contort it. You are proposing a light use of all neurons in the brain when enlargement occurs, and with heavy use later 150 cc of them disappears. Strange, so heavy use makes some neurons unnecessary? Heavy use in our current brain grows volumes of new axon connections, which tells us any heavy use simply enlarges axon networks. We know our early brain was lightly used, but had great potential for complex use. As for the past I assume, as you do, the process was the same: enlargement in anticipation of future use with some excess neurons discarded as complexification occurred to fit the new uses. And of course with God as the designer.

dhw: There is no evidence that your God kept popping in to operate on the brains of sleeping hominins and homos in order to prepare their brains for some future requirements! What do you mean by they were not “chosen” for complexity? Since the only chooser you believe in is your God, are you saying that your God deliberately gave early sapiens 150 cc unnecessary cells, and 250,000 years later decided he didn’t need them for complexification? Why do you find your God’s little blunder more convincing than the proposal that enhanced complexification made previously needed cells redundant?

Blunder? Denigrating God as usual. The extra cells allow for precise tailoring in complexification, since we have free will and can choose our own uses of the brain without God's guidance. Free will is an important part of the equation you don't consider.


DAVID: The official theory is when language appeared it required the recruitment of several brain areas to develop and tie to each other in stronger networking fashion.

dhw: Precisely. The brain areas were already there, and there is no reason whatsoever to believe that they were not being used. Do you really think our ancestors never communicated? But the new requirement (a more complex form of language) required new networks (connections plus a degree of restructuring), i.e. complexification.

There are thousands of languages. The excess cells allowed for precise networking to fit each language. Makes my point.


DAVID: Same with all other developments. We had a brain wanting for developments, no matter how hard you obfuscate with verbiage about total brain use 315,000 years ago. At least I use current theory.

dhw: What do you mean by “wanting for developments”? All brains would have complexified until the capacity for complexification was exhausted, and then new cells were needed. But in sapiens' case, new cells would have been impractical (possibly because they would have caused anatomical problems) and so the capacity for complexification was enhanced. How does this contradict current theory? And why do you persist in ignoring current knowledge, that the brain RESPONDS to requirements and does not rearrange itself in anticipation of future needs?

We still totally disagree in interpretation. God designs the larger brain for future use by free-will hominins/homos in all stages.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Thursday, April 22, 2021, 08:44 (1310 days ago) @ David Turell

dhw:[...] I keep answering your objections, and you keep ignoring my own: WE KNOW THAT THE MODERN BRAIN CHANGES IN RESPONSE TO NEW REQUIREMENTS, NOT IN ANTICIPATION OF THEM. WHY WOULD IT HAVE BEEN DIFFERENT IN THE PAST?

DAVID: Excess is excess no matter how you contort it. You are proposing a light use of all neurons in the brain when enlargement occurs, and with heavy use later 150 cc of them disappears. Strange, so heavy use makes some neurons unnecessary? Heavy use in our current brain grows volumes of new axon connections, which tells us any heavy use simply enlarges axon networks.

And STILL you go on ignoring the question written in block capitals. You are now repeating my own theory in different terms, as if somehow that invalidated it! Yes, once the brain had expanded to 1350 cc, all cells would have been used. We don’t need your new category of light and heavy use, which glosses over the central issue of requirements. 250,000 years after this final expansion, new requirements would have been met by further expansion, but as presumably the brain could not expand any further, the new requirements resulted in new connections and enlarged networks, which we have previously called “complexification”. And because the new connections and enlarged networks (complexification) worked so efficiently, the previously essential cells were no longer necessary. Now please answer the question I have written in block capitals.

DAVID: We know our early brain was lightly used, but had great potential for complex use. As for the past I assume, as you do, the process was the same: enlargement in anticipation of future use with some excess neurons discarded as complexification occurred to fit the new uses. And of course with God as the designer.

Of course it had potential. That does not mean your God stuck in an extra 150cc which were not needed at the time. And as for the past, no, I do not believe that the process was in anticipation of future use or that excess neurons were discarded! Why are you shoving your theory onto me? I am proposing that there were never any excess neurons until sapiens' enhanced complexification came into force. In the past, when complexification could no longer cope, I propose that there was enlargement to meet new requirements, not to anticipate future use. But it is possible that your God was the designer of the autonomous mechanism which you agree runs complexification, but which you refuse to even consider as the source of expansion.

dhw: There is no evidence that your God kept popping in to operate on the brains of sleeping hominins and homos in order to prepare their brains for some future requirements! What do you mean by they were not “chosen” for complexity? Since the only chooser you believe in is your God, are you saying that your God deliberately gave early sapiens 150 cc unnecessary cells, and 250,000 years later decided he didn’t need them for complexification? Why do you find your God’s little blunder more convincing than the proposal that enhanced complexification made previously needed cells redundant?

DAVID: Blunder? Denigrating God as usual. The extra cells allow for precise tailoring in complexification, since we have free will and can choose our own uses of the brain without God's guidance. Free will is an important part of the equation you don't consider.

It is you who denigrate your God by claiming that he gave us excessive neurons which proved unnecessary. Now suddenly you change your tune: the 150 cc were not excessive – now you think they were essential for the way complexification worked, and they even gave us our free will (which denotes the autonomy of complexification). So why were they made redundant?

DAVID: The official theory is when language appeared it required the recruitment of several brain areas to develop and tie to each other in stronger networking fashion.

dhw: Precisely. The brain areas were already there, and there is no reason whatsoever to believe that they were not being used. Do you really think our ancestors never communicated? But the new requirement (a more complex form of language) required new networks (connections plus a degree of restructuring), i.e. complexification.

DAVID: There are thousands of languages. The excess cells allowed for precise networking to fit each language. Makes my point.

Then why do you call them excess if we couldn’t have managed to speak our languages without them?

dhw: …why do you persist in ignoring current knowledge, that the brain RESPONDS to requirements and does not rearrange itself in anticipation of future needs?

DAVID: We still totally disagree in interpretation. God designs the larger brain for future use by free-will hominins/homos in all stages.

Repeating your fixed belief is not an answer to my question.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Thursday, April 22, 2021, 20:10 (1309 days ago) @ dhw

dhw:[...] I keep answering your objections, and you keep ignoring my own: WE KNOW THAT THE MODERN BRAIN CHANGES IN RESPONSE TO NEW REQUIREMENTS, NOT IN ANTICIPATION OF THEM. WHY WOULD IT HAVE BEEN DIFFERENT IN THE PAST?

DAVID: Excess is excess no matter how you contort it. You are proposing a light use of all neurons in the brain when enlargement occurs, and with heavy use later 150 cc of them disappears. Strange, so heavy use makes some neurons unnecessary? Heavy use in our current brain grows volumes of new axon connections, which tells us any heavy use simply enlarges axon networks.

dhw: And STILL you go on ignoring the question written in block capitals. You are now repeating my own theory in different terms, as if somehow that invalidated it! Yes, once the brain had expanded to 1350 cc, all cells would have been used. We don’t need your new category of light and heavy use, which glosses over the central issue of requirements.

I'm only ignoring your twisted interpretation. I'll accept your all-over usage, but it must be light use compared to how our brain is utilized today. Look at all the things our brain does now compared to then.


DAVID: We know our early brain was lightly used, but had great potential for complex use. As for the past I assume, as you do, the process was the same: enlargement in anticipation of future use with some excess neurons discarded as complexification occurred to fit the new uses. And of course with God as the designer.

dhw: Of course it had potential. That does not mean your God stuck in an extra 150cc which were not needed at the time. And as for the past, no, I do not believe that the process was in anticipation of future use or that excess neurons were discarded! Why are you shoving your theory onto me? I am proposing that there were never any excess neurons until sapiens' enhanced complexification came into force. In the past, when complexification could no longer cope, I propose that there was enlargement to meet new requirements, not to anticipate future use. But it is possible that your God was the designer of the autonomous mechanism which you agree runs complexification, but which you refuse to even consider as the source of expansion.

Look, my position is unchanged. God expanded all hominin/homo brains. The overexpansion does not fit your goal of a naturally caused expansion, un less the idea of light over-all use is accepted, which means still over expanded. .


dhw: It is you who denigrate your God by claiming that he gave us excessive neurons which proved unnecessary. Now suddenly you change your tune: the 150 cc were not excessive – now you think they were essential for the way complexification worked, and they even gave us our free will (which denotes the autonomy of complexification). So why were they made redundant?

A clever design by God which prepares for whatever uses we free-will humans invent is not any form of denigration except in your twisted view.
ired new networks (connections plus a degree of restructuring), i.e. complexification.[/i]


DAVID: There are thousands of languages. The excess cells allowed for precise networking to fit each language. Makes my point.

dhw: Then why do you call them excess if we couldn’t have managed to speak our languages without them?

The excess cells allowed a special complexification of the brain for all the different types of networks needed for different languages.


dhw: …why do you persist in ignoring current knowledge, that the brain RESPONDS to requirements and does not rearrange itself in anticipation of future needs?

DAVID: We still totally disagree in interpretation. God designs the larger brain for future use by free-will hominins/homos in all stages.

dhw: Repeating your fixed belief is not an answer to my question.

Our brain responds with complexification, a mechanism planned, designed and given by God. Therefore it can rearrange itself whenever necessary. You have my response.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Friday, April 23, 2021, 13:24 (1308 days ago) @ David Turell

DAVID: Excess is excess no matter how you contort it. You are proposing a light use of all neurons in the brain when enlargement occurs, and with heavy use later 150 cc of them disappears. Strange, so heavy use makes some neurons unnecessary? Heavy use in our current brain grows volumes of new axon connections, which tells us any heavy use simply enlarges axon networks.

dhw: You are now repeating my own theory in different terms, as if somehow that invalidated it! Yes, once the brain had expanded to 1350 cc, all cells would have been used. We don’t need your new category of light and heavy use, which glosses over the central issue of requirements.

DAVID: I'm only ignoring your twisted interpretation. I'll accept your all-over usage, but it must be light use compared to how our brain is utilized today. Look at all the things our brain does now compared to then.

Of course it’s light use by comparison. The “heavy” use would have been the new requirement that necessitated additional cells in the first place. This new requirement then became part of ordinary life, and the new cells would have continued to perform their new function, joining in the process of complexification to cover all needs, until the next “heavy” requirement – in our case, 2500 years later. I have no objection if you want to call that intermediate use “light”. The point is that the new cells were NOT excess: they met and continued to meet the requirements that first made them necessary until enhanced complexification made them redundant (= shrinkage).

dhw: […][…] it is possible that your God was the designer of the autonomous mechanism which you agree runs complexification, but which you refuse to even consider as the source of expansion.

DAVID: Look, my position is unchanged. God expanded all hominin/homo brains. The overexpansion does not fit your goal of a naturally caused expansion, unless the idea of light over-all use is accepted, which means still over expanded.

The expansion was NOT overexpansion. You have just agreed that the additional cells were used “lightly”, but you ignore my proposal that these additional cells came into being because they were necessary – as with all older brains – to meet what at the time would have been a major new requirement. I needn’t repeat the list of possible candidates for this major new requirement, but to stick to our simple example: new idea – make spear. Additional cells required for design, manufacture and use of spear. These new cells required from then on to continue making and using spears and for what you now call light overall use, which I’m happy to accept. (Period of stasis = no major new requirements.) But I absolutely do not accept that light overall use of new cells means that they were excessive, i.e. not needed. They came into being BECAUSE of the need for a new "heavy" use. And to forestall what I anticipate would be your next question, I have explained shrinkage above.

dhw: It is you who denigrate your God by claiming that he gave us excessive neurons which proved unnecessary. Now suddenly you change your tune: the 150 cc were not excessive – now you think they were essential for the way complexification worked, and they even gave us our free will (which denotes the autonomy of complexification). So why were they made redundant?

DAVID: A clever design by God which prepares for whatever uses we free-will humans invent is not any form of denigration except in your twisted view.
ired new networks (connections plus a degree of restructuring), i.e. complexification.

Something has got lost here, but I have never excluded the possibility that the whole system was God’s clever design. The denigration was yours, in proposing that your God gave us 150cc of “excess” (i.e. unnecessary) cells. I keep saying that they were not unnecessary, and now you tell us that they were necessary for complexification. Please make up your mind.

DAVID: There are thousands of languages. The excess cells allowed for precise networking to fit each language. Makes my point.

dhw: Then why do you call them excess if we couldn’t have managed to speak our languages without them?

DAVID: The excess cells allowed a special complexification of the brain for all the different types of networks needed for different languages.

“Excess” means additional and unnecessary. How can they have been unnecessary if they enabled the brain to complexify in the manner required for our languages?

dhw: …why do you persist in ignoring current knowledge, that the brain RESPONDS to requirements and does not rearrange itself in anticipation of future needs?

DAVID: Our brain responds with complexification, a mechanism planned, designed and given by God. Therefore it can rearrange itself whenever necessary. You have my response.

Thank you for at last answering the question. We have now established once and for all that the brain complexifies autonomously in RESPONSE to new requirements (using a mechanism you believe was designed by your God). Bearing in mind that the modern hippocampus actually expands, why then do you assume that in the past, brains were unable to expand autonomously, and did NOT expand in response to new requirements but had to be operated on so your God could give them additional cells in anticipation of unknown future requirements?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Friday, April 23, 2021, 19:27 (1308 days ago) @ dhw

dhw: Of course it’s light use by comparison. The “heavy” use would have been the new requirement that necessitated additional cells in the first place. This new requirement then became part of ordinary life, and the new cells would have continued to perform their new function, joining in the process of complexification to cover all needs, until the next “heavy” requirement – in our case, 2500 years later.

All we have decided is God provided excess cells at the original enlargement of the sapiens brain, and with full use of the brain the excess was discarded by complexification. Light use of all neurons at first is certainly reasonable, allowing for free-will humans to use their new brain any way they wished.


dhw:The expansion was NOT overexpansion. You have just agreed that the additional cells were used “lightly”, but you ignore my proposal that these additional cells came into being because they were necessary

Necessary for only very light use, and available for heavy use later on. You can't get rid of an obvious excess that was provided initially by God to allow all sorts of future uses invented by humans..

dhw: It is you who denigrate your God by claiming that he gave us excessive neurons which proved unnecessary. Now suddenly you change your tune: the 150 cc were not excessive – now you think they were essential for the way complexification worked, and they even gave us our free will (which denotes the autonomy of complexification). So why were they made redundant?

DAVID: A clever design by God which prepares for whatever uses we free-will humans invent is not any form of denigration except in your twisted view.

dhw: Something has got lost here, but I have never excluded the possibility that the whole system was God’s clever design. The denigration was yours, in proposing that your God gave us 150cc of “excess” (i.e. unnecessary) cells. I keep saying that they were not unnecessary, and now you tell us that they were necessary for complexification. Please make up your mind.

My mind is solid. The excess neurons let us free-willed folks to use our brains we wished. God accepted us as He wished to create us.


DAVID: There are thousands of languages. The excess cells allowed for precise networking to fit each language. Makes my point.

dhw: Then why do you call them excess if we couldn’t have managed to speak our languages without them?

DAVID: The excess cells allowed a special complexification of the brain for all the different types of networks needed for different languages.

dhw: “Excess” means additional and unnecessary. How can they have been unnecessary if they enabled the brain to complexify in the manner required for our languages?

If they weren't needed and disappeared as we discovered different functions for the new- sized brain they were excessive to allow for proper tailoring and were purposely made available by God to allow us the privilege of our own evolution of our brain.


dhw: …why do you persist in ignoring current knowledge, that the brain RESPONDS to requirements and does not rearrange itself in anticipation of future needs?

DAVID: Our brain responds with complexification, a mechanism planned, designed and given by God. Therefore it can rearrange itself whenever necessary. You have my response.

dhw: Thank you for at last answering the question. We have now established once and for all that the brain complexifies autonomously in RESPONSE to new requirements (using a mechanism you believe was designed by your God). Bearing in mind that the modern hippocampus actually expands, why then do you assume that in the past, brains were unable to expand autonomously, and did NOT expand in response to new requirements but had to be operated on so your God could give them additional cells in anticipation of unknown future requirements?

God speciates. Only the hippocampus must expand as we learn to do new tricks/procedures with our brain and must add memory. Older brains were most likely the same with new organisms building upon what was done in the past. Why do you day dream possibilities not based on what we know about brains from today's brain? In my view today's brain's mechanisms mimic what happened in past brains.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Saturday, April 24, 2021, 11:12 (1307 days ago) @ David Turell

DAVID: All we have decided is God provided excess cells at the original enlargement of the sapiens brain, and with full use of the brain the excess was discarded by complexification.

We have not decided any such thing. You simply continue to ignore all my arguments! If God exists, firstly I challenge your theory that he performed operations on all the hominins and homos to pop a few extra cells into their brains in anticipation of future requirements. (See below for more details.) Secondly, I challenge your theory that the original enlargement of the sapiens brain provided “excess” cells. My proposal is that they were NEEDED to fulfil a new requirement. Once this was fulfilled, the cells continued to perform the functions that first made them necessary, and they and all the other cells would have continued to complexify until the next major requirement (you reckon it was 250,000 years later) necessitated a substantial change. In the past, that would have been the addition of new cells, but as the brain could not expand any more, enhanced complexification took over. This proved so efficient that certain cells were no longer necessary (= shrinkage).

DAVID: Light use of all neurons at first is certainly reasonable, allowing for free-will humans to use their new brain any way they wished.

What you call light use would have occurred during the period of stasis when there were no major new requirements. I don’t know why you are now harping on free will, as this in itself is a controversial subject. But even if we assume that we have it, our ancestors would also have had it, unless you think that your God had not yet given them the autonomous ability to invent new tools and weapons, adopt new ways of coping with their environment, establishing social practices, making clothes, using fire etc. This is the point I was making above: I do not accept the idea that your God performed operations on them to give them more cells in anticipation of these advances. If we have free will to invent, then so did they.

DAVID: You can't get rid of an obvious excess that was provided initially by God to allow all sorts of future uses invented by humans.

I have got rid of it over and over again, but you refuse to even consider what I write, and you refuse to provide a logical reason for rejecting it. I’ll skip most of the remaining post, which merely repeats vague statements about free will and excessive cells which allow “proper tailoring”, and move to the last exchange:

dhw:. We have now established once and for all that the brain complexifies autonomously in RESPONSE to new requirements (using a mechanism you believe was designed by your God). Bearing in mind that the modern hippocampus actually expands, why then do you assume that in the past, brains were unable to expand autonomously, and did NOT expand in response to new requirements but had to be operated on so your God could give them additional cells in anticipation of unknown future requirements?

DAVID: […] Only the hippocampus must expand as we learn to do new tricks/procedures with our brain and must add memory.

So we know that part of the modern brain can expand autonomously.

DAVID: Older brains were most likely the same with new organisms building upon what was done in the past. Why do you day dream possibilities not based on what we know about brains from today's brain? In my view today's brain's mechanisms mimic what happened in past brains.

Precisely. They would have complexified autonomously, as do our modern brains, and they would have expanded autonomously, as does our modern hippocampus – both processes in RESPONSE to requirements and not in anticipation of them. You’ve finally got the message, though I have no idea why you call it “daydreaming”

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Saturday, April 24, 2021, 16:09 (1307 days ago) @ dhw

DAVID: All we have decided is God provided excess cells at the original enlargement of the sapiens brain, and with full use of the brain the excess was discarded by complexification.

dhw: We have not decided any such thing. You simply continue to ignore all my arguments!

I don't ignore your arguments, I reject them. You cannot wish away the fact that we had more cells when our brain appeared than we have now under much heavier use than was present then.

dhw: My proposal is that they were NEEDED to fulfil a new requirement.

And I've agreed it is possible/reasonable light use of all the initial bigger brain happened.

dhw: but as the brain could not expand any more,

How do you know that as fact? Neanderthals had bigger brain volume.


DAVID: Light use of all neurons at first is certainly reasonable, allowing for free-will humans to use their new brain any way they wished.

hw: What you call light use would have occurred during the period of stasis when there were no major new requirements. I don’t know why you are now harping on free will, as this in itself is a controversial subject. But even if we assume that we have it, our ancestors would also have had it, unless you think that your God had not yet given them the autonomous ability to invent new tools and weapons, adopt new ways of coping with their environment, establishing social practices, making clothes, using fire etc. This is the point I was making above: I do not accept the idea that your God performed operations on them to give them more cells in anticipation of these advances. If we have free will to invent, then so did they.

I'll stay with my personal theology. God speciates, and you reject it. No changes.


DAVID: You can't get rid of an obvious excess that was provided initially by God to allow all sorts of future uses invented by humans.

dhw: I have got rid of it over and over again, but you refuse to even consider what I write, and you refuse to provide a logical reason for rejecting it. I’ll skip most of the remaining post, which merely repeats vague statements about free will and excessive cells which allow “proper tailoring”, and move to the last exchange:

dhw:. We have now established once and for all that the brain complexifies autonomously in RESPONSE to new requirements (using a mechanism you believe was designed by your God). Bearing in mind that the modern hippocampus actually expands, why then do you assume that in the past, brains were unable to expand autonomously, and did NOT expand in response to new requirements but had to be operated on so your God could give them additional cells in anticipation of unknown future requirements?

DAVID: […] Only the hippocampus must expand as we learn to do new tricks/procedures with our brain and must add memory.

dhw: So we know that part of the modern brain can expand autonomously.

For the obvious reasons I've presented.


DAVID: Older brains were most likely the same with new organisms building upon what was done in the past. Why do you day dream possibilities not based on what we know about brains from today's brain? In my view today's brain's mechanisms mimic what happened in past brains.

dhw: Precisely. They would have complexified autonomously, as do our modern brains, and they would have expanded autonomously, as does our modern hippocampus – both processes in RESPONSE to requirements and not in anticipation of them. You’ve finally got the message, though I have no idea why you call it “daydreaming”

I understand your position and have granted the possibility of light use all over the first enlarged brain with cells to be shucked later, as free-willed humans learned to use their new big brain, supplied by God's speciation.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Sunday, April 25, 2021, 09:14 (1307 days ago) @ David Turell

DAVID: All we have decided is God provided excess cells at the original enlargement of the sapiens brain, and with full use of the brain the excess was discarded by complexification.

dhw: We have not decided any such thing. You simply continue to ignore all my arguments!

DAVID: I don't ignore your arguments, I reject them. You cannot wish away the fact that we had more cells when our brain appeared than we have now under much heavier use than was present then.

I have not wished it away. That is what we call shrinkage, and I have explained it over and over again: when enhanced complexification took over from expansion, it proved so efficient that certain previously essential cells became redundant. Please stop ignoring my arguments.

dhw: My proposal is that they [the new cells] were NEEDED to fulfil a new requirement.

DAVID: And I've agreed it is possible/reasonable light use of all the initial bigger brain happened.

A crucial breakthrough. Your recently coined term “light use” is simply another way of describing stasis, when there are no new requirements and so the new cells perform the function that brought them into existence, and all the cells cope with current requirements through complexification until a major new requirement leads to further expansion. But this didn’t or couldn’t happen 2500 years after the last expansion, and enhanced complexification took over (resulting as above in shrinkage). What do you disagree with?

dhw: …but as the brain could not expand any more

DAVID: How do you know that as fact? Neanderthals had bigger brain volume.

I don’t know it as fact, any more than you know it as fact that your God popped in and performed a brain operation on all the sleeping hominins and homos to give them cells they didn’t need at the time. All we know is that the brain (apart from the hippocampus) stopped expanding. I have suggested a logical reason. Neanderthal’s anatomy was different from ours, and maybe ours has advantages over theirs.

DAVID: Light use of all neurons at first is certainly reasonable, allowing for free-will humans to use their new brain any way they wished.

dhw: […] I don’t know why you are now harping on free will, as this in itself is a controversial subject. But even if we assume that we have it, our ancestors would also have had it, unless you think that your God had not yet given them the autonomous ability to invent new tools and weapons, adopt new ways of coping with their environment, establishing social practices, making clothes, using fire etc. […] I do not accept the idea that your God performed operations on them to give them more cells in anticipation of these advances. If we have free will to invent, then so did they.

DAVID: I'll stay with my personal theology. God speciates, and you reject it. No changes.

We are talking about our ancestors. Do you believe your God gave them the autonomous ability to invent new tools etc., as above, or do you think he programmed or taught them how to do it and only stopped programming or teaching when he designed sapiens? If they had the same autonomous power, then they already had the same mechanisms as ours, and we neither complexify nor expand IN ANTICIPATION of new requirements. Both processes come into operation IN RESPONSE to new requirements.

DAVID: […] Only the hippocampus must expand as we learn to do new tricks/procedures with our brain and must add memory.

dhw: So we know that part of the modern brain can expand autonomously.

DAVID: For the obvious reasons I've presented.

Agreed. All expansions and complexifications must have reasons, as we know from the modern brain. So why would earlier brains NOT have complexified AND expanded in response to new requirements, as the modern brain does?

DAVID: Older brains were most likely the same with new organisms building upon what was done in the past. Why do you day dream possibilities not based on what we know about brains from today's brain? In my view today's brain's mechanisms mimic what happened in past brains.

dhw: Precisely. They would have complexified autonomously, as do our modern brains, and they would have expanded autonomously, as does our modern hippocampus – both processes in RESPONSE to requirements and not in anticipation of them. You’ve finally got the message, though I have no idea why you call it “daydreaming”

DAVID: I understand your position and have granted the possibility of light use all over the first enlarged brain with cells to be shucked later, as free-willed humans learned to use their new big brain, supplied by God's speciation.

In brief, you cannot find a single flaw in my proposal, but instead of explicitly accepting that God could have supplied the mechanism which gave the brains of our ancestors as well as ourselves the autonomous ability to complexify AND expand, you hide behind a massive generalization about species.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Sunday, April 25, 2021, 17:44 (1306 days ago) @ dhw

DAVID: I don't ignore your arguments, I reject them. You cannot wish away the fact that we had more cells when our brain appeared than we have now under much heavier use than was present then.

dhw: I have not wished it away. That is what we call shrinkage, and I have explained it over and over again: when enhanced complexification took over from expansion, it proved so efficient that certain previously essential cells became redundant. Please stop ignoring my arguments.

I don't accept your arguments. The excess cells were lightly used and once complexification organized very complex networks which handled heavy use, they were unnecessary and discarded.

dhw: My proposal is that they [the new cells] were NEEDED to fulfil a new requirement.

DAVID: And I've agreed it is possible/reasonable light use of all the initial bigger brain happened.

dhw: A crucial breakthrough. Your recently coined term “light use” is simply another way of describing stasis, when there are no new requirements and so the new cells perform the function that brought them into existence,... What do you disagree with?

Your whole concept. We had to learn to use our oversized brain, by adding huge new functions such as usable language with speech, more exact stone tool manufacture, leaving caves for structures like tents, and softening hides for clothing and more recently arithmetic, and other immaterial concepts. with shrinkage of the excess. The excess allowed us to tailor our own new big brains.

DAVID: I'll stay with my personal theology. God speciates, and you reject it. No changes.

dhw: We are talking about our ancestors. Do you believe your God gave them the autonomous ability to invent new tools etc., as above, or do you think he programmed or taught them how to do it

Answered already. We learned to use our big brains ourselves over lots of time.


DAVID: […] Only the hippocampus must expand as we learn to do new tricks/procedures with our brain and must add memory.

dhw: So we know that part of the modern brain can expand autonomously.

DAVID: For the obvious reasons I've presented.

dhw: Agreed. All expansions and complexifications must have reasons, as we know from the modern brain. So why would earlier brains NOT have complexified AND expanded in response to new requirements, as the modern brain does?

I think all past brains responded exactly as ours. God-given oversized at each stage and complexified a bit. Our brain built on the past shows what happened in the past. That limits our theories to the facts we have.


DAVID: I understand your position and have granted the possibility of light use all over the first enlarged brain with cells to be shucked later, as free-willed humans learned to use their new big brain, supplied by God's speciation.

dhw: In brief, you cannot find a single flaw in my proposal, but instead of explicitly accepting that God could have supplied the mechanism which gave the brains of our ancestors as well as ourselves the autonomous ability to complexify AND expand, you hide behind a massive generalization about species.

Yes, I agree likely older brains were oversized and complexified slightly with new use. God speciating is not a massive subterfuge, it is my belief God evolved us. What we know ab out our brain must be used in considering how the past brains worked. Some excess at each stage, to allow complexification tailoring for existing usages.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Monday, April 26, 2021, 08:31 (1306 days ago) @ David Turell

DAVID: I don't ignore your arguments, I reject them. You cannot wish away the fact that we had more cells when our brain appeared than we have now under much heavier use than was present then.

dhw: I have not wished it away. That is what we call shrinkage, and I have explained it over and over again: when enhanced complexification took over from expansion, it proved so efficient that certain previously essential cells became redundant. Please stop ignoring my arguments.

DAVID: I don't accept your arguments. The excess cells were lightly used and once complexification organized very complex networks which handled heavy use, they were unnecessary and discarded.

You say you don’t accept my arguments, but then you proceed to repeat them almost word for word, except for calling the new cells “excess”! I suppose I’d better repeat that in my theory, the EXTRA (not “excess”) cells were added in response to new requirements. During the period of stasis there were no major (your "heavy") new requirements, and so they would then have continued to be used (with "light" complexification) for that new purpose and any other minor requirements, until 250,000 years later. Then new requirements led not to expansion but to enhanced complexification, which made some cells unnecessary. What do you disagree with?

DAVID: Your whole concept. We had to learn to use our oversized brain, by adding huge new functions such as usable language with speech, more exact stone tool manufacture, leaving caves for structures like tents, and softening hides for clothing and more recently arithmetic, and other immaterial concepts. with shrinkage of the excess. The excess allowed us to tailor our own new big brains.

You are fixated on the idea that our brains were oversized, and all new cells were excessive. The picture you draw is absurd in the light of modern research, which shows that our brains complexify (and the hippocampus expands) IN RESPONSE to new demands. I don’t believe we said to ourselves: “Oh, God gave me a lot of new cells that aren’t doing anything, so I’d better invent language etc.” I’ve explained why I think the new cells were added initially (new requirements), and why they were “lightly used” during stasis (no major new requirements), and then all the new ideas etc. that you have listed required enhanced complexification of the existing cells (including the original extra ones) – and, for the umpteenth time, this proved so efficient that certain cells became unnecessary. Once more, what logical flaw can you find in this theory?

DAVID: I'll stay with my personal theology. God speciates, and you reject it. No changes.

dhw: We are talking about our ancestors. Do you believe your God gave them the autonomous ability to invent new tools etc., as above, or do you think he programmed or taught them how to do it?

DAVID: Answered already. We learned to use our big brains ourselves over lots of time.

I’ll take that as meaning that our ancestors did indeed have the autonomous ability to invent new tools.

DAVID: […] Only the hippocampus must expand as we learn to do new tricks/procedures with our brain and must add memory.

dhw: So we know that part of the modern brain can expand autonomously.

DAVID: For the obvious reasons I've presented.

dhw: Agreed. All expansions and complexifications must have reasons, as we know from the modern brain. So why would earlier brains NOT have complexified AND expanded in response to new requirements, as the modern brain does?

DAVID: I think all past brains responded exactly as ours. God-given oversized at each stage and complexified a bit. Our brain built on the past shows what happened in the past. That limits our theories to the facts we have.

Again, I have no idea why you keep saying our brain was oversized, except that you are desperate to hold onto your idea that your God programmed or dabbled all changes IN ANTICIPATION of any requirements, whereas our brains show that the procedure is the opposite: our brains change IN RESPONSE to new requirements. Yes indeed, that limits our theories to the facts we have, despite your efforts to ignore those facts.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Monday, April 26, 2021, 16:17 (1305 days ago) @ dhw

DAVID: I don't accept your arguments. The excess cells were lightly used and once complexification organized very complex networks which handled heavy use, they were unnecessary and discarded.

dhw: You say you don’t accept my arguments, but then you proceed to repeat them almost word for word, except for calling the new cells “excess”! I suppose I’d better repeat that in my theory, the EXTRA (not “excess”) cells were added in response to new requirements. During the period of stasis there were no major (your "heavy") new requirements, and so they would then have continued to be used (with "light" complexification) for that new purpose and any other minor requirements, until 250,000 years later. Then new requirements led not to expansion but to enhanced complexification, which made some cells unnecessary. What do you disagree with?

How we view the extra cells. I'll agree they might have been useful in the beginning, and I've given you a good reason why they gave us the ability to tailor our later use of our brains, and ended up as excess and jettisoned.


DAVID: Your whole concept. We had to learn to use our oversized brain, by adding huge new functions such as usable language with speech, more exact stone tool manufacture, leaving caves for structures like tents, and softening hides for clothing and more recently arithmetic, and other immaterial concepts. with shrinkage of the excess. The excess allowed us to tailor our own new big brains.

dhw: You are fixated on the idea that our brains were oversized, and all new cells were excessive....Once more, what logical flaw can you find in this theory?

Your fixation is a total denial that extra cells removed means they were necessary. Irrational topsy-turvy reasoning. My version of your theory makes sense.


DAVID: Answered already. We learned to use our big brains ourselves over lots of time.

dhw: I’ll take that as meaning that our ancestors did indeed have the autonomous ability to invent new tools.

Of course they did. Habilis is named for his tools. Your point?

dhw: Agreed. All expansions and complexifications must have reasons, as we know from the modern brain. So why would earlier brains NOT have complexified AND expanded in response to new requirements, as the modern brain does?

DAVID: I think all past brains responded exactly as ours. God-given oversized at each stage and complexified a bit. Our brain built on the past shows what happened in the past. That limits our theories to the facts we have.

dhw: Again, I have no idea why you keep saying our brain was oversized, except that you are desperate to hold onto your idea that your God programmed or dabbled all changes IN ANTICIPATION of any requirements, whereas our brains show that the procedure is the opposite: our brains change IN RESPONSE to new requirements. Yes indeed, that limits our theories to the facts we have, despite your efforts to ignore those facts.

Same irrational "Alice in Wonderland" nonsensical thought that extra cells that are removed are therefore useful and not excess. I've granted they once might have been useful, but when no longer necessary they become excessive and removed. God planned it that way so we could tailor our brains to our preferred uses. Time to put on your slightly theistic thinking cap, which has appeared now and then in God-humanizing form, and try to see the theistic logic in my view.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Tuesday, April 27, 2021, 11:19 (1304 days ago) @ David Turell

DAVID: I don't accept your arguments. The excess cells were lightly used and once complexification organized very complex networks which handled heavy use, they were unnecessary and discarded.

dhw: You say you don’t accept my arguments, but then you proceed to repeat them almost word for word, except for calling the new cells “excess”! I suppose I’d better repeat that in my theory, the EXTRA (not “excess”) cells were added in response to new requirements. During the period of stasis there were no major (your "heavy") new requirements, and so they would then have continued to be used (with "light" complexification) for that new purpose and any other minor requirements, until 250,000 years later. Then new requirements led not to expansion but to enhanced complexification, which made some cells unnecessary. What do you disagree with?

DAVID: How we view the extra cells. I'll agree they might have been useful in the beginning, and I've given you a good reason why they gave us the ability to tailor our later use of our brains, and ended up as excess and jettisoned.

Over and over again you have argued that the new sapiens cells were excessive and brains overexpanded from the beginning. I’m delighted that you now agree that the cells were useful, which can only mean that the brain was NOT overexpanded. And over and over again I have explained that they only became “excessive” when enhanced complexification took over from expansion and proved so efficient that some cells were no longer needed. Welcome to my theory.

dhw: You are fixated on the idea that our brains were oversized, and all new cells were excessive....Once more, what logical flaw can you find in this theory?

DAVID: Your fixation is a total denial that extra cells removed means they were necessary. Irrational topsy-turvy reasoning. My version of your theory makes sense.

This is absurd. As I keep saying, the extra cells were necessary from the start. They only ceased to be necessary when enhanced complexification proved so efficient that they became redundant. I have bolded it above for you. I am delighted that you have now accepted my theory, but please don’t create such a silly distortion of it to justify your earlier opposition.

DAVID: We learned to use our big brains ourselves over lots of time.

dhw: I’ll take that as meaning that our ancestors did indeed have the autonomous ability to invent new tools.

DAVID: Of course they did. Habilis is named for his tools. Your point?

My point is that the autonomous ability to complexify and expand already existed prior to H. sapiens. There was no need for your God to perform operations to provide extra cells in anticipation of new requirements. The brain already worked autonomously as it does now, with cells RESPONDING to new requirements.

dhw: All expansions and complexifications must have reasons, as we know from the modern brain. So why would earlier brains NOT have complexified AND expanded in response to new requirements, as the modern brain does?

DAVID: I think all past brains responded exactly as ours. God-given oversized at each stage and complexified a bit. Our brain built on the past shows what happened in the past. That limits our theories to the facts we have. (dhw’s bold)

dhw: Again, I have no idea why you keep saying our brain was oversized, except that you are desperate to hold onto your idea that your God programmed or dabbled all changes IN ANTICIPATION of any requirements, whereas our brains show that the procedure is the opposite: our brains change IN RESPONSE to new requirements. Yes indeed, that limits our theories to the facts we have, despite your efforts to ignore those facts.

DAVID: Same irrational "Alice in Wonderland" nonsensical thought that extra cells that are removed are therefore useful and not excess.

Please stop pretending that I have proposed anything so silly. It is you who keep claiming that the brain was oversized (bolded above) because the cells were excessive (= not necessary)! The cells were useful from the beginning onwards and only became unnecessary when enhanced complexification took over.

DAVID: I've granted they once might have been useful, but when no longer necessary they become excessive and removed.

Correct. Once more, welcome to my theory.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Tuesday, April 27, 2021, 16:12 (1304 days ago) @ dhw

dhw: What do you disagree with?[/i]


DAVID: How we view the extra cells. I'll agree they might have been useful in the beginning, and I've given you a good reason why they gave us the ability to tailor our later use of our brains, and ended up as excess and jettisoned.

dhw: Over and over again you have argued that the new sapiens cells were excessive and brains overexpanded from the beginning. I’m delighted that you now agree that the cells were useful, which can only mean that the brain was NOT overexpanded. And over and over again I have explained that they only became “excessive” when enhanced complexification took over from expansion and proved so efficient that some cells were no longer needed. Welcome to my theory.

They were always excessive for final future use, no mater how you contort the descriptions


dhw: You are fixated on the idea that our brains were oversized, and all new cells were excessive....Once more, what logical flaw can you find in this theory?

DAVID: Your fixation is a total denial that extra cells removed means they were necessary. Irrational topsy-turvy reasoning. My version of your theory makes sense.

dhw: This is absurd. As I keep saying, the extra cells were necessary from the start.

It can also be said they were useful from the beginning for light use but not required for the heavier use later and dropped as excess. They were never meant to stay.


dhw: My point is that the autonomous ability to complexify and expand already existed prior to H. sapiens. There was no need for your God to perform operations to provide extra cells in anticipation of new requirements. The brain already worked autonomously as it does now, with cells RESPONDING to new requirements.

I agree past brains operated much like ours, but God gave us each step in bigger more complex brains. Brains did not grow themselves.

dhw: Again, I have no idea why you keep saying our brain was oversized, except that you are desperate to hold onto your idea that your God programmed or dabbled all changes IN ANTICIPATION of any requirements, whereas our brains show that the procedure is the opposite: our brains change IN RESPONSE to new requirements. Yes indeed, that limits our theories to the facts we have, despite your efforts to ignore those facts.

DAVID: Same irrational "Alice in Wonderland" nonsensical thought that extra cells that are removed are therefore useful and not excess.

dhw: Please stop pretending that I have proposed anything so silly. It is you who keep claiming that the brain was oversized (bolded above) because the cells were excessive (= not necessary)! The cells were useful from the beginning onwards and only became unnecessary when enhanced complexification took over.

DAVID: I've granted they once might have been useful, but when no longer necessary they become excessive and removed.

dhw: Correct. Once more, welcome to my theory.

I'm not following your theory. There can be no denying extra neurons were always present, and my interpretation grants they might have had some light use while they remained, but the excess neurons allowed us to remodel our brains to fit the heavy uses we learned to employ, language, abstract ideas, mathematics with invented number systems, etc. So heavily used brains are now 150 cc smaller. Making extras cells slightly useful in the beginning and then discarding them after complexification makes them an excess group of cells, used and then discarded

Evolution: more genomic evidence of pre-planning Part One

by dhw, Wednesday, April 28, 2021, 11:06 (1303 days ago) @ David Turell

dhw: Over and over again you have argued that the new sapiens cells were excessive and brains overexpanded from the beginning. I’m delighted that you now agree that the cells were useful, which can only mean that the brain was NOT overexpanded. And over and over again I have explained that they only became “excessive” when enhanced complexification took over from expansion and proved so efficient that some cells were no longer needed. Welcome to my theory.

DAVID: They were always excessive for final future use, no mater how you contort the descriptions.

A factory may need 100 workers until a new, more efficient process is developed, and then some workers will be made redundant. It is absurd to say that the redundant ones were always excessive for final future use. And so let me yet again explain my theory: the new cells were NECESSARY to meet a new requirement. They continued to be necessary to fulfil that requirement, would probably have continued to complexify on a small scale during the period of stasis, but when major new requirements arose and the brain did not/could not expand any more, complexification took over and was so efficient that some cells were no longer necessary. What are the contortions?

DAVID: It can also be said they were useful from the beginning for light use but not required for the heavier use later and dropped as excess. They were never meant to stay.

I propose that they were essential from the beginning, and continued to perform their essential function until…see the bold above. Redundancy is the result of improved methods, not some vague concept of destiny.

dhw: My point is that the autonomous ability to complexify and expand already existed prior to H. sapiens. There was no need for your God to perform operations to provide extra cells in anticipation of new requirements. The brain already worked autonomously as it does now, with cells RESPONDING to new requirements.

DAVID: I agree past brains operated much like ours, but God gave us each step in bigger more complex brains. Brains did not grow themselves.

If they operated much like ours, then they operated autonomously. Or are you now saying that your God pops in to complexify our brains (and expand the hippocampus) before we can think up our new ideas? In other words, if he exists, your God would have given earlier brains the same mechanism for autonomous complexification and expansion that we have now. I propose that the mechanism is cellular intelligence.

DAVID: I've granted they once might have been useful, but when no longer necessary they become excessive and removed.

dhw: Correct. Once more, welcome to my theory.

DAVID: I'm not following your theory. There can be no denying extra neurons were always present, and my interpretation grants they might have had some light use while they remained, but the excess neurons allowed us to remodel our brains to fit the heavy uses we learned to employ, language, abstract ideas, mathematics with invented number systems, etc.

They were not “excess” (= unnecessary) if they enabled us to remodel our brains! They only became “excess” when remodelling in the form of enhanced complexification was able to cope with all the new requirements with such efficiency that they were no longer needed.

DAVID: So heavily used brains are now 150 cc smaller. Making extras cells slightly useful in the beginning and then discarding them after complexification makes them an excess group of cells, used and then discarded.

Yet again: they were not “slightly useful” in the beginning. They were essential. If they hadn’t been essential, they would not have been added in the first place. And they would have continued to fulfil the same essential function until, as you rightly put it, complexification made them unnecessary or “excessive” to our needs. I make that four times in one post. Five times tomorrow?:-|

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Wednesday, April 28, 2021, 15:44 (1303 days ago) @ dhw

DAVID: They were always excessive for final future use, no matter how you contort the descriptions.

dhw: A factory may need 100 workers until a new, more efficient process is developed, and then some workers will be made redundant. It is absurd to say that the redundant ones were always excessive for final future use. And so let me yet again explain my theory: the new cells were NECESSARY to meet a new requirement. They continued to be necessary to fulfil that requirement, would probably have continued to complexify on a small scale during the period of stasis, but when major new requirements arose and the brain did not/could not expand any more, complexification took over and was so efficient that some cells were no longer necessary. What are the contortions?

The brain is not a factory with fixed machines. The brain was given innate plasticity so the excess cells could be jettisoned when those cells finally needed were reorganized into the best efficiency.


dhw: My point is that the autonomous ability to complexify and expand already existed prior to H. sapiens. There was no need for your God to perform operations to provide extra cells in anticipation of new requirements. The brain already worked autonomously as it does now, with cells RESPONDING to new requirements.

DAVID: I agree past brains operated much like ours, but God gave us each step in bigger more complex brains. Brains did not grow themselves.

dhw: If they operated much like ours, then they operated autonomously. Or are you now saying that your God pops in to complexify our brains (and expand the hippocampus) before we can think up our new ideas? In other words, if he exists, your God would have given earlier brains the same mechanism for autonomous complexification and expansion that we have now. I propose that the mechanism is cellular intelligence.

And I believe God speciates.


DAVID: I'm not following your theory. There can be no denying extra neurons were always present, and my interpretation grants they might have had some light use while they remained, but the excess neurons allowed us to remodel our brains to fit the heavy uses we learned to employ, language, abstract ideas, mathematics with invented number systems, etc.

dhw: They were not “excess” (= unnecessary) if they enabled us to remodel our brains! They only became “excess” when remodelling in the form of enhanced complexification was able to cope with all the new requirements with such efficiency that they were no longer needed.

How do yo know the excess cells played a role in deciding to discard themselves? I would think the remaining reorganized neurons did the job.


DAVID: So heavily used brains are now 150 cc smaller. Making extras cells slightly useful in the beginning and then discarding them after complexification makes them an excess group of cells, used and then discarded.

dhw: Yet again: they were not “slightly useful” in the beginning. They were essential. If they hadn’t been essential, they would not have been added in the first place. And they would have continued to fulfil the same essential function until, as you rightly put it, complexification made them unnecessary or “excessive” to our needs. I make that four times in one post. Five times tomorrow?:-|

If you would accept God's role the repeats are unnecessary. We will continue to interpret the known facts from different viewpoints. :-)

Evolution: more genomic evidence of pre-planning Part One

by dhw, Thursday, April 29, 2021, 08:30 (1303 days ago) @ David Turell

DAVID: They were always excessive for final future use, no matter how you contort the descriptions.

dhw: A factory may need 100 workers until a new, more efficient process is developed, and then some workers will be made redundant. It is absurd to say that the redundant ones were always excessive for final future use. And so let me yet again explain my theory: the new cells were NECESSARY to meet a new requirement. They continued to be necessary to fulfil that requirement, would probably have continued to complexify on a small scale during the period of stasis, but when major new requirements arose and the brain did not/could not expand any more, complexification took over and was so efficient that some cells were no longer necessary. What are the contortions?

DAVID: The brain is not a factory with fixed machines. The brain was given innate plasticity so the excess cells could be jettisoned when those cells finally needed were reorganized into the best efficiency.

An exact parallel to the plasticity of staffing: when a more efficient method is developed, excess staff are made redundant. Neither the original staff nor the original cells were excessive until a more efficient method took over from the original method.

DAVID: I agree past brains operated much like ours, but God gave us each step in bigger more complex brains. Brains did not grow themselves.

dhw: If they operated much like ours, then they operated autonomously. Or are you now saying that your God pops in to complexify our brains (and expand the hippocampus) before we can think up our new ideas? In other words, if he exists, your God would have given earlier brains the same mechanism for autonomous complexification and expansion that we have now. I propose that the mechanism is cellular intelligence.

DAVID: And I believe God speciates.

That is not an answer. You agree that the modern brain complexifies and in one case (hippocampus) expands autonomously, and past brains would have operated in the same way. Therefore (theistic version) your God’s role would have been to design the mechanism that gave all brains their autonomy. What method can you conceive of, other than cellular intelligence?

DAVID (taken from “Miscellany”): It is a mechanism coded into our DNA under God's control. As a result our cells look and act intelligently following God's implanted information.”

You have agreed that our brains complexify and expand autonomously. “Autonomy” does not mean “under God’s control”. “Coded into our DNA” and “implanted information” must therefore refer to the means whereby your God gave our brains that autonomy. In our next exchange, you even tell us that the neurons made the decision to jettison excess cells. God’s didn’t instruct them to do it. The cells did it. The point you make is irrelevant to the argument about “excess”, but in the context of intelligence, how else could cells take such decisions autonomously if they were not intelligent?

DAVID: There can be no denying extra neurons were always present, and my interpretation grants they might have had some light use while they remained, but the excess neurons allowed us to remodel our brains to fit the heavy uses we learned to employ, language, abstract ideas, mathematics with invented number systems, etc.

dhw: They were not “excess” (= unnecessary) if they enabled us to remodel our brains! They only became “excess” when remodelling in the form of enhanced complexification was able to cope with all the new requirements with such efficiency that they were no longer needed.

DAVID: How do you know the excess cells played a role in deciding to discard themselves? I would think the remaining reorganized neurons did the job.

I have not said which cells made the decision! I have only said that some cells were not needed when enhanced complexification coped with all the new requirements. Only then did they become “excess”, whereas you keep telling us they were “excess” right from the start.

DAVID: So heavily used brains are now 150 cc smaller. Making extras cells slightly useful in the beginning and then discarding them after complexification makes them an excess group of cells, used and then discarded.

dhw: Yet again: they were not “slightly useful” in the beginning. They were essential. If they hadn’t been essential, they would not have been added in the first place. And they would have continued to fulfil the same essential function until, as you rightly put it, complexification made them unnecessary or “excessive” to our needs. I make that four times in one post. Five times tomorrow? :-|

DAVID: If you would accept God's role the repeats are unnecessary. We will continue to interpret the known facts from different viewpoints. :-)

If you would accept your own agreement that past brains would have functioned in the same way as modern brains, by way of autonomous complexification and expansion, and your God would not have lumbered brains with unnecessary cells, and therefore his role would have been to design the mechanism that gave autonomy to the brain, I would not have to keep knocking down the straw men you keep erecting in order to justify your interpretation of God’s role in evolution. :-)

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Thursday, April 29, 2021, 16:58 (1302 days ago) @ dhw

DAVID: The brain is not a factory with fixed machines. The brain was given innate plasticity so the excess cells could be jettisoned when those cells finally needed were reorganized into the best efficiency.

dhw: An exact parallel to the plasticity of staffing: when a more efficient method is developed, excess staff are made redundant. Neither the original staff nor the original cells were excessive until a more efficient method took over from the original method.

Note you have used the word excess.

DAVID: And I believe God speciates.

dhw: That is not an answer. You agree that the modern brain complexifies and in one case (hippocampus) expands autonomously, and past brains would have operated in the same way. Therefore (theistic version) your God’s role would have been to design the mechanism that gave all brains their autonomy. What method can you conceive of, other than cellular intelligence?

I don't accept innate cellular intelligence. Cells give the appearance of intelligence as they follow intelligent instructions/information .


DAVID (taken from “Miscellany”): It is a mechanism coded into our DNA under God's control. As a result our cells look and act intelligently following God's implanted information.”

dhw: You have agreed that our brains complexify and expand autonomously. “Autonomy” does not mean “under God’s control”. “Coded into our DNA” and “implanted information” must therefore refer to the means whereby your God gave our brains that autonomy.

I've never agreed to species brain expansion as autonomous, only very local enlargement of already enlarged brains in a new species..

.dhw: In our next exchange, you even tell us that the neurons made the decision to jettison excess cells. God’s didn’t instruct them to do it. The cells did it. The point you make is irrelevant to the argument about “excess”, but in the context of intelligence, how else could cells take such decisions autonomously if they were not intelligent?


DAVID: There can be no denying extra neurons were always present, and my interpretation grants they might have had some light use while they remained, but the excess neurons allowed us to remodel our brains to fit the heavy uses we learned to employ, language, abstract ideas, mathematics with invented number systems, etc.

dhw: They were not “excess” (= unnecessary) if they enabled us to remodel our brains! They only became “excess” when remodelling in the form of enhanced complexification was able to cope with all the new requirements with such efficiency that they were no longer needed.

DAVID: How do you know the excess cells played a role in deciding to discard themselves? I would think the remaining reorganized neurons did the job.

Full misinterpretation again in the bold above. Our current neurons have a complexification mechanism, we both recognize, to do the job, a system designed by God.


dhw: I have not said which cells made the decision! I have only said that some cells were not needed when enhanced complexification coped with all the new requirements. Only then did they become “excess”, whereas you keep telling us they were “excess” right from the start.

I've given you the point they may have had light uses from the beginning, but were always intended by God to be excessive.


DAVID: So heavily used brains are now 150 cc smaller. Making extras cells slightly useful in the beginning and then discarding them after complexification makes them an excess group of cells, used and then discarded.

dhw: Yet again: they were not “slightly useful” in the beginning. They were essential. If they hadn’t been essential, they would not have been added in the first place. And they would have continued to fulfil the same essential function until, as you rightly put it, complexification made them unnecessary or “excessive” to our needs. I make that four times in one post. Five times tomorrow? :-|

DAVID: If you would accept God's role the repeats are unnecessary. We will continue to interpret the known facts from different viewpoints. :-)

dhw: If you would accept your own agreement that past brains would have functioned in the same way as modern brains, by way of autonomous complexification and expansion, and your God would not have lumbered brains with unnecessary cells, and therefore his role would have been to design the mechanism that gave autonomy to the brain, I would not have to keep knocking down the straw men you keep erecting in order to justify your interpretation of God’s role in evolution. :-)

I clearly see God's role.;-)

Evolution: more genomic evidence of pre-planning Part One

by dhw, Friday, April 30, 2021, 12:09 (1301 days ago) @ David Turell

DAVID: The brain is not a factory with fixed machines. The brain was given innate plasticity so the excess cells could be jettisoned when those cells finally needed were reorganized into the best efficiency.

dhw: An exact parallel to the plasticity of staffing: when a more efficient method is developed, excess staff are made redundant. Neither the original staff nor the original cells were excessive until a more efficient method took over from the original method.

DAVID: Note you have used the word excess.

Note: you have completely ignored the relevance of the image to our discussion: staff and cells only become excessive when a more efficient method (new machines for staff, enhanced complexification for cells) takes over from the original method. The point of the analogy was to explain to you how redundancy works. You still insist that the jettisoned staff/cells were excessive/redundant from the beginning, whereas I propose that in both cases they were essential from the beginning.

dhw: You agree that the modern brain complexifies and in one case (hippocampus) expands autonomously, and past brains would have operated in the same way. Therefore (theistic version) your God’s role would have been to design the mechanism that gave all brains their autonomy. What method can you conceive of, other than cellular intelligence?

DAVID: I don't accept innate cellular intelligence. Cells give the appearance of intelligence as they follow intelligent instructions/information.

You keep repeating this mantra, so let me repeat the point you keep dodging: following instructions is the exact opposite of autonomy. If you believe that the modern brain complexifies (and in one case expands) autonomously, i.e. without God dictating the thoughts etc. that cause its complexifications and expansion, what mechanism can you propose, other than cellular intelligence?

DAVID: I've never agreed to species brain expansion as autonomous, only very local enlargement of already enlarged brains in a new species.

We are not talking about species expansion but about the expansion of the human brain, and you have agreed that the hippocampus of modern sapiens expands autonomously, by which I mean your God does not perform operations or give new instructions to the modern hippocampus. And you have agreed that past brains would have functioned in the same way as modern brains. If your God gave us the mechanism for autonomous complexification and expansion, then the same mechanism would have been present in the brains of our ancestors. Please explain why you find this illogical.

dhw: In our next exchange, you even tell us that the neurons made the decision to jettison excess cells. God’s didn’t instruct them to do it. The cells did it. […] how else could cells take such decisions autonomously if they were not intelligent? [dhw's bold]

DAVID: Full misinterpretation again in the bold above. Our current neurons have a complexification mechanism, we both recognize, to do the job, a system designed by God.

And the complexification mechanism, like the mechanism that enables the hippocampus to expand, is autonomous! The cells make the decisions! And if God exists, then he would have designed the mechanism. You are developing a new technique: you claim that my argument is a misinterpretation, and then you echo it!

dhw: I have only said that some cells were not needed when enhanced complexification coped with all the new requirements. Only then did they become “excess”, whereas you keep telling us they were “excess” right from the start.

DAVID: I've given you the point they may have had light uses from the beginning, but were always intended by God to be excessive.

I’ve offered you the point that since (theistic version) complexification and expansion would have been the results of the autonomous processes designed by your God, the brain would not have produced the extra cells unless they were necessary at the time. And they would have continued to be necessary until enhanced complexification took over from expansion. And I still can't see why your God would have interfered with the autonomous mechanism he had designed, so that he could provide the brain with “excess” cells that were not necessary at the time, performed something called “light usage” (hardly worthy of 150cc), and later on would not be needed anyway.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Friday, April 30, 2021, 19:22 (1301 days ago) @ dhw

dhw: An exact parallel to the plasticity of staffing: when a more efficient method is developed, excess staff are made redundant. Neither the original staff nor the original cells were excessive until a more efficient method took over from the original method.

DAVID: Note you have used the word excess.

dhw: Note: you have completely ignored the relevance of the image to our discussion: staff and cells only become excessive when a more efficient method (new machines for staff, enhanced complexification for cells) takes over from the original method...You still insist that the jettisoned staff/cells were excessive/redundant from the beginning, whereas I propose that in both cases they were essential from the beginning.

Yes, we differ. I view the neurons as a planned excess, from God.


DAVID: I've never agreed to species brain expansion as autonomous, only very local enlargement of already enlarged brains in a new species.

dhw: We are not talking about species expansion but about the expansion of the human brain, and you have agreed that the hippocampus of modern sapiens expands autonomously, by which I mean your God does not perform operations or give new instructions to the modern hippocampus...Please explain why you find this illogical.

The modern hippocampus follows God's onboard implanted instructions to handle the need to memorize, for example, new abstract ideas as they appear. .


dhw: In our next exchange, you even tell us that the neurons made the decision to jettison excess cells. God’s didn’t instruct them to do it. The cells did it. […] how else could cells take such decisions autonomously if they were not intelligent? [dhw's bold]

DAVID: Full misinterpretation again in the bold above. Our current neurons have a complexification mechanism, we both recognize, to do the job, a system designed by God.

dhw: And the complexification mechanism, like the mechanism that enables the hippocampus to expand, is autonomous! The cells make the decisions! And if God exists, then he would have designed the mechanism. You are developing a new technique: you claim that my argument is a misinterpretation, and then you echo it!

No I haven't. Autonomous brain complexification is because the brain follows God's implanted genetic instructions exactly.


dhw: I have only said that some cells were not needed when enhanced complexification coped with all the new requirements. Only then did they become “excess”, whereas you keep telling us they were “excess” right from the start.

DAVID: I've given you the point they may have had light uses from the beginning, but were always intended by God to be excessive.

dhw: I’ve offered you the point that since (theistic version) complexification and expansion would have been the results of the autonomous processes designed by your God, the brain would not have produced the extra cells unless they were necessary at the time. And they would have continued to be necessary until enhanced complexification took over from expansion. And I still can't see why your God would have interfered with the autonomous mechanism he had designed, so that he could provide the brain with “excess” cells that were not necessary at the time, performed something called “light usage” (hardly worthy of 150cc), and later on would not be needed anyway.

I've previously explained God's planned excess cells allowed us free-willed humans to tailor our new big brain as we wished in the process of complexification as abstractions and other knowledge developed.

Evolution: more genomic evidence of pre-planning Part Two

by David Turell @, Friday, April 30, 2021, 21:41 (1301 days ago) @ David Turell

A study of tadpoles suggests the hypothalamus started its evolutionary journey with them:

https://advances.sciencemag.org/content/7/18/eabf7452?utm_campaign=toc_advances_2021-04...

"Abstract
The hypothalamus coordinates neuroendocrine functions in vertebrates. To explore its evolutionary origin, we describe integrated transcriptome/connectome brain maps for swimming tadpoles of Ciona, which serves as an approximation of the ancestral proto-vertebrate. This map features several cell types related to different regions of the vertebrate hypothalamus, including the mammillary nucleus, the arcuate nucleus, and magnocellular neurons. Coronet cells express melanopsin and share additional properties with the saccus vasculosus, a specialized region of the hypothalamus that mediates photoperiodism in nontropical fishes. Comparative transcriptome analyses identified orthologous cell types for mechanosensory switch neurons, and VP+ and VPR+ relay neurons in different regions of the mouse hypothalamus. These observations provide evidence that the hypothalamus predates the evolution of the vertebrate brain. We discuss the possibility that switch neurons, coronet cells, and FoxP+/VPR+ relay neurons comprise a behavioral circuit that helps trigger metamorphosis of Ciona larvae in response to twilight.

***

"The hypothalamus has long been considered to be an “ancient” region of the vertebrate brain. It is found in all vertebrates, from jawless fishes to humans (9–11). A homologous area is also thought to occur in invertebrate chordates such as cephalochordates. The hypothalamus controls homeostasis, metabolism, and reproductive functions through a variety of intricate interconnecting neural circuits. Previous studies suggested that coronet cells in the Ciona sensory vesicle correspond to a “proto-hypothalamus” and are homologous to dopaminergic neurons in the vertebrate hypothalamus. More recent studies show that coronet cells also have nondopaminergic neurosecretory activities, raising the possibility that cellular subfunctionalization produced multiple specialized cell types in the vertebrate hypothalamus.

"Here, we compare the expression of key marker genes and single-cell whole-transcriptome profiles in the Ciona sensory vesicle and mouse hypothalamus. These studies suggest that coronet cells are not the only rudiment of the vertebrate hypothalamus. We present evidence for additional similarities, including switch neurons (mammillary nucleus), FoxP+ relay neurons (RNs) (magnocellular neurons), and VP+ and VPR+ RNs (arcuate nucleus). These studies suggest that proto-vertebrates had a sophisticated hypothalamus with multiple cell types. We propose that a major function of the Ciona proto-hypothalamus is to trigger the onset of metamorphosis in response to twilight, similar to the regulation of photoperiodism by the saccus vasculosus of nontropical fishes.

***

"The similarities of coronet cells and associated neurons in Ciona with different cell types in the vertebrate hypothalamus suggest that the simple brain of Ciona contains a complex proto-hypothalamus. Previous studies identified coronet cells as a putative rudiment of the vertebrate hypothalamus. Here, we provided evidence for additional homologies, including switch neurons and three different RN lineages, FoxP+, and the sister lineages VP+ and VPR+.

***

"Regardless of function, our evidence for multiple hypothalamic cell types in Ciona suggests that the apparently simple sensory vesicle has an unexpectedly sophisticated blueprint for the evolution of the complex vertebrate brain. Future studies will leverage the vast explosion of single-cell datasets to explore the origins of the neuronal cell types of different parts of the brain."

Comment: Since present stages of evolution are all based on past designs, this study of the earliest forms leading to what is contained in our present brains is not surprising. God pre-plans His stages

Evolution: DNA storage in Archaea and eukaryotes differs

by David Turell @, Saturday, May 01, 2021, 16:17 (1300 days ago) @ David Turell

The new study:

https://science.sciencemag.org/content/372/6541/477.2?utm_campaign=ec_sci_2021-04-29&am...

"Only eukaryotes and archaea use histones to package their DNA. This observation has prompted suggestions of an evolutionary affinity between these two domains of life. However, there are many differences between the structure of histones between the domains. Bowerman et al. extended earlier work to show how archaeal histones store and unpack DNA. In eukaryotes, a packet of four pairs of histones wraps around every ∼147 base pairs of DNA in a structure called a nucleosome. By contrast, the archaeal equivalent of a nucleosome, the archaeasome, forms a histone core with more than four histone pairs. Archaeasomes can expand, in effect stretching the coil, to open up the DNA in a way that is very different from how this process occurs in eukaryotes."

Comment: the theory that similar DNA storage means we descended from Archaea is not supported by this study. The storage methods are very different, but somewhat similar in that we both use histones.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Saturday, May 01, 2021, 11:43 (1300 days ago) @ David Turell

dhw: …you have completely ignored the relevance of the image to our discussion: staff and cells only become excessive when a more efficient method (new machines for staff, enhanced complexification for cells) takes over from the original method...You still insist that the jettisoned staff/cells were excessive/redundant from the beginning, whereas I propose that in both cases they were essential from the beginning.

DAVID: Yes, we differ. I view the neurons as a planned excess, from God.

And yet you go on to tell us the vital function they performed:
DAVID: I've previously explained God's planned excess cells allowed us free-willed humans to tailor our new big brain as we wished in the process of complexification as abstractions and other knowledge developed.

How can they have been “excess” if they helped to give us the autonomous ability to work out our own ideas? That is not even “light” usage! But even this concession is only half the story. You have agreed that past brains functioned in the same way as modern brains, and so they already had the “free-willed” ability to complexify as their abstractions and other knowledge developed. On nothing like the scale of modern humans, but that is the natural course of development, as species of homo, just like each generation of sapiens, built on the discoveries of their ancestors. What you call our “excess” cells would of course have increased the potential for complexification, and they would have continued to exercise whatever new function made them necessary in the first place. (See “Miscellany” for more details.)They were just as much a part of the increased “tailoring” as the already existing cells, and only became redundant when enhanced complexification took over from expansion.

dhw: […] you have agreed that the hippocampus of modern sapiens expands autonomously, by which I mean your God does not perform operations or give new instructions to the modern hippocampus...Please explain why you find this illogical.

DAVID: The modern hippocampus follows God's onboard implanted instructions to handle the need to memorize, for example, new abstract ideas as they appear.

Since you agree that the modern brain works autonomously (“free-willed”), what you call “God’s onboard implanted instructions” can only comprise the mechanism which enables the hippocampus to memorize autonomously and the cerebral cortex to come up with its new ideas. What else could this mechanism be, other than the intelligence of the cells? Or do you really believe your God has given instructions for every idea sapiens has ever come up with, and has installed a programme instructing the hippocampus which ones to memorize?

DAVID: Autonomous brain complexification is because the brain follows God's implanted genetic instructions exactly.

Same again: What do the “implanted genetic instructions” consist of, if they are not the mechanism which enables the “free-willed” brain to think its own thoughts, make its own decisions, and work out its new ideas?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Saturday, May 01, 2021, 19:16 (1300 days ago) @ dhw

DAVID: Yes, we differ. I view the neurons as a planned excess, from God.

dhw: And yet you go on to tell us the vital function they performed:
DAVID: I've previously explained God's planned excess cells allowed us free-willed humans to tailor our new big brain as we wished in the process of complexification as abstractions and other knowledge developed.

dhw: How can they have been “excess” if they helped to give us the autonomous ability to work out our own ideas?

The excess cells are part of a tool supply for our brain to complexify itself tailored to our new needs. The mechanism picked and chose among the available cells to set up the five layer network in our frontal lobes. We do not know how certain neurons were picked and networked and others discarded. We don't know if the discarded played any active role in the process. The way the excess helped is it allowed for precise tailoring of needed networks by the complexification process. It is obvious the remaining neurons played an active role in the process, and more tha likely the excess cells were mainly passive. So much for your distorted view of what I theorize.

We cannot compare with past fossils, but our frontal lobe setup is nothing like the apes.

dhw: […] you have agreed that the hippocampus of modern sapiens expands autonomously, by which I mean your God does not perform operations or give new instructions to the modern hippocampus...Please explain why you find this illogical.

DAVID: The modern hippocampus follows God's onboard implanted instructions to handle the need to memorize, for example, new abstract ideas as they appear.

dhw: Since you agree that the modern brain works autonomously (“free-willed”), what you call “God’s onboard implanted instructions” can only comprise the mechanism which enables the hippocampus to memorize autonomously and the cerebral cortex to come up with its new ideas. What else could this mechanism be, other than the intelligence of the cells? Or do you really believe your God has given instructions for every idea sapiens has ever come up with, and has installed a programme instructing the hippocampus which ones to memorize?

We use our brains without God's current help, because of the way He set it up for us.. What are you smoking?


DAVID: Autonomous brain complexification is because the brain follows God's implanted genetic instructions exactly.

dhw: Same again: What do the “implanted genetic instructions” consist of, if they are not the mechanism which enables the “free-willed” brain to think its own thoughts, make its own decisions, and work out its new ideas?

I was discussing the complexification mechanism, nothing else. Of course we use our brain freely

Evolution: more genomic evidence of pre-planning Part One

by dhw, Sunday, May 02, 2021, 12:07 (1299 days ago) @ David Turell

DAVID: Yes, we differ. I view the neurons as a planned excess, from God.

dhw: And yet you go on to tell us the vital function they performed:

DAVID: I've previously explained God's planned excess cells allowed us free-willed humans to tailor our new big brain as we wished in the process of complexification as abstractions and other knowledge developed.

dhw: How can they have been “excess” if they helped to give us the autonomous ability to work out our own ideas?

DAVID: The excess cells are part of a tool supply for our brain to complexify itself tailored to our new needs.

You have repeated the core of my theory, except that once more you drag in "excess". The new cells do indeed “tailor” the brain to enable it to fulfil our new needs. Simple example: hunter has new idea: kill with weapon that can be thrown from a distance. New cells are necessary and are acquired as the brain “tailors itself” by designing, manufacturing and using new weapon. (The modern equivalent is the illiterate women’s brains “tailoring” themselves by complexification as the women learn to read.) All new cells will obviously enhance the range of complexification.

DAVID: The mechanism picked and chose among the available cells to set up the five layer network in our frontal lobes. We do not know how certain neurons were picked and networked and others discarded. We don't know if the discarded played any active role in the process.

All of which is irrelevant to the question of whether the new cells were essential in the first place, and we don’t even know if it was the new cells that were discarded.

DAVID: The way the excess helped is it allowed for precise tailoring of needed networks by the complexification process. It is obvious the remaining neurons played an active role in the process, and more than likely the excess cells were mainly passive. So much for your distorted view of what I theorize.

As above, if the new cells allowed the brain to meet the new requirement(s), they can't have been "excess", and they would have continued to perform the same essential function. I don’t know why you think new cells that continue to perform the function which made them necessary in the first place should suddenly stop functioning (“mainly passive”). It seems to me more than likely that the new cells added to our capacity for design, new thoughts, new ideas, and it could just as easily be the new cells that remained and some of the existing cells that proved to be redundant. So much for your distorted view of my theory. Nothing you have written above has the remotest connection to your own theory, which is that your God performed an operation on a group of Moroccans to insert cells which they did not need at the time (excess), were meant to prepare them for future use, but ultimately proved unnecessary.

DAVID: We cannot compare with past fossils, but our frontal lobe setup is nothing like the apes.

Relevance?

dhw: […] you have agreed that the hippocampus of modern sapiens expands autonomously, by which I mean your God does not perform operations or give new instructions to the modern hippocampus. […]

DAVID: The modern hippocampus follows God's onboard implanted instructions to handle the need to memorize, for example, new abstract ideas as they appear.

dhw: Since you agree that the modern brain works autonomously (“free-willed”), what you call “God’s onboard implanted instructions” can only comprise the mechanism which enables the hippocampus to memorize autonomously and the cerebral cortex to come up with its new ideas. What else could this mechanism be, other than the intelligence of the cells? Or do you really believe your God has given instructions for every idea sapiens has ever come up with, and has installed a programme instructing the hippocampus which ones to memorize?

DAVID: We use our brains without God's current help, because of the way He set it up for us. What are you smoking?

And what is the way he set it up for us, if it is not by endowing the cells with the intelligence to do their own thinking? I don’t smoke.

DAVID: Autonomous brain complexification is because the brain follows God's implanted genetic instructions exactly.

What do the “implanted genetic instructions” consist of? Please tell us what you think your God's instructions tell the autonomous brain to do.

Evolution: a two-celled ancient fossil

by David Turell @, Sunday, May 02, 2021, 16:08 (1299 days ago) @ dhw

One billion years old:

https://gizmodo.com/scientists-find-billion-year-old-fossil-life-something-1846792843

“'We have found a primitive spherical organism made up of an arrangement of two distinct cell types, the first step towards a complex multicellular structure,” said Charles Wellman, a paleobiologist at the University of Sheffield, in a university press release, adding that it’s “something which has never been described before in the fossil record.”

"The fossil is constituted by a stereoblast of tightly packed cells surrounded by a layer of sausage-shaped cells. It’s tough to determine exactly what the functions of the two different cell types were, though it’s possible they may have had some reproductive implications.


"In order for life to make the monumental shift from simple unicellular organisms to complex multicellular ones, “organisms had to evolve a genome that controlled the nature of cell division and how cells stick together and how they differentiate and segregate tissues,” said Paul Strother, a paleobiologist at Boston College and lead author of the new study, in a phone call. “The thing that’s exciting about this fossil is that even though it’s an extremely simple morphology, it clearly had the capabilities of some of these fundamental features needed to become multicellular.”

"Being so simple yet multicellular, this billion-year-old blob seems most closely related to the holozoan groups of Ichthyosporea and Pluriformea, some unicellular microorganisms, according to the researchers. Importantly, the rock deposit from which B. basieri emerged was a freshwater environment, as opposed to the marine environments typically linked to the emergence of complex life. Earlier discoveries have confirmed the existence of such ancient multicellular life in oceans, some dating back over two billion years; it now seems possible that more than one evolutionary pathway led to the first multicellular lifeforms." (my Bold)

Comment: it is certainly possible life went through this stage to reach full multicellularity. The bolded idea that more than one pathway was followed in evolution is just an example of convergence, a well-recognized event in evolution.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Sunday, May 02, 2021, 16:29 (1299 days ago) @ dhw

DAVID: The excess cells are part of a tool supply for our brain to complexify itself tailored to our new needs.

dhw: You have repeated the core of my theory, except that once more you drag in "excess". The new cells do indeed “tailor” the brain to enable it to fulfil our new needs. New cells are necessary and are acquired as the brain “tailors itself”

The new cells popped up 315,000 years ago, and little used until recently, as in language theoretically 70,000 years ago. I view 'acquired' in your statement, should be 'required'.

dhw: All new cells will obviously enhance the range of complexification.

Of course.


DAVID: The way the excess helped is it allowed for precise tailoring of needed networks by the complexification process. It is obvious the remaining neurons played an active role in the process, and more than likely the excess cells were mainly passive. So much for your distorted view of what I theorize.

dhw: As above, if the new cells allowed the brain to meet the new requirement(s), they can't have been "excess", and they would have continued to perform the same essential function. I don’t know why you think new cells that continue to perform the function which made them necessary in the first place should suddenly stop functioning (“mainly passive”).

You don't understand the concept of light use of the first sapiens frontal lobes. How much abstract thought occupied them? Zilch.

dhw: It seems to me more than likely that the new cells added to our capacity for design, new thoughts, new ideas, and it could just as easily be the new cells that remained and some of the existing cells that proved to be redundant.

With so many excess neurons it could be either/or.


DAVID: We use our brains without God's current help, because of the way He set it up for us. What are you smoking?

dhw: And what is the way he set it up for us, if it is not by endowing the cells with the intelligence to do their own thinking? I don’t smoke.

Yes, the cells had intelligent instructions as to how to complexify according to new needs.


DAVID: Autonomous brain complexification is because the brain follows God's implanted genetic instructions exactly.

dhw: What do the “implanted genetic instructions” consist of? Please tell us what you think your God's instructions tell the autonomous brain to do.

How to complexify to fit new uses. Our frontal lobes have a construction like no other living brain as a result. God designed our brain, giving it marvelous facility.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Monday, May 03, 2021, 12:47 (1298 days ago) @ David Turell

DAVID: The excess cells are part of a tool supply for our brain to complexify itself tailored to our new needs.

dhw: You have repeated the core of my theory, except that once more you drag in "excess". The new cells do indeed “tailor” the brain to enable it to fulfil our new needs. New cells are necessary and are acquired as the brain “tailors itself”

DAVID: The new cells popped up 315,000 years ago, and little used until recently, as in language theoretically 70,000 years ago. I view 'acquired' in your statement, should be 'required'.

No. The new cells are acquired as the brain “tailors itself”, because the existing quantity of cells is not sufficient to meet the new requirement. You simply cannot grasp the process I keep trying to describe: 1) new idea, 2) implementation of new idea requires new cells, 3)new cells continue to perform the function for which they were needed in the first place. Nobody knows what any of the new requirements were for the sapiens brain or for that of our predecessors, but I suppose I’d better repeat the list of possible candidates: bipedalism, new environmental conditions, new ideas, new tools or weapons, clothes, new social structures, use of fire, new ways of acquiring food etc. ALL of these would have required complexification, but if the existing quantity of cells could not do the job, then the number of cells had to be increased. What you call sapiens' “light use” would originally have been “heavy” use, and during the period of stasis the new sized brain continued to perform all its earlier functions plus the new one(s). However, not until 70,000 years ago (your figure) were there any new requirements that necessitated major changes, and it was only then that enhanced complexification took over from expansion and made some cells redundant. We don’t actually know which ones – they may NOT have been the cells that had been newly acquired by sapiens.

dhw: I don’t know why you think new cells that continue to perform the function which made them necessary in the first place should suddenly stop functioning (“mainly passive”).

DAVID: You don't understand the concept of light use of the first sapiens frontal lobes. How much abstract thought occupied them? Zilch.

You don’t understand the concept of cells RESPONDING to new requirements (as demonstrated in the modern brain). What do you count as “abstract” thought? Designing something that has never existed before has to begin with “abstract” thought (in pre-sapiens as well as in sapiens). If you mean philosophy, how the heck do you know what our predecessors thought? What concrete relics do you expect to find of philosophical thoughts that existed before the inventions of painting and writing?

dhw: It seems to me more than likely that the new cells added to our capacity for design, new thoughts, new ideas, and it could just as easily be the new cells that remained and some of the existing cells that proved to be redundant.

DAVID: With so many excess neurons it could be either/or.

So please stop making definitive statements about your God giving us “excess” cells at the start. What were then new cells could be hard at work today.

DAVID: We use our brains without God's current help, because of the way He set it up for us. What are you smoking?

dhw: And what is the way he set it up for us, if it is not by endowing the cells with the intelligence to do their own thinking? I don’t smoke.

DAVID: Yes, the cells had intelligent instructions as to how to complexify according to new needs.

I don’t know why instructions have to be called “intelligent”, but you are simply using different terms to describe what I have been proposing all along with my theistic version: your God designed the mechanism that enables cells to add to their number (expansion) or to create new connections between themselves (complexification). It is the cells themselves that autonomously register the new requirements and autonomously decide how to respond to them, i.e. your God does not do it for them. Being aware of new requirements and deciding how to meet them requires intelligence, which is what I propose (theistic version) would have been an integral part of your God’s original design of the first cells.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Monday, May 03, 2021, 17:50 (1298 days ago) @ dhw

DAVID: The new cells popped up 315,000 years ago, and little used until recently, as in language theoretically 70,000 years ago. I view 'acquired' in your statement, should be 'required'.

dhw: No. The new cells are acquired as the brain “tailors itself”, because the existing quantity of cells is not sufficient to meet the new requirement. You simply cannot grasp the process I keep trying to describe: 1) new idea, 2) implementation of new idea requires new cells, 3)new cells continue to perform the function for which they were needed in the first place.

The only evidence we have about the first sapiens brain is that it was much larger than previous brains and as it tailored itself to new uses it shrunk 150 cc taking excess neurons with it. I will grant you that all neurons until discarded had some useful activity. Discarded neurons means the brain came with an excess for future need.

dhw: We don’t actually know which ones – they may NOT have been the cells that had been newly acquired by sapiens.

You have forgotten only the hippocampus has the ability to add new neurons. And I view God has the lone ability to enlarge whole brains in new species.

dhw: You don’t understand the concept of cells RESPONDING to new requirements (as demonstrated in the modern brain). What do you count as “abstract” thought? Designing something that has never existed before has to begin with “abstract” thought (in pre-sapiens as well as in sapiens). If you mean philosophy, how the heck do you know what our predecessors thought? What concrete relics do you expect to find of philosophical thoughts that existed before the inventions of painting and writing?

Do you think early sapiens discussed general relativity theory? The original cells of sapiens new brain complexified by a God-given mechanism as they learned to use their new big brain. That is the "concept of cells RESPONDING to new requirements (as demonstrated in the modern brain)". We are in full agreement here.


dhw: So please stop making definitive statements about your God giving us “excess” cells at the start. What were then new cells could be hard at work today.

So what happened to the missing 150 cc ???


dhw: And what is the way he set it up for us, if it is not by endowing the cells with the intelligence to do their own thinking? I don’t smoke.

DAVID: Yes, the cells had intelligent instructions as to how to complexify according to new needs.

dhw: I don’t know why instructions have to be called “intelligent”, but you are simply using different terms to describe what I have been proposing all along with my theistic version: your God designed the mechanism that enables cells to add to their number (expansion) or to create new connections between themselves (complexification). It is the cells themselves that autonomously register the new requirements and autonomously decide how to respond to them, i.e. your God does not do it for them. Being aware of new requirements and deciding how to meet them requires intelligence, which is what I propose (theistic version) would have been an integral part of your God’s original design of the first cells.

I don't accept your theory. God speciates is my belief. Please note our current brain can only add hippocampus cells. Other enlargements are rearrangements of existing neurons through complexification for heavy new use

Evolution: more genomic evidence of pre-planning Part One

by dhw, Tuesday, May 04, 2021, 10:41 (1297 days ago) @ David Turell

DAVID: The only evidence we have about the first sapiens brain is that it was much larger than previous brains and as it tailored itself to new uses it shrunk 150 cc taking excess neurons with it. I will grant you that all neurons until discarded had some useful activity. Discarded neurons means the brain came with an excess for future need.

I don’t know what you mean by “taking excess neurons with it”. The brain shrunk 150 cc BECAUSE complexification (“tailoring”) made certain cells unnecessary. Your last sentence simply means that anyone with a crystal ball would have been able to forecast that hundreds of thousands of years later, certain hitherto essential cells would no longer be necessary.

dhw: We don’t actually know which ones – they may NOT have been the cells that had been newly acquired by sapiens.

DAVID: You have forgotten only the hippocampus has the ability to add new neurons. And I view God has the lone ability to enlarge whole brains in new species.

Another of your many non sequiturs. The hippocampus example tells us that even now the brain is capable of adding new neurons in response to new requirements, and so there is no reason to assume that it did not do precisely that in the past. This has nothing whatsoever to do with the fact that we do not know which sapiens cells became redundant as a result of enhanced complexification, and so it is absurd to say that what were new cells at the beginning became unnecessary later.

dhw: So please stop making definitive statements about your God giving us “excess” cells at the start. What were then new cells could be hard at work today.

DAVID: So what happened to the missing 150 cc ???

You know what happened to them – they “went missing”!!! But you don’t know which cells became unnecessary as a result of enhanced complexification, and so it is absurd to claim that your God deliberately popped in, and deposited an extra 150cc worth of cells in the brains of a few Moroccans, and then exactly the same 150cc went missing 250,000 years later. In any case, you have agreed that the new cells must have been useful, in which case they can’t have been “excess”.

DAVID: You don’t understand the concept of light use of the first sapiens frontal lobes. How much abstract thought occupied them. Zilch?

dhw: You don’t understand the concept of cells RESPONDING to new requirements (as demonstrated in the modern brain). What do you count as “abstract” thought? Designing something that has never existed before has to begin with “abstract” thought (in pre-sapiens as well as in sapiens). If you mean philosophy, how the heck do you know what our predecessors thought? What concrete relics do you expect to find of philosophical thoughts that existed before the inventions of painting and writing?

DAVID: Do you think early sapiens discussed general relativity theory?

Most modern sapiens can’t discuss general relativity theory! Why do you think anything less than general relativity constitutes “zilch”? All generations build on the “thoughts” of their ancestors. How do you know that no early sapiens ever wondered how we got here?

DAVID: The original cells of sapiens new brain complexified by a God-given mechanism as they learned to use their new big brain. That is the "concept of cells RESPONDING to new requirements (as demonstrated in the modern brain)". We are in full agreement here.

You have already agreed that past brains would have functioned in the same way as modern brains, and that complexification proceeds/proceeded without any input from your God, using (theistic version) a mechanism designed by your God. Since the modern hippocampus has expanded autonomously (unless you think your God has dabbled with it), it is not unreasonable to assume that we now have past and present autonomous complexification and expansion. Your comment is far from clear, but you appear to have accepted that the mechanism would have functioned by RESPONDING to new requirements, as demonstrated in the modern brain (and in contrast to your God performing operations in ANTICIPATION of new requirements). In that case, we are indeed in full agreement. And if cells were/are capable of autonomously making their own decisions both then and now, there is no reason at all to dismiss the possibility that they were given the same ability right from the start of life. Obviously still a theory, but can you fault the logic?

DAVID: I don't accept your theory. God speciates is my belief. Please note our current brain can only add hippocampus cells. Other enlargements are rearrangements of existing neurons through complexification for heavy new use.

Yes, our current brains complexify autonomously, and the hippocampus has expanded autonomously. How does that prove that although (theistic version) your God gave our cells the autonomous awareness of requirements and the ability to make their own decisions, he could not possibly have given earlier cells the same autonomous awareness and ability to make decisions? And do you disagree that autonomous awareness of requirements and autonomous decision-making denote autonomous intelligence?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Wednesday, May 05, 2021, 19:03 (1296 days ago) @ dhw

dhw: I don’t know what you mean by “taking excess neurons with it”. The brain shrunk 150 cc BECAUSE complexification (“tailoring”) made certain cells unnecessary. Your last sentence simply means that anyone with a crystal ball would have been able to forecast that hundreds of thousands of years later, certain hitherto essential cells would no longer be necessary.

You can couch it in any terms you wish but excess cells were on board the moment sapiens big brain arrived.

DAVID: You have forgotten only the hippocampus has the ability to add new neurons. And I view God has the lone ability to enlarge whole brains in new species.

dhw: The hippocampus example tells us that even now the brain is capable of adding new neurons in response to new requirements, and so there is no reason to assume that it did not do precisely that in the past.

All you can logically propose is previous brains could enlarge the hippocampus, but you want to stretch what we know.

dhw: This has nothing whatsoever to do with the fact that we do not know which sapiens cells became redundant as a result of enhanced complexification, and so it is absurd to say that what were new cells at the beginning became unnecessary later.

New or not, some excess cells were discarded. Keep straining to ignore an excess.

DAVID: So what happened to the missing 150 cc ???

dhw: You know what happened to them – they “went missing”!!! But you don’t know which cells became unnecessary as a result of enhanced complexification, and so it is absurd to claim that your God deliberately popped in, and deposited an extra 150cc worth of cells in the brains of a few Moroccans, and then exactly the same 150cc went missing 250,000 years later. In any case, you have agreed that the new cells must have been useful, in which case they can’t have been “excess”.

It is of no matter which cells were discarded. The brain ended up with an excess. The bold is your absurd interpretation. We cannot know which cells and it is of no matter as you struggle with my clear concept God added extra cells so we could tailor our brain to our free-willed new uses.


DAVID: Do you think early sapiens discussed general relativity theory?

dhw: Most modern sapiens can’t discuss general relativity theory! Why do you think anything less than general relativity constitutes “zilch”? All generations build on the “thoughts” of their ancestors. How do you know that no early sapiens ever wondered how we got here?

e know earlier sapiens had lots of Gods to cover all natural phenomena.


DAVID: The original cells of sapiens new brain complexified by a God-given mechanism as they learned to use their new big brain. That is the "concept of cells RESPONDING to new requirements (as demonstrated in the modern brain)". We are in full agreement here.

dhw:... Your comment is far from clear, but you appear to have accepted that the mechanism would have functioned by RESPONDING to new requirements, as demonstrated in the modern brain (and in contrast to your God performing operations in ANTICIPATION of new requirements). In that case, we are indeed in full agreement. And if cells were/are capable of autonomously making their own decisions both then and now, there is no reason at all to dismiss the possibility that they were given the same ability right from the start of life. Obviously still a theory, but can you fault the logic?

I've agreed in the past that earlier brains might well have had complexification mechanisms.


DAVID: I don't accept your theory. God speciates is my belief. Please note our current brain can only add hippocampus cells. Other enlargements are rearrangements of existing neurons through complexification for heavy new use.

dhw: Yes, our current brains complexify autonomously, and the hippocampus has expanded autonomously. How does that prove that although (theistic version) your God gave our cells the autonomous awareness of requirements and the ability to make their own decisions, he could not possibly have given earlier cells the same autonomous awareness and ability to make decisions? And do you disagree that autonomous awareness of requirements and autonomous decision-making denote autonomous intelligence?

My belief stands: God is only source of speciation and provided brains with the complexification instructions as information in the neurons' genomes. That provided the necessary automaticity.

Evolution: new forms require new information

by David Turell @, Wednesday, May 05, 2021, 22:45 (1296 days ago) @ David Turell

Darwinists invent ow it might happen:

https://evolutionnews.org/2021/04/information-from-nothing-darwinists-must-believe-it/

"Aaron Wacholder and Anne-Ruxandra Carvunis talk about how to get “new genes from borrowed parts.” In their article, innovation is a key word. It means new information that can perform a function. Where does innovation come from?

"The vast phenotypic diversity of life is in part a consequence of a continual process of genetic innovation. New genes, with distinct structures and capabilities, emerge regularly throughout evolutionary history. [Emphasis added.]

"There’s the assertion. Innovation emerges. Got it? It just emerges. It emerges regularly. Believe it because we say so.

"Making use of genomics technologies, researchers are beginning to form an understanding of the details of the processes by which new genes arise...Transposons are parasitic genomic elements that replicate by inserting copies of themselves in the host genome. Cosby et al. report how vertebrate genes have captured DNA transposon domains, generating new genes that encode new fusion proteins with distinct domain architectures. Fusion of transposon domains with host genes appears to be frequent, with 94 fusion events identified over tetrapod evolution. Transposon domain capture may be a common source of new genes and molecular innovation across the tree of life.

"What Rachel Cosby et al. actually demonstrate in their paper in Science is only some minimal kind of “regulatory innovation.” Their method relies on the shuffling of existing functions in transposons when spliced in with genes. This is about as hopeless as getting new meanings from paragraphs from two books that are cut and pasted in random ways.

"Our findings confirm that exon shuffling is a major evolutionary force generating genetic novelty. We provide evidence that DNA transposons promote exon shuffling by inserting transposase domains in new genomic contexts. This process provides a plausible path for the emergence of several ancient transcription factors with important developmental functions. By illustrating how a transcription factor and its dispersed binding sites can emerge simultaneously from a single transposon family, our results bolster the view that transposons are key players in the evolution of gene regulatory networks.

***

"Although gene birth through duplication has been extensively documented, how novel protein architectures and biological functions are born has remained poorly characterized. Here, we validate that exon shuffling is a major evolutionary force generating genetic novelty, and we provide evidence that DNA transposons fuel the process not only by supplying protein domains to assemble new protein architectures, but also, in many cases, by introducing the splice sites that enable the fusion process. Although these events must be relatively rare on an evolutionary time scale, the mobility of DNA transposons likely increases the probability of generating a functional gene via exon shuffling by introducing genetic material into new contexts. (my bold)

***

"The bottom line is that blind evolution is oblivious to function. It is not going to store up mutations in a useless strand waiting for it to hit upon some innovation, any more than a duplicated string of letters is going to happen upon some amazing new concept."

Comment: This is like shuffling cards. All that does is change the of new bridge hands. Where does the new necessary designing information come from? The entire article is worth reading as it shows most current Darwin theory makes up fairytales on faith of how powerful Darwin theory must be, because it is all has to be so correct. Reminds me of David Stove, the Australian philosopher who wrote a very critical book: Darwinian Fairytales. ,1995

Evolution: more genomic evidence of pre-planning Part One

by dhw, Thursday, May 06, 2021, 12:34 (1295 days ago) @ David Turell

dhw: I don’t know what you mean by “taking excess neurons with it”. The brain shrunk 150 cc BECAUSE complexification (“tailoring”) made certain cells unnecessary. Your last sentence simply means that anyone with a crystal ball would have been able to forecast that hundreds of thousands of years later, certain hitherto essential cells would no longer be necessary.

DAVID: You can couch it in any terms you wish but excess cells were on board the moment sapiens big brain arrived.

It is your theory that your God popped in to give us cells which we were no use. At the same time, you tell us that “God added extra cells so we could tailor our brain to our free-willed new uses.” If the extra cells enabled us to “tailor” our brain, how could they have been excessive? You still refuse to even consider the point that the brain RESPONDS to new requirements, and therefore it is perfectly logical to propose that the original addition 315,000 years ago was IN RESPONSE to a new requirement. The new cells (which you have grudgingly agreed must have had some “light” use) would have continued to perform their original function, and for all we know are still doing so, since we don’t know which cells BECAME excessive 250,000 years later, when enhanced complexification took over. Some of your post repeats the same muddle, so I will just repeat individual quotes before moving on:

DAVID: New or not, some excess cells were discarded. Keep straining to ignore an excess.

Some cells BECAME excessive after 250,000 years. Stop straining to equate the cells which BECAME unnecessary with the original cells which were necessary then and might still be necessary now.

DAVID:It is of no matter which cells were discarded. The brain ended up with an excess. The bold is your absurd interpretation. We cannot know which cells and it is of no matter as you struggle with my clear concept God added extra cells so we could tailor our brain to our free-willed new uses.

It matters because you keep claiming that your God gave us excessive cells 315,000 years ago. Yes, the brain ENDED UP with an excess, after complexification had rendered certain cells redundant, but we don’t know which ones. See above re "tailoring".

dhw: The hippocampus example tells us that even now the brain is capable of adding new neurons in response to new requirements, and so there is no reason to assume that it did not do precisely that in the past.

DAVID: All you can logically propose is previous brains could enlarge the hippocampus, but you want to stretch what we know.

Yes, my theory is an extrapolation from what we know: the current brain complexifies and expands autonomously in response to new requirements, and so it is not illogical to propose that it may have done the same in the past. On what knowledge do you base your theory that your God operated on past brains in order to insert unnecessary new cells for later use?

DAVID: Do you think early sapiens discussed general relativity theory?

dhw: Most modern sapiens can’t discuss general relativity theory! Why do you think anything less than general relativity constitutes “zilch”? All generations build on the “thoughts” of their ancestors. How do you know that no early sapiens ever wondered how we got here?

DAVID: We know earlier sapiens had lots of Gods to cover all natural phenomena.

So why did you claim that there was “zilch” abstract thought?

dhw: […] if cells were/are capable of autonomously making their own decisions both then and now, there is no reason at all to dismiss the possibility that they were given the same ability right from the start of life. Obviously still a theory, but can you fault the logic?

DAVID: I've agreed in the past that earlier brains might well have had complexification mechanisms.

You’ve forgotten your agreement that complexification works autonomously, and since the expansion of the modern hippocampus must also have been autonomous (unless God steps in and tells us what to remember), there is no reason to suppose that past expansion was not autonomous too.

dhw: And do you disagree that autonomous awareness of requirements and autonomous decision-making denote autonomous intelligence?

DAVID: My belief stands: God is only source of speciation and provided brains with the complexification instructions as information in the neurons' genomes. That provided the necessary automaticity.

NOT automaticity!!! Autonomy! And no matter how much you fiddle around with terms like instructions and information, what this boils down to is that the autonomy of cells is the result of your God providing brains with the mechanism that gave them their autonomy. That is the theistic version of my theory. Thank you for accepting it even though you think you have rejected it. Now perhaps you will answer the bolded question above.

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Thursday, May 06, 2021, 19:21 (1295 days ago) @ dhw

DAVID: You can couch it in any terms you wish but excess cells were on board the moment sapiens big brain arrived.

dhw: It is your theory that your God popped in to give us cells which we were no use. At the same time, you tell us that “God added extra cells so we could tailor our brain to our free-willed new uses.” If the extra cells enabled us to “tailor” our brain, how could they have been excessive?

Still trying to ignore the facts. I've changed and you don't notice. I've previously granted the cells which were eventually discarded may have had or did have light use 315,000 years ago. The extra neurons gave the complexity mechanism many alternate ways to form the new networks to fit our newly found uses as we developed new concrete and abstract thoughts, i.e., tailoring. So some of the extra were eventually used but the excess was discarded. Facts we clearly know.

dhw: we don’t know which cells BECAME excessive 250,000 years later, when enhanced complexification took over. Some of your post repeats the same muddle,

It is not a muddle. We don't need to know which neurons were discarded to understand the history and the logic of my explanation. The sapiens brain arrived bigger than it had to be to handle the eventual heavy use in the last 70,000 years. Some cells became excess. With my clear concept God added extra cells so we could tailor our brain to our free-willed new uses.[/i]


dhw: It matters because you keep claiming that your God gave us excessive cells 315,000 years ago. Yes, the brain ENDED UP with an excess, after complexification had rendered certain cells redundant,

Yes our big brain arrived with excess, redundant cells. We agree.


dhw: The hippocampus example tells us that even now the brain is capable of adding new neurons in response to new requirements, and so there is no reason to assume that it did not do precisely that in the past.

DAVID: All you can logically propose is previous brains could enlarge the hippocampus, but you want to stretch what we know.

dhw: Yes, my theory is an extrapolation from what we know: the current brain complexifies and expands autonomously in response to new requirements, and so it is not illogical to propose that it may have done the same in the past. On what knowledge do you base your theory that your God operated on past brains in order to insert unnecessary new cells for later use?

All we know and can theorize from is what we learn from our brain's history. Since past forms tend to advance complexity, I assume past brains did what our brain does less complexly.


DAVID: Do you think early sapiens discussed general relativity theory?

dhw: How do you know that no early sapiens ever wondered how we got here?[/i]

DAVID: We know earlier sapiens had lots of Gods to cover all natural phenomena.

dhw: So why did you claim that there was “zilch” abstract thought?

No, I've agreed some minor abstract thought in early sapiens. Erectus, who knows.


dhw: And do you disagree that autonomous awareness of requirements and autonomous decision-making denote autonomous intelligence?

DAVID: My belief stands: God is only source of speciation and provided brains with the complexification instructions as information in the neurons' genomes. That provided the necessary automaticity.

dhw: NOT automaticity!!! Autonomy! And no matter how much you fiddle around with terms like instructions and information, what this boils down to is that the autonomy of cells is the result of your God providing brains with the mechanism that gave them their autonomy. That is the theistic version of my theory. Thank you for accepting it even though you think you have rejected it. Now perhaps you will answer the bolded question above.

God's instructions allowed the cells to have autonomous actions following the given information with the cells God-given decoding ability.

Evolution: our cerebellum differs from apes

by David Turell @, Thursday, May 06, 2021, 22:05 (1295 days ago) @ David Turell

A new difference is discovered:

https://www.newscientist.com/article/2276936-brains-movement-control-centre-may-have-ha...

"The key to human evolution may have been at the back of our minds all along – literally. Some of the biggest biochemical differences between human brains and those of other primates are found in the cerebellum, a region at the rear of the brain that has often been overlooked in evolutionary studies.

"The finding adds to growing evidence that changes to the cerebellum have been crucial for the origin of the human mind.


"All backboned animals have a cerebellum, which is involved in controlling movement.

“'It’s not really associated with much that’s uniquely human,” says Elaine Guevara at Duke University in North Carolina. Instead, neuroscientists seeking to explain the evolution of our brains have tended to focus on the cortex, the thick outer layer of the forebrain – especially the prefrontal cortex, which underpins our ability to consciously decide what to do.

"In recent years, some neuroscientists have argued that the cerebellum has changed more than thought during human evolution, and that these changes may have been crucial.

***

"The key to human evolution may have been at the back of our minds all along – literally. Some of the biggest biochemical differences between human brains and those of other primates are found in the cerebellum, a region at the rear of the brain that has often been overlooked in evolutionary studies. (my bold)

"The finding adds to growing evidence that changes to the cerebellum have been crucial for the origin of the human mind.


"All backboned animals have a cerebellum, which is involved in controlling movement.

“It’s not really associated with much that’s uniquely human,” says Elaine Guevara at Duke University in North Carolina. Instead, neuroscientists seeking to explain the evolution of our brains have tended to focus on the cortex, the thick outer layer of the forebrain – especially the prefrontal cortex, which underpins our ability to consciously decide what to do.

"In recent years, some neuroscientists have argued that the cerebellum has changed more than thought during human evolution, and that these changes may have been crucial."

Comment: The cerebellum is a movement control center, allowing for precise coordination of all moving parts of our bodies. Think of how precisely we use our arms and fingers, for example in typing, violin and piano playing, etc. This finding is not a surprise. My bold above is a thoughtless conjecture. The frontal lobes do the decision making for the cerebellar actions. The cerebellar improvements were vital accompaniments.

Evolution: why some seals swim better

by David Turell @, Friday, May 07, 2021, 01:06 (1295 days ago) @ David Turell

New hydrodynamic studies of some seals show how they handle aquatic life so well:

https://cosmosmagazine.com/nature/marine-life/how-seals-adapted-to-move-through-water/?...

"Zoologist David Hocking, formerly of Monash University and now curator of vertebrate zoology and palaeontology at the Tasmanian Museum and Art Gallery, did, and says he has now helped “to solve an evolutionary riddle at the heart of seal evolution”.

"Seals and sea lions propel themselves through the water to catch their prey – but true seals (otariids) generally use their front flippers while eared seals (phocids) use their back feet, and the other limbs are used for steering.

"Originally, the profoundly different swimming styles were thought to reflect separate ancestries, but genetic analysis shows the pinnipeds come from the same group. A new study led by Hocking and published in Current Biology now attributes it to environmental adaptation over millions of years.

***

"Using computational fluid dynamics simulations, Hocking and colleagues revealed that wing-like flippers evolved in leopard seals that already swam with their back feet – presumably to give them extra speed for catching their preferred prey, notes senior author Alistair Evans.

***

"...leopard seals have greatly reduced their claws and stretched out the length of the flipper to form a more effective paddle for swimming. In doing so they have independently evolved wing-like flippers similar to those of the other main family of seals, the Otariidae, which includes the fur seals and sea lions.”

"It’s one of the first studies to closely examine seal flippers as biomechanical tools adapted for swimming, according to Hocking, and helps fill in some vast gaps left by a limited fossil record.

"The findings help shine a light on how the animals evolved their body and behaviour to adapt to marine life – an incredible feat. (my bold)

“'The switch from life on land to life in water is one of the biggest transitions a species can undergo in its evolution,” says Hocking. “This has happened multiple times, with groups like whales, sea turtles, sea cows and crocodiles, all evolving from land-dwelling ancestors that have adapted themselves for a life at sea.”

“'This is fundamental knowledge that helps us to understand how the huge diversity of life we see around us first evolved on our planet.'”

Comment: Typical Darwin think. We have no idea how these adaptations happened from a natural series of chance, random mutations. Note how the authors use purpose to explain the changes. Why not consider they were designed.

Evolution: underwater anole lizards

by David Turell @, Tuesday, July 27, 2021, 18:57 (1213 days ago) @ David Turell

A snout full of air:

https://www.sciencenews.org/article/anole-lizards-breathe-underwater-air-bubble-snout

"Some anole lizards have a newfound superpower: They can breathe underwater by trapping air in a bubble on their snouts. What’s more, these reptiles can stay submerged for nearly 20 minutes by rebreathing exhaled air in the bubble, a new study shows.

“'As anyone who has encountered one of these lizards can tell you, they dive underwater when they feel threatened,” says evolutionary biologist Chris Boccia of Queen’s University in Kingston, Canada. But how the lizards stay underwater for so long had been a mystery until now.

***

"While underwater, all of the anoles carried a bubble of air around their snouts and appeared to breathe the bubble in and out. But river-based lizards rebreathed more often and stayed submerged longer than their land-based relatives, Boccia, Mahler and colleagues report in the July 12 Current Biology.

***

"To stay submerged for long periods, the anoles may slow down their metabolism, reducing the need for oxygen, Boccia suspects. And as oxygen levels in the bubble drop and CO2 levels rise, the bubble may rebalance the levels by shedding CO2 into the water and uptaking dissolved oxygen, he says."

Comment: How the air gets there is sill unknown. We don 't know if this a trick their skin allows that they have discovered or a designed adaptation. But whatever, aquatic adaptation for air=breathing animals requires some magical anatomical changes.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Friday, May 07, 2021, 12:33 (1294 days ago) @ David Turell

DAVID: You can couch it in any terms you wish but excess cells were on board the moment sapiens big brain arrived.

dhw: […] If the extra cells enabled us to “tailor” our brain, how could they have been excessive?

DAVID: Still trying to ignore the facts. I've changed and you don't notice. I've previously granted the cells which were eventually discarded may have had or did have light use 315,000 years ago.

I keep pointing out that you have changed, and yet you still insist that you haven’t changed! Excess cells were not “on board” when modern sapiens arrived, because the cells were used! Some cells (not necessarily the new ones) BECAME excessive when enhanced complexification took over. Sadly, this will now have to be repeated over and over again.

DAVID: The extra neurons gave the complexity mechanism many alternate ways to form the new networks to fit our newly found uses as we developed new concrete and abstract thoughts, i.e., tailoring. So some of the extra were eventually used but the excess was discarded. Facts we clearly know.

Yes, some cells - we don't know which ones - BECAME excessive when the complexity mechanism tailored itself to meet the new requirements. Prior to that, they were all used, and so the new cells were not “excess” when they arrived, because they were needed at the time.

DAVID: The sapiens brain arrived bigger than it had to be to handle the eventual heavy use in the last 70,000 years. Some cells became excess. With my clear concept God added extra cells so we could tailor our brain to our free-willed new uses.

You have agreed that the new cells were used, so the brain was NOT bigger than it had to be at that time! Yes, some cells BECAME excessive when enhanced complexification met the new requirements (i.e. “tailored” the brain) and proved so efficient that some previously essential cells (they were used) were no longer essential.

DAVID: Yes our big brain arrived with excess, redundant cells. We agree.

We do NOT agree! They were NOT excess or redundant when they arrived! You have agreed that they were used! Please stop contradicting yourself!

DAVID: All you can logically propose is previous brains could enlarge the hippocampus, but you want to stretch what we know.

dhw: Yes, my theory is an extrapolation from what we know: the current brain complexifies and expands autonomously in response to new requirements, and so it is not illogical to propose that it may have done the same in the past. On what knowledge do you base your theory that your God operated on past brains in order to insert unnecessary new cells for later use?

DAVID: All we know and can theorize from is what we learn from our brain's history. Since past forms tend to advance complexity, I assume past brains did what our brain does less complexly.

Of course past brains would have been less complex. How does that come to mean that your God inserted unnecessary new cells for no immediate purpose, although in fact they were used? I also assume that past brains autonomously complexified and expanded (hippocampus) just as present brains do. Thank you for agreeing.

DAVID: Do you think early sapiens discussed general relativity theory?

dhw: How do you know that no early sapiens ever wondered how we got here?

DAVID: We know earlier sapiens had lots of Gods to cover all natural phenomena.

dhw: So why did you claim that there was “zilch” abstract thought?

DAVID: No, I've agreed some minor abstract thought in early sapiens. Erectus, who knows.

Thank you for withdrawing your silly statement that earlier brains had “zilch” abstract thought.

dhw: And do you disagree that autonomous awareness of requirements and autonomous decision-making denote autonomous intelligence?
[…]

DAVID: God's instructions allowed the cells to have autonomous actions following the given information with the cells God-given decoding ability.

In plain English, your God gave cells the ability to complexify and expand without his interference. These autonomous actions could only take place if cells were aware of requirements and were able to take the decisions necessary to meet those requirements. Once again, thank you for accepting my theory. Do you agree or disagree that autonomous awareness and decision-making denote intelligence?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Friday, May 07, 2021, 19:04 (1294 days ago) @ dhw
edited by David Turell, Friday, May 07, 2021, 19:12

DAVID: Still trying to ignore the facts. I've changed and you don't notice. I've previously granted the cells which were eventually discarded may have had or did have light use 315,000 years ago.

dhw: I keep pointing out that you have changed, and yet you still insist that you haven’t changed! Excess cells were not “on board” when modern sapiens arrived, because the cells were used! Some cells (not necessarily the new ones) BECAME excessive when enhanced complexification took over. Sadly, this will now have to be repeated over and over again.

You've simply agreed with me. We are both agreeing the cells were used, but eventually discarded as excess. What you object to is my concept of God knowing in advance those extra cells would become excess cells as we got to really use our brains and complexification tailored our brain to our preferred usages. A prime example of God's pre-planning


DAVID: The extra neurons gave the complexity mechanism many alternate ways to form the new networks to fit our newly found uses as we developed new concrete and abstract thoughts, i.e., tailoring. So some of the extra were eventually used but the excess was discarded. Facts we clearly know.

dhw: You have agreed that the new cells were used, so the brain was NOT bigger than it had to be at that time! Yes, some cells BECAME excessive when enhanced complexification met the new requirements (i.e. “tailored” the brain) and proved so efficient that some previously essential cells (they were used) were no longer essential.

DAVID: Yes our big brain arrived with excess, redundant cells. We agree.

dhw: We do NOT agree! They were NOT excess or redundant when they arrived! You have agreed that they were used! Please stop contradicting yourself!

No contradiction. God planned for them to be eventually discarded as you have just described


DAVID: All we know and can theorize from is what we learn from our brain's history. Since past forms tend to advance complexity, I assume past brains did what our brain does less complexly.

dhw: Of course past brains would have been less complex. How does that come to mean that your God inserted unnecessary new cells for no immediate purpose, although in fact they were used? I also assume that past brains autonomously complexified and expanded (hippocampus) just as present brains do. Thank you for agreeing.

You are simply trying to twist history away from God's actions.

dhw: And do you disagree that autonomous awareness of requirements and autonomous decision-making denote autonomous intelligence?
[…]

DAVID: God's instructions allowed the cells to have autonomous actions following the given information with the cells God-given decoding ability.

dhw: In plain English, your God gave cells the ability to complexify and expand without his interference. These autonomous actions could only take place if cells were aware of requirements and were able to take the decisions necessary to meet those requirements. Once again, thank you for accepting my theory. Do you agree or disagree that autonomous awareness and decision-making denote intelligence?

The cells knew what to do in complexification from God's instructions. Then yes, they could act in an autonomous fashion adding designed circuitry using some neurons from the excess of neurons God provided so humans could do free-will tailoring of their new big brain, with the brain eventually shrinking by 150 cc taking the excess neurons out of the picture. Makes perfect sense to one who believes in God.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Saturday, May 08, 2021, 13:27 (1293 days ago) @ dhw

DAVID: Still trying to ignore the facts. I've changed and you don't notice. I've previously granted the cells which were eventually discarded may have had or did have light use 315,000 years ago.

dhw: I keep pointing out that you have changed, and yet you still insist that you haven’t changed! Excess cells were not “on board” when modern sapiens arrived, because the cells were used! Some cells (not necessarily the new ones) BECAME excessive when enhanced complexification took over. Sadly, this will now have to be repeated over and over again.

DAVID: You've simply agreed with me. We are both agreeing the cells were used, but eventually discarded as excess.

It took a while to persuade you that the cells were used, and you are still telling us that they were excessive from the beginning (“excess cells were on board the moment sapiens big brain arrived”), which means they were NOT used! And you are still saying it was the new cells that were eventually discarded, whereas we don’t know which cells were discarded.

DAVID: What you object to is my concept of God knowing in advance those extra cells would become excess cells as we got to really use our brains and complexification tailored our brain to our preferred usages. A prime example of God's pre-planning.

Once more: we do not know if the extra cells later became excessive, and all you are saying here is that God knows the future. I don’t why you consider it good planning if your God gave us excess cells (though they were used, which means they were not excess!) knowing that they would become excess. More muddle.

DAVID: The sapiens brain arrived bigger than it had to be to handle the eventual heavy use in the last 70,000 years. Some cells became excess. With my clear concept God added extra cells so we could tailor our brain to our free-willed new uses.

dhw: You have agreed that the new cells were used, so the brain was NOT bigger than it had to be at that time! Yes, some cells BECAME excessive when enhanced complexification met the new requirements (i.e. “tailored” the brain) and proved so efficient that some previously essential cells (they were used) were no longer essential.

DAVID: Yes our big brain arrived with excess, redundant cells. We agree.

dhw: We do NOT agree! They were NOT excess or redundant when they arrived! You have agreed that they were used! Please stop contradicting yourself!

DAVID: No contradiction. God planned for them to be eventually discarded as you have just described.

I have not described any such thing! I have disputed your claim that they arrived “with excess”, I have not mentioned any divine plan, and we do not know which cells were discarded.

DAVID: All we know and can theorize from is what we learn from our brain's history. Since past forms tend to advance complexity, I assume past brains did what our brain does less complexly.

dhw: Of course past brains would have been less complex. How does that come to mean that your God inserted unnecessary new cells for no immediate purpose, although in fact they were used? I also assume that past brains autonomously complexified and expanded (hippocampus) just as present brains do. Thank you for agreeing.

DAVID: God's instructions allowed the cells to have autonomous actions following the given information with the cells God-given decoding ability.

dhw: In plain English, your God gave cells the ability to complexify and expand without his interference. These autonomous actions could only take place if cells were aware of requirements and were able to take the decisions necessary to meet those requirements. Once again, thank you for accepting my theory. Do you agree or disagree that autonomous awareness and decision-making denote intelligence?

DAVID: The cells knew what to do in complexification from God's instructions.

In other words, your God created the mechanism enabling them to decide what to do.

DAVID: Then yes, they could act in an autonomous fashion adding designed circuitry using some neurons from the excess of neurons God provided so humans could do free-will tailoring of their new big brain, with the brain eventually shrinking by 150 cc taking the excess neurons out of the picture. Makes perfect sense to one who believes in God.

You’ve almost grasped my theory, except that you are still insisting that the new cells were excessive – contradicting your agreement that they were used – and “the excess neurons” seems to suggest the discarded neurons were the same ones, whereas we don’t know which neurons BECAME excessive. Otherwise, the process itself makes perfect sense whether you believe in God or not. Meanwhile, do you agree or disagree that autonomous awareness and decision-making denote intelligence?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Saturday, May 08, 2021, 15:55 (1293 days ago) @ dhw

DAVID: You've simply agreed with me. We are both agreeing the cells were used, but eventually discarded as excess.

dhw: It took a while to persuade you that the cells were used, and you are still telling us that they were excessive from the beginning (“excess cells were on board the moment sapiens big brain arrived”), which means they were NOT used! And you are still saying it was the new cells that were eventually discarded, whereas we don’t know which cells were discarded.


That 150 cc of cells were eventually discarded can only mean they were excessive for future use. It doesn't matter which cells were discarded as beside the point of this discussion. Lightly used cells became useless and were removed by complexification.


DAVID: What you object to is my concept of God knowing in advance those extra cells would become excess cells as we got to really use our brains and complexification tailored our brain to our preferred usages. A prime example of God's pre-planning.

dhw: Once more: we do not know if the extra cells later became excessive,....More muddle.

Your muddle. There was shrinkage after complexification tailored our brain to our use creating excess cells/neurons.

dhw: We do NOT agree! They were NOT excess or redundant when they arrived! You have agreed that they were used! Please stop contradicting yourself!

DAVID: No contradiction. God planned for them to be eventually discarded as you have just described.

dhw: I have not described any such thing! I have disputed your claim that they arrived “with excess”, I have not mentioned any divine plan, and we do not know which cells were discarded.

It is of no matter which ones were removed. Strawman.

DAVID: God's instructions allowed the cells to have autonomous actions following the given information with the cells God-given decoding ability.

dhw: In plain English, your God gave cells the ability to complexify and expand without his interference. These autonomous actions could only take place if cells were aware of requirements and were able to take the decisions necessary to meet those requirements. Once again, thank you for accepting my theory. Do you agree or disagree that autonomous awareness and decision-making denote intelligence?

DAVID: The cells knew what to do in complexification from God's instructions.

dhw: In other words, your God created the mechanism enabling them to decide what to do.

Of course.


DAVID: Then yes, they could act in an autonomous fashion adding designed circuitry using some neurons from the excess of neurons God provided so humans could do free-will tailoring of their new big brain, with the brain eventually shrinking by 150 cc taking the excess neurons out of the picture. Makes perfect sense to one who believes in God.

dhw: You’ve almost grasped my theory, except that you are still insisting that the new cells were excessive – contradicting your agreement that they were used – and “the excess neurons” seems to suggest the discarded neurons were the same ones, whereas we don’t know which neurons BECAME excessive. Otherwise, the process itself makes perfect sense whether you believe in God or not. Meanwhile, do you agree or disagree that autonomous awareness and decision-making denote intelligence?

Future loss of neurons means the big brain started bigger and then shrunk with new uses and complexification discarded excess neurons. Didn't the brain shrink? The intelligence in your question is from the intelligent instructions the brain cells followed given by God.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Sunday, May 09, 2021, 14:06 (1292 days ago) @ David Turell

dhw: It took a while to persuade you that the cells were used, and you are still telling us that they were excessive from the beginning (“excess cells were on board the moment sapiens big brain arrived”), which means they were NOT used! And you are still saying it was the new cells that were eventually discarded, whereas we don’t know which cells were discarded.

DAVID: That 150 cc of cells were eventually discarded can only mean they were excessive for future use.

Correct. 150 cc of cells (we don't know which cells) were discarded when they eventually BECAME excessive for future use. This is in direct contrast to your constantly repeated assertion that the cells were already excessive “the moment sapiens big brain arrived”.

DAVID: It doesn't matter which cells were discarded as beside the point of this discussion. Lightly used cells became useless and were removed by complexification.

It matters because of your constantly repeated assertion that the cells your God planted in the brains of the sleeping Moroccans were excessive at the beginning (“Our big brain arrived with excess, redundant cells”) and that the same cells were discarded later (“God planned for them to be eventually discarded”) 1) The new cells were not excessive at the beginning, because you agree that they were used, and 2) we do not know if the new cells ever became excessive.

DAVID: What you object to is my concept of God knowing in advance those extra cells would become excess cells […] as we got to really use our brains and complexification tailored our brain to our preferred usages. A prime example of God's pre-planning.

dhw: Once more: we do not know if the extra cells later became excessive,....More muddle.

DAVID: Your muddle. There was shrinkage after complexification tailored our brain to our use creating excess cells/neurons.

Correct. Once more: some cells (we don’t know which ones) BECAME redundant AFTER complexification had tailored our brain to cope with new requirements. The new cells did not arrive as “excess, redundant”.

DAVID: God's instructions allowed the cells to have autonomous actions following the given information with the cells God-given decoding ability.

dhw: In plain English, your God gave cells the ability to complexify and expand without his interference. These autonomous actions could only take place if cells were aware of requirements and were able to take the decisions necessary to meet those requirements. Once again, thank you for accepting my theory. Do you agree or disagree that autonomous awareness and decision-making denote intelligence?

DAVID: The cells knew what to do in complexification from God's instructions.

dhw: In other words, your God created the mechanism enabling them to decide what to do.

DAVID: Of course.

dhw: So there is a mechanism which enables cells to be aware of requirements and to make their own decisions. Do you agree or disagree that these autonomous abilities denote intelligence? [..] (See below)

DAVID: […]Future loss of neurons means the big brain started bigger and then shrunk with new uses and complexification discarded excess neurons. Didn't the brain shrink?

Of course if the brain shrunk it was bigger before it shrunk! And I have been telling you for months that it shrunk because the efficiency of enhanced complexification made certain cells redundant – in direct contrast to your constantly repeated claim that the new cells were redundant from the start and those same cells were discarded later.

DAVID: The intelligence in your question is from the intelligent instructions the brain cells followed given by God.

Same woolly “intelligent instructions” as in the following (from “Miscellany”):

Plants sense what’s happening
dhw: If plants are sentient. can work out solutions and communicate with other plants, I’d say that = a form of intelligence.

DAVID: Or simply following God's intelligent instructions.

Please be more precise. Do your God’s “intelligent instructions” present plants with the exact solution to every problem they will ever encounter, or with the means of finding their own solutions and taking their own decisions?

Evolution: more genomic evidence of pre-planning Part One

by David Turell @, Sunday, May 09, 2021, 15:37 (1292 days ago) @ dhw

DAVID: What you object to is my concept of God knowing in advance those extra cells would become excess cells […] as we got to really use our brains and complexification tailored our brain to our preferred usages. A prime example of God's pre-planning.

dhw: Once more: we do not know if the extra cells later became excessive,....More muddle.

DAVID: Your muddle. There was shrinkage after complexification tailored our brain to our use creating excess cells/neurons.

dhw: Correct. Once more: some cells (we don’t know which ones) BECAME redundant AFTER complexification had tailored our brain to cope with new requirements. The new cells did not arrive as “excess, redundant”.

The major expansion from erectus to sapiens was frontal lobes. The other areas of the brain, as in all other animals with brains, have to do with running the bodies motion. picking up incoming sensations, stimulating reproduction. The reduction from new uses was also frontal lobe dealing with abstractive thought. The hippocampus grew.


dhw: So there is a mechanism which enables cells to be aware of requirements and to make their own decisions. Do you agree or disagree that these autonomous abilities denote intelligence? [..] (See below)

DAVID: […]Future loss of neurons means the big brain started bigger and then shrunk with new uses and complexification discarded excess neurons. Didn't the brain shrink?

dhw: Of course if the brain shrunk it was bigger before it shrunk! And I have been telling you for months that it shrunk because the efficiency of enhanced complexification made certain cells redundant – in direct contrast to your constantly repeated claim that the new cells were redundant from the start and those same cells were discarded later.

We don't know which were mew cells and don't know if they were the ones discarded. Excess cells were available for use from the beginning of the sapiens brain. That is my key point. Since complexification got rid of 150 cc of cells, old or new is of no matter.


DAVID: The intelligence in your question is from the intelligent instructions the brain cells followed given by God.

dhw: Same woolly “intelligent instructions” as in the following (from “Miscellany”):

Plants sense what’s happening
dhw: If plants are sentient. can work out solutions and communicate with other plants, I’d say that = a form of intelligence.

DAVID: Or simply following God's intelligent instructions.

dhw: Please be more precise. Do your God’s “intelligent instructions” present plants with the exact solution to every problem they will ever encounter, or with the means of finding their own solutions and taking their own decisions?

God speciates and allows them to create minor necessary adaptions through Lamarck-like methylation of DNA, microevolution.

Evolution: more genomic evidence of pre-planning Part One

by dhw, Monday, May 10, 2021, 13:01 (1291 days ago) @ David Turell

dhw: Correct. Once more: some cells (we don’t know which ones) BECAME redundant AFTER complexification had tailored our brain to cope with new requirements. The new cells did not arrive as “excess, redundant”.

DAVID: The major expansion from erectus to sapiens was frontal lobes. The other areas of the brain, as in all other animals with brains, have to do with running the bodies motion. picking up incoming sensations, stimulating reproduction. The reduction from new uses was also frontal lobe dealing with abstractive thought. The hippocampus grew.

Thank you for this description of what happened. I am delighted to see that you are no longer insisting that the new cells were already redundant when they arrived, or that they were the cells that became redundant after enhanced complexification. We now appear to be in agreement.

dhw: So there is a mechanism which enables cells to be aware of requirements and to make their own decisions. Do you agree or disagree that these autonomous abilities denote intelligence? [..] (See below)

DAVID: […]Future loss of neurons means the big brain started bigger and then shrunk with new uses and complexification discarded excess neurons. Didn't the brain shrink?

dhw: Of course if the brain shrunk it was bigger before it shrunk! And I have been telling you for months that it shrunk because the efficiency of enhanced complexification made certain cells redundant – in direct contrast to your constantly repeated claim that the new cells were redundant from the start and those same cells were discarded later.

DAVID: We don't know which were new cells and don't know if they were the ones discarded.

Correct. Thank you for agreeing.

DAVID: Excess cells were available for use from the beginning of the sapiens brain. That is my key point.

Back you go to your insistence that the new cells were excess. You have agreed that they were used. If they were used, they were not excess!

DAVID: Since complexification got rid of 150 cc of cells, old or new is of no matter.

It was you who insisted that the new cells were redundant from the beginning, and that this tied in with them being the cells which were discarded later. You have now acknowledged that the new cells were not redundant at the beginning, and we do not know which cells were made redundant. That should be the end of this particular discussion.

DAVID: The intelligence in your question is from the intelligent instructions the brain cells followed given by God.

dhw: Same woolly “intelligent instructions” as in the following (from “Miscellany”):

Plants sense what’s happening

dhw: If plants are sentient. can work out solutions and communicate with other plants, I’d say that = a form of intelligence.

DAVID: Or simply following God's intelligent instructions.

dhw: Please be more precise. Do your God’s “intelligent instructions” present plants with the exact solution to every problem they will ever encounter, or with the means of finding their own solutions and taking their own decisions?

DAVID: God speciates and allows them to create minor necessary adaptions through Lamarck-like methylation of DNA, microevolution.

Not what I was asking. If an organism is aware of conditions (sentient), works out solutions to new problems, and communicates with other organisms, would you agree that these abilities denote a form of autonomous intelligence, or do you believe your God gives them “intelligent instructions” on how to solve each new problem and what to “tell” other plants?

Evolution: new forms require new genes

by David Turell @, Wednesday, May 12, 2021, 23:54 (1289 days ago) @ dhw

An obvious requirement according to these papers:

https://evolutionnews.org/2021/05/did-the-origin-of-animals-require-new-genes/

"Recent studies show that many genes typically associated with metazoan functions actually pre-date animals themselves, supporting functional co-option of ‘unicellular genes’ during the genesis of metazoans.

***

"However, the role of genome novelty in animal origins has not been fully evaluated. We hypothesize that genomic novelty had a major impact in this transition, particularly involving biological functions which are hallmarks of animal multicellularity (gene regulation, signalling, cell adhesion, and cell cycle). Here we apply a comparative genomics approach using sophisticated methods, newly developed programs, and a comprehensive taxon sampling. The reconstruction of the ancestral genome of the last common ancestor of animals shows a set of biological functions similar to other eukaryote ancestors, while revealing an unexpected expansion of gene diversity. These analyses also highlight 25 groups of genes only found in animals that are highly retained in all their genomes, with essential functions linked to animal multicellularity.

***

"Thus, the first animal genome was not only showing a higher proportion of Novel HG [homology groups], but these also perform major multicellular functions in the modern fruit fly genome. The implication is that the transition was accompanied by an increase of genomic innovation, including many new, divergent, and subsequently ubiquitous genes encoding regulatory functions associated with animal multicellularity.

https://www.nature.com/articles/s41467-018-04136-5.pdf

And another paper with the same point: extra genes make new species:

https://elifesciences.org/articles/45530

"Abstract
The Cambrian explosion was a unique animal radiation ~540 million years ago that produced the full range of body plans across bilaterians. The genetic mechanisms underlying these events are unknown, leaving a fundamental question in evolutionary biology unanswered. Using large-scale comparative genomics and advanced orthology evaluation techniques, we identified 157 bilaterian-specific genes. They include the entire Nodal pathway, a key regulator of mesoderm development and left-right axis specification; components for nervous system development, including a suite of G-protein-coupled receptors that control physiology and behaviour, the Robo-Slit midline repulsion system, and the neurotrophin signalling system; a high number of zinc finger transcription factors; and novel factors that previously escaped attention. Contradicting the current view, our study reveals that genes with bilaterian origin are robustly associated with key features in extant bilaterians, suggesting a causal relationship."

Comment: this is opposite to Behe and everything new requires genes removed, but remember we discovered Behe found this is was true only for species adaptation.

Evolution: copper conversion using bacteria

by David Turell @, Saturday, April 24, 2021, 19:26 (1307 days ago) @ dhw

Bacteria found in copper mines have a protective metabolism which isolates toxic copper atoms:

https://phys.org/news/2021-04-efficient-safer-alternative-sourcing-copper.html

"In their co-authored paper, "Copper Mining Bacteria: Converting toxic copper ions into a stable single atom copper," their research demonstrates how copper-resistant bacterium from a copper mine in Brazil convert copper sulfate ions into zero-valent metallic copper.

"'The idea of having bacteria in mines is not new, but the unanswered question was: what are they doing in the mines?" Robles said. "By putting the bacteria inside an electronic microscope, we were able to figure out the physics and analyze it. We found out the bacteria were isolating single atom copper. In terms of chemistry, this is extremely difficult to derive. Typically, harsh chemicals are used in order to produce single atoms of any element. This bacterium is creating it naturally that is very impressive."

"As useful as copper is, the process of mining the metal often leads to toxic exposures and challenges on drawing out substantial volume for commercial use. Approximately one billion tons of copper are estimated in global reserves, according to the Copper Development Association Inc., with roughly 12.5 million metric tons per year mined. This aggregates to roughly 65 years of remaining reserves. Part of the supply challenge comes from limited available copper in high concentration in the earth's crust, but the other challenge is the exposure to sulfur dioxide and nitrogen dioxide in the copper smelting and production process to concentrate the metal into useful quantities.

"'The novelty of this discovery is that microbes in the environment can easily transform copper sulfate into zero valent single atom copper. This is a breakthrough because the current synthetic process of single atom zerovalent copper is typically not clean, it is labor intensive and expensive," Rodrigues said.

"'The microbes utilize a unique biological pathway with an array of proteins that can extract copper and convert it into single-atom zero-valent copper. The aim of the microbes is to create a less toxic environment for themselves by converting the ionic copper into single-atom copper, but at the same time they make something that is beneficial for us too."

***

"'We have only worked with one bacterium, but that may not be the only one out there that performs a similar function," Rodrigues concluded. "The next step for this particular research is harvesting the copper from these cells and using it for practical applications.'"

Comment: Bacteria are here to be useful in many ways. They have been given many metabolic pathways to live in extreme environments, and we humans can use those abilities.

Evolution: more genomic evidence of pre-planning 3

by David Turell @, Wednesday, April 07, 2021, 19:16 (1324 days ago) @ dhw

dhw: How huge is “huge”? [...]

DAVID: Our current brain averages 1,200 cc+, so our enlargement of 200 cc is at 20% of the last size, quite a huge addition for a previous one lasting a couple millions of years.

Three websites that disagree:
Homo erectus Vs. Homo-Sapien: General Difference - Viva ...
https://vivadifferences.com/homo-erectus-vs-homo-sapien/

"The brain capacity was between 900 and 1200 cubic centimeters.."

I've reviewed the next one:


The IQ & brain size of Homo erectus | Pumpkin Person
https://pumpkinperson.com/2014/10/02/the-iq-brain-size-of-homo-erectus

So near the end of their run, when Homo erectus averaged 1,186 cc….."

Why did you leave out the rest of the paragraph:

According to research cited by scholar Richard Lynn, Homo erectus emerged 1.7 million years ago with an average brain size of 885 cc and by 200,000 years ago, their brains had increased to 1,186 cc. How does this compare to modern Western brains? Data from scholar J.P. Rushton shows that Caucasian enlisted men in the U.S. army have a mean cranial capacity of 1468 (Standard Deviation (SD) = 91) and for Caucasian women the mean and SD are 1284 and 90 respectively. From here it can be deduced that a sex-combined sample (that was 50% men, 50% women) would have a mean and SD of 1376 and 137 respectively.

Can't we have fair play in te4h quotes given? I'm disappointed.

Evolution: more genomic evidence of pre-planning 1

by David Turell @, Wednesday, April 07, 2021, 19:26 (1324 days ago) @ dhw

dhw: How huge is “huge”? [...]

And another which I referred to earlier but can’t find now:
"The upper part of the maximum estimated range for H. erectus endocranial capacity (1,200 cubic cm) thus overlaps with the lower values expected for Homo sapiens."

I can't locate it either.


dhw: Please stop harping on about a huge leap. Our current size is no greater than that of late erectus.'

I'll harp as much as I can. You have offered no real proof of your position about size while studiously ignoring function.

Survival
dhw: Whether your God designs all the adaptations and innovations makes no difference. If he designs them, it is in order for the organisms to go on living. There is no conflict between the two theories: in both, the purpose of the adaptations and innovations that lead to evolution is to improve chances of survival, as proposed by Darwin.

DAVID: In the sense you are interpreting 'survival' you are correct, but it voids m y point that the driving force is God, and therefore survi val is guaranteed, not a struggle.

dhw: How can survival be “guaranteed” when all organisms die, and 99% of species have become extinct? Evolution does not mean “life”, it means adaptations and innovations which are intended to improve chances of survival and which lead to new species. And EVERY species struggles to survive, whether your God designs their adaptations/innovations or not. Why else would they try to eat and to avoid being eaten?

All living organisms want to live, but I don't see humans struggling to live as wild animals have to do. It seems God favored us over them. As for 99%, they have to go to make room, and are discarded as less complex models of evolutionary advances. God guarantees what He wishes to guarantee. Obvious.

Evolution: more genomic evidence of pre-planning

by David Turell @, Monday, February 15, 2021, 22:29 (1375 days ago) @ dhw

DAVID: We appeared with different brains about 250,000 years after Neanderthals. Undoubtedly we had very different brain genes at that point. That they may have modified somewhat since our arrival is totally beside the point. We were never Neanderthal.

dhw: Neanderthals died out about 40,000 years ago, and interbred with sapiens. I’m asking when the 61 different sapiens genes might have appeared. I’m not saying we were once Neanderthal!

dhw: In any case, we have been over this a thousand times: nobody knows how brain changes occurred in the past. But we agreed that there was a long period of stasis between the arrival of the sapiens brain and the burst of activity that produced our current advanced civilization. This is consistent with the even longer periods of stasis that occurred between earlier stages of brain change. I have proposed that each brain change is the result of some new activity or requirement (as evidenced by changes that take place in the modern brain), whereas you propose your God stepped in and performed operations on groups of hominins and homos before they engaged in new activities. I really don’t know why we have to go over all this again.

DAVID: The point is preparatory changes in DNA.

dhw: The point is that sapiens has some genes that were not present in Neanderthal. Nobody says anything about “preparatory”. I’m trying to work out what the article is meant to prove. As far as our discussions are concerned, I have simply repeated and summarized the views already expressed on the whole subject.

But it only took 61 new genes to do the job. The article just proves the difference at the genetic level. And we learned to use the better brain much later than its appearance with those genes..

Evolution: bacterial version of inventive mechanism

by David Turell @, Saturday, June 01, 2019, 23:36 (2000 days ago) @ dhw

It appears necessary mutations can be automatic under stress:

https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1007995&...

Abstract:

"Mutations drive evolution and were assumed to occur by chance: constantly, gradually, roughly uniformly in genomes, and without regard to environmental inputs, but this view is being revised by discoveries of molecular mechanisms of mutation in bacteria, now translated across the tree of life. These mechanisms reveal a picture of highly regulated mutagenesis, up-regulated temporally by stress responses and activated when cells/organisms are maladapted to their environments—when stressed—potentially accelerating adaptation. Mutation is also nonrandom in genomic space, with multiple simultaneous mutations falling in local clusters, which may allow concerted evolution—the multiple changes needed to adapt protein functions and protein machines encoded by linked genes. Molecular mechanisms of stress-inducible mutation change ideas about evolution and suggest different ways to model and address cancer development, infectious disease, and evolution generally.

***

"Here, we review some of the wealth of evidence, much of which originated in microbes, that reframes mutagenesis as dynamic and highly regulated processes. (my bold) Mutation is regulated temporally by stress responses, occurring when organisms are poorly adapted to their environments, and occurs nonrandomly in genomes. Both biases may accelerate adaptation.

***

"John Cairns’ later proposal of “directed” or “adaptive” mutagenesis in starvation-stressed Escherichiacoli[10, 11] reframed the supposed randomness of mutation as an exciting problem not yet solved. The mutagenesis they studied under the nonlethal environment of starvation is now known to reflect stress-induced mutagenesis—mutation up-regulated by stress responses. Its molecular mechanism(s), reviewed here, demonstrate regulation of mutagenesis. Similar mechanisms are now described from bacteria to humans, suggesting that regulated mutagenesis may be the rule, not the exception

***

"During a general stress response, theσS transcriptional activator increases the transcription of hundreds of genes (approximately 10% of all E.coligenes) that provide a range of protective functions. We do not know exactly how the general stress response promotes mutagenesis.

***

"In addition to starvation-induced MBR inE.coli, diverse bacteria and single-celled eukaryotes display examples of stress response–up-regulated mutagenesis. Some of these mutation mechanisms provide additional insight into how mutation rates vary across genomes in ways that may accelerate adaptive evolution. Many share characteristics withE.coliMBR but differ enough to suggest that regulated mutagenesis has evolved independently multiple times, thus highlighting the importance of regulated mutagenesis to evolution-driven problems, such as combatting infectious disease and antimicrobial resistance.

***

"Stress response–up-regulated mutation mechanisms have been discovered in plants, flies, and human cells (reviewed, [12]). The potential adaptive roles of these mutation mechanisms are less clear in multicellular organisms than in microbes. Do these mechanisms contribute to germline variation (and thus organismal evolution), mosaicism and somatic cell evolution, or both? Or are they simply biproducts of other required cellular functions or stress-induced dysfunctions?

***

"Mutations provide the raw material for evolution but can also decrease the fitness of an organism. ... Constitutively high mutation rates are advantageous in rapidly changing environments but decrease fitness in more stable (or periodically changing) environments. By biasing mutation to times of stress and to particular genomic regions, perhaps such regions relevant to a specific stress, stress-induced mutagenesis mechanisms provide the benefits of high mutation rate, while mitigating the risks. The ubiquity of these mechanisms throughout the tree of life supports their crucial role in evolution.

"Stress-induced mutation mechanisms, first discovered in bacteria, challenge historical assumptions about the constancy and uniformity of mutation. Mutation is still viewed as probabilistic, not deterministic, but we argue that regulated mutagenesis mechanisms greatly increase the probability that the useful mutations will occur at the right time, thus increasing an organism’s ability to evolve and, possibly, in the right places. Assumptions about the constant, gradual, clock-like, and environmentally blind nature of mutation are ready for retirement. " (my bold)

Comment: IM described as a highly controlled, regulated mechanism. My bold above is their view of stepwise original Darwin theory: gone.

Evolution: side effects of defense mechanisms:

by David Turell @, Saturday, July 27, 2019, 18:54 (1944 days ago) @ David Turell

Many of our infections come from self-defense mechanisms of various agents:

https://aeon.co/essays/when-bacteria-kill-us-it-s-more-accident-than-assassination?utm_...

"Many of the bacteria and fungi that afflict us with severe diseases are not aiming at us at all. Instead, they have evolved to thrive in harsh environments or to fend off other microbes. It just so happens that these same adaptations allow them to thrive in our bodies or to fend off our immune systems.

***

"the thickly armoured strains of S.pneumoniae are impervious to white blood cells, and can stand their ground. Their armour would normally be a liability – they take so much energy to make that their owners get outcompeted by strains that make lighter and less costly coats. But with H.influenzae mobilising an immune army, a thick coat suddenly becomes worthwhile. And by coincidence, those coats make these strains better at invading deeper parts of the respiratory system, and causing serious disease. In defending itself from a competitor, S.pneumoniae inadvertently becomes an armoured killer.

"Its virulence – its ability to cause disease – is not an adaptation against its host. It is a side effect, a fluke. It kills through coincidence.

***

"The adaptations that allow bacteria, fungi and other pathogens to cause us harm can easily evolve outside the context of human disease. They are part of a microbial narrative that affects us, and can even kill us, but that isn’t about us. This concept is known as the coincidental evolution hypothesis or, as the Emory University microbiologist Bruce Levin described it in 2008, the ‘shit happens’ hypothesis.

***


"The coincidental evolution hypothesis explains a number of other recent discoveries about microbes. Scientists have found antibiotic resistance genes in bacteria that have been frozen for 30,000 years, or isolated in million-year-old caves. We might think of antibiotics as modern inventions, but they’re actually weapons that bacteria have been using against each other for aeons, or at least well before Alexander Fleming noticed a funky mould in a Petri dish in 1928. Antibiotic resistance genes evolved as part of this ancient war, but they also help today’s microbes to deal with the medicines that we mass-produce.

"Likewise, many of the ‘virulence genes’ that help pathogens to cause disease have counterparts in marine microbes with no track record of infecting humans. And some supposedly pathogenic bacteria were often common parts of the environment. ‘These organisms become accidental pathogens,’ says the microbiologist Arturo Casadevall.

***

"There are so many microbes out there that some of them will end up with a hand that lets them muscle their way into our game. ‘If you take all the microbial species in the world and imagine that they have these traits randomly, you can find pathogenic microbes for practically anything,’ says Casadevall.

***

"...if virulence is coincidental to begin with, there might not be much of an evolutionary pressure for the inadvertent pathogen to change its ways.

"There is something unsatisfying, almost nihilistic, about this idea. It deprives us of answers. As Casadevall wrote in a review, it says that virulence can arise by chance, ‘in a process that has no explanation, except for that it happened’. According to this outlook, we’re not central actors in the dramas that affect our lives. We’re not even bit players. We are just passers-by, walking outside the theatre and getting hit by flying props.

"The most important parts of a microbe’s world are, after all, other microbes. They’ve been dealing with each other for billions of years before we came along. When we step into the crossfire of this ancient war, we risk becoming collateral damage."

Comment: Part of evolutionary relationships may simply be unintended consequences, which brings us back to God as an impersonal being, not actually caring about humans welfare. Adler thought God answering prayers was a 50/50 proposition.

Evolution: food as well as oxygen allows speedy change

by David Turell @, Thursday, December 23, 2021, 22:01 (1064 days ago) @ David Turell

A huge reptile ocean form developed rapidly:

https://www.newscientist.com/article/2302957-prehistoric-ichthyosaurs-evolved-rapidly-t...

"Ichthyosaurs were marine reptiles that lived between about 249 million and 90 million years ago and had a body shape reminiscent of modern whales and dolphins. Some grew large, and C. youngorum was comparable in size to a modern sperm whale.


"It was discovered in roughly 246 million-year-old rocks, so it is only about 3 million years younger than the first ichthyosaurs, which evolved from land-based ancestors. This indicates that ichthyosaurs ballooned in size astonishingly quickly once they took to the seas.

***

"The ecosystem that hosted C. youngorum wasn’t like the seas today. “The food chains were shorter,” says Schmitz, with a proliferation of creatures, including ancient squid relatives called ammonoids, that would have provided ample sustenance for marine reptiles.

"The glut of seafood allowed large ichthyosaurs to evolve and sustain themselves. Based on models of energy flow through the ancient food web, Schmitz notes that another giant-size ichthyosaur species could have survived in the same environment. Whales didn’t get the benefit of such a surfeit, and so took a much longer path to becoming leviathans."

Comment: the food supply controls the speed of evolution to some degree, just as it is assumed oxygen does, but neither substance, causes the speed. but allows it. This is why dhw's complaint about 'humans and their food' is so silly.

Evolution: life below ground

by David Turell @, Monday, December 10, 2018, 19:11 (2173 days ago) @ David Turell

New borings to five kilometers find enormous amounts of life:

https://phys.org/news/2018-12-life-deep-earth-totals-billion.html

"Barely living "zombie" bacteria and other forms of life constitute an immense amount of carbon deep within Earth's subsurface—245 to 385 times greater than the carbon mass of all humans on the surface, according to scientists nearing the end of a 10-year international collaboration to reveal Earth's innermost secrets.

***

"With insights from now hundreds of sites under the continents and seas, they have approximated the size of the deep biosphere—2 to 2.3 billion cubic km (almost twice the volume of all oceans) - as well as the carbon mass of deep life: 15 to 23 billion tonnes (an average of at least 7.5 tonnes of carbon per cu km subsurface).

***

"Among many key discoveries and insights:
The deep biosphere constitutes a world that can be viewed as a sort of "subterranean Galapagos" and includes members of all three domains of life: bacteria and archaea (microbes with no membrane-bound nucleus), and eukarya (microbes or multicellular organisms with cells that contain a nucleus as well as membrane-bound organelles)

"Two types of microbes—bacteria and archaea—dominate Deep Earth. Among them are millions of distinct types, most yet to be discovered or characterized. This so-called microbial "dark matter" dramatically expands our perspective on the tree of life. Deep Life scientists say about 70% of Earth's bacteria and archaea live in the subsurface

"Deep microbes are often very different from their surface cousins, with life cycles on near-geologic timescales, dining in some cases on nothing more than energy from rocks
The genetic diversity of life below the surface is comparable to or exceeds that above the surface

"While subsurface microbial communities differ greatly between environments, certain genera and higher taxonomic groups are ubiquitous—they appear planet-wide

"Microbial community richness relates to the age of marine sediments where cells are found—suggesting that in older sediments, food energy has declined over time, reducing the microbial community

"The absolute limits of life on Earth in terms of temperature, pressure, and energy availability have yet to be found. The records continually get broken.

***

"Led by Cara Magnabosco of the Flatiron Institute Center for Computational Biology, New York, and an international team of researchers, subsurface scientists factored in a suite of considerations, including global heat flow, surface temperature, depth and lithology—the physical characteristics of rocks in each location—to estimate that the continental subsurface hosts 2 to 6 × 10^29 cells.

"Combined with estimates of subsurface life under the oceans, total global Deep Earth biomass is approximately 15 to 23 petagrams (15 to 23 billion tonnes) of carbon.

***

"Molecular studies raise the likelihood that microbial dark matter is much more diverse than what we currently know it to be, and the deepest branching lineages challenge the three-domain concept introduced by Carl Woese in 1977. Perhaps we are approaching a nexus where the earliest possible branching patterns might be accessible through deep life investigation.

"Ten years ago, we knew far less about the physiologies of the bacteria and microbes that dominate the subsurface biosphere," says Karen Lloyd, University of Tennessee at Knoxville, USA. "Today, we know that, in many places, they invest most of their energy to simply maintaining their existence and little into growth, which is a fascinating way to live.

"Today too, we know that subsurface life is common. Ten years ago, we had sampled only a few sites—the kinds of places we'd expect to find life. Now, thanks to ultra-deep sampling, we know we can find them pretty much everywhere, albeit the sampling has obviously reached only an infinitesimally tiny part of the deep biosphere."

Comment: First it is obvious the Earth allows life everywhere and it is amazingly life-friendly. The next question is how did those organisms get down there? Did they first evolve on the surface and then slowly go deeper? If they suddenly went that deep they could not have evolved to the forms they are now, which are markedly different from surface bacteria. Were they designed to be there? That could be God at work running the evolutionary process.

Evolution: species pre-planning identified

by David Turell @, Thursday, January 31, 2019, 01:22 (2122 days ago) @ David Turell

In a stickleback fish study:

https://www.sciencedaily.com/releases/2019/01/190130112722.htm

"Genetic analysis of sticklebacks shows that isolated populations in similar environments develop in comparable ways. The basis for this is already present in the genome of their genetic ancestors.

***

"On the Scottish island of North Uist, sticklebacks can be found in bodies of water with extremely varied pH values. While the lakes to the west contain alkaline water, the high moorland lakes in the east are acidic and low in nutrients.

"Studies of five populations from both the western and eastern lakes showed that the fish adapted to their alkaline or acidic habitat independently of each other, but in comparable ways. All five populations in the acidic lakes, for example, displayed a greatly reduced skeleton and stunted growth -- probably as an adaptation to the lack of nutrients.

"In addition to the shared external characteristics, the researchers were also able to establish that changes in the genetic pool proceeded in very similar ways: the populations within the same type of habitat showed the same genetic variants in dozens of regions of the genome. This makes it possible to predict where in the genome changes will take place under the influence of a particular habitat -- evolution becomes predictable to some extent.

"Genetic analysis of the marine ancestor also showed that the genetic variants that are beneficial for adapting to acidic or alkaline water are all present in the ancestor. Similar life forms, therefore, didn't occur randomly, but independently of each other through the predictable sorting of advantageous genetic variants that were already present in the genome. "

Comment: It certainly looks as if the existing genome can guide future adaptations, but in case within related species. Note the bold statement

Evolution: species pre-planning identified

by David Turell @, Friday, February 01, 2019, 14:57 (2120 days ago) @ David Turell

In a stickleback fish study:

https://www.sciencedaily.com/releases/2019/01/190130112722.htm

"Genetic analysis of sticklebacks shows that isolated populations in similar environments develop in comparable ways. The basis for this is already present in the genome of their genetic ancestors.

***

"On the Scottish island of North Uist, sticklebacks can be found in bodies of water with extremely varied pH values. While the lakes to the west contain alkaline water, the high moorland lakes in the east are acidic and low in nutrients.

"Studies of five populations from both the western and eastern lakes showed that the fish adapted to their alkaline or acidic habitat independently of each other, but in comparable ways. All five populations in the acidic lakes, for example, displayed a greatly reduced skeleton and stunted growth -- probably as an adaptation to the lack of nutrients.

"In addition to the shared external characteristics, the researchers were also able to establish that changes in the genetic pool proceeded in very similar ways: the populations within the same type of habitat showed the same genetic variants in dozens of regions of the genome. This makes it possible to predict where in the genome changes will take place under the influence of a particular habitat -- evolution becomes predictable to some extent.

"Genetic analysis of the marine ancestor also showed that the genetic variants that are beneficial for adapting to acidic or alkaline water are all present in the ancestor. Similar life forms, therefore, didn't occur randomly, but independently of each other through the predictable sorting of advantageous genetic variants that were already present in the genome. "

Comment: It certainly looks as if the existing genome can guide future adaptations, but in case within related species. Note the bold statement

I'm surprised there is no comment on this obvious evidence of pre-planning

Evolution: origin of eukaryotes

by David Turell @, Wednesday, April 17, 2019, 19:55 (2045 days ago) @ David Turell

Alternatives to mitochondrial origin theory:

https://www.quantamagazine.org/rethinking-the-ancestry-of-the-eukaryotes-20190409/

"A particularly vexing mystery is the rise of the eukaryotes, cells with well-defined internal compartments, or organelles, which are present only in animals, plants, fungi and some microbes like protists — our evolutionary kin. The earliest eukaryotes left no clear fossils as clues, so researchers are forced to deduce what they were like by comparing the structural and molecular details of later ones and inferring their evolutionary relationships.

***

"And those first eukaryotes may depart significantly from what most scientists expected, if some recent findings are any indication. Earlier this month, one team presented evidence that a signature event in eukaryote evolution — the development of the organelles called mitochondria — might have unfolded quite differently than was theorized. Meanwhile, other researchers have suggested that the earliest “ancestor” of all eukaryotes might not have been a single cell at all, but rather a mixed population of cells that avidly swapped DNA. The difference is subtle, but it might be important for understanding the evolution and diversity of the eukaryotes we see today.

"The very first cells — the first life forms on this planet — were prokaryotes, but they were not all alike. Even early on, two very distinct lineages emerged, the archaea and the bacteria. The archaea might have been the first to thrive because even now they can survive in extreme environments like hot vents and super-saline pools. But it’s also possible that archaea and bacteria split from the first cells at the same time and began to diversify independently from the start. Figuring out definitively when and how the split occurred is probably impossible given how much time has passed; fossil evidence is nonexistent, and organisms from both branches have swapped genes extensively through horizontal gene transfer (as opposed to the “vertical” transfer of genes down through generations), which complicates analyses of their genomic history.

***

"It would be a struggle to distinguish the cells of this first eukaryotic common ancestor, or FECA, as such. It didn’t yet have a nucleus, for example. It didn’t have mitochondria to convert sugars and other molecules into more metabolically usable forms of energy. It didn’t even have microtubules, the structural proteins in eukaryotic cells that allow for compartmentalization by enabling the cell to shuttle things where they need to go.

***

"The scientists concluded that mitochondria most likely arose out of a partnership between archaeal cells that fermented certain small organic molecules and alphaproteobacteria that survived by oxidizing certain other ones: The bacteria could use the electrons and hydrogen that the archaeal cells shed as wastes. (The researchers call this the “reverse flow model” because according to a previously popular theory, the bacteria would have donated hydrogen to the archaea’s metabolism.)

***

"For example, some modern archaea that live under oxygen-free conditions and metabolize hydrocarbons depend on bacteria to accept their electrons. “A similar type of interaction may have characterized the presumed archaeal ancestor of eukaryotes.”

"Over time, horizontal transfers of genes from other bacteria would have provided more of the machinery for the metabolic processes performed by mitochondria as we know them. Meanwhile, gene transfers between archaeal hosts and their bacterial symbiotes, along with the loss of some superfluous genes on each side, would have cemented what had been separate symbiotic cells into a permanently unified eukaryotic state.

***

"Overall, the genesis of eukaryotes remains mysterious because all eukaryotes alive today arose from an organism that was already complex. Somehow, over an unknown number of millennia, FECA turned into the last eukaryotic common ancestor, or LECA — an organism ancestral to every other subsequent eukaryote living or extinct, including ones currently unknown to science. LECA is a lot easier to imagine because it probably looked similar to some of today’s microbial eukaryotes. “It turns out that everything that has a nucleus also has mitochondria, a Golgi apparatus and everything else,” said W. Ford Doolittle, “LECA appears to have already been a fairly sophisticated eukaryotic cell.”

***

"many of O’Malley and Leger’s colleagues do agree that it makes sense to think of LECA as a population of cells. But there has been some pushback to that idea, too. According to O’Malley, some scientists insist that LECA had to be a single cell, one that split and then split again and again and again, eventually giving rise to all other eukaryotic cells.

***

"The trouble is, we may never know what LECA looked like because no fossils or remnants of DNA will ever reveal its nature directly. Even the best genomic methods can’t literally turn back time and allow us to watch how a sequence changed. It’s basically impossible to concretely determine what LECA’s genome or pangenome looked like."

Comment: The prokaryote cell and the eukaryote cell are as different as as tribe of cave dwellers are to a modern city's population. The highly organized cell functioned just as the simple cell did, but it led the way to complex evolution. Not by chance.

Evolution: origin of eukaryotes: Archaea

by David Turell @, Wednesday, May 15, 2019, 17:52 (2017 days ago) @ David Turell

Another review of the origin of eukaryotes, possibly from archaea:

https://www.nature.com/articles/d41586-019-01496-w?utm_source=Nature+Briefing&utm_c...

"a group of microbes — the Lokiarchaeota — that is rewriting a fundamental story about life’s early roots.

"These unruly microbes belong to a category of single-celled organisms called archaea, which resemble bacteria under a microscope but are as distinct from them in some respects as humans are. The Lokis, as they are sometimes known, were discovered by sequencing DNA from sea-floor muck collected near Greenland1. Together with some related microbes, they are prodding biologists to reconsider one of the greatest events in the history of life on Earth — the appearance of the eukaryotes, the group of organisms that includes all plants, animals, fungi and more.

"The discovery of archaea in the late 1970s led scientists to propose that the tree of life diverged long ago into three main trunks, or ‘domains’. One trunk gave rise to modern bacteria; one to archaea. And the third produced eukaryotes. But debates soon erupted over the structure of these trunks. A leading ‘three-domain’ model held that archaea and eukaryotes diverged from a common ancestor. But a two-domain scenario suggested that eukaryotes diverged directly from a subgroup of archaea.

***

"These newly discovered archaea have genes that are considered hallmarks of eukaryotes. And deep analysis of the organisms’ DNA suggests that modern eukaryotes belong to the same archaeal group. If that’s the case, essentially all complex life — everything from green algae to blue whales — originally came from archaea.

"But many scientists remain unconvinced. Evolutionary tree building is messy, contentious work. And no one has yet published evidence to show that these organisms can be grown in the lab, which makes them difficult to study. The debate is still rancorous. Stalwarts on both sides are “very hostile to each other, and 100% believe there’s nothing correct in the other camp”, Hugenholtz says. Some decline to voice an opinion, for fear of offending senior colleagues.

***

"Today, the argument over where eukaryotes came from has matured. Many on both sides agree that the origin of eukaryotes probably involved a step known as endosymbiosis. This theory, championed by the late biologist Lynn Margulis, holds that a simple host cell living eons ago somehow swallowed a bacterium, and the two struck up a mutually beneficial relationship. These captive bacteria eventually evolved into mitochondria — the cellular substructures that produce energy — and the hybrid cells became what are now known as eukaryotes.

"The nature of the engulfing cell is where the two camps diverge. As the three-domain adherents tell it, the engulfer was an ancestral microbe, now extinct. According to Forterre, it was a “proto-eukaryote” — “neither a modern archaeon nor a modern eukaryote”. In this model, there were several major splits in early evolution. The first happened billions of years ago, when primeval organisms gave rise to both bacteria and an extinct group of microbes. This latter group diverged into archaea and the group that became eukaryotes.

***

"Like their namesake, Lokiarchaeota and their kin evade easy description. They are unquestionably archaea, but their genomes include a smorgasbord of genes that are similar to some found in eukaryotes. Loki DNA, for example, contains genetic instructions for actins, proteins that form a skeleton-like framework in eukaryotic cells. The genes seemed so out of place that the researcher who spotted them initially worried that contamination was to blame.

***

"researchers are turning to other lines of evidence that might support a two-domain tree. Bacteria and eukaryotes have one set of lipids in their cell membranes, whereas archaeal membranes contain a different set. A mixture of the two was thought to be unstable. This ‘lipid divide’ has been a sore spot for the two-domain proponents, because it implies that if eukaryotes came from archaea, they would have had to switch from using archaeal lipids to producing bacterial versions.

***

"The overall picture is still unclear. In Norse legends, Loki often sows mayhem — and then sets everything right again. As the Lokiarchaeota and their relatives emerge from the shadows, two-domain supporters would like them to settle the long-standing debate over the origin of complex life. But that could take a while. “When we discovered the Asgard archaea, we thought that would convince everybody,” says Spang with a laugh. “That wasn’t the case.'”

Comment: Where did eukaryotes come from? A giant step, still unknown.

Evolution: origin of eukaryotes: Archaea

by dhw, Thursday, May 16, 2019, 08:24 (2017 days ago) @ David Turell

QUOTE: "Today, the argument over where eukaryotes came from has matured. Many on both sides agree that the origin of eukaryotes probably involved a step known as endosymbiosis. This theory, championed by the late biologist Lynn Margulis, holds that a simple host cell living eons ago somehow swallowed a bacterium, and the two struck up a mutually beneficial relationship. These captive bacteria eventually evolved into mitochondria — the cellular substructures that produce energy — and the hybrid cells became what are now known as eukaryotes."

Just in passing, it is worth noting that Lynn Margulis regarded cooperation as a major factor in evolution, and championed the cause of cellular intelligence.

Evolution: origin of eukaryotes: Archaea

by David Turell @, Thursday, May 16, 2019, 15:27 (2016 days ago) @ dhw

QUOTE: "Today, the argument over where eukaryotes came from has matured. Many on both sides agree that the origin of eukaryotes probably involved a step known as endosymbiosis. This theory, championed by the late biologist Lynn Margulis, holds that a simple host cell living eons ago somehow swallowed a bacterium, and the two struck up a mutually beneficial relationship. These captive bacteria eventually evolved into mitochondria — the cellular substructures that produce energy — and the hybrid cells became what are now known as eukaryotes."

dhw: Just in passing, it is worth noting that Lynn Margulis regarded cooperation as a major factor in evolution, and championed the cause of cellular intelligence.

Lynn Margulis was a brilliant scientist. She was married to Carl Sagan.

Evolution: origin of eukaryotes: ? first fungi?

by David Turell @, Thursday, May 23, 2019, 23:45 (2009 days ago) @ David Turell

Fossil fungi from one billion years ago:

https://www.smithsonianmag.com/science-nature/fossil-discovery-pushes-back-origin-fungi...

"For years scientists have tried to reconcile the fungal fossil record with estimates from analyses of fungal DNA. But some of their key morphological characters – that is, the shapes they take – can only be established via microscopic and chemical analyses. That includes the complex networks of microscopic thread-like filaments and cell walls made of chitin, which are also not visible to the naked eye. The effort seemed hopeless, until now.

"Corentin Loron, a graduate student at the University of Liege in Belgium and colleagues, discovered microscopic, fossilized specimens of a fungus called Ourasphaira giraldae in shale rock from the Grassy Bay Formation in the Northwest Territories of Canada. Given that Ourasphaira is found on 1,000- to 900-million-year-old rocks, the new fossil pushes back the origin of fungi by half a billion years.

"But how did Loron deduce that these fossils are fungi? While most of us are quite familiar with the large reproductive structures of some fungi, such as mushrooms, most of us are less familiar with the fungal network of microscopic thread-like filaments that makes up their “bodies.”

"Microscopical analyses of Ourasphaira show that it formed a network just like those made by modern fungi; and chemical analyses show that the cell walls of these microfossils contain chitin, again just like modern fungi.

"The implications of this discovery are twofold.

"First, the fossil singlehandedly reconciles DNA-based and paleontological estimates of fungal origins, pushing back the origin of Opisthokonta, a supergroup comprising fungi, animals and their single-celled relatives to at least a billion years ago. And second, the fossil gives us clues about the environments where the first fungi lived. Ourasphaira was found in a shale, a type of rock that forms at the muddy bottom of lakes and rivers. Since this particular shale appears to have been formed as a result of sedimentation from a shallow-water estuary, it may be the first fungi evolved where rivers met the seas a billion years ago.

"It’s one more clue that helps fill in the picture on how life on earth evolved and one more step toward bringing this fascinating group of organisms to the limelight."

comment: Filling in the gaps, but not the Cambrian gap.

Evolution: origin of eukaryotes: ? first fungi?

by dhw, Friday, May 24, 2019, 10:12 (2009 days ago) @ David Turell

QUOTE: "It’s one more clue that helps fill in the picture on how life on earth evolved and one more step toward bringing this fascinating group of organisms to the limelight."

DAVID: Filling in the gaps, but not the Cambrian gap.

Research is ongoing, and more and more gaps are being filled. So far, so good. Who knows what will emerge during the next thousand years?

Evolution: origin of eukaryotes: ? first fungi?

by David Turell @, Friday, May 24, 2019, 16:07 (2008 days ago) @ dhw

QUOTE: "It’s one more clue that helps fill in the picture on how life on earth evolved and one more step toward bringing this fascinating group of organisms to the limelight."

DAVID: Filling in the gaps, but not the Cambrian gap.

dhw: Research is ongoing, and more and more gaps are being filled. So far, so good. Who knows what will emerge during the next thousand years?

Scientists recognizing God because of their findings?

Evolution of Earth: first fungi?

by David Turell @, Friday, May 31, 2019, 15:00 (2001 days ago) @ David Turell

Newly found fungi fossils support a theory that early fungi helped start plants on land:

https://theconversation.com/complex-life-may-only-exist-because-of-millions-of-years-of...

"Extracted from Arctic Canadian shales, the newly discovered billion-year-old fossilised fungal spores and hyphae (long thin tubes) plug the gap in the fossil record and suggest that fungi may have occupied land well before plants.

***

"As you might imagine from their ancient origins, fungi have played a critical role in shaping Earth’s terrestrial biosphere over the last billion years. The first plants to emerge onto land 500m years ago formed intimate partnerships with fungi. Lacking roots, these early plants relied on their fungal partners to grow inside them and spread outwards into the primordial mineral soil. In a process known as biological weathering, fungal hyphae would secrete organic acids to dissolve rocks and extract nutrients held within. In return, the plants would transfer nutrients produced through photosynthesis to the fungi.

"This exchange of resources between early plants and fungi powered the growth, evolution and diversification of Earth’s flora into ever more complex species, communities and ecosystems, and remains the norm today. Over 90% of land plants associate with a fungal partner of one type or another, and some are entirely dependent on fungal assistance to survive.

"The symbiotic rise of land plants and their fungal partners also had dramatic effects on our atmosphere. Now with abundant access to mineral-based energy building blocks, plants evolved more efficient mechanisms for photosynthesis to capture this energy, for example through better control of the movement of carbon dioxide and water into and out of leaves. Over millions of years, this increased absorption of carbon dioxide produced a massive rise in oxygen concentrations, supporting the emergence of much larger, more complex animal life than the tiny insect-like life forms that previous oxygen levels could support.

"From there, the evolutionary story is clear. But in showing that fungi probably arrived on land 500m years before plants, the new fossil evidence raises fundamental questions about the start of this symbiotic journey.

***

"... the new discovery opens up the possibility that Earth’s lands may have been already being prepared for successful plant life for hundreds of millions of years. Dissolving mineral-rich rocks and secreting carbon-based organic acids, we know that fungi were extremely important in converting barren lands into the fertile, carbon-rich soils we know today. It could be that the emergence of plant life was only made possible by aeons of groundwork by ancient fungal forefathers.

***

"What is already clear is that without fungi, we would not exist. Playing a vital role in the maintenance of healthy ecosystems across the planet, from the Antarctic deserts to the tropical rainforests, fungi underpin all life on Earth today. Now, it appears we may have another 500m years to thank them for."

Comment: A clear example of how the Earth evolved to support life. God creates by evolution: the universe, the Earth and life are certain examples.

Evolution of Earth: finding new genes

by David Turell @, Tuesday, June 04, 2019, 21:03 (1997 days ago) @ David Turell

Fun and games in the lab. Using intelligent design to see how new genes might be made in DNA:

https://www.sciencedaily.com/releases/2019/06/190604131214.htm

"One key question in evolutionary biology is how novel genes arise and develop. Swedish researchers now show how new genes and functions that are advantageous to bacteria can be selected from random DNA sequences.

***

"Two different types of mechanism have been proposed: (1) new genes with novel functions arise from existing genes, and (2) new genes and proteins evolve from random DNA sequences with no similarity to existing genes and proteins.

***

"The raw material for the experiment was an big library of some 500 million randomised gene sequences, from which peptide sequences with a biological function were identified. In the experiment, random gene sequences were placed on a plasmid and overexpressed. The scientists then investigated whether they could give bacteria a specific, defined property. Were they, for example, able to give the bacteria antibiotic resistance? They identified several short peptides (22-25 amino acids long) that could give the bacteria a high degree of resistance to aminoglycosides, an important class of antibiotics used for severe infections.


***

"Through a combination of genetic and functional experiments, the scientists were able to demonstrate that the peptides cause resistance by attaching themselves to bacterial cell membranes and affecting the proton potential across the membrane. The disruption of the proton potential causes a decrease in antibiotic uptake, rendering the bacteria resistant.

"'This study is important because it shows that completely random sequences of amino acids can give rise to new, advantageous functions, and that this process of de novo evolution can be studied experimentally in the laboratory," says Dan I. Andersson, Professor of Medical Bacteriology, who is chiefly responsible for the study."

Comment: Just life origin of life designs in the lab, proving nothing about how evolution itself can find new genes for new functions.

Evolution of Earth: life's contribution

by David Turell @, Saturday, July 06, 2019, 21:29 (1965 days ago) @ David Turell

Many life forms contribute to the environment on Earth. The role of shelled forms to the oceans:

https://www.sciencedaily.com/releases/2019/07/190701143804.htm

"The ocean as we understand it today was shaped by a global evolutionary regime shift around 170 million years ago, according to new research.

"Until that point, the success of organisms living within the marine environment had been strongly controlled by non-biological factors, including ocean chemistry and climate.

"However, from the middle of the Jurassic period onwards (some 170 million years ago), biological factors such as predator-prey relationships became increasingly important.

"Writing in Nature Geoscience, scientists say this change coincided with the proliferation of calcium carbonate-secreting plankton and their subsequent deposition on the ocean floor.

"They believe the rise of this plankton stabilised the chemical composition of the ocean and provided the conditions for one of the most prominent diversifications of marine life in Earth's history.

***

"'Today, huge areas of the ocean floor are covered with the equivalent of chalk, made up of microscopic organisms that rose to dominance in the middle of the Jurassic period. The chalky mass helps to balance out the acidity of the ocean and, with that balance in place, organisms are less at the mercy of short-term perturbations of ocean chemistry than they might have been previously. It is easier to secrete a shell, regardless of its mineralogy, if the ocean chemistry is stable."

***

"Since its emergence more than 540 million years ago, multicellular life evolved under the influence of both the non-biological and the biological environment, but how the balance between these factors changed remained largely unknown.

"Calcified seashells provide an ideal test to answer this question, as aragonite and calcite -- the minerals making up seashells -- also form non-biologically in the ocean.

***

"The results show that up until the middle of the Jurassic period, around 170 million years ago, the ecological success of shell-secreting marine organisms was tightly coupled to their shell composition: organisms that secreted the mineral that was environmentally favoured had an evolutionary advantage.

"However, the Earth-Life system was revolutionised forever by the rise of calcifying plankton, which expanded the production of calcium carbonate from continental shelves to the open ocean.

"This ensured that the evolutionary impact of episodes of severe climate changes, and resulting ocean acidification, was less severe than comparable events earlier in Earth history.

***

"'During the Earth's history there have been several major events that shaped the evolution of life on our planet, such as the five big mass extinctions or the radiation of complex animals during the 'Cambrian Explosion'. Our research identifies a previously overlooked event of this magnitude around 170 million years ago when the emergence of calcium carbonate-secreting plankton lifted constraints on the evolution of other marine organisms that we did not know existed. As a result, life in the ocean has diversified to levels far beyond what existed before.'"

Comment: The evolution of the Earth was influenced by the life that developed upon it. It is a two way street: a special planet is built for life, and with life Earth was changed to safer more balanced environment.Only design does this, realizing how special the Earth is by design.

Evolution of Earth: life's contribution

by Balance_Maintained @, U.S.A., Sunday, July 07, 2019, 14:43 (1964 days ago) @ David Turell

Many life forms contribute to the environment on Earth. The role of shelled forms to the oceans:

...

"'During the Earth's history there have been several major events that shaped the evolution of life on our planet, such as the five big mass extinctions or the radiation of complex animals during the 'Cambrian Explosion'. Our research identifies a previously overlooked event of this magnitude around 170 million years ago when the emergence of calcium carbonate-secreting plankton lifted constraints on the evolution of other marine organisms that we did not know existed. As a result, life in the ocean has diversified to levels far beyond what existed before.'"

Comment: The evolution of the Earth was influenced by the life that developed upon it. It is a two way street: a special planet is built for life, and with life Earth was changed to safer more balanced environment.Only design does this, realizing how special the Earth is by design.

This sounds very much like confirmation of my old speculation that God used the stages of evolution to prepare the earth.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution of Earth: life's contribution

by David Turell @, Sunday, July 07, 2019, 15:16 (1964 days ago) @ Balance_Maintained

Many life forms contribute to the environment on Earth. The role of shelled forms to the oceans:

...

"'During the Earth's history there have been several major events that shaped the evolution of life on our planet, such as the five big mass extinctions or the radiation of complex animals during the 'Cambrian Explosion'. Our research identifies a previously overlooked event of this magnitude around 170 million years ago when the emergence of calcium carbonate-secreting plankton lifted constraints on the evolution of other marine organisms that we did not know existed. As a result, life in the ocean has diversified to levels far beyond what existed before.'"

David Comment: The evolution of the Earth was influenced by the life that developed upon it. It is a two way street: a special planet is built for life, and with life Earth was changed to safer more balanced environment.Only design does this, realizing how special the Earth is by design.


Tony: This sounds very much like confirmation of my old speculation that God used the stages of evolution to prepare the earth.

Sure fits

Evolution of Earth: ocean currents

by David Turell @, Wednesday, November 30, 2022, 16:47 (722 days ago) @ David Turell

Stated when oceans appeared:

https://www.livescience.com/where-did-ocean-currents-come-from?utm_term=C3CFD69C-A485-4...

"Flows of water in Earth's seas have guided navigators for centuries and shaped climates for much longer. But how did ocean currents first emerge?

"These flows would have appeared with the planet's first oceans, around 4 billion to 4.5 billion years ago, spurred by the same forces that propel them today: winds, tides, global differences in temperature and saltiness, and the planet's rotation.

"Ocean currents behave much like rivers within the larger bodies of water, according to the University of Hawaiʻi at Mānoa(opens in new tab). They range in size from small currents near beaches to ocean-spanning flows, like the enormous gyres, or elliptical cycles, that snake between continents. For example, in the North Atlantic Gyre, water flows west along the equator, north past the U.S. East Coast in the Gulf Stream, back east along the Arctic, then south past Europe and Africa as the Canary Current.

"Winds, powered by solar energy, direct surface currents, like those in gyres. Differences in temperature and saltiness between the equator and Earth's poles power deep-water currents known as thermohaline (for "heat" plus "salt") circulation. It can take a thousand years to complete a global thermohaline cycle, James Potemra(opens in new tab), a professor at the University of Hawaiʻi at Mānoa Institute of Geophysics and Planetology, told Live Science. Tides create smaller currents, while Earth's spin pushes gyres clockwise in the Northern Hemisphere and counterclockwise in the Southern Hemisphere (the so-called Coriolis effect).

***

"Conservative estimates put the ocean's age at 3.8 billion years, Fu said. However, ancient zircon crystals in Australia bear evidence of ocean water 4.4 billion years ago, or about 100 million years after Earth formed. "So very early in Earth's history, we would have had oceans," Fu said.

"Primeval current patterns would have been very different, however. The continents have shifted position drastically, likely all joined together in supercontinents at various times, with other configurations in between. That would have changed the paths surface currents took, with no pocket between the Old and New worlds to forge the North Atlantic Gyre, for example.

"Because of the time it takes for continents to appreciably change configuration, though, currents seem eternal on human timescales. Today's major currents "probably came into existence … millions of years ago because of some continent rearrangement," Fu said.

"Historical records, in fact, show the long persistence of today's currents. "It was Benjamin Franklin that first discovered the Gulf Stream, because he noticed when the ships came over that this current … would take them north very quickly," Potemra said. "And the Vikings would have experienced the Gulf Stream.'"

Comment: these currents would have affected life in the oceans. Similar to climate these ocean currents ran on their own, not under God's intimate controls.

Evolution: driven by environment

by David Turell @, Sunday, June 09, 2019, 19:07 (1992 days ago) @ David Turell

Some lizards after Marie hold on stronger:

https://www.nationalgeographic.com/animals/2018/07/hurricane-lizards-evolution-survival/

"The researchers first determined that lizards would outlast storms by grasping onto trees. Storm surge, they said, would make hiding in tree roots too dangerous.

***

“'Using a leaf blower to simulate hurricane-force winds was very creative, clever, and resourceful,” says Amber Wright, an ecology professor at the University of Hawaii at Mānoa. Wright was not involved in the research.

“'What makes the study interesting to me is that it links traits to survival through a specific mechanism: Ability to cling to a perch and to be a small target,” Wright continues. This helps biologists predict what will give lizards a leg up in surviving a storm—and ultimately what traits are most likely to be passed on through natural selection.

"Donihue and his colleagues thought larger toepads and longer limbs would help the lizards grasp the dowel. They were partially right—the surviving lizards had larger toepads and longer forelimbs, but their hind legs were shorter than their front legs.

***

"After analyzing video from the experiment, the researchers noticed that the lizards lost grip of the dowel with their back legs before their longer front legs gave way.

So shouldn’t lizards with longer legs in both front and back be able to hang on even tighter? Donihue says that’s not clear, but there could be tradeoffs to growing larger overall.

***

“Donihue’s study is one of the first to provide evidence that extreme weather events could impose rapid selection on species,” Langkilde continues. “It provides incentive for others to test for these effects on other species.”

“'Larger lizards are stronger, but they also run the risk of catching more wind,” he says."

Comment: The storm obviously picked the best equipped to survive.

Evolution: driven by environment

by dhw, Monday, June 10, 2019, 10:45 (1991 days ago) @ David Turell

DAVID's comment: The storm obviously picked the best equipped to survive.

Yes indeed. The experiment simply confirms that natural selection doesn’t create anything, but decides what survives and what doesn’t survive. Nothing new in that!

Evolution: driven by environment

by David Turell @, Monday, June 10, 2019, 15:20 (1991 days ago) @ dhw

DAVID's comment: The storm obviously picked the best equipped to survive.

dhw: Yes indeed. The experiment simply confirms that natural selection doesn’t create anything, but decides what survives and what doesn’t survive. Nothing new in that!

A neat demonstration of how a species is forced to adapt by the environment to favor certain species types, but never creates a new species.

Evolution: how plants on land got leaves

by David Turell @, Tuesday, August 06, 2019, 19:28 (1934 days ago) @ David Turell

Pre-existing genes did the job:

https://phys.org/news/2019-08-genes-enabled-scientists.html

"The genes that first enabled plants to grow shoots and conquer the land have been identified by University of Bristol researchers. The findings, published in Current Biology, explain how a 450-million years ago a switch enabled plants to delay reproduction and grow shoots, leaves and buds.

"Over the course of half a billion years of evolution, plants have evolved from tiny and simple ground-hugging forms into diverse and complex varieties that abound the Earth today, from the garden rose to the 100-metre tall redwood tree. An international research team from the Universities of Bristol (UK), Lyon (France) and Palacký (Czech Republic) has now discovered the secrets of shoot evolution.

"The team discovered that around 450-million years ago a switch enabled plants to delay reproduction and displace new cells downwards from the shoot tips, paving the way to plant diversification. Using cutting-edge developmental and genetic techniques, the team studied the swollen reproductive structures at the tips of the small stems of mosses. These plants, which represent a starting point for plant evolution, are raised upwards by new cells generated in the middle of the stem. Despite their different patterns of growth, similar genes are responsible for elongating the stems of mosses and plants with more elaborate shoots.

"Contrary to prior work, the results demonstrate a nascent mechanism for shoot development as plants first emerged on land and suggest that a change in the timing and location of gene activity triggered the radiation of shooting forms.

"Dr. Jill Harrison, the study's lead author and Senior Lecturer from Bristol's School of Biological Sciences, explains: "By comparing our new findings from a moss with previous findings, we can see that a pre-existing genetic network was remodelled to allow shoot systems to arise in plant evolution."

"This discovery furthers our basic understanding of how genes regulate plant shape, which could inform efforts to engineer shape and improve the yield of future crops."

Comment: Looks like pre-planning to me. Not by chance. The changes are too complex for that.

Evolution: origin of eukaryotes: Archaea hard to grow

by David Turell @, Monday, August 12, 2019, 15:07 (1928 days ago) @ David Turell

An organism that took 12 years in the lab to grow offers new insight on eukaryote/Archaea possible relationship:

https://www.sciencemag.org/news/2019/08/tentacled-microbe-could-be-missing-link-between...

"Patience proved the key ingredient to what researchers are saying may be an important discovery about how complex life evolved. After 12 years of trying, a team in Japan has grown an organism from mud on the seabed that they say could explain how simple microbes evolved into more sophisticated eukaryotes. Eukaryotes are the group that includes humans, other animals, plants, and many single-celled organisms. The microbe can produce branched appendages, which may have helped it corral and envelop bacteria that helped it—and, eventually, all eukaryotes—thrive in a world full of oxygen.

***

"The prevailing thinking is that roughly 2 billion years ago, a microbe belonging to a group called the Asgard archaea absorbed a bacterium called an alphaproteobacterium, which settled inside and became mitochondria, producing power for its host by consuming oxygen as fuel. But isolating and growing Asgard archaea has proved a challenge, as they tend to live in inhospitable environments such as deep-sea mud. They also grow very slowly, so they are hard to detect. Most evidence of their existence so far has been fragments of DNA with distinctive sequences.

***

"DNA analyses of samples from the tube indicated it included an Asgard archaeon, the microbe they were hoping to grow. It took about 20 days for the numbers of this microbe to double—bacteria commonly double in less than an hour—but eventually, they got enough of the organism to study it. “It was really a gargantuan task,” says David Baum, an evolutionary biologist at the University of Wisconsin in Madison, who was not involved with the work.

***

"Experiments with this single-cell organism suggest it usually—if not always—grows in association with another microbe that makes methane, Imachi, Takai, and colleagues report today in a preprint on bioRxiv. The researchers further discovered that Prometheoarchaeum breaks down amino acids for food and releases hydrogen, which feeds its partner. That methanemaker in turn helps Prometheoarchaeum thrive by chewing through the hydrogen, the researchers say; a buildup of hydrogen could otherwise cause even slower growth of Prometheoarchaeum. The complex partnership is another reason why the Asgard arcahaea are so hard to grow in the lab.

***

"Having grown the microbe, the researchers used an electron microscope to image it, revealing multiple branched appendages. The team hypothesizes that, eons ago, an archaeon encircled the protomitochondrion and put it to work. The researchers propose that as the concentration of oxygen increased on early Earth, archaea like Prometheoarchaeum took in oxygen-using partners and did better than other microbes.

***

"Ettema cautions that the archaeal ancestor to eukaryotic cells that lived 2 billion years ago may not have looked and acted just like Prometheoarchaeum. Moreover, DNA studies indicate that other archaea are more closely related to eukaryotes than this one. He expects, however, that the 12 years the Japanese team devoted to culturing this microbe will help him and others isolate and grow related archaea in the lab: “I’m sure it will not take 12 years to get the next Asgard into culture.'”

Comment: Still not well understood, but an amazing advance in studying descendants of early life

Evolution: more deep Earth life found

by David Turell @, Monday, August 26, 2019, 17:58 (1914 days ago) @ David Turell

Over three kilometers deep in a mine, using sulfates in their metabolism:

https://email.labxmediagroup.com/e2t/c/*N5LN8FBnm5FNW7_KrL92C9NMW0/*W3S-c0R1XLDBFV_2yBZ...

"Researchers have uncovered the first direct evidence of resident microbes in Kidd Creek Mine, a 3-kilometer-deep copper and zinc mine in Ontario. The findings, published last month (July 18) in Geomicrobiology Journal, confirm previous work indicating that ancient, sulfate-rich water in the region could support what researchers call “deep microbial life,” and add to growing evidence that there’s a vast biosphere thriving in the Earth’s crust that has little or no interaction with the surface.

“'This paper is groundbreaking, so to speak,” says John Spear, a microbial ecologist at the Colorado School of Mines who was not involved in the work. “They were able to get an idea of the amount of native microbial biomass . . . and they were able to confirm that the waters that the microbes are living in are host waters—they’re not contaminated or impacted by water coming from the surface.”

"Studies of deep mines and boreholes over the last decade have documented signs of microbes in several areas of the Earth’s continental crust—a hot and dark environment traditionally thought to be inhospitable to life.

***

"Compared to service water—water supplied to the mine from a nearby lake on the surface—the density of microbial organisms in the fracture water was low, the team found: approximately 1,000 to 10,000 cells/ml, as opposed to the 100,000 cells/ml in the water coming from above ground.

"The researchers also analyzed the metabolic activity of microbes in the sample, by incubating cells with various food sources and then recording whether or not that food was metabolized. This type of analysis can’t directly provide taxonomic information or detect microbes that aren’t active. But it did show, as Sherwood Lollar and her colleagues had predicted, that the active microbial community consisted almost entirely of sulfate reducers.

“'Sulfate reducers are using sulfate and some reduced carbon compound . . . to fix carbon in the subsurface,” notes Spear, “meaning that these sulfate reducers could be primary producers in the subsurface of the Kidd Creek Mine. And if it’s true there, over a mile deep, you wonder if this is true all around the Earth.”

***

“'The more we continue to show that life shows up in all of these different places, the more we understand that these are generalizable to the planet,” she says. “What it means, I would expect, is [that] we are likely to find these organisms almost anywhere we go look in these kinds of settings around the world.'”

Comment: The Earth is the perfect planet to support life everywhere. And it shows how diverse are the metabolic systems used.

Evolution: origin of eukaryotes:Archaea DNA similar to human

by David Turell @, Thursday, September 19, 2019, 20:55 (1890 days ago) @ David Turell

A new study compares Archaea DNA to eukaryote DNA in humans:

https://phys.org/news/2019-09-key-similarities-human-archaea-chromosomes.html

"The similar clustering of DNA in humans and archaeal chromosomes is significant because certain genes activate or deactivate based upon how they're folded.

"'The inaccurate bundling, or 'folding,' of DNA can lead to the wrong gene being switched on or off," Bell said. "Studies have shown that switching the wrong genes on or off during cellular growth in humans can lead to changes in gene expression that can ultimately be carcinogenic."

"Archaea are simple single-celled organisms that comprise one of the three domains of life on Earth. Although found in every type of environment, including the human body, archaea are poorly understood compared to the other two domains: bacteria and eukaryotes, which include mammals such as humans. They're also more similar to eukaryotes on the genetic level than bacteria.

"The IU study is the first to visualize the organization of DNA in archaeal chromosomes. The key similarity is the way in which the DNA is arranged into clusters—or "discrete compartmentalizations"—based upon their function.

"'When we first saw the interaction patterns of the archaea's DNA, we were shocked," Bell said. "It looked just like what has been seen with human DNA."

"The study is also the first to describe the protein used to assemble archaeal DNA during cellular growth. The researchers dubbed this large protein complex as "coalescin" due to its similarities to a protein in eukaryotes called "condensin."

The advantages to the use of archaea as a model for studying the organization of DNA during cellular growth in humans—and the relationship between that organization and the activation of genes that may trigger cancers—is their relative simplicity.

"'Human cells are horrifyingly complex, and understanding the rules that govern DNA folding is extremely challenging," Bell said. "The simplicity of archaea means that they've got the potential to be a terrific model to help understand the fundamentally related—but much more complicated—cellular processes in humans.'"

Comment: It was previously found that eukaryotes were more closely related to Archaea. Does that make bacteria a side branch?

Evolution: complexity of mammalian backbones

by David Turell @, Thursday, November 07, 2019, 23:31 (1841 days ago) @ David Turell

Highly complex and related to large energy use:

https://cosmosmagazine.com/biology/why-mammals-have-such-complex-backbones?utm_source=C...

"Compared to other vertebrate animals such as reptiles, mammals have complex and unexpectedly weird backbones.

"Their spines are essentially differently shaped bones arranged into sections, which is a key to their ability to move in so many different ways – as diverse as a cheetah running, a human walking, a bat flying and a whale swimming.

"A new study in the journal Nature Communications looks at how and why mammals’ backbones became so complex, and how this complexity changed through time.

***

"Co-author Ken Angielczyk, from the Field Museum of Natural History, US, says the study focuses on how mammals evolved from ancient relatives with simple spines to the complex structures we see now.

“'It looks like it’s not just a gradual accumulation of little changes over time – it's more discrete changes,” he says. “And one of these big changes may be related to changes in how mammals are able to move and breathe that let us be so active."

***

“'Basically, big step-wise jumps in evolution mean that the changes that were happening made a big difference in the organisms’ lives, making them better able to survive and pass on their genes.”

"Increasingly complex spines were such a good thing for mammal ancestors, the researchers argue, because they were among the changes related to higher activity levels.

"Compared to reptiles, modern mammals have very high metabolisms – we have more chemical reactions happening to keep our bodies going – and we’re more active.

In general, mammals can move more efficiently and have more stamina, but those benefits come with a cost: mammals have to breathe more than reptiles do, eat more, and need fur to keep their bodies warm enough to keep their systems going.

“'As part of our study, we found that modern mammals with the most complex backbones also usually have the highest activity levels,” says co-author Stephanie Pierce, also from Harvard.

“'And some changes in backbone complexity evolved at about the same time that other features associated with a more active lifestyle evolved, like fur or specialised muscles for breathing.”

“We’re interested in the big picture of how backbones evolve, and there are these long-standing ideas about it being related to the evolution of mammals’ respiration, locomotion, and high activity levels,” says Angielczyk.

“'We're trying to test and refine those hypotheses, and to use them to better understand the broader question of how complexity increases through evolution.”

“This study helps us answer an age-old question – how did life become so complex?” says Jones.

“'By looking at this example system, we show that discreet changes, when added up over the millennia, can produce what seems at first glance to be a long-term trend. The evolution of complexity is, dare I say it, complex!'"

Comment: this article certainly shows my theory that there is a drive to increased complexity that controls evolution. The authors are using Darwin-think but there is no evidence in their study as to how it happened or why it happened. They just assumed it naturally happened, and chance nature simply chose to be more complex. The need for design is obvious. As God controlled evolution, these were necessary steps to create humans.

Evolution: earliest mammals

by David Turell @, Monday, November 18, 2019, 01:13 (1831 days ago) @ David Turell

When the characteristics appeared dinosaurs were still around:

https://www.nature.com/articles/d41586-019-03170-7

"Mammals first appeared at least 178 million years ago, and scampered amid the dinosaurs until the majority of those beasts, with the exception of the birds, were wiped out 66 million years ago. But mammals didn’t have to wait for that extinction to diversify into many forms and species. “These new discoveries document a huge, hitherto-undreamed-of ecological diversity,” says Richard Cifelli, a palaeontologist at the University of Oklahoma in Norman.

***

"The latest finds are also offering clues to the evolution of key mammal features. For instance, the keen hearing of mammals is partly down to tiny bones in the middle ear — the malleus, incus and ectotympanic. But in the reptilian ancestors of mammals, these bones were part of the jaw, and were used for chewing instead of hearing. Mammal forerunners, such as shrew-like Morganucodon from 205 million years ago, sported a prototype of the mammal arrangement that allowed for both functions.

***

"Another unique trait of mammals is the sophisticated way they chew and ingest food in small parcels, rather than swallowing things whole as snakes and alligators do. To make that possible, mammals evolved a wide variety of complex teeth for biting and grinding food.

"But as babies, mammals are nourished another way — by suckling from their mother’s mammary glands. “Our whole group is named after this incredible biological innovation,” says Luo. Drinking milk is made possible by the ability to suck and swallow, aided by the hyoid bones in the throat and muscles that support them. This apparatus also forms the voice box.


"In July, Luo published a paper revealing a 165-million-year-old vole-sized docodont — a close relative of true mammals — that had the hyoid bones of its throat preserved14. Microdocodon gracilis is the earliest animal known to have been able to suckle like a modern mammal.

***

"Much of the constellation of features we think of as defining mammals — complex teeth, excellent senses, lactation, small litter size — might actually have evolved before true mammals, and quite quickly. “More and more it looks like it all came out in a very short burst of evolutionary experimentation,” Luo says. By the time mammal-like creatures were roaming around in the Mesozoic, he says, “the lineage has already acquired its modern look and modern biological adaptations”."

Comment: the same problems that surround the evolution of live birth, the accommodation of skull and pelvic size while a brain is enlarging as evolution goes forward, apply to suckling milk with special arrangements in the infant throat involving the special hyoid bone shape and function to allow suckling without drowning. The problem is designing at the same time changes in two separate individuals, mother and infants. Only design by a designer can accomplish this contemporaneous set of alterations. Darwin theory cannot answer this problem.

Evolution: earliest mammals

by dhw, Monday, November 18, 2019, 08:24 (1831 days ago) @ David Turell

QUOTE: "Much of the constellation of features we think of as defining mammals — complex teeth, excellent senses, lactation, small litter size — might actually have evolved before true mammals, and quite quickly. “More and more it looks like it all came out in a very short burst of evolutionary experimentation,” Luo says. By the time mammal-like creatures were roaming around in the Mesozoic, he says, “the lineage has already acquired its modern look and modern biological adaptations”."

DAVID: the same problems that surround the evolution of live birth, the accommodation of skull and pelvic size while a brain is enlarging as evolution goes forward, apply to suckling milk with special arrangements in the infant throat involving the special hyoid bone shape and function to allow suckling without drowning. The problem is designing at the same time changes in two separate individuals, mother and infants. Only design by a designer can accomplish this contemporaneous set of alterations. Darwin theory cannot answer this problem.

Thank you for another thought-provoking article. I agree with you that Darwin theory cannot answer the problem. We do not have any theory that can answer the problem. We only have speculative hypotheses. “Evolutionary experimentation” is an interesting phrase which would fit in equally with the concept of an experimenting God (as opposed to an always-in-charge God with a single purpose and the knowledge of how to achieve that purpose), or of cell communities finding different ways to enhance their chances of survival.

Evolution: earliest mammals

by David Turell @, Monday, November 18, 2019, 15:28 (1830 days ago) @ dhw

QUOTE: "Much of the constellation of features we think of as defining mammals — complex teeth, excellent senses, lactation, small litter size — might actually have evolved before true mammals, and quite quickly. “More and more it looks like it all came out in a very short burst of evolutionary experimentation,” Luo says. By the time mammal-like creatures were roaming around in the Mesozoic, he says, “the lineage has already acquired its modern look and modern biological adaptations”."

DAVID: the same problems that surround the evolution of live birth, the accommodation of skull and pelvic size while a brain is enlarging as evolution goes forward, apply to suckling milk with special arrangements in the infant throat involving the special hyoid bone shape and function to allow suckling without drowning. The problem is designing at the same time changes in two separate individuals, mother and infants. Only design by a designer can accomplish this contemporaneous set of alterations. Darwin theory cannot answer this problem.

dhw: Thank you for another thought-provoking article. I agree with you that Darwin theory cannot answer the problem. We do not have any theory that can answer the problem. We only have speculative hypotheses. “Evolutionary experimentation” is an interesting phrase which would fit in equally with the concept of an experimenting God (as opposed to an always-in-charge God with a single purpose and the knowledge of how to achieve that purpose), or of cell communities finding different ways to enhance their chances of survival.

Your answer neatly avoids the issue of an obvious need for a designer.

Evolution: earliest mammals

by dhw, Tuesday, November 19, 2019, 13:05 (1829 days ago) @ David Turell

QUOTE: "Much of the constellation of features we think of as defining mammals — complex teeth, excellent senses, lactation, small litter size — might actually have evolved before true mammals, and quite quickly. “More and more it looks like it all came out in a very short burst of evolutionary experimentation,” Luo says. By the time mammal-like creatures were roaming around in the Mesozoic, he says, “the lineage has already acquired its modern look and modern biological adaptations”."

DAVID: the same problems that surround the evolution of live birth, the accommodation of skull and pelvic size while a brain is enlarging as evolution goes forward, apply to suckling milk with special arrangements in the infant throat involving the special hyoid bone shape and function to allow suckling without drowning. The problem is designing at the same time changes in two separate individuals, mother and infants. Only design by a designer can accomplish this contemporaneous set of alterations. Darwin theory cannot answer this problem.

dhw: Thank you for another thought-provoking article. I agree with you that Darwin theory cannot answer the problem. We do not have any theory that can answer the problem. We only have speculative hypotheses. “Evolutionary experimentation” is an interesting phrase which would fit in equally with the concept of an experimenting God (as opposed to an always-in-charge God with a single purpose and the knowledge of how to achieve that purpose), or of cell communities finding different ways to enhance their chances of survival.

DAVID: Your answer neatly avoids the issue of an obvious need for a designer.

Your comment neatly avoids my proposal that the article could be used to support the theory of an experimenting designer as opposed to a designer with a single purpose and the knowledge to achieve that purpose. It also neatly avoids the proposal that all the changes might be designed through the (possibly God-given) intelligence of the cell communities of which all organisms are composed.

Evolution: earliest mammals

by David Turell @, Tuesday, November 19, 2019, 14:33 (1829 days ago) @ dhw

QUOTE: "Much of the constellation of features we think of as defining mammals — complex teeth, excellent senses, lactation, small litter size — might actually have evolved before true mammals, and quite quickly. “More and more it looks like it all came out in a very short burst of evolutionary experimentation,” Luo says. By the time mammal-like creatures were roaming around in the Mesozoic, he says, “the lineage has already acquired its modern look and modern biological adaptations”."

DAVID: the same problems that surround the evolution of live birth, the accommodation of skull and pelvic size while a brain is enlarging as evolution goes forward, apply to suckling milk with special arrangements in the infant throat involving the special hyoid bone shape and function to allow suckling without drowning. The problem is designing at the same time changes in two separate individuals, mother and infants. Only design by a designer can accomplish this contemporaneous set of alterations. Darwin theory cannot answer this problem.

dhw: Thank you for another thought-provoking article. I agree with you that Darwin theory cannot answer the problem. We do not have any theory that can answer the problem. We only have speculative hypotheses. “Evolutionary experimentation” is an interesting phrase which would fit in equally with the concept of an experimenting God (as opposed to an always-in-charge God with a single purpose and the knowledge of how to achieve that purpose), or of cell communities finding different ways to enhance their chances of survival.

DAVID: Your answer neatly avoids the issue of an obvious need for a designer.

dhw: Your comment neatly avoids my proposal that the article could be used to support the theory of an experimenting designer as opposed to a designer with a single purpose and the knowledge to achieve that purpose. It also neatly avoids the proposal that all the changes might be designed through the (possibly God-given) intelligence of the cell communities of which all organisms are composed.

Again you revert to a 'possible' designer, when the evidence is clear a designer is required. How can there be obvious design without an actual designer?

Evolution: earliest mammals

by dhw, Wednesday, November 20, 2019, 11:30 (1828 days ago) @ David Turell

dhw: Thank you for another thought-provoking article. I agree with you that Darwin theory cannot answer the problem. We do not have any theory that can answer the problem. We only have speculative hypotheses. “Evolutionary experimentation” is an interesting phrase which would fit in equally with the concept of an experimenting God (as opposed to an always-in-charge God with a single purpose and the knowledge of how to achieve that purpose), or of cell communities finding different ways to enhance their chances of survival.

DAVID: Your answer neatly avoids the issue of an obvious need for a designer.

dhw: Your comment neatly avoids my proposal that the article could be used to support the theory of an experimenting designer as opposed to a designer with a single purpose and the knowledge to achieve that purpose. It also neatly avoids the proposal that all the changes might be designed through the (possibly God-given) intelligence of the cell communities of which all organisms are composed.

DAVID: Again you revert to a 'possible' designer, when the evidence is clear a designer is required. How can there be obvious design without an actual designer?

You have again neatly avoided my proposal that the article supports the concept of an experimenting designer (as opposed to one who has a single purpose in mind and knows exactly how to achieve it), and after all these years, you still haven’t grasped the concept of multiple designers (possibly with God-given intelligence) in the form of the cells/cell communities of which all organisms are composed.

Evolution: earliest mammals

by David Turell @, Wednesday, November 20, 2019, 19:25 (1828 days ago) @ dhw

dhw: Thank you for another thought-provoking article. I agree with you that Darwin theory cannot answer the problem. We do not have any theory that can answer the problem. We only have speculative hypotheses. “Evolutionary experimentation” is an interesting phrase which would fit in equally with the concept of an experimenting God (as opposed to an always-in-charge God with a single purpose and the knowledge of how to achieve that purpose), or of cell communities finding different ways to enhance their chances of survival.

DAVID: Your answer neatly avoids the issue of an obvious need for a designer.

dhw: Your comment neatly avoids my proposal that the article could be used to support the theory of an experimenting designer as opposed to a designer with a single purpose and the knowledge to achieve that purpose. It also neatly avoids the proposal that all the changes might be designed through the (possibly God-given) intelligence of the cell communities of which all organisms are composed.

DAVID: Again you revert to a 'possible' designer, when the evidence is clear a designer is required. How can there be obvious design without an actual designer?

dhw: You have again neatly avoided my proposal that the article supports the concept of an experimenting designer (as opposed to one who has a single purpose in mind and knows exactly how to achieve it), and after all these years, you still haven’t grasped the concept of multiple designers (possibly with God-given intelligence) in the form of the cells/cell communities of which all organisms are composed.

My avoidance comes from my knowledge of your knowledge of my thoughts. I'll bother to repeat: Since we do not know God intimately, we cannot know if He experiments with His designs. My own feeling is that He is too knowledgeable and purposeful for that. I have totally grasped your theory that there are multiple designers and I have totally rejected that approach. For me God is the sole designer, and cells in a multicellular organism do not have any such capacity to design a species for the future.

Evolution: earliest mammals

by dhw, Thursday, November 21, 2019, 10:33 (1827 days ago) @ David Turell

DAVID: Your answer neatly avoids the issue of an obvious need for a designer.

dhw: Your comment neatly avoids my proposal that the article could be used to support the theory of an experimenting designer as opposed to a designer with a single purpose and the knowledge to achieve that purpose. It also neatly avoids the proposal that all the changes might be designed through the (possibly God-given) intelligence of the cell communities of which all organisms are composed.

DAVID: Again you revert to a 'possible' designer, when the evidence is clear a designer is required. How can there be obvious design without an actual designer?

dhw: You have again neatly avoided my proposal that the article supports the concept of an experimenting designer (as opposed to one who has a single purpose in mind and knows exactly how to achieve it), and after all these years, you still haven’t grasped the concept of multiple designers (possibly with God-given intelligence) in the form of the cells/cell communities of which all organisms are composed.

DAVID: My avoidance comes from my knowledge of your knowledge of my thoughts. I'll bother to repeat: Since we do not know God intimately, we cannot know if He experiments with His designs. My own feeling is that He is too knowledgeable and purposeful for that. I have totally grasped your theory that there are multiple designers and I have totally rejected that approach. For me God is the sole designer, and cells in a multicellular organism do not have any such capacity to design a species for the future.

You had accused me of avoiding the issue of the need for a designer. I did not avoid the issue, and offered two different hypotheses concerning design. The article could support the experimenting designer, but you have a fixed belief in a designer who knows everything in advance. The article also fits in with the hypothesis of cellular design, but you have a fixed belief that cells are incapable of “evolutionary novelty” (Shapiro). But it is pleasing to note your acknowledgement that we cannot know. All the more reason why we should keep an open mind.

Evolution: earliest mammals

by David Turell @, Thursday, November 21, 2019, 19:55 (1827 days ago) @ dhw

DAVID: Your answer neatly avoids the issue of an obvious need for a designer.

dhw: Your comment neatly avoids my proposal that the article could be used to support the theory of an experimenting designer as opposed to a designer with a single purpose and the knowledge to achieve that purpose. It also neatly avoids the proposal that all the changes might be designed through the (possibly God-given) intelligence of the cell communities of which all organisms are composed.

DAVID: Again you revert to a 'possible' designer, when the evidence is clear a designer is required. How can there be obvious design without an actual designer?

dhw: You have again neatly avoided my proposal that the article supports the concept of an experimenting designer (as opposed to one who has a single purpose in mind and knows exactly how to achieve it), and after all these years, you still haven’t grasped the concept of multiple designers (possibly with God-given intelligence) in the form of the cells/cell communities of which all organisms are composed.

DAVID: My avoidance comes from my knowledge of your knowledge of my thoughts. I'll bother to repeat: Since we do not know God intimately, we cannot know if He experiments with His designs. My own feeling is that He is too knowledgeable and purposeful for that. I have totally grasped your theory that there are multiple designers and I have totally rejected that approach. For me God is the sole designer, and cells in a multicellular organism do not have any such capacity to design a species for the future.

dhw: You had accused me of avoiding the issue of the need for a designer. I did not avoid the issue, and offered two different hypotheses concerning design. The article could support the experimenting designer, but you have a fixed belief in a designer who knows everything in advance. The article also fits in with the hypothesis of cellular design, but you have a fixed belief that cells are incapable of “evolutionary novelty” (Shapiro). But it is pleasing to note your acknowledgement that we cannot know. All the more reason why we should keep an open mind.

And I have interpreted Shapiro for you, so you can realize he has only studied free-living bacteria looking for possible speciation mechanisms. Bacteria have reasonable change options so they can survive.

Evolution: Haeckels fake news

by David Turell @, Thursday, December 26, 2019, 15:33 (1792 days ago) @ David Turell

Alteration of facts in drawings:

https://quillette.com/2019/12/21/the-many-faces-of-scientific-fraud/

In the second half of the nineteenth century, the German biologist Ernst Haeckel was convinced that, according to his famous maxim, “ontogeny recapitulates phylogeny”—in other words, that over the course of its embryonic development, an animal passes through different stages comparable to those of the previous species in its evolutionary lineage. In Anthropogenie oder Entwicklungsgeschichte des Menschen (1874), Haeckel published a plate of his drawings showing the three successive stages of the embryonic development of the fish, salamander, turtle, chicken, rabbit, pig, and human being. A single glance at the drawings reveals that the embryos are very similar at an early stage in development.

As soon as the book was published, these illustrations met with serious criticism from some of Haeckel’s colleagues and rival embryologists. Yet it would take a full century and the comparison of Haeckel’s drawings with photographs of embryos of the same species for it to become clear that the former were far closer to works of art than scientific observation. Today, we know that ontogeny does not recapitulate phylogeny, and that the highly talented artist Ernst Haeckel drew these plates of embryos to illustrate perfectly a theory to which he was deeply attached.

Comment: I am so old, I was taught in school that “ontogeny recapitulates phylogeny”. Is it possible it is taught today?

Evolution: Haeckels fake news

by dhw, Friday, December 27, 2019, 12:34 (1791 days ago) @ David Turell

DAVID: I am so old, I was taught in school that “ontogeny recapitulates phylogeny”. Is it possible it is taught today?

I am almost as old as you, and have certainly grown up and old with the impression that this was true. Some websites say it is true of the very early stages of the embryo, and if it is, that’s good enough for me. It has to diverge sooner rather than later, since there are such vast differences between, say, elephants, cats and humans.

Evolution: Haeckels fake news

by David Turell @, Friday, December 27, 2019, 15:19 (1791 days ago) @ dhw

DAVID: I am so old, I was taught in school that “ontogeny recapitulates phylogeny”. Is it possible it is taught today?

dhw: I am almost as old as you, and have certainly grown up and old with the impression that this was true. Some websites say it is true of the very early stages of the embryo, and if it is, that’s good enough for me. It has to diverge sooner rather than later, since there are such vast differences between, say, elephants, cats and humans.

Since all embryos start as spheres of cells before differentiation hey will be similar. Once differentiation has progressed, they all differ. What current websites still support this out dated idea?

Evolution: Haeckels fake news

by dhw, Saturday, December 28, 2019, 10:59 (1790 days ago) @ David Turell

DAVID: I am so old, I was taught in school that “ontogeny recapitulates phylogeny”. Is it possible it is taught today?

dhw: I am almost as old as you, and have certainly grown up and old with the impression that this was true. Some websites say it is true of the very early stages of the embryo, and if it is, that’s good enough for me. It has to diverge sooner rather than later, since there are such vast differences between, say, elephants, cats and humans.

DAVID: Since all embryos start as spheres of cells before differentiation they will be similar. Once differentiation has progressed, they all differ. What current websites still support this out dated idea?

Of course things differ once differentiation progresses! Here are some websites for you:


How Embryonic Homologies Support Evolution
https://www.learnreligions.com/how-embryonic-homologies-support-evolution-249886

How does embryology provide evidence for evolution - Answers
https://www.answers.com/Q/How_does_embryology_provide_evidence_for_evolution

8 Scientific Discoveries That Prove Evolution is Real
https://io9.gizmodo.com/8-scientific-discoveries-that-prove-evolution-is-real-1729902558

Evolution: Haeckels fake news

by David Turell @, Saturday, December 28, 2019, 16:13 (1790 days ago) @ dhw

DAVID: I am so old, I was taught in school that “ontogeny recapitulates phylogeny”. Is it possible it is taught today?

dhw: I am almost as old as you, and have certainly grown up and old with the impression that this was true. Some websites say it is true of the very early stages of the embryo, and if it is, that’s good enough for me. It has to diverge sooner rather than later, since there are such vast differences between, say, elephants, cats and humans.

DAVID: Since all embryos start as spheres of cells before differentiation they will be similar. Once differentiation has progressed, they all differ. What current websites still support this out dated idea?

dhw: Of course things differ once differentiation progresses! Here are some websites for you:


How Embryonic Homologies Support Evolution
https://www.learnreligions.com/how-embryonic-homologies-support-evolution-249886

How does embryology provide evidence for evolution - Answers
https://www.answers.com/Q/How_does_embryology_provide_evidence_for_evolution

8 Scientific Discoveries That Prove Evolution is Real
https://io9.gizmodo.com/8-scientific-discoveries-that-prove-evolution-is-real-1729902558

Thank you. Ah yes, homologies fit evolution, but Haeckels drawings are not correct.

Evolution: Haeckels fake news

by dhw, Sunday, December 29, 2019, 10:40 (1789 days ago) @ dhw

DAVID: I am so old, I was taught in school that “ontogeny recapitulates phylogeny”. Is it possible it is taught today?

dhw: I am almost as old as you, and have certainly grown up and old with the impression that this was true. Some websites say it is true of the very early stages of the embryo, and if it is, that’s good enough for me. It has to diverge sooner rather than later, since there are such vast differences between, say, elephants, cats and humans.

DAVID: Since all embryos start as spheres of cells before differentiation they will be similar. Once differentiation has progressed, they all differ. What current websites still support this out dated idea?

dhw: Of course things differ once differentiation progresses! Here are some websites for you:

How Embryonic Homologies Support Evolution
https://www.learnreligions.com/how-embryonic-homologies-support-evolution-249886

How does embryology provide evidence for evolution - Answers
https://www.answers.com/Q/How_does_embryology_provide_evidence_for_evolution

8 Scientific Discoveries That Prove Evolution is Real
https://io9.gizmodo.com/8-scientific-discoveries-that-prove-evolution-is-real-1729902558

DAVID: Thank you. Ah yes, homologies fit evolution, but Haeckels drawings are not correct.

That does not invalidate his theory, and “not correct” is very different from “fake”. But I don’t know enough about the case to settle on the correct vocabulary!

Evolution: Haeckels fake news

by David Turell @, Sunday, December 29, 2019, 15:40 (1789 days ago) @ dhw

DAVID: I am so old, I was taught in school that “ontogeny recapitulates phylogeny”. Is it possible it is taught today?

dhw: I am almost as old as you, and have certainly grown up and old with the impression that this was true. Some websites say it is true of the very early stages of the embryo, and if it is, that’s good enough for me. It has to diverge sooner rather than later, since there are such vast differences between, say, elephants, cats and humans.

DAVID: Since all embryos start as spheres of cells before differentiation they will be similar. Once differentiation has progressed, they all differ. What current websites still support this out dated idea?

dhw: Of course things differ once differentiation progresses! Here are some websites for you:

How Embryonic Homologies Support Evolution
https://www.learnreligions.com/how-embryonic-homologies-support-evolution-249886

How does embryology provide evidence for evolution - Answers
https://www.answers.com/Q/How_does_embryology_provide_evidence_for_evolution

8 Scientific Discoveries That Prove Evolution is Real
https://io9.gizmodo.com/8-scientific-discoveries-that-prove-evolution-is-real-1729902558

DAVID: Thank you. Ah yes, homologies fit evolution, but Haeckels drawings are not correct.

dhw: That does not invalidate his theory, and “not correct” is very different from “fake”. But I don’t know enough about the case to settle on the correct vocabulary!

We do simply know we come from past forms.

Evolution: Haeckels fake news

by David Turell @, Thursday, November 12, 2020, 00:03 (1471 days ago) @ David Turell

Haeckel's fake drawings:

https://evolutionnews.org/2020/11/as-science-frauds-go-haeckel-beats-piltdown-man/

No, our embryos do not have gill sits. This shows his drawings from 1874. Pure propaganda.

Evolution: very early pre-mammal found

by David Turell @, Wednesday, November 04, 2020, 19:53 (1478 days ago) @ David Turell

220 million years old:

https://www.sciencedaily.com/releases/2020/11/201104001309.htm

"Fossilized jaw bone fragments of a rat-like creature found at the Petrified Forest National Park in Arizona last year by a Virginia Tech College of Science Ph.D. candidate are in fact a newly discovered 220-million-year-old species of cynodont or stem-mammal, a precursor of modern-day mammals.

***

"'This discovery sheds light on the geography and environment during the early evolution of mammals," Kligman said. "It also adds to evidence that humid climates played an important role in the early evolution of mammals and their closest relatives. Kataigidodon was living alongside dinosauromorphs and possibly early dinosaurs related to Coelophysis -- a small bipedal predator -- and Kataigidodon was possibly prey of these early dinosaurs and other predators like crocodylomorphs, small coyote-like quadrupedal predators related to living crocodiles."

"Kligman added that finding a fossil that is part of Cynodontia, which includes close cousins of mammals, such as Kataigidodon, as well as true mammals, from Triassic rocks is an extremely rare event in North America. Prior to Kligman's discovery, the only other unambiguous cynodont fossil from the Late Triassic of western North America was the 1990 discovery of a braincase of Adelobasileus cromptoni in Texas. Note that 220 million years ago, modern day Arizona and Texas were located close to the equator, near the center of the supercontinent Pangaea. Kataigidodon would have been living in a lush tropical forest ecosystem.

***

"Along with the jawbone fossils, Kligman found incisor, canine, and complex-postcanine teeth, similar to modern day mammals. Given the pointed shape of its teeth and small body size, it likely fed on a diet of insects, Kligman added. (Why are jaw fossils commonly found, even among small specimens? According to Kligman, the fossil record is "biased" toward only preserving the largest and most robust bones in a skeleton. The other smaller or more fragile bones -- ribs, arms, feet -- disappear.)"

Comment: So our branch goes way back showing how one cannot chop up evolution into segments. Everything present and past relates.

Evolution: reptile and mammal backbones differ

by David Turell @, Tuesday, March 02, 2021, 19:05 (1360 days ago) @ David Turell

They evolved in different directions:

https://phys.org/news/2021-03-mammal-ancestors-unique.html

"Open any anatomy textbook and you'll find the long-standing hypothesis that the evolution of the mammal backbone, which is uniquely capable of sagittal (up and down) movements, evolved from a backbone that functioned similar to that of living reptiles, which move laterally (side-to-side). This so called "lateral-to-sagittal" transition was based entirely on superficial similarities between non-mammalian synapsids, the extinct forerunners of mammals, and modern-day lizards.

"In a paper published on March 2 in Current Biology, a team of researchers led by Harvard University challenge the "lateral-to-sagittal" hypothesis by measuring vertebral shape across a broad sample of living and extinct amniotes (reptiles, mammals, and their extinct relatives). Using cutting-edge techniques they map the impact of evolutionary changes in shape on the function of the vertebral column and show that non-mammalian synapsids moved their backbone in a manner that was distinctly their own and quite different from any living animal.

***

"'Lizards and mammals diverged from one another millions of years ago and they've each gone on their own evolutionary journey. We show that living lizards don't represent any sort of ancestral morphology or function that the two groups would have had in common so long ago."

***

"'Reptiles have been evolving just as long as mammals and because of that there's just as much time for changes and specializations to accumulate for reptiles. If you look at the vertebrae of a modern lizard or crocodile their vertebrae are actually very different from early ancestors of mammals and reptiles that lived at the same time around 300 million years ago. Both living mammals and reptiles have accumulated their own set of specializations over evolutionary time."

***

"'We were able to show that non-mammalian synapsids have a different combination of functions in their backbone to both living reptiles and mammals," Jones said, "and in the course of that evolution they weren't just traversing from the reptile-like lateral to the mammal-like sagittal bending, they were actually on a completely distinctive path in which they were evolving from a separate condition."

"'The historical expectation is that the synapsid ancestors of mammals were making the same set of tradeoffs that modern reptiles do. But it turns out that they have an entirely different set of tradeoffs," Angielczyk said. "The expectation that reptiles would retain ancestral locomotor patterns that existed over 320 million years ago is too simple."

"The results show the backbones of non-mammalian synapsids were actually quite stiff and completely unlike those of lizards which are very compliant in the lateral direction. Further, during the evolution of mammals, new functions were added to this stiff ancestral foundation, including sagittal bending in the posterior back and twisting up front. The addition of these new functions was pivotal in building the functionally diverse mammalian backbone, allowing modern-day mammals to run really fast and rotate their spine to groom their fur.

"'By rigorously analyzing the fossil record, we are able to reject the simplistic lateral-to-sagittal hypothesis for a much more complex and interesting evolution story," Pierce said. "We are now revealing the evolutionary path towards the formation of the unique mammalian backbone.'"

Comment: A clear exposition of the continuity in evolutionary changes, but dhw objects to this process finally leading to humans.

Evolution: origin of eukaryotes: Archaea candidate found

by David Turell @, Thursday, January 16, 2020, 00:24 (1772 days ago) @ David Turell

Finally cultured:

https://arstechnica.com/science/2017/01/microbes-found-that-are-the-closest-living-rela...

"Last year, a hydrothermal vent in the Arctic named Loki's Castle yielded organisms that picked up the name Lokiarchaea. Now, researchers have used Lokiarchaea's genome to find a large group of related species that they are naming the Asgard superphylum. Genetically, these organisms are the closest relatives of complex cells. The relationship is so close that all organisms with complex cells may simply be one branch of this group.

***

"So, what sort of genes do the residents of Asgard have? Lots of things that we had thought were unique to eukaryotes. The proteins made from these genes do things like managing membranes internal to the cell, constructing a skeleton-like network of fibers within the cell, and shifting other proteins to specific locations within the cell. They also make specialized proteins that destroy defective proteins and repair damaged DNA.

"Given these findings, we shouldn't be surprised that a larger tree-building exercise grouped all eukaryotes with the Asgard archaea—hence the argument that there are only two domains of life. At this point, it's not possible to tell whether they are separate branches or if eukaryotes are an offshoot of a specific phylum, like Heimdallarchaeota.

"All of this, the authors argue, make the case that some of the basic features of eukaryotes existed before they swallowed a bacteria for energy production. And these same features still exist today in the archaea.

"That idea, they point out, isn't as radical as it once was. Far from being featureless, uniform collections of proteins and other molecules, we've begun to discover many examples of structure inside bacteria and archaea, from internal membranes to skeleton-like structures. It just appears that the Asgardians put together a more complete package—and the one that happened to produce eukaryotes.

"Obviously, we'd like to take a closer look at these organisms and get a better sense of their internals. But the prospects aren't great. Most of them are very rare in their environment, and the Odinarcheota seem to only be present in extreme high-temperature environments. And, aside from the fact that they only grow in environments that lack oxygen, we have no idea of the sort of conditions they do like. So, while we're sure they're out there, it may be a while before we can appreciate how they might have given rise to complex cells—and, ultimately, us."

Comment: thank goodness for Carl Woese who found Archaea. We appear to be direct descendants of these bugs, while bacteria are kept around to facilitate our lives

Evolution: complexify or not

by David Turell @, Saturday, January 18, 2020, 20:15 (1769 days ago) @ David Turell

It is interesting that some animals appear and do not change to any real degree and others make enormous changes. Scorpions show very little change from the earliest ones found:

https://www.smithsonianmag.com/science-nature/worlds-oldest-scorpions-437-million-year-...

"...new research is pushing the scorpion timeline further back than ever before and may help pinpoint the traits that helped these pint-sized predators make a living on land. Today in Scientific Reports, paleontologists announce the discovery of the oldest known scorpions to date: a pristinely preserved pair of 437-million-year-old fossils, complete with what seem to be venom-packed tails.

***

"Together with other, younger fossils from the same geologic period, the ancient arachnids suggest that scorpions have looked and acted in much the same way ever since they first appeared on Earth.

***

"Early scorpions could blur the line between sea- and land-dwellers. Something had to crawl out of the water first, perhaps adopting an amphibian-like lifestyle. Parioscorpio’s physique, a mashup of marine and terrestrial traits, hints it was a good candidate for this double life.

"The heads of more recent scorpion species are adorned with multiple rows of beady, pinprick eyes. But Parioscorpio saw the world through bulbous, front-facing compound eyes, similar to the ones still found on today’s insects and crustaceans, as well as its ocean-based ancestors.

"Most of Parioscorpio’s other body parts, however, looked more contemporary. Like the scorpions that plague us today, this ancient animal boasted clawed pincers and a tail that likely tapered into a venomous stinger (though the actual tip, if it existed, has been lost to time). Even its insides were a match: The fossils were so exquisitely entombed that Wendruff could still see the delicate outlines of a simple tube-like gut and a series of hourglass-shaped structures that might have housed their hearts—all of which resembled the innards of modern land-dwelling scorpions.

“'The amazing preservation of the internal anatomy … reiterates how the [scorpion] ground plan has stayed the same, not just on the outside, but the inside, too,” says Lorenzo Prendini, a scorpion evolution expert at the American Museum of Natural History who helped uncover another batch of Silurian fossils from this lineage, but wasn’t involved in the new study. “It’s an ‘if it ain’t broke, don’t fix it’ mentality.'”

Comment: There are many sorts of examples of change or no change: it seems scorpions never evolved much from their start. Mammals jumped into the water and became whales. Humans quickly evolved from apes. We can look for circumstances that pushed the changes but the reason we find as guesses and at times the changes are unreasonable. Mammal did not need to enter the water, as most mammals have survived just as they are. Apes have remained just fine over eight million years. Human appearance was not required. Which raises the observation that evolution could be following a drive by a designer.

Evolution: a virus with unrelated new genes

by David Turell @, Friday, February 14, 2020, 14:46 (1742 days ago) @ David Turell

Can this virus be part of common descent?:

https://www.biorxiv.org/content/10.1101/2020.01.28.923185v1

"Abstract
Here we report the discovery of Yaravirus, a new lineage of amoebal virus with a puzzling origin and phylogeny. Yaravirus presents 80 nm-sized particles and a 44,924 bp dsDNA genome encoding for 74 predicted proteins. More than 90% (68) of Yaravirus predicted genes have never been described before, representing ORFans. Only six genes had distant homologs in public databases: an exonuclease/recombinase, a packaging-ATPase, a bifunctional DNA primase/polymerase and three hypothetical proteins. Furthermore, we were not able to retrieve viral genomes closely related to Yaravirus in 8,535 publicly available metagenomes spanning diverse habitats around the globe. The Yaravirus genome also contained six types of tRNAs that did not match commonly used codons. Proteomics revealed that Yaravirus particles contain 26 viral proteins, one of which potentially representing a novel capsid protein with no significant homology with NCLDV major capsid proteins but with a predicted double-jelly roll domain. Yaravirus expands our knowledge of the diversity of DNA viruses. The phylogenetic distance between Yaravirus and all other viruses highlights our still preliminary assessment of the genomic diversity of eukaryotic viruses, reinforcing the need for the isolation of new viruses of protists.

"Significance statement Most of the known viruses of amoeba have been seen to share many features that eventually prompted authors to classify them into common evolutionary groups. Here we describe Yaravirus, an entity that could represent either the first isolated virus of Acanthamoeba spp. out of the group of NCLDVs or, in alternative evolutive scenario, it is a distant and extremely reduced virus of this group. Contrary to what is observed in other isolated viruses of amoeba, Yaravirus is not represented by a large/giant particle and a complex genome, but at the same time carries an important number of previously undescribed genes, including one encoding a novel major capsid protein. Metagenomic approaches also testified for the rarity of Yaravirus in the environment."

comment: over 90% of genes are entirely new, and the remainder only distantly related to known genes. Where did this come from? Did it invent itself or was it designed. Evolution gets stranger and stranger.

Evolution: origin of eukaryotes: dinosaur body temperature

by David Turell @, Sunday, February 16, 2020, 20:18 (1740 days ago) @ David Turell

Poikilothermic or homeothermic? Study says probably homeothermic based on fossil egg shells:

https://www.newscientist.com/article/2233396-75-million-year-old-eggshells-suggest-most...

"An analysis of fossil eggshells may have settled a long-running debate about dinosaurs, suggesting that all species were warm-blooded.

"This also means the ancestors of dinosaurs must have been warm-blooded too, says Robin Dawson at Yale University, who led the research.

"It is now mostly agreed that the feathered dinosaurs called theropods that gave rise to birds were warm-blooded, but there is still a debate about whether other groups of dinosaurs were too. Until recently, we had only indirect methods of working out the body temperature of ancient animals, so there was no way to be sure.

"There is a way to work out the temperature at which organic matter forms inside bodies based on carbon and oxygen isotopes. This technique can be applied to eggshells to reveal the body temperature of the mother when the shells formed.

"One belonged to a theropod called Troodon formosus, and another to a duck-billed dinosaur called Maiasaura peeblesorum. The researchers are confident the third eggshell belonged to a sauropod known as a dwarf titanosaur, although the dinosaur hasn’t yet been definitively identified.

"The team’s analysis suggests the duck-billed dinosaur had a body temperature of 44°C, the troodon had a temperature up to 38°C and the dwarf titanosaur 36°C – all warmer than the environments they lived in.

"Crucially, duck-billed dinosaurs belonged to a different group of dinosaurs from theropods and sauropods, which are more closely related to each other. This group includes animals such as triceratops and stegosaurs. It is much less likely that warm-bloodedness evolved independently in each of these three major types of dinosaur, says Dawson, which implies all dinosaur groups would have shared this trait, pointing to an ancestral origin.

“'If these three major groups had the capacity to use their metabolism to raise body temperature, that is something that stands for them all,” she says.

"However, it appears the troodon’s body temperature sometimes dropped as low as 28°C, says Dawson. So it may have been heterothermic: able to lower its body temperature to save energy, as many present-day birds and mammals can. (my bold)

"What these findings don’t tell us is why dinosaurs’ ancestors evolved to be warm-blooded, something that is still hotly debated."

Comment: Note my bold. All life needs to eat for the energy to survive, so part of the decision about body temperature has to be concerned with availability of food supply. From the standpoint of survival fitness, poikilothermic should survive more easily, so what is the evolutionary advantage of homeothermic body temperature? The animal can live anywhere in extreme environmental temperatures . Raising body temperature with fever fights infections. And finally higher temperatures means enzymatic reactions run at higher speed,

Evolution: reintroduction shows econiche importance

by David Turell @, Monday, February 17, 2020, 20:17 (1739 days ago) @ David Turell

Just as reintroducing wolves in Yellowstone has changed the local ecology, bison are doing it in Banff National Park in Canada:

https://www.cbc.ca/news/canada/calgary/banff-bison-reintroduction-project-1.5458896?utm...

"Parks Canada is at the halfway point of a five-year pilot project, which aims to test the reintroduction of wild plains bison to the park's ecosystem.

"The project began in February 2017, when 16 bison were relocated from Elk Island National Park, east of Edmonton. The large ungulates were moved to a fenced pasture in the remote Panther River Valley, about 40 kilometres north of the Banff townsite.

"The animals now number 36 and are roaming free in a 1,200-square-kilometre reintroduction zone. The herd population is expected to surpass 300 by 2031.

"'They're revisiting many of the areas their ancestors did and as they're literally grazing down the grasses in places, they're revealing old wallow spots that would have been there from hundreds, or even thousands, of years ago and in fact they're reactivating them," said Karsten Heuer, the manager of the bison reintroduction project.

"Heuer said the wallows are reactivating the ecosystem by tempting birds back to the meadows, and creating itinerant habitats for amphibians that love the puddles created by the imprints left as bison roll in the grass.

***

"Bison used to be abundant on the Great Plains, which stretch from north of Edmonton down to Texas. Small numbers roamed what is now Banff National Park for 10,000 years until they were nearly driven to extinction by human activity prior to the park's creation in 1885.

"'This is kind of neat to learn our lessons, to reverse a historic wrong on a small scale … and then hopefully inspire other similar projects," Heuer said.

"Heuer told council it's been powerful to witness their return, both for ecological reasons and for the cultural significance the bison have for Indigenous people.

"'A large impetus for this project is to inspire people, and to inspire people with the message and the hope of reconciliation and reintroduction and renewal," he said.

"'It's hard to explain without maybe sounding a bit cliché, but bison are to the First Nations cultures around here what the salmon were to the coastal and caribou were to the northern cultures … to witness that hope and sense of rejuvenation is pretty powerful."

"Heuer said it's too early to say for sure, but his personal opinion is that the experiment is going well. The animals are largely healthy, and just one calf has died from what's believed to be natural causes.

"Wolves have largely left the bison alone as well."

Comment: Makes the same point as always. Econiches are extremely important for life to exist in diverse proportions. Wolves can only take down a sickly old bison or an unguarded calf.

Evolution: a multicellular animal needs no oxygen

by David Turell @, Monday, February 24, 2020, 21:50 (1732 days ago) @ David Turell

Newly found, with no explanation as to why it is different:

https://www.newscientist.com/article/2235009-animal-that-doesnt-need-oxygen-to-survive-...

“'It has lost the ability to breathe oxygen,” says Dorothee Huchon at Tel Aviv University in Israel. It remains a mystery how this animal, a parasite that infects salmon, gets the energy it needs without oxygen, she says, but it most likely steals it from its host.

***

"Each mitochondrion has its own tiny genome in addition to the main genome in the cell nucleus. But when Huchon’s team sequenced the DNA of Henneguya salminicola, which is related to jellyfish, they thought they had made a mistake because they found no mitochondrial DNA at all.

"Further studies confirmed the finding. When the team stained H. salminicola with a blue fluorescent dye that binds to DNA, no DNA was visible in cells outside the nucleus. By contrast, when they stained a closely related parasite, blue dots corresponding to mitochondrial genomes were visible outside the nucleus.

"So while the cells of H. salminicola have structures that look like mitochondria, they cannot make the enzymes needed to use oxygen to produce ATP. “These are not true mitochondria,” says Huchon.

"This means H. salminicola is a multicellular animal that can survive entirely without oxygen. “There are plenty that can go for extended periods without, but nothing that can get through the whole life cycle,” says Nick Lane of University College London.

"We don’t know why H. salminicola has lost this ability while all of its immediate relatives that we have identified use oxygen. As these parasites move through their life cycle, they may also live inside a worm host where they would have to make do with virtually no oxygen, as well. The worm host of H. salminicola has never been identified, but it too may live in sediments with very low oxygen levels, Huchon says.

"Although the parasite is harmless to humans, it is a major problem for fish farmers because it creates unsightly white spots in the flesh of infected fish."

Comment: Very unusual branch of evolution. Perhaps the host worm gives it a little oxygen. But it fits into its necessary econiche

Evolution: eyes are as complex as the human brain

by David Turell @, Thursday, February 27, 2020, 05:53 (1730 days ago) @ David Turell

The evolution of the eye is highly specific in what is required:

https://evolutionnews.org/2020/02/the-evolution-of-the-eye-demystified/

"I wish to emphasize the irreducible complexity of the visual cycle, on top of the sheer anatomical complexity of the human eye with its over two million working parts, second only to the human brain in complexity.

***

"Eyespots are the simplest eyes found in nature. They are composed of rhodopsins, which are light-sensitive proteins, and orange-red colored pigment granules, which have their color by selectively absorbing or reflecting light. The color spectrum, which is reflected, is the one that becomes visible to our eyes.

***

"As an interdependent system, this visual system requires certain essential components, including rhodopsin proteins, a pigment spot, and ion flux. If one part is missing, the organism cannot move by phototaxis. Natural selection will not select any intermediate evolutionary step, since the system, with any of the required elements missing, would confer no function, and thus no survival advantage.

***

"There is no vision without rhodopsin proteins. Unless rhodopsin transforms light into a signal, and that signal is used by a signal transduction pathway to promote phototaxis, neither rhodopsins nor eyespots would have a function on their own.

"Rhodopsins themselves are complex. They are composed of two parts: opsin proteins, which are made of seven α-helices forming a circle, and retinal, which is a light-absorbing chromophore. Retinal is covalently linked to the opsins and horizontally positioned in the pocket inside the opsin tunnel. When a single photon hits retinal, a small conformational change is triggered in the opsin, and that triggers a cascade of several chemical reactions and biochemical transformations, ultimatively leading to sight.

"the following is required:

"A Schiff base, which is a chemical compound where carbon and nitrogen atoms are bound together by a double bond, involving four, instead of two electrons, binding retinal to a side chain of a lysine amino acid.

"A side chain of the amino acid Lys296 (lysine) where retinal covalently binds. Each of the seven transmembrane helices is composed of a specific number of amino acids. Bovine rhodopsin, for example, has 342 amino acids. The number 296 in Lys296 stands for the 296th amino acid in the chain. There is a pivotal role for the covalent bond between retinal and the lysine residue at position 296 in the activation pathway of rhodopsin.

"An essential amino acid residue called “counterion.” The counterion, a negatively charged amino acid residue that stabilizes a positive charge on the retinal, is crucial for rhodopsin to receive visible light.

"Unless all of these specific points are right from the beginning, rhodopsin will not be functional. A coordinated and finely tuned interplay and precise orchestration between opsin and retinal right from the start is thus indispensible.

"Hundreds of rhodopsins are embedded in the lipid bilayer of the membrane of Chlamydomonas, each using seven protein transmembrane domains, forming a pocket where retinal chromophores are inserted.

The precision with which opsins must fold into their seven-transmembrane configuration is staggering,

***

"E]ven as far back as the prokaryotes the complex seven transmembrane domain arrangement of opsin molecules seems to prevail without simpler photoreceptors existing concurrently. Darwin’s original puzzle over ocular evolution seems still to be with us but now at a molecular level.

"The precision with which opsins must fold into their seven-transmembrane configuration is staggering, as JILA (formerly the Joint Institute for Laboratory Astrophysics) reported:
Biophysicists at JILA have measured protein folding in more detail than ever before, revealing behavior that is surprisingly more complex than previously known….

"[T]he JILA team identified 14 intermediate states — seven times as many as previously observed — in just one part of bacteriorhodopsin, a protein in microbes that converts light to chemical energy and is widely studied in research.

“The increased complexity was stunning,” said project leader Tom Perkins, a National Institute of Standards and Technology (NIST) biophysicist… “Better instruments revealed all sorts of hidden dynamics that were obscured over the last 17 years when using conventional technology.”

“'If you miss most of the intermediate states, then you don’t really understand the system,” he said.

"Knowledge of protein folding is important because proteins must assume the correct 3-D structure to function properly. Misfolding may inactivate a protein or make it toxic. Several neurodegenerative and other diseases are attributed to incorrect folding of certain proteins."

comment: A highly complex system requiring so many precisely specific interacting parts can only be the result of design.

Evolution: reintroduction shows econiche importance

by David Turell @, Thursday, May 28, 2020, 20:01 (1638 days ago) @ David Turell

Same result. Wolves must be present as top predators:

https://phys.org/news/2020-05-reintroduction-wolves-tied-tall-willows.html

"The reintroduction of wolves into Yellowstone National Park is tied to the recovery of tall willows in the park, according to a new Oregon State University-led study.

"Wolves were reintroduced to the park in 1995. The new study shows their predation on elk is a major reason for an increase in the height of willows in northern Yellowstone, said Luke Painter, a wildlife ecologist at Oregon State University and lead author on the study.

***

"'Our results demonstrate that the reduction of elk browsing over the last two decades in northern Yellowstone has allowed willows to grow taller in many places, despite a warming and drying climate," Painter said, adding that willows aren't recovering in some areas due to continued browsing by increased numbers of bison.

***

"Painter and co-author Michael Tercek of Walking Shadow Ecology in Montana found a strong contrast between sites along streams compared to wet meadows. Willows in meadow sites did not increase in height, but willows in stream sites increased significantly, exceeding 200 centimeters, or 6 feet—a height accessible to elk—in the summers of 2001-04 and in the spring of 2016.

"They also found a significant change in willow thickets at least 200 centimeters in height along streams, with thickets occupying about 80% of willow patches in some sites, but as little as 22% in others. Tall willow thickets are an important habitat feature and an indicator of willow recovery, Painter said.

"Thus, passive restoration through the return of predators has begun to reverse the loss of willows, something active culling of elk in the past was unable to accomplish, he said.

"'Wolves didn't do it all by themselves," Painter said. "Other predators and hunters also affected elk, but this would not have happened without the wolves.

"'This does not mean a wider expanse of willow habitat has been restored as existed in the early days of the park when beavers created large wetland expanses. This may eventually happen as beavers return but could take a long time to develop."

"This is the latest OSU study led by Painter that examines the effects of wolf reintroduction to Yellowstone on trees. In 2018, he published a study that showed that aspen is recovering in areas around the park, as well as inside the park boundary."

Comment: Same view. Econiches are absolutely necessary for all of living organisms food supply. The vast diversity of the bush of life allows this to happen naturally, until humans step in to change things.

Evolution: origin of eukaryotes: Archaea preplanning

by David Turell @, Saturday, April 11, 2020, 17:42 (1685 days ago) @ David Turell

A new discovery in Archaea sows an early form of rhodopsin:

https://phys.org/news/2020-04-driven-proton-distant-relative.html

"Researchers investigated the group of microorganisms classified as Asgard archaea, and found a protein in their membrane which acts as a miniature light-activated pump. The schizorhodopsin protein draws protons into the organisms' body.

***

"...their team chose to study a feature of Asgard archaea that although not unique to them, is especially interesting in their case, and that is light-sensitive or photoreceptive proteins called rhodopsins. The organisms live at the bottom of oceans and lakes so it's surprising they need any kind of sensitivity to light.

"'We explored the molecular function of special rhodopsins in Asgard archaea called schizorhodopsins and found that they acted as light-activated microscopic pumps," explained Inoue. "Schizorhodopsin uses sunlight energy to take up a proton into the cell along a pathway inside the protein. Many prokaryotes such as bacteria and other archaea use rhodopsins to pump protons out, but we find this newly characterized form in Asgard archaea particularly interesting.'"

Comment: These ancient bugs are our direct ancestors. Why did they have precursors of the proteins our eyes use for vision? Easy answer: God knows full well how to evolve toward the future and pre-planned for real vision as it became necessary.

Evolution: origin of bats unknown

by David Turell @, Wednesday, April 22, 2020, 00:17 (1675 days ago) @ David Turell

We've figured out whales series and turtles are being uncovered, but the source ob bats so far is a dead end:

https://www.smithsonianmag.com/science-nature/bats-evolution-history-180974610/?utm_sou...

"...bats are the only mammals to have evolved powered flight, and they’ve been flapping around for tens of millions of years. Where, then, did these flying oddities come from?

***


"There are some differences between the oldest bats and their modern relatives. Based upon the ear anatomy of the better-preserved specimens, for example, scientists know that the first bats couldn’t echolocate. They relied on sight, smell and touch to find their meals. While modern bats have a claw only on the equivalent of our thumb, earlier bats kept some of the additional finger claws inherited from their ancestors. A fossil bat dating to about 52 million years ago, dubbed Onychonycteris finneryi in 2008, had claws on all five of its fingers. New technology has added a few details to the early bat story, too. A recent study of coloration in the fossil record found that two 48 million-year-old bats found in Germany were mostly brown.

***

"The bats that modern scientists know best lived in places where rapid and delicate preservation entombed the tiny mammals. Some of the bones of Icaronycteris index, one of the earliest known bats and a neighbor of Onychonycteris, are as thin as a human hair. The only reason we know about these bats is that they lived around lakes that favored exceptional preservation; the fine sediment and oxygen-depleted water on the lake bottoms allowed fossils to be buried quickly in an environment scavengers and other decomposers couldn’t reach.

***

"Refining our sense of what an early proto-bat might look like is also essential. The current record doesn’t offer many hints. Consider Onychonycteris, one of the oldest known bats featuring some of the most complete remains. While this mammal has more primitive limb proportions and claws on its fingers, says Royal Ontario Museum paleontologist Kevin Seymour, “it is still a bat.” The closest paleontologists can get to understanding this animal is looking at living mouse-tailed bats, Seymour notes, which use a combination of fluttering and gliding to move through the air.

"What came before is only speculative. Bats are mammals, and so the earliest bats were certainly furry. Based on finds such as Onychonycteris, it’s reasonable to propose that bats went through a gliding stage before powered flight, Seymour says, and the first bats probably were insectivores. But that’s about all scientists can say with confidence without a relatively complete fossil to fill in the gap “It will certainly require articulated material,” Seymour says, relatively complete fossils acting as keystones to the tiny fossils of Paleocene and Eocene mammals that may already be resting in museums drawers.

"While experts search for the relevant fossils, other mammals may offer a rough guide of what to expect. Bats may be the only mammals to evolve powered flapping flight, but other mammal species from flying squirrels to a lemur-like creature called the colugo can glide through the air on expanded membranes. The earliest bats probably evolved along a similar route, with some extra skin allowing them to move from tree to tree."

Comment: Probably came from gliding animals, but didn't require the changes whales had to have created. Whals stil defy reasonable Darwinian survival explanations.

Evolution: origin of eukaryotes: Archaea preplanning

by David Turell @, Wednesday, August 26, 2020, 19:43 (1548 days ago) @ David Turell

Theoretical fusion of Archaea and Bacteria to create an organism that survives without oxygen:

https://phys.org/news/2020-08-genes-chlamydiae-complex-life-oxygen.html

"Life on Earth can be classified into two main categories: eukaryotes (e.g., plants, animals, fungi, amoeba) and prokaryotes (e.g., bacteria and archaea). In comparison to relatively simple prokaryotic cells, eukaryotic cells have complex cellular organization. How such cellular complexity evolved has puzzled scientists for decades. The prevailing hypothesis for the evolution of eukaryotes involves the merger, or symbiosis, of two prokaryotes—an archaeon and a bacterium—nearly two-billion years ago, in environments with little oxygen. Scientists assume that these microbes co-operated with each other to survive without oxygen by exchanging nutrients. While we do not know what these nutrient were, many scientists think that hydrogen might be the answer.

'To find an answer to this two-billion year old mystery, scientists look at genomes of modern prokaryotes and eukaryotes to find genes for living without oxygen and nutrient metabolism with hydrogen. Much like fossils, genomes hold clues to the evolutionary history of their ancestors. In our cells, we have a specialized factory called the mitochondrion—or powerhouse of the cell—that helps us make energy using the oxygen we breathe and the sugar we eat. However, some mitochondria are able to make energy without oxygen by producing hydrogen gas. Since hydrogen has been proposed to have been an important nutrient for the origin of eukaryotes, scientists think that hydrogen production was present in one of the two-billion year old partners: the archaeon or the bacterium. However, there is no evidence for this with present data.

"In an article published in Science Advances, a team of international researchers has discovered an unexpected source of these genes at the bottom of the ocean from the Anoxychlamydiales, a newly discovered group of Chlamydiae. Anoxychlamydiales live without oxygen, and have genes for producing hydrogen—a trait that has never before been identified in Chlamydiae. The researchers were surprised to find that the chlamydial genes for hydrogen production closely resembled those found in eukaryotes. This strongly suggests that ancient chlamydiae contributed these genes during the evolution of eukaryotes.

***

"Finding chlamydiae that can live without oxygen has important implications in itself. These bacteria are typically known as pathogens of humans and other animals, even though they can also infect single-cell eukaryotes such as amoeba. All chlamydiae known to date live inside eukaryotic cells.

"'Finding chlamydiae that might be able to live without oxygen, produce hydrogen, and live outside a eukaryote challenges our previously held conceptions," says Jennah Dharamshi. "Our findings suggest that chlamydiae may be important members of the ecosystem on the ocean floor and that perhaps all chlamydiae are not that bad after all.'"

Comment: This unusual finding supports my concept of God's pre-planning for advances.

Evolution: driven by extinctions

by David Turell @, Saturday, October 17, 2020, 21:04 (1496 days ago) @ David Turell

There seems to be no question about this in Chixculub for dinos and now in the P-T largest extinction ever:

https://www.sciencedaily.com/releases/2020/10/201016114927.htm

"The Permian-Triassic mass extinction killed as much as 95 per cent of life, and the very few survivors faced a turbulent world, repeatedly hit by global warming and ocean acidification crises. Two main groups of tetrapods survived, the synapsids and archosaurs, including ancestors of mammals and birds respectively.

***

"But a strong hint for this sudden origin of warm-bloodedness in both synapsids and archosaurs at exactly the time of the Permian-Triassic mass extinction was found in 2009. Tai Kubo, then a student studying the Masters in Palaeobiology degree at Bristol and Professor Benton identified that all medium-sized and large tetrapods switched from sprawling to erect posture right at the Permian-Triassic boundary.

"Their study was based on fossilised footprints. They looked at a sample of hundreds of fossil trackways, and Kubo and Benton were surprised to see the posture shift happened instantly, not strung out over tens of millions of years, as had been suggested. It also happened in all groups, not just the mammal ancestors or bird ancestors.

***

"'Birds and mammals have erect postures, with the limbs immediately below their bodies. This allows them to run faster, and especially further. There are great advantages in erect posture and warm-bloodedness, but the cost is that endotherms have to eat much more than cold-blooded animals just to fuel their inner temperature control."

"The evidence from posture change and from early origin of hair and feathers, all happening at the same time, suggested this was the beginning of a kind of 'arms race'. In ecology, arms races occur when predators and prey have to compete with each other, and where there may be an escalation of adaptations. The lion evolves to run faster, but the wildebeest also evolves to run faster or twist and turn to escape.

"Something like this happened in the Triassic, from 250 to 200 million years ago. Today, warm-blooded animals can live all over the Earth, even in cold areas, and they remain active at night. They also show intensive parental care, feeding their babies and teaching them complex and smart behaviour. These adaptations gave birds and mammals the edge over amphibians and reptiles and in the present cool world allowed them to dominate in more parts of the world.

"Professor Benton added: "The Triassic was a remarkable time in the history of life on Earth. You see birds and mammals everywhere on land today, whereas amphibians and reptiles are often quite hidden.

"'This revolution in ecosystems was triggered by the independent origins of endothermy in birds and mammals, but until recently we didn't realise that these two events might have been coordinated."

Comment: Seems quite clear. Of course, we can wonder how God handled this. Did He set up the extinction, or did it happen naturally and He used it to advance evolution? Either or! Note the relationship to the discussion about the size of the food-supplying living bush and the need for calories caused by becoming warm-blooded.

Evolution: driven by extinctions; the Permian

by David Turell @, Tuesday, November 10, 2020, 19:26 (1472 days ago) @ David Turell

More proof of the volcanism cause from the Siberian traps:

https://phys.org/news/2020-11-large-volcanic-eruption-largest-mass.html

"There have been five mass extinctions since the divergent evolution of early animals 450—600 million years ago. The third was the largest one and is thought to have been triggered by the eruption of the Siberian Traps—a large region of volcanic rock known as a large igneous province. But the correlation between the eruption and mass extinction has not yet been clarified.

"Sedimentary mercury enrichments, proxies for massive volcanic events, have been detected in dozens of sedimentary rocks from the end of the Permian. These rocks have been found deposited inland, in shallow seas and central oceans, but uncertainty remains as to their interpretation. Mercury can be sourced from either direct atmospheric deposition from volcanic emissions and riverine inputs from terrestrial organic matter oxidation when land/plant devastation—referred to as terrestrial ecological disturbance—occurs.

"The largest mass extinction occurred at the end of the Permian—roughly 252 million years ago. This mass extinction was marked by the transition from the divergence of the Paleozoic reptiles and marine animals like brachiopods and trilobites to Mesozoic dinosaurs and marine animals such as mollusks. Approximately 90% of species disappeared at the end of the Permian.

"Current professor emeritus at Tohoku University, Kunio Kaiho led a team that looked into possible triggers of the largest mass extinction. They took sedimentary rock samples from two places—southern China and Italy—and analyzed the organic molecules and mercury (Hg) in them. They found two discrete coronene-Hg enrichments coinciding with the first terrestrial ecological disturbance and the following mass extinction in both areas.

"'We believe this to be the product of large volcanic eruptions because the coronene anomaly was formed by abnormally high temperature combustion," says professor Kaiho. "High temperature magma or asteroid/comet impacts can make such a coronene enrichment.

***

"Coronene is a highly condensed six-ring polycyclic aromatic hydrocarbon, which requires significantly higher energy to form as compared to smaller PAHs. Therefore, high temperature volcanic combustion can cause the coronene enrichments. This means that high temperature combustion of hydrocarbons in the sedimentary rocks by lateral intrusion of magmas formed CO2 and CH4 causing high pressure and eruption to induce global warming and the mass extinction. The coronene-mercury concentration firstly evidenced that volcanic hydrocarbon combustion helped contribute to the extinction through global warming."

Comment: Just further proof of an existing theory:

Evolution: driven by extinctions; the Permian

by David Turell @, Tuesday, January 10, 2023, 23:41 (681 days ago) @ David Turell

An alternate theory involving UV-B radiation:

https://www.livescience.com/uv-radiation-fossilized-pollen?utm_term=C3CFD69C-A485-4C10-...

"Pollen that dates to the time of the Permian-Triassic mass extinction event, roughly 250 million years ago, produced "sunscreen" compounds that shielded against harmful UV-B radiation, the analysis found. At that time, approximately 80% of all marine and terrestrial species died off.

***

"Plants rely on photosynthesis to convert sunlight into energy, but they also need a mechanism to block out harmful UV-B radiation.

"'As UV-B is bad for us, it's equally as bad for plants," Barry Lomax(opens in new tab), the study's co-author and a professor in plant paleobiology at the University of Nottingham in the U.K., told Live Science. "Instead of going to [the pharmacy], plants can alter their chemistry and make their own equivalent version of sunscreen compounds. Their chemical structure acts to dissipate the high-energy wavelengths of UV-B light and stops it from getting within the preserved tissues of the pollen grains."

***

"In this case, the radiation spike didn't "kill the plants outright, but rather it slowed them down by lessening their ability to photosynthesize, which caused them to become sterile over time," Lomax said. "You then wind up with extinction driven by a lack of sexual reproduction rather than the UV-B frying the plants instantly."

"Experts have long theorized that the Permian-Triassic extinction, classified as one of the five major extinction events on Earth, was in response to a "paleoclimate emergency" caused by the Siberian Traps eruption, a large volcanic event in what is now modern-day Siberia. The catastrophic incident forced plumes of carbon buried deep within the Earth's interior up into the stratosphere, resulting in a global warming event that "led to a collapse in the Earth's ozone layer," according to the researchers.

"'And when you thin out the ozone layer, that's when you end up with more UV-Bs," Lomax said.

"'In their research, the scientists also discovered a link between the burst of UV-B radiation and how it changed the chemistry of plants' tissues, which led to "a loss of insect diversity," Lomax said.

"'In this case, plant tissues became less palatable to herbivores and less digestible," Lomax said.

"Because plant leaves had less nitrogen, they were not nutritious enough for the insects that ate them. That may explain why insect populations plummeted during this extinction event.

"'Often insects come out unscathed during mass extinction events, but that wasn't the case here," Lomax said.

Comment: it seems volcanic activity set off a chain of other related events to make the mass extinction one of the greatest. Does God do this as part of His designed controls or does this naturally happen and God responds by designing new forms? Either scenario is plausible. The events with less 'God-control' do not imply God is less than all-powerful. He has full ability to design around or out of such an event. Therefore, for me He allows such events, s hey wom't stop hi m from achieving his goal, humans.

Evolution: driven by extinctions: Chixculub luck or aimed

by David Turell @, Thursday, April 22, 2021, 15:06 (1309 days ago) @ David Turell

Gerald Schroeder first raised the issue, luck or God's aim, now discussed again by SEAN B. CARROLL:

https://nautil.us/issue/99/universality/the-mother-of-all-accidents?mc_cid=f22b7ca090&a...

"The Cretaceous-Paleogene boundary (known as the K-Pg for short; formerly known as the K-T) marks not only the extinction of dinosaurs, pterosaurs, mosasaurs, and ammonites, but the mass extinction of about three-quarters of all species living around the globe 66 million years ago. Alvarez, Smit, and their colleagues wondered: What on earth could have caused the disappearance of widespread, tiny organisms like forams, as well as much larger creatures?

"The short answer, as you most likely have heard, is that it wasn’t something on Earth, but something from space.

"Chemical analyses of the clay marking the boundary of the two periods, carried out by Alvarez, Smit, and their collaborators, revealed that it contained extraordinary levels of the element iridium, a material rare on Earth but more abundant in certain kinds of asteroids.

"From the amount of iridium found in the boundary layer, Walter Alvarez’s father Luis Alvarez, a Manhattan Project veteran and Nobel Prize-winning physicist, calculated the size of an asteroid that would be necessary to coat the globe in iridium. He figured that the asteroid would have been about 6 miles (or 10 kilometers) wide.

***

"Alvarez, Smit, and their collaborators forwarded the asteroid impact scenario for the mass extinction in 1980. It was a revolutionary, many would say radical, and some would say too radical, idea.

"Finally, in 1991, a 100-mile wide crater was identified that lies partly underneath the village of Chicxulub on Mexico’s Yucatan Peninsula, and was shown to be of the very same age as the K-Pg boundary. The smoking hole had been found.

"Since the discovery of the Chicxulub crater, many kinds of scientists—geologists, paleontologists, ecologists, climatologists—have worked to unravel how the K-Pg impact triggered a mass extinction and to understand which species perished, which survived, and why?

"The important question for us though is: Would we be here without the asteroid collision?

"To answer that question, we need to weigh a few facts. First, mammals evolved well before the K-Pg extinction. They had coexisted alongside the great dinosaurs for 100 million years, and scores of species are known from various parts of the world from the late Cretaceous period. So, the presence of dinosaurs did not preclude furry mammals from arising. But second, mammals were relatively small-bodied, suggesting that they filled niches that the dominant dinosaurs did not. And third, within just a few hundred thousand years after dinosaurs disappeared, mammals became much larger than at any time in the previous 100 million years. This very rapid increase in average and maximum body size post-extinction suggests that the dinosaurs were a major force in limiting their size. It stands to reason, then, that without the asteroid impact the dinosaurs that had reigned for more than 100 million years would likely still be here, and therefore the primates would not be, and so neither would we.

***

"It turns out that no other asteroid strikes of the magnitude of the Chicxulub impact have occurred in the last 500 million years on Earth or the moon (which receives a similar population of incoming bodies). To trigger a mass extinction, size matters. With an incidence of just one, all we can say is that Chicxulub is perhaps a 1 in 500 million years (or longer) event.

"Moreover, it turns out that, even with a large asteroid, the location of the impact also matters. The rocks around the Yucatan target site are rich in hydrocarbons and sulfur, which resulted in the production of enormous quantities of soot and sunlight-deflecting aerosols. Geologists figure that as little as 1 to 13 percent of the Earth’s surface contains rocks that could have yielded a comparable stew of destructive materials.

"This small target means that with the Earth rotating at about 1,000 miles per hour, had the asteroid arrived just 30 minutes sooner, it would have landed in the Atlantic Ocean; 30 minutes later, in the Pacific Ocean. Just 30 minutes either way and the dinosaurs would probably be here, and there would be no Ted and, God forbid, no Ted 2."

Comment: We are here. Luck or God's aim? It depends upon whether you are a theist or a materialist/naturalist.

Evolution: driven by extinctions: too much phosphorus

by David Turell @, Monday, December 06, 2021, 19:29 (1081 days ago) @ David Turell

From volcanic activity:

https://www.sciencedaily.com/releases/2021/12/211202113215.htm

"Scientists have discovered that two intense spells of volcanic activity triggered a period of global cooling and falling oxygen levels in the oceans, which caused one of the most severe mass extinctions in Earth history - the 'Late Ordovician Mass Extinction', 450 million years ago.

***

"This period brought about intense planetary cooling, which culminated in a glaciation and the major 'Late Ordovician Mass Extinction'. This extinction led to the loss of about 85% of species dwelling in the oceans, reshaping the course of evolution of life on Earth.

***

"The team identified that two exceptionally large pulses of volcanic activity across the globe, occurring in parts of present-day North America and South China, coincided very closely with the two peaks in glaciation and extinction. "But intense bursts of volcanism are more typically linked to massive CO2 release, which should drive global warming, so another process must be responsible for sudden cooling events," explains Dr Gernon.

"This prompted the team to consider whether a secondary process -- natural breakdown or 'weathering' of the volcanic material -- may have provided the surge in phosphorus need to explain the glaciations.

"'When volcanic material is deposited in the oceans it undergoes rapid and profound chemical alteration, including release of phosphorus, effectively fertilizing the oceans," states co-author Professor Martin Palmer from the University of Southampton. "So, it is seemed viable hypothesis and certainly one worth testing."

"This prompted the team to consider whether a secondary process -- natural breakdown or 'weathering' of the volcanic material -- may have provided the surge in phosphorus need to explain the glaciations.

***

"'This prompted us to develop a global biogeochemical model to understand the knock-on effects on the carbon cycle of rapidly adding a surge of phosphorus leached from volcanic deposits into the ocean," says Dr Benjamin Mills, Associate Professor at the University of Leeds and co-author on the study.

"The team discovered that widespread blankets of volcanic material laid down on the seafloor during the Ordovician Period would have released sufficient phosphorus into the ocean to drive a chain of events, including climatic cooling, glaciation, widespread reduction in ocean oxygen levels, and mass extinction.

"Whilst it might be tempting to think that seeding the oceans with phosphorus may help solve the current climate crisis, the scientists caution that this may have more damaging consequences. "Excess nutrient runoff from sources like agricultural fertilisers is a major cause of marine eutrophication -- where algae grow rapidly and then decay, consuming oxygen and causing substantial damage to ecosystems at the present day," cautions Dr Mills."

Comment: Life and inorganic systems are intertwined as this study shows. Changes in the amount of living matter can alter the climate and cause extinctions which change the course of evolution. These systems are in a delicate balance, without which we wouldn't be here. The huge bush of life is simply a part of those required systems, something dhw doesn't understand when he asks why God didn't simply produce humans instead of all that really happened.

Evolution: driven by extinctions: Chixculub in the Spring

by David Turell @, Saturday, December 11, 2021, 20:02 (1076 days ago) @ David Turell

Timed by new research, still 66 mya:

https://phys.org/news/2021-12-chicxulub-asteroid-impact.html

"A groundbreaking study led by researchers at Florida Atlantic University and an international team of scientists conclusively confirms the time year of the catastrophic Chicxulub asteroid, responsible for the extinction of dinosaurs and 75 percent of life on Earth 66 million years ago. Springtime, the season of new beginnings, ended the 165-million-year reign of dinosaurs and changed the course of evolution on Earth.

***

"'Time of year plays an important role in many biological functions such as reproduction, feeding strategies, host-parasite interactions, seasonal dormancy, and breeding patterns," said DePalma. "Hence, it is no surprise that the time of year for a global-scale hazard can play a big role in how harshly it impacts life. The seasonal timing of the Chicxulub impact has therefore been a critical question for the story of the end-Cretaceous extinction. Until now, the answer to that question has remained unclear."

***

"The unique structure and pattern of the growth lines in fossil fish bones from the site, similar to a barcode, showed that all of the examined fish died during the spring-summer growth phase. High-tech isotopic analysis of the growth lines provided independent confirmation of this, showing a yearly oscillation that also terminated during the spring-summer growth.

***

"Comparing the sizes of the youngest fish to modern growth rates enabled the team to predict how long after hatching the fish were buried. Comparing this to known modern spawning seasons enabled them to deduce what seasonal range was represented by the deposit at Tanis—spring to summer, just as indicated by the bones."

Comment: it is clear that God, if involved, picked the perfect time.

Evolution: driven by extinctions: Chixculub in the Spring

by David Turell @, Wednesday, February 23, 2022, 16:44 (1002 days ago) @ David Turell

Further research confirms:

https://phys.org/news/2022-02-dinosaurs.html

"When the meteorite impacted Earth, it rocked the continental plate and caused huge waves in water bodies, such as rivers and lakes. These waves moved enormous volumes of sediment that engulfed fish and buried them alive, while impact spherules (glass beads of Earth rock) rained down from the sky, less than an hour after impact. Today, the event deposit of Tanis in North Dakota preserves a fossilized ecosystem that includes paddlefishes and sturgeons, which were direct casualties of the event.

"The fossil fishes were exceptionally preserved, with their bones showing almost no signs of geochemical alteration. Melanie During, researcher from Uppsala University and the VU Amsterdam and lead author of the publication, went onsite to excavate the precious specimens: "It was obvious to us that we needed to analyze these bones to get valuable information about the moment of the impact," she explains.

"The team came to the ESRF, a particle accelerator that produces the world's brightest X-rays, with a partial fish specimen and representative sections of the bones and carried out high-resolution synchrotron X-ray tomography.

"The ESRF is the perfect tool to research these kinds of samples and the facility has developed unique expertise in paleontology over the last two decades. "Thanks to the ESRF's data, we found that the bones registered seasonal growth, very much like trees do, growing a new layer every year on the outside of the bone," explains Sophie Sanchez of Uppsala University, and visiting scientist at the ESRF.

***

"The findings will aid future research into the selectivity of the mass extinction: In the Northern Hemisphere, it was spring and therefore the reproduction cycles of organisms were starting, only to be abruptly stopped. Meanwhile, it was autumn in the Southern Hemisphere, where many organisms were likely preparing for winter. In general, it is well understood that organisms who were exposed died virtually immediately. So those sheltering in caves or burrows because they were hibernating were far more likely to survive into the Paleogene. "Our results will help to uncover why most of the dinosaurs died out while birds and early mammals managed to evade extinction," concludes During."

Comment: this is mainly a repeat of the previous study. I guess new info is added. The amazing point is how much clever humans can invent to study the deep past.

Evolution: origin of eukaryotes: nucleus from a virus?

by David Turell @, Wednesday, November 25, 2020, 22:55 (1457 days ago) @ David Turell

Like the addition of the mitochondria:

https://www.quantamagazine.org/did-viruses-create-the-nucleus-the-answer-may-be-near-20...

"Different as the cells from animals, plants, fungi and protozoa can be, they all share one prominent feature: a nucleus. They have other organelles, too, like the energy-producing mitochondria, but the presence of a nucleus — a well-defined porous pouch full of genetic material — is what inspired the biologist Édouard Chatton in 1925 to coin the term eukaryotes, which referred to living things with a “true kernel.” All the rest he labeled prokaryotes, for life “before kernel.” This dichotomy between nucleated and nonnucleated life became fundamental to biology.

"No one knows exactly how the nucleus evolved and created that division. Growing evidence has persuaded some researchers, however, that the nucleus might have arisen through a symbiotic partnership much like the one believed to have produced mitochondria. A crucial difference, though, is that the partner responsible for the nucleus might not have been a cell at all, but a virus.

***

"Scientists generally think eukaryotes first came on the scene between 2.5 billion and 1.5 billion years ago, when evidence suggests that a bacterium took up residence inside a different kind of prokaryote, an archaeon, and became its mitochondrion. But a deeper mystery surrounds the emergence of the nucleus; no one even knows whether that ancient archaeon was already a kind of proto-eukaryote with a nucleus, or whether the nucleus came later.

"Any origin story for the eukaryotic nucleus needs to explain several of its features. There’s the nature of the structure, for starters: its nested inner and outer membranes, and the pores that connect its interior to the rest of the cell. There’s also the curious way it compartmentalizes the expression of genes within itself but leaves the construction of proteins outside. And a truly persuasive origin story must also explain why the nucleus exists at all — what evolutionary pressures pushed those ancient cells to wall up their genomes.

***

"...scientists cited recent discoveries involving an extraordinary group of “giant viruses” as one of the main reasons for the updates. These viruses were totally unknown when Takemura and Bell published their initial hypotheses. Their genomes, which have more than 1 million base pairs, rival those of small, free-living bacteria in size, and they carry viral versions of genes for proteins involved in essential processes in cells. (There’s some evidence that the eukaryotic versions of several of these proteins came from these viruses.)

"But most importantly, these giant viruses replicate inside complex, self-constructed compartments in a host cell’s cytoplasm, which is why these viruses, like poxviruses, are classified as nucleocytoplasmic large DNA viruses (NCLDVs). For these giant viruses, the compartments they make are “viral factories which are as big as a eukaryotic nucleus,” said Patrick Forterre, an evolutionary biologist at the Pasteur Institute in Paris. Tellingly, the viral factories made by NCLDVs that infect eukaryotes also have inner and outer membranes like the nucleus. Giant viruses are what Forterre, Takemura and Bell say are responsible for the origin of the nucleus.

***

"Until that kind of extraordinary evidence is in hand, viral eukaryogenesis will likely remain controversial. But even if it doesn’t end up winning the battle for acceptance, every test of the theory reveals bits and pieces of our evolutionary past — and because of that, we’re getting closer and closer to learning the truth about where we came from."

Comment: I've skipped over a review of the battle. It is not settled, but the mitochondria are described as happening in a similar way.

Evolution: fish to land animals transition

by David Turell @, Wednesday, November 25, 2020, 23:34 (1457 days ago) @ David Turell

Just the opposite to whales, but it was prior in evolution since all life started in water:

https://phys.org/news/2020-11-water-to-land-transition-early-tetrapods.html

"The water-to-land transition is one of the most important and inspiring major transitions in vertebrate evolution. And the question of how and when tetrapods transitioned from water to land has long been a source of wonder and scientific debate.

***

'A paper published November 25 in Nature addresses these questions using high-resolution fossil data and shows that although these early tetrapods were still tied to water and had aquatic features, they also had adaptations that indicate some ability to move on land. Although, they may not have been very good at doing it, at least by today's standards.

***

"The researchers chose the humerus bone because it is not only abundant and well preserved in the fossil record, but it is also present in all sarcopterygians—a group of animals which includes coelacanth fish, lungfish, and all tetrapods, including all of their fossil representatives. "We expected the humerus would carry a strong functional signal as the animals transitioned from being a fully functional fish to being fully terrestrial tetrapods, and that we could use that to predict when tetrapods started to move on land," said Pierce. "We found that terrestrial ability appears to coincide with the origin of limbs, which is really exciting."

"[A group of researchers] examined 40 three-dimensional models of fossil humeri (upper arm bone) from extinct animals that bridge the water-to-land transition.

"'Because the fossil record of the transition to land in tetrapods is so poor we went to a source of fossils that could better represent the entirety of the transition all the way from being a completely aquatic fish to a fully terrestrial tetrapod," said Dickson.

***

"The researchers chose the humerus bone because it is not only abundant and well preserved in the fossil record, but it is also present in all sarcopterygians—a group of animals which includes coelacanth fish, lungfish, and all tetrapods, including all of their fossil representatives. "We expected the humerus would carry a strong functional signal as the animals transitioned from being a fully functional fish to being fully terrestrial tetrapods, and that we could use that to predict when tetrapods started to move on land," said Pierce. "We found that terrestrial ability appears to coincide with the origin of limbs, which is really exciting."

***

"'We started to think about what functional traits would be important to glean from the humerus," said Dickson. "Which wasn't an easy task as fish fins are very different from tetrapod limbs." In the end, they narrowed their focus on six traits that could be reliably measured on all of the fossils including simple measurements like the relative length of the bone as a proxy for stride length and more sophisticated analyses that simulated mechanical stress under different weight bearing scenarios to estimate humerus strength.

"'If you have an equal representation of all the functional traits you can map out how the performance changes as you go from one adaptive peak to another," Dickson explained. Using computational optimization the team was able to reveal the exact combination of functional traits that maximized performance for aquatic fish, terrestrial tetrapods, and the earliest tetrapods. Their results showed that the earliest tetrapods had a unique combination of functional traits, but did not conform to their own adaptive peak.

"'What we found was that the humeri of the earliest tetrapods clustered at the base of the terrestrial landscape," said Pierce. "indicating increasing performance for moving on land. But these animals had only evolved a limited set of functional traits for effective terrestrial walking."

"The researchers suggest that the ability to move on land may have been limited due to selection on other traits, like feeding in water, that tied early tetrapods to their ancestral aquatic habitat. Once tetrapods broke free of this constraint, the humerus was free to evolve morphologies and functions that enhanced limb-based locomotion and the eventual invasion of terrestrial ecosystems

"'Our study provides the first quantitative, high-resolution insight into the evolution of terrestrial locomotion across the water-land transition," said Dickson. "It also provides a prediction of when and how [the transition] happened and what functions were important in the transition, at least in the humerus.'"

Comment: I admire these folks persevering across a big gap with no little steps to follow. By using computer simulations they could model a transition, but that doesn't tell us the underlying cause or causes.

Evolution: fish to land animals transition

by dhw, Thursday, November 26, 2020, 10:47 (1456 days ago) @ David Turell

QUOTE: "We expected the humerus would carry a strong functional signal as the animals transitioned from being a fully functional fish to being fully terrestrial tetrapods, and that we could use that to predict when tetrapods started to move on land," said Pierce. "We found that terrestrial ability appears to coincide with the origin of limbs, which is really exciting."

DAVID: I admire these folks persevering across a big gap with no little steps to follow. By using computer simulations they could model a transition, but that doesn't tell us the underlying cause or causes.

How about this? Terrestrial ability on land coincided with the origin of limbs, just as marine ability coincided with the reversion of limbs to fins, when the cell communities adapted their structures in order to cope with their new environment. Evolution is the history of cells combining and cooperating to find new ways of improving their chances of survival by adapting to or exploiting new conditions.

Evolution: fish to land animals transition

by David Turell @, Thursday, November 26, 2020, 16:00 (1456 days ago) @ dhw

QUOTE: "We expected the humerus would carry a strong functional signal as the animals transitioned from being a fully functional fish to being fully terrestrial tetrapods, and that we could use that to predict when tetrapods started to move on land," said Pierce. "We found that terrestrial ability appears to coincide with the origin of limbs, which is really exciting."

DAVID: I admire these folks persevering across a big gap with no little steps to follow. By using computer simulations they could model a transition, but that doesn't tell us the underlying cause or causes.

dhw: How about this? Terrestrial ability on land coincided with the origin of limbs, just as marine ability coincided with the reversion of limbs to fins, when the cell communities adapted their structures in order to cope with their new environment. Evolution is the history of cells combining and cooperating to find new ways of improving their chances of survival by adapting to or exploiting new conditions.

No explanation of the huge gaps in design from step to new step. Your answer is designing cells, and I ask who taught them how to design such complexity? Magical cells or more logically a designing mind.

Evolution: fish to land animals transition

by dhw, Friday, November 27, 2020, 11:23 (1455 days ago) @ David Turell

QUOTE: "We expected the humerus would carry a strong functional signal as the animals transitioned from being a fully functional fish to being fully terrestrial tetrapods, and that we could use that to predict when tetrapods started to move on land," said Pierce. "We found that terrestrial ability appears to coincide with the origin of limbs, which is really exciting."

DAVID: I admire these folks persevering across a big gap with no little steps to follow. By using computer simulations they could model a transition, but that doesn't tell us the underlying cause or causes.

dhw: How about this? Terrestrial ability on land coincided with the origin of limbs, just as marine ability coincided with the reversion of limbs to fins, when the cell communities adapted their structures in order to cope with their new environment. Evolution is the history of cells combining and cooperating to find new ways of improving their chances of survival by adapting to or exploiting new conditions.

DAVID: No explanation of the huge gaps in design from step to new step. Your answer is designing cells, and I ask who taught them how to design such complexity? Magical cells or more logically a designing mind.

Oops, I forgot to mention that if God exists, he would have designed the intelligent cell. May I take it you will now acknowledge the feasibility of this theory?

Evolution: fish to land animals transition

by David Turell @, Friday, November 27, 2020, 18:26 (1455 days ago) @ dhw

QUOTE: "We expected the humerus would carry a strong functional signal as the animals transitioned from being a fully functional fish to being fully terrestrial tetrapods, and that we could use that to predict when tetrapods started to move on land," said Pierce. "We found that terrestrial ability appears to coincide with the origin of limbs, which is really exciting."

DAVID: I admire these folks persevering across a big gap with no little steps to follow. By using computer simulations they could model a transition, but that doesn't tell us the underlying cause or causes.

dhw: How about this? Terrestrial ability on land coincided with the origin of limbs, just as marine ability coincided with the reversion of limbs to fins, when the cell communities adapted their structures in order to cope with their new environment. Evolution is the history of cells combining and cooperating to find new ways of improving their chances of survival by adapting to or exploiting new conditions.

DAVID: No explanation of the huge gaps in design from step to new step. Your answer is designing cells, and I ask who taught them how to design such complexity? Magical cells or more logically a designing mind.

dhw: Oops, I forgot to mention that if God exists, he would have designed the intelligent cell. May I take it you will now acknowledge the feasibility of this theory?

Oops. My God doesn't do second-hand designs. Explaining all the requirements for new designs to individual cells is too complex rather than just doing the designs directly. Note today's entry about product controls designed by god.

Evolution: fish to land animals transition

by David Turell @, Saturday, November 28, 2020, 00:14 (1455 days ago) @ dhw

QUOTE: "We expected the humerus would carry a strong functional signal as the animals transitioned from being a fully functional fish to being fully terrestrial tetrapods, and that we could use that to predict when tetrapods started to move on land," said Pierce. "We found that terrestrial ability appears to coincide with the origin of limbs, which is really exciting."

DAVID: I admire these folks persevering across a big gap with no little steps to follow. By using computer simulations they could model a transition, but that doesn't tell us the underlying cause or causes.

dhw: How about this? Terrestrial ability on land coincided with the origin of limbs, just as marine ability coincided with the reversion of limbs to fins, when the cell communities adapted their structures in order to cope with their new environment. Evolution is the history of cells combining and cooperating to find new ways of improving their chances of survival by adapting to or exploiting new conditions.

DAVID: No explanation of the huge gaps in design from step to new step. Your answer is designing cells, and I ask who taught them how to design such complexity? Magical cells or more logically a designing mind.

dhw: Oops, I forgot to mention that if God exists, he would have designed the intelligent cell. May I take it you will now acknowledge the feasibility of this theory?

Absolutely not. God is not going to have designs made by second-hand methods. The intricacies of the biochemistry of life and of the physiology and mechanics of living forms is so complex only direct design will suffice. I don't know why you keep trying in your adopted quasi-theistic state attempt to move God to the back burner for the creation of life and the design of evolution. Who created the universe? Didn't God do it first hand with no intermediates? He created life all by Himself. Why your need for distancing Him in living designs? Trying to diminish His controls or His importance? Your so-called intelligent cells, without brains, would need a universe-sized instruction book to follow to mimic God's abilities in new design. In all design work it is easier to do it yourself than parcel it out, although when over-whelmed co-equal designers help out at the human level. Please keep God at His level as you attempt to create theosophies at His level.

Evolution: fish to land animals transition

by dhw, Saturday, November 28, 2020, 11:02 (1454 days ago) @ David Turell

dhw: How about this? Terrestrial ability on land coincided with the origin of limbs, just as marine ability coincided with the reversion of limbs to fins, when the cell communities adapted their structures in order to cope with their new environment. Evolution is the history of cells combining and cooperating to find new ways of improving their chances of survival by adapting to or exploiting new conditions.

DAVID: No explanation of the huge gaps in design from step to new step. Your answer is designing cells, and I ask who taught them how to design such complexity? Magical cells or more logically a designing mind.

dhw: Oops, I forgot to mention that if God exists, he would have designed the intelligent cell.

DAVID: Oops. My God doesn't do second-hand designs. Explaining all the requirements for new designs to individual cells is too complex rather than just doing the designs directly. Note today's entry about product controls designed by god.

Funny, I can’t find a single mention of God in the article. I did find this, though:

QUOTE: A paradigm shift occurred in the field of translation when it was discovered that cells use the translation machinery itself to detect errors and activate quality control mechanisms.

Cells seem to know what they’re doing, don’t they?

dhw: May I take it you will now acknowledge the feasibility of this theory?

DAVID: Absolutely not. God is not going to have designs made by second-hand methods. The intricacies of the biochemistry of life and of the physiology and mechanics of living forms is so complex only direct design will suffice. I don't know why you keep trying in your adopted quasi-theistic state attempt to move God to the back burner for the creation of life and the design of evolution.

I do not! I keep reiterating that if God exists, he is the creator of life and the designer of evolution! But that does not mean he designed every single life form plus its food supplies, let alone that he did so as part of the goal of evolving [= directly designing] humans.

DAVID: Who created the universe? Didn't God do it first hand with no intermediates? He created life all by Himself. Why your need for distancing Him in living designs? Trying to diminish His controls or His importance?

There is no diminution if your God decided to create a system by which his invention would be able to design all its own variations. On the “theodicy” thread you have now suggested that his powers are limited. Just like us humans, he can only act within his limitations. THAT is diminution.

DAVID: Your so-called intelligent cells, without brains, would need a universe-sized instruction book to follow to mimic God's abilities in new design. In all design work it is easier to do it yourself than parcel it out, although when over-whelmed co-equal designers help out at the human level. Please keep God at His level as you attempt to create theosophies at His level.

But according to you, your God did precisely that – he provided the first cells with an instruction book to be passed on for every undabbled life form, econiche, strategy and natural wonder in the history of life! And not just that, but for reasons you yourself cannot fathom, his goal in providing the instruction book for all life forms plus their food supplies was to produce one life form plus its food supplies, although 99% of the life forms produced by the instruction book had no connection with humans. I don’t know why this way of designing humans was “easier” for him, but you can’t figure that out either, can you?

Evolution: fish to land animals transition

by David Turell @, Saturday, November 28, 2020, 16:02 (1454 days ago) @ dhw

DAVID: Oops. My God doesn't do second-hand designs. Explaining all the requirements for new designs to individual cells is too complex rather than just doing the designs directly. Note today's entry about product controls designed by God.

dhw: Funny, I can’t find a single mention of God in the article. I did find this, though:

QUOTE: A paradigm shift occurred in the field of translation when it was discovered that cells use the translation machinery itself to detect errors and activate quality control mechanisms.

dhw: Cells seem to know what they’re doing, don’t they?

We've clearly discussed God's error correction editing systems in the past.


dhw: May I take it you will now acknowledge the feasibility of this theory?

DAVID: Absolutely not. God is not going to have designs made by second-hand methods. The intricacies of the biochemistry of life and of the physiology and mechanics of living forms is so complex only direct design will suffice. I don't know why you keep trying in your adopted quasi-theistic state attempt to move God to the back burner for the creation of life and the design of evolution.

dhw: I do not! I keep reiterating that if God exists, he is the creator of life and the designer of evolution! But that does not mean he designed every single life form plus its food supplies, let alone that he did so as part of the goal of evolving [= directly designing] humans.

How did we get here if we were not an anticipated goal stating from bacteria? We start with recognizing God created the universe. His purpose is evident when we see life appear.


DAVID: Who created the universe? Didn't God do it first hand with no intermediates? He created life all by Himself. Why your need for distancing Him in living designs? Trying to diminish His controls or His importance?

dhw: There is no diminution if your God decided to create a system by which his invention would be able to design all its own variations. On the “theodicy” thread you have now suggested that his powers are limited. Just like us humans, he can only act within his limitations. THAT is diminution.

The bold is, as usual, a distortion of my statement that limitations may exist, which does not suggest they are really limited.


DAVID: Your so-called intelligent cells, without brains, would need a universe-sized instruction book to follow to mimic God's abilities in new design. In all design work it is easier to do it yourself than parcel it out, although when over-whelmed co-equal designers help out at the human level. Please keep God at His level as you attempt to create theosophies at His level.

dhw: But according to you, your God did precisely that – he provided the first cells with an instruction book to be passed on for every undabbled life form, econiche, strategy and natural wonder in the history of life!

Only a theory, not fact, of pre-planned coding.

dhw: And not just that, but for reasons you yourself cannot fathom, his goal in providing the instruction book for all life forms plus their food supplies was to produce one life form plus its food supplies, although 99% of the life forms produced by the instruction book had no connection with humans. I don’t know why this way of designing humans was “easier” for him, but you can’t figure that out either, can you?

I don't try to figure out God's reasons. They are His alone. He chose evolution with all its necessary branches for food supply. Life lives on energy consumption. I know you must eat even now chocolatiness, but you constantly leave out all the necessary components for evolution to work.

Evolution: fish to land animals transition; another study

by David Turell @, Saturday, November 28, 2020, 21:56 (1454 days ago) @ David Turell

From the standpoint of eating and brain bony cases:

https://www.sciencedaily.com/releases/2020/11/201123101009.htm

"The international study of the prehistoric 'relic' tetrapods, including salamander and lobe-finned lungfish and coelacanths, adds another perspective to the evolution of other four-legged land animals, including related animals such as frogs and reptiles which live in both terrestrial and aqueous environments.

***

"Using micro-CT and MRI scans to make 3D models of small animal heads, palaeontology researchers from the University of Edinburgh, University of Calgary and Flinders University shone a light on how the eating habits and brains of the some of the first land-based lifeforms prepared them for life on dry land.

"The study published in the journal Royal Society Open Science, Flinders University researcher Dr Alice Clement says the transition from water to land by the earliest tetrapods (backboned animals with four legs rather than fins) in the Devonian Period (359-419 million years ago) is seen as one of the greatest steps in evolution. But she says little is known about the changes in brain morphology over this transition.

***

"'Our main finding is that salamanders and lungfish have brains quite similar in size and shape to each other, while the coelacanth is a real outlier with a tiny brain."

"University of Edinburgh researcher Dr Tom Challands says the high-tech scanning of braincase and jaw structure in six sarcopterygians shows a correlation between how tight or loose the brain fills the skull.

"'For the first time, we have been able to demonstrate the interplay between how the jaw muscles affect how the brain sits inside the brain cavity," says first author Dr Tom Challands, from University of Edinburgh's Grant Institute of Earth Sciences.

"'As animals made their way out of water and on to land, their food sources changed and the brain had to adapt to a completely new way of living -- different sensory processing, different control for movement, balance, and so on," he says.

"'Each of these plays against each other and our work basically shows the effect of masticatory (eating) changes are balanced with maintaining a skull that can support and protect the brain."

"He says some of the features of these earliest land animals is reflected in other modern animals.

"'Moreover we see similarities between the fish and land animals, suggesting that some muscle-brain-skull arrangements were already primed for living on land." (my bold)

Comment: Note the bold. Who did the priming? Certainly not Darwin mechanisms. This is just like the 20+ million year old monkey noted in my bool The Atheist Delusion which had lumbar bone changes suggesting upright posture was coming! God anticipates change in evolution, based on these findings.

Evolution: fish to land animals transition

by dhw, Sunday, November 29, 2020, 09:14 (1454 days ago) @ David Turell

dhw: May I take it you will now acknowledge the feasibility of this theory [i.e. cellular intelligence as the driving force of evolution]?

DAVID: Absolutely not. God is not going to have designs made by second-hand methods. The intricacies of the biochemistry of life and of the physiology and mechanics of living forms is so complex only direct design will suffice. I don't know why you keep trying in your adopted quasi-theistic state attempt to move God to the back burner for the creation of life and the design of evolution.

dhw: I do not! I keep reiterating that if God exists, he is the creator of life and the designer of evolution! But that does not mean he designed every single life form plus its food supplies, let alone that he did so as part of the goal of evolving [= directly designing] humans.

DAVID: How did we get here if we were not an anticipated goal stating from bacteria? We start with recognizing God created the universe. His purpose is evident when we see life appear.

With my theist’s hat on, of course I will accept that your God created the universe, and that he created life on purpose. This is your usual dodge of glossing over all the flaws in the rest of your theory. For those of us who believe in evolution as common descent, EVERY life form got here, starting from bacteria! So please stop ignoring the bold above.

DAVID: Who created the universe? Didn't God do it first hand with no intermediates? He created life all by Himself. Why your need for distancing Him in living designs? Trying to diminish His controls or His importance?

dhw: There is no diminution if your God decided to create a system by which his invention would be able to design all its own variations. On the “theodicy” thread you have now suggested that his powers are limited. Just like us humans, he can only act within his limitations. THAT is diminution.

DAVID: The bold is, as usual, a distortion of my statement that limitations may exist, which does not suggest they are really limited.

Nobody knows the reality, but you have made a suggestion, and I have pointed out its implications. Please don’t make a suggestion if you don’t want it to be taken seriously as a possibility.

DAVID: Your so-called intelligent cells, without brains, would need a universe-sized instruction book to follow to mimic God's abilities in new design. In all design work it is easier to do it yourself than parcel it out, although when over-whelmed co-equal designers help out at the human level. Please keep God at His level as you attempt to create theosophies at His level.

dhw: But according to you, your God did precisely that – he provided the first cells with an instruction book to be passed on for every undabbled life form, econiche, strategy and natural wonder in the history of life!

DAVID: Only a theory, not fact, of pre-planned coding.

NONE of our theories are fact! You have offered only two methods by which your God controlled evolution: preprogramming and dabbling. You have pooh-poohed the idea that cells would need a universe-sized instruction book to come up with every life form etc., but that is YOUR idea. Mine is that they work out their own designs, using their perhaps God-give intelligence. If you now wish to withdraw your theory that every undabbled life form, natural wonder etc. is preprogrammed with your God’s “universe-sized instruction book”, then by all means do so. That leaves your God dabbling every single life form etc.

dhw: And not just that, but for reasons you yourself cannot fathom, his goal in providing the instruction book for all life forms plus their food supplies was to produce one life form plus its food supplies, although 99% of the life forms produced by the instruction book had no connection with humans. I don’t know why this way of designing humans was “easier” for him, but you can’t figure that out either, can you?

DAVID: I don't try to figure out God's reasons. They are His alone. He chose evolution with all its necessary branches for food supply. Life lives on energy consumption. I know you must eat even now chocolatiness, but you constantly leave out all the necessary components for evolution to work.

We have been over this time and time again. Nobody will deny that every life form needs food. But you have acknowledged that past food supplies were for the PAST and had nothing to do with the PRESENT, and yet still you refuse to acknowledge the illogicality of your God directly designing millions of life forms and food supplies that had no connection with humans, although you claim every one of them was “part of the goal of evolving [-= directly designing] humans.”

Evolution: fish to land animals transition

by David Turell @, Sunday, November 29, 2020, 18:46 (1453 days ago) @ dhw

DAVID: How did we get here if we were not an anticipated goal stating from bacteria? We start with recognizing God created the universe. His purpose is evident when we see life appear.

dhw: With my theist’s hat on, of course I will accept that your God created the universe, and that he created life on purpose. This is your usual dodge of glossing over all the flaws in the rest of your theory. For those of us who believe in evolution as common descent, EVERY life form got here, starting from bacteria! So please stop ignoring the bold above.

I ignore your bold because our beliefs are so different. Under my belief system I find your objections as totally illogical. As God is in charge He does whatever He wishes for whatever His reasons happen to be.


DAVID: Who created the universe? Didn't God do it first hand with no intermediates? He created life all by Himself. Why your need for distancing Him in living designs? Trying to diminish His controls or His importance?

dhw: There is no diminution if your God decided to create a system by which his invention would be able to design all its own variations. On the “theodicy” thread you have now suggested that his powers are limited. Just like us humans, he can only act within his limitations. THAT is diminution.

DAVID: The bold is, as usual, a distortion of my statement that limitations may exist, which does not suggest they are really limited.

dhw: Nobody knows the reality, but you have made a suggestion, and I have pointed out its implications. Please don’t make a suggestion if you don’t want it to be taken seriously as a possibility.

But you take off in your subsequent discussion as though it is probable. Possibilities should be entertained to have a fair and open discussion.


DAVID: Your so-called intelligent cells, without brains, would need a universe-sized instruction book to follow to mimic God's abilities in new design. In all design work it is easier to do it yourself than parcel it out, although when over-whelmed co-equal designers help out at the human level. Please keep God at His level as you attempt to create theosophies at His level.

dhw: But according to you, your God did precisely that – he provided the first cells with an instruction book to be passed on for every undabbled life form, econiche, strategy and natural wonder in the history of life!

DAVID: Only a theory, not fact, of pre-planned coding.

dhw: NONE of our theories are fact! You have offered only two methods by which your God controlled evolution: preprogramming and dabbling. You have pooh-poohed the idea that cells would need a universe-sized instruction book to come up with every life form etc., but that is YOUR idea. Mine is that they work out their own designs, using their perhaps God-give intelligence. If you now wish to withdraw your theory that every undabbled life form, natural wonder etc. is preprogrammed with your God’s “universe-sized instruction book”, then by all means do so. That leaves your God dabbling every single life form etc.

It still is either preplanned coding or constant dabbling. I do favor the latter. You can't explain the source of the intelligent actions of cells, but when forced you drag God in to stay balanced on your picket fence. But even then it is hedged with God giving second-hand inventive mechanisms, so cells sort of do it own their own, God in the background, in a secondary position for all new designs. I always see God as in primary control, but you never can accept that.


dhw: And not just that, but for reasons you yourself cannot fathom, his goal in providing the instruction book for all life forms plus their food supplies was to produce one life form plus its food supplies, although 99% of the life forms produced by the instruction book had no connection with humans. I don’t know why this way of designing humans was “easier” for him, but you can’t figure that out either, can you?

DAVID: I don't try to figure out God's reasons. They are His alone. He chose evolution with all its necessary branches for food supply. Life lives on energy consumption. I know you must eat even now chocolatiness, but you constantly leave out all the necessary components for evolution to work.

dhw: We have been over this time and time again. Nobody will deny that every life form needs food. But you have acknowledged that past food supplies were for the PAST and had nothing to do with the PRESENT, and yet still you refuse to acknowledge the illogicality of your God directly designing millions of life forms and food supplies that had no connection with humans, although you claim every one of them was “part of the goal of evolving [-= directly designing] humans.”

The usual silliness. Evolution from bacteria to humans is a continuum. You want to chop it up into unrelated segments when everything present is obviously related to the past.

Evolution: fish to land animals transition

by dhw, Monday, November 30, 2020, 13:51 (1452 days ago) @ David Turell

DAVID: Under my belief system I find your objections as totally illogical. As God is in charge He does whatever He wishes for whatever His reasons happen to be.

I totally agree that if God exists, he does or did whatever he wishes or wished. But that does not mean he did what YOU say he did! How can you find my objections to your theory “totally illogical” when you cannot explain how the direct design of millions of extinct life forms and food supplies that had no connection with humans and their food supplies could have been “part of the goal of evolving [= directly designing] humans”?

DAVID: […] Why your need for distancing Him in living designs? Trying to diminish His controls or His importance?

dhw: There is no diminution if your God decided to create a system by which his invention would be able to design all its own variations. On the “theodicy” thread you have now suggested that his powers are limited. Just like us humans, he can only act within his limitations. THAT is diminution.

DAVID: The bold is, as usual, a distortion of my statement that limitations may exist, which does not suggest they are really limited.

dhw: Nobody knows the reality, but you have made a suggestion, and I have pointed out its implications. Please don’t make a suggestion if you don’t want it to be taken seriously as a possibility.

DAVID: But you take off in your subsequent discussion as though it is probable. Possibilities should be entertained to have a fair and open discussion.

I did not say it was probable, and yes indeed, we should entertain all possibilities to have a fair and open discussion. You propose the possibility of limitations, I explain how this could lead to experimentation, and I ask for flaws in my proposal, and what other limitations you can envisage. So now you don’t want a fair and open discussion.

DAVID: Your so-called intelligent cells, without brains, would need a universe-sized instruction book to follow to mimic God's abilities in new design.[…] .

dhw: But according to you, your God did precisely that – he provided the first cells with an instruction book to be passed on for every undabbled life form, econiche, strategy and natural wonder in the history of life!

DAVID: Only a theory, not fact, of pre-planned coding.

dhw: NONE of our theories are fact! […] You have pooh-poohed the idea of cells needing a universe-sized instruction book to come up with every life form etc., but that is YOUR idea. Mine is that they work out their own designs, using their perhaps God-given intelligence. If you now wish to withdraw your theory that every undabbled life form, natural wonder etc. is preprogrammed with your God’s “universe-sized instruction book”, then by all means do so. That leaves your God dabbling every single life form etc.

DAVID: It still is either preplanned coding or constant dabbling. I do favor the latter. You can't explain the source of the intelligent actions of cells, but when forced you drag God in to stay balanced on your picket fence. But even then it is hedged with God giving second-hand inventive mechanisms, so cells sort of do it own their own, God in the background, in a secondary position for all new designs. I always see God as in primary control, but you never can accept that.

You ridiculed the idea of cells needing a universe-sized instruction book, but then it turned out this was your own idea, so you’re happy to go back to it. I’m an agnostic, and I cannot leave God out of any theory. I have proposed a God who did not want direct control, but who allowed free rein because he wanted the ever changing bush which we know from history. But it is also possible that your God was in primary control, and even that humans were his goal, as you propose. However, that leads to the problem you can never solve - why he would directly design all those millions of life forms that had no connection with humans – but I CAN solve it with another theory: that God is a learning God, not a know-all, and so either he experimented, or humans were a late arrival in his thinking. All this is “entertaining all possibilities and having a fair and open discussion” – and you try to block it at every turn with your refusal to face up to the problem just mentioned, and with your silly objection to any explanation as “humanizing” a God who probably has thought patterns and emotions like ours, and very well could think like us. And your final objection:

DAVID: Evolution from bacteria to humans is a continuum. You want to chop it up into unrelated segments when everything present is obviously related to the past.

Everything present is related to the past through common descent, but you have agreed that evolution branched out in millions of directions. There can only be one “continuum” from bacteria to humans, but the other 99% of extinct life forms, food supplies, econiches, strategies, natural wonders etc. by your own admission had no connection with humans, No connection means unrelated segments. Why do you constantly agree with these objections and then try to withdraw your agreement?

Evolution: fish to land animals transition

by David Turell @, Monday, November 30, 2020, 23:18 (1452 days ago) @ dhw

DAVID: Under my belief system I find your objections as totally illogical. As God is in charge He does whatever He wishes for whatever His reasons happen to be.

dhw: I totally agree that if God exists, he does or did whatever he wishes or wished. But that does not mean he did what YOU say he did! How can you find my objections to your theory “totally illogical” when you cannot explain how the direct design of millions of extinct life forms and food supplies that had no connection with humans and their food supplies could have been “part of the goal of evolving [= directly designing] humans”?

The illogical complaint that you offer about God's using evolution has nothing to do with the fact and I do not and cannot know his reasoning.


dhw: I did not say it was probable, and yes indeed, we should entertain all possibilities to have a fair and open discussion. You propose the possibility of limitations, I explain how this could lead to experimentation, and I ask for flaws in my proposal, and what other limitations you can envisage. So now you don’t want a fair and open discussion.

No. I want a fair discussion without distortions of comments


DAVID: It still is either preplanned coding or constant dabbling. I do favor the latter. You can't explain the source of the intelligent actions of cells, but when forced you drag God in to stay balanced on your picket fence. But even then it is hedged with God giving second-hand inventive mechanisms, so cells sort of do it own their own, God in the background, in a secondary position for all new designs. I always see God as in primary control, but you never can accept that.

dhw: You ridiculed the idea of cells needing a universe-sized instruction book, but then it turned out this was your own idea, so you’re happy to go back to it. I’m an agnostic, and I cannot leave God out of any theory. I have proposed a God who did not want direct control, but who allowed free rein because he wanted the ever changing bush which we know from history. But it is also possible that your God was in primary control, and even that humans were his goal, as you propose. However, that leads to the problem you can never solve - why he would directly design all those millions of life forms that had no connection with humans

Same strange complaint as if you think God should have done our creation in some other way than history tells us.

dhw: – but I CAN solve it with another theory: that God is a learning God, not a know-all, and so either he experimented, or humans were a late arrival in his thinking. All this is “entertaining all possibilities and having a fair and open discussion” – and you try to block it at every turn with your refusal to face up to the problem just mentioned, and with your silly objection to any explanation as “humanizing” a God who probably has thought patterns and emotions like ours, and very well could think like us.

I face up to my problems and come up with solutions that fit my logic. God is fully in charge, He knows exactly what He wishes to accomplish and evolved us over time. Not the wishy-washy semi-deity of your very fertile so-called theistic imagination.

And your final objection:


DAVID: Evolution from bacteria to humans is a continuum. You want to chop it up into unrelated segments when everything present is obviously related to the past.

dhw: Everything present is related to the past through common descent, but you have agreed that evolution branched out in millions of directions. There can only be one “continuum” from bacteria to humans, but the other 99% of extinct life forms, food supplies, econiches, strategies, natural wonders etc. by your own admission had no connection with humans, No connection means unrelated segments. Why do you constantly agree with these objections and then try to withdraw your agreement?

They are all connected to the original bacteria by common descent. They all use the same DNA. Even Darwin drew a tree of life in his famous notebook. I guess as you analyze you are a splitter, not a grouper.

Evolution: fish to land animals transition

by dhw, Tuesday, December 01, 2020, 13:56 (1451 days ago) @ David Turell

DAVID: Under my belief system I find your objections as totally illogical. As God is in charge He does whatever He wishes for whatever His reasons happen to be.

dhw: I totally agree that if God exists, he does or did whatever he wishes or wished. But that does not mean he did what YOU say he did! How can you find my objections to your theory “totally illogical” when you cannot explain how the direct design of millions of extinct life forms and food supplies that had no connection with humans and their food supplies could have been “part of the goal of evolving [= directly designing] humans”?

DAVID: The illogical complaint that you offer about God's using evolution has nothing to do with the fact and I do not and cannot know his reasoning.

I am not complaining about God “using evolution”, but about your theory that he had one goal (humans) and proceeded to directly design anything but humans. Your theory has “nothing to do with the facts” and your inability to find a logical explanation suggests that your theory may be wrong.

DAVID (under “Theodicy”): My thought is God had to evolve us, and was incapable of direct creation without the bush of life preceding us.

So your God was capable of directly designing all the unconnected species and bushes that preceded us, but he “had to” design THEM because he was incapable of directly designing the one he wanted (until he started directly designing the stages that led to the one he wanted.) Oh well, if that fits in with your image of God, so be it, but I still can’t see why he “had to” directly design the brontosaurus et al in order to design the stages that led to H. sapiens. Sorry.

dhw: […] I have proposed a God who did not want direct control, but who allowed free rein because he wanted the ever changing bush which we know from history. But it is also possible that your God was in primary control, and even that humans were his goal, as you propose. However, that leads to the problem you can never solve - why he would directly design all those millions of life forms that had no connection with humans.

DAVID: Same strange complaint as if you think God should have done our creation in some other way than history tells us.

Yet again, I’m not challenging your God but your INTERPRETATION of history, as bolded above, for which you are unable to provide a logical explanation.

dhw: – but I CAN solve it with another theory: that God is a learning God, not a know-all, and so either he experimented, or humans were a late arrival in his thinking. All this is “entertaining all possibilities and having a fair and open discussion” – and you try to block it at every turn with your refusal to face up to the problem just mentioned […].

DAVID: I face up to my problems and come up with solutions that fit my logic.

“I do not and cannot know his reasoning” is not much of a solution.

DAVID: God is fully in charge, He knows exactly what He wishes to accomplish and evolved us over time. Not the wishy-washy semi-deity of your very fertile so-called theistic imagination.

There is nothing “wishy-washy” or “semi” about a God who experiments, or who learns as he goes along, or who watches his creations with interest and who created them for that very purpose.

DAVID: Evolution from bacteria to humans is a continuum. You want to chop it up into unrelated segments when everything present is obviously related to the past.

dhw: Everything present is related to the past through common descent, but you have agreed that evolution branched out in millions of directions.[…]

DAVID: They are all connected to the original bacteria by common descent.

I have just said that (now bolded).

DAVID: They all use the same DNA. Even Darwin drew a tree of life in his famous notebook. I guess as you analyze you are a splitter, not a grouper.

You are deliberately missing the point. There can only be one “continuum” from bacteria to humans, but you insist that every life form on every branch was “part of the goal of evolving humans”, even though 99% had no direct connection with humans. Since you cannot find any logical explanation for this part of your theory but it is fixed in your mind, I suggest we leave it at that.

Evolution: fish to land animals transition

by David Turell @, Tuesday, December 01, 2020, 18:20 (1451 days ago) @ dhw

DAVID: The illogical complaint that you offer about God's using evolution has nothing to do with the fact and I do not and cannot know his reasoning.

dhw: I am not complaining about God “using evolution”, but about your theory that he had one goal (humans) and proceeded to directly design anything but humans. Your theory has “nothing to do with the facts” and your inability to find a logical explanation suggests that your theory may be wrong.

Your complaint is always against God, not my interpretation. I fully believe God has created everything, and since history tells us we evolved, that is what He decided to do. Perfect theistic logic.


DAVID (under “Theodicy”): My thought is God had to evolve us, and was incapable of direct creation without the bush of life preceding us.

dhw: So your God was capable of directly designing all the unconnected species and bushes that preceded us, but he “had to” design THEM because he was incapable of directly designing the one he wanted (until he started directly designing the stages that led to the one he wanted.) Oh well, if that fits in with your image of God, so be it, but I still can’t see why he “had to” directly design the brontosaurus et al in order to design the stages that led to H. sapiens. Sorry.

Don't be sorry for your strange view.


dhw: Yet again, I’m not challenging your God but your INTERPRETATION of history, as bolded above, for which you are unable to provide a logical explanation.

Can't you understand I have no need to explain His choice of action. It's your lonely issue.


dhw: “I do not and cannot know his reasoning” is not much of a solution.

I accept what I see. Do you know God's reasoning? If so, you are the first ever.


DAVID: God is fully in charge, He knows exactly what He wishes to accomplish and evolved us over time. Not the wishy-washy semi-deity of your very fertile so-called theistic imagination.

dhw: There is nothing “wishy-washy” or “semi” about a God who experiments, or who learns as he goes along, or who watches his creations with interest and who created them for that very purpose.

A purposeful God who creates a complex universe, then invents life, and suddenly converts to a struggling God, who has to experiment with evolution, is an inconsistent theory of God's personality and abilities. Utter confusion on your part.


DAVID: Evolution from bacteria to humans is a continuum. You want to chop it up into unrelated segments when everything present is obviously related to the past.

dhw: Everything present is related to the past through common descent, but you have agreed that evolution branched out in millions of directions.[…]

DAVID: They are all connected to the original bacteria by common descent.

dhw: I have just said that (now bolded).

DAVID: They all use the same DNA. Even Darwin drew a tree of life in his famous notebook. I guess as you analyze you are a splitter, not a grouper.

dhw: You are deliberately missing the point. There can only be one “continuum” from bacteria to humans, but you insist that every life form on every branch was “part of the goal of evolving humans”, even though 99% had no direct connection with humans. Since you cannot find any logical explanation for this part of your theory but it is fixed in your mind, I suggest we leave it at that.

I never miss a point in your splitter approach. Of course evolution branched out with the purpose you keep minimizing of a necessary food supply for all. And as you back off you admit the need for food as a major part and purpose of the whole process of evolution..

Evolution: Cichlid fish variations

by David Turell @, Wednesday, December 02, 2020, 01:10 (1451 days ago) @ David Turell

All the many 240 species show minor variations of the same original ancestor nine million plus years ago:

https_www.quantamagazine.org/?url=https%3A%2F%2Fwww.quantamagazine.org%2Fnew-

"Africa’s deepest freshwater lake holds a dizzying array of animals, including hundreds of species of cichlid fish found nowhere else in the world. They crowd the waters of Lake Tanganyika, with scales and stripes in most colors of the rainbow. One kind of cichlid there measures just over an inch; others are 2 to 3 feet long. “When you’re snorkeling in the water with these fish, it’s just incredibly striking how different they are,” said Catherine Wagner, an assistant professor of botany at the University of Wyoming. Throughout history, local fishermen have pulled up the cichlids in nets for food, but for several decades researchers from around the globe have collected these fish as well in their quest to understand that lush diversity.

***

"...these fish, which diversified from one common ancestor to an astonishing 240 or so cichlid species in less than 10 million years.

"That’s a very small amount of time for so many species to evolve, said Walter Salzburger, an associate professor at the University of Basel’s Zoological Institute and senior author on the study. And this process wasn’t gradual or random — the data reveals that these cichlids evolved predominantly in bursts. “It’s still surprising how clear and distinct these pulses of accelerated evolution are,” Salzburger said.

***

"One finding was that all but a handful of the species have a common ancestor that lived only about 9.7 million years ago. That corresponds to shortly after Lake Tanganyika is believed to have formed, which strongly implies that the species evolved within the lake from that one ancestral species, and not from multiple colonization events over the millennia.

***

"Evolutionary theorists have two models for how adaptive radiation might play out. In one, rapid diversification in some aspect of body morphology produces a burst of new species at first, and then speciation slows as the available niches fill up. In the other model, differences in species emerge in stages as a lineage cracks open opportunities available to it, which means that the rate of speciation can both rise and fall over time. Evolutionary biologists have turned up only limited evidence to bolster either of these theories.

***

“'The question of what determines biological diversity has pestered evolutionary biologists ever since Wallace and Darwin came up with their theory of evolution,” Salzburger said. The new study doesn’t provide conclusive answers, but it does expose a possibly telling imbalance in the cichlids’ evolutionary tree. Some branches saw an abundance of species form, while others remained sparse. In those differences, the researchers spotted an intriguing relationship: The most genetically diverse cichlid species were from branches that gave rise to more species; the sparest branches held the most genetically homogenous species.

"This difference in genetic diversity across branches could be explained by hybridization, in which different cichlid species interbreed and introduce more genetic diversity into a genome. “This idea has been floating around, and there’s been more and more evidence for it,” Wagner said. Hybridization is often suspected to fuel the explosive evolution that constitutes an adaptive radiation. “But this is kind of a different take on it, that hybridization may be a really pervasive pattern,” she said.

***

"...hybridization could play an even more central role early in the cichlids’ evolution, Meier said. Hybridization in cichlid ancestors could even have triggered the adaptive radiations that produced so many species."

Comment: True speciation is in the eye of the beholder, be he splitter This does not help us understand the huge gaps Gould noted.

Evolution: bird beak sixth sense

by David Turell @, Wednesday, December 02, 2020, 01:18 (1451 days ago) @ David Turell

It is remote sensing of prey:

https://www.newscientist.com/article/2261317-bird-beak-extra-sense-evolved-more-than-70...

:An organ that allows certain birds to detect the movement of hidden prey by plunging their beaks into the ground was also present in early birds 70 million years ago, and probably first appeared in their dinosaur ancestors.

"Special “remote touch” sensory receptors known as Herbst corpuscles, which are found within densely-packed pits in the beak’s tip, help birds detect the movement of worms in soil or small fish in water – even several centimetres away from the bird’s beak. This effectively gives birds a “sixth sense”, according to Carla du Toit at the University of Cape Town in South Africa and her colleagues.

***

"By examining specimens of modern birds, the researchers identified distinct pitting patterns in the beak associated with Herbst corpuscles, says du Toit. The team then found those same patterns in lithornithid fossil beaks, which suggests that lithornithids had the same sensory abilities and were probe-foraging birds.

"The discovery makes sense, because Herbst corpuscles are found in both palaeognaths such as kiwis, and in neognaths such as ibises. The two groups separated from one another more than 70 million years ago, which would suggest Herbst corpuscles evolved in the common ancestor of both bird groups.

"In fact, the sensory structures might have evolved in dinosaurs, says du Toit. A “sixth sense” feature might have helped carnivorous theropods such as Neovenator find prey by probing their snouts into mud or murky water, she says."

Comment: If the prey is remote, how does the animal know what it is looking for? Sems it had to be designed for use.

Evolution: Cichlid fish variations

by dhw, Wednesday, December 02, 2020, 12:56 (1450 days ago) @ David Turell

QUOTE: "Evolutionary theorists have two models for how adaptive radiation might play out. In one, rapid diversification in some aspect of body morphology produces a burst of new species at first, and then speciation slows as the available niches fill up. In the other model, differences in species emerge in stages as a lineage cracks open opportunities available to it, which means that the rate of speciation can both rise and fall over time. Evolutionary biologists have turned up only limited evidence to bolster either of these theories.
This difference in genetic diversity across branches could be explained by hybridization, in which different cichlid species interbreed and introduce more genetic diversity into a genome.

DAVID: True speciation is in the eye of the beholder, be he splitter This does not help us understand the huge gaps Gould noted.

Of course it does. But I see no reason why the authors don’t combine all three theories. When niches fill up, or when new opportunities arise, the cichlids adapt themselves accordingly. And the new forms can still interbreed with the surviving older forms. The gaps in speciation are caused by the gaps between changes to the environment or the gradual exhaustion of existing niches, which would require exploitation of different niches.

Evolution: Cichlid fish variations

by David Turell @, Wednesday, December 02, 2020, 21:05 (1450 days ago) @ dhw

QUOTE: "Evolutionary theorists have two models for how adaptive radiation might play out. In one, rapid diversification in some aspect of body morphology produces a burst of new species at first, and then speciation slows as the available niches fill up. In the other model, differences in species emerge in stages as a lineage cracks open opportunities available to it, which means that the rate of speciation can both rise and fall over time. Evolutionary biologists have turned up only limited evidence to bolster either of these theories.
This difference in genetic diversity across branches could be explained by hybridization, in which different cichlid species interbreed and introduce more genetic diversity into a genome.

DAVID: True speciation is in the eye of the beholder, be he splitter or grouper. This does not help us understand the huge gaps Gould noted.

dhw: Of course it does. But I see no reason why the authors don’t combine all three theories. When niches fill up, or when new opportunities arise, the cichlids adapt themselves accordingly. And the new forms can still interbreed with the surviving older forms. The gaps in speciation are caused by the gaps between changes to the environment or the gradual exhaustion of existing niches, which would require exploitation of different niches.

Gould's gaps were huge changes in phenotype and physiological processes. These are tiny variations in a family of fish.

Evolution: water to land limb changes studied

by David Turell @, Friday, January 22, 2021, 23:16 (1399 days ago) @ David Turell

It took much research, but there are still huge gaps:

https://phys.org/news/2021-01-forelimb-function-vertebrates-limbs.html

"The earliest tetrapods originated from their fish ancestors in the Devonian period and are more than twice as old as the oldest dinosaur fossils. They resembled a cross between a giant salamander and a crocodile and were about 1-2 meters long, had gills, webbed feet and tail fins, and were still heavily tied to water. Their short arms and legs had up to eight digits on each hand and foot and they were probably ambush predators, lurking in shallow water waiting for prey to come near.

***

"The research led by Julia Molnar, Assistant Professor at New York Institute of Technology College of Osteopathic Medicine and Stephanie Pierce, Thomas D. Cabot Associate Professor of Organismic and Evolutionary Biology at Harvard University, discovered three distinct functional stages in the transition from fins to limbs, and that these early tetrapods had a very distinct pattern of muscle leverage that didn't look like a fish fin or modern tetrapod limbs.

***

"To determine how the fins and limbs worked, the researchers used computational software originally developed to study human locomotion. This technique had been used recently to study locomotion in the ancestors of humans and also dinosaurs like T. rex, but never in something as old as an early tetrapod.

***

"The fin from Eusthenopteron had a pattern that was reminiscent of the lungfish, which is one of the closest living relatives of tetrapods," said Pierce. "But the early tetrapod limbs showed more similarities to each other than either fish or modern tetrapods."

"That was perhaps the most surprising," said Molnar. "I thought Pederpes, and possibly Acanthostega, would fall pretty well within the range of modern tetrapods. But they formed their own distinct cluster that didn't look like a modern tetrapod limb or a fish fin. They were not smack dab in the middle but had their own collection of characteristics that probably reflected their unique environment and behaviors."

"The results showed that early tetrapod limbs were more adapted for propulsion rather than weight bearing. In the water, animals use their limbs for propulsion to move themselves forward or backward allowing the water to support their body weight. Moving on land, however, requires the animal act against gravity and push downward with their limbs to support their body mass.

"This doesn't mean that early tetrapods were incapable of moving on land, but rather they didn't move like a modern-day living tetrapod. Their means of locomotion was probably unique to these animals that were still very much tied to the water, but were also venturing onto land, where there were many opportunities for vertebrate animals but little competition or fear from predators."

Comment: I did not cover the lengthy description of the methodology, but the results are a mazing. The problem is the changes jump ahead as new functions appear and no tiny alterations are ever found. Back to Gould's gaps. I've had courses in comparative anatomy in pre-med. Muscles and bones can be compared and similarities always seen. For example, we know the horse hoof and leg are exactly equivalent to a single human toe and nail. So we know similarities don't help us with the gaps in form and function. The gaps tell us speciation is not due to simple step-by-step adaptations. You may ask for transitional forms, and they exist with huge gaps. From my viewpoint, the gaps tell us design is real.

Evolution: fish to land animals transition

by dhw, Wednesday, December 02, 2020, 12:30 (1450 days ago) @ David Turell

dhw: I am not complaining about God “using evolution”, but about your theory that he had one goal (humans) and proceeded to directly design anything but humans. Your theory has “nothing to do with the facts” and your inability to find a logical explanation suggests that your theory may be wrong.

DAVID: Your complaint is always against God, not my interpretation. I fully believe God has created everything, and since history tells us we evolved, that is what He decided to do. Perfect theistic logic.

Of course it’s your interpretation, but as usual, you have gone back to glossing over the illogical part of your interpretation, which has your God directly designing millions of extinct life forms plus food supplies unconnected with humans, although his only purpose was to design humans and their food supplies. But you did offer an answer last time:

DAVID (under “Theodicy”): My thought is God had to evolve us, and was incapable of direct creation without the bush of life preceding us.

dhw: So your God was capable of directly designing all the unconnected species and bushes that preceded us, but he “had to” design THEM because he was incapable of directly designing the one he wanted (until he started directly designing the stages that led to the one he wanted.) Oh well, if that fits in with your image of God, so be it, but I still can’t see why he “had to” directly design the brontosaurus et al in order to design the stages that led to H. sapiens. Sorry.

DAVID: Don't be sorry for your strange view.

This response does not explain why he “had to” directly design the brontosaurus et al, which had no connection with humans, in order to design the stages that led to H. sapiens.

DAVID: Can't you understand I have no need to explain His choice of action. It's your lonely issue.

Can’t you understand that “having to” directly design the brontosaurus - which had no direct connection with humans – because he couldn’t directly design humans (until he could directly design every individual hominid etc. leading to humans) makes no sense, and therefore it is possible that this was not his choice of purpose/method but he had OTHER reasons for designing the brontosaurus, or maybe he didn’t design the brontosaurus at all?

DAVID: I accept what I see. Do you know God's reasoning? If so, you are the first ever.

Nobody knows it, and that is why we have theories. I have offered you several, all of which you have accepted as logical. Two of them allowed for your interpretation of the history and the motive: experimentation to get to humans, or humans as a late idea.

DAVID: A purposeful God who creates a complex universe, then invents life, and suddenly converts to a struggling God, who has to experiment with evolution, is an inconsistent theory of God's personality and abilities. Utter confusion on your part.

This was your own utterly confusing and inconsistent theory that your God has limitations and was incapable of directly designing humans without first directly designing the brontosaurus plus a few million other life forms first. See above. Even the complex universe of constant comings and goings could be the outcome of experimentation to create the right conditions for life. What is wrong with picturing God as an experimental scientist?

DAVID: Evolution from bacteria to humans is a continuum. You want to chop it up into unrelated segments when everything present is obviously related to the past.[…]

dhw: You are deliberately missing the point. There can only be one “continuum” from bacteria to humans, but you insist that every life form on every branch was “part of the goal of evolving humans”, even though 99% had no direct connection with humans. Since you cannot find any logical explanation for this part of your theory but it is fixed in your mind, I suggest we leave it at that.

DAVID: I never miss a point in your splitter approach. Of course evolution branched out with the purpose you keep minimizing of a necessary food supply for all. And as you back off you admit the need for food as a major part and purpose of the whole process of evolution.

It is blindingly obvious that all forms of life need food, which is fundamental to the processes of evolution. But that does not explain why your God had to design millions of species and food supplies unconnected with humans and their food supplies, as “part of the goal of evolving humans”. There really is no point in continuing this discussion if you continue to ignore the issue over which we disagree.

Evolution: fish to land animals transition

by David Turell @, Wednesday, December 02, 2020, 19:42 (1450 days ago) @ dhw

DAVID: Don't be sorry for your strange view.

dhw: This response does not explain why he “had to” directly design the brontosaurus et al, which had no connection with humans, in order to design the stages that led to H. sapiens.

DAVID: Can't you understand I have no need to explain His choice of action. It's your lonely issue.

dhw: Can’t you understand that “having to” directly design the brontosaurus - which had no direct connection with humans – because he couldn’t directly design humans (until he could directly design every individual hominid etc. leading to humans) makes no sense, and therefore it is possible that this was not his choice of purpose/method but he had OTHER reasons for designing the brontosaurus, or maybe he didn’t design the brontosaurus at all?

DAVID: I accept what I see. Do you know God's reasoning? If so, you are the first ever.

dhw: Nobody knows it, and that is why we have theories. I have offered you several, all of which you have accepted as logical. Two of them allowed for your interpretation of the history and the motive: experimentation to get to humans, or humans as a late idea.

Again a weak humanized God devised by your fertile imagination, wandering around from point to point, not sure of how to go forward.


DAVID: A purposeful God who creates a complex universe, then invents life, and suddenly converts to a struggling God, who has to experiment with evolution, is an inconsistent theory of God's personality and abilities. Utter confusion on your part.

dhw: This was your own utterly confusing and inconsistent theory that your God has limitations and was incapable of directly designing humans without first directly designing the brontosaurus plus a few million other life forms first. See above. Even the complex universe of constant comings and goings could be the outcome of experimentation to create the right conditions for life. What is wrong with picturing God as an experimental scientist?

Not how I envision a powerful purposeful God who know exactly where He is headed in His creations. Proposing that God had to evolve us, for some unknown reason, is trying to be honestly complete in all considerations. Actually I don't believe it for a minute.


DAVID: Evolution from bacteria to humans is a continuum. You want to chop it up into unrelated segments when everything present is obviously related to the past.[…]

dhw: You are deliberately missing the point. There can only be one “continuum” from bacteria to humans, but you insist that every life form on every branch was “part of the goal of evolving humans”, even though 99% had no direct connection with humans. Since you cannot find any logical explanation for this part of your theory but it is fixed in your mind, I suggest we leave it at that.

DAVID: I never miss a point in your splitter approach. Of course evolution branched out with the purpose you keep minimizing of a necessary food supply for all. And as you back off you admit the need for food as a major part and purpose of the whole process of evolution.

dhw: It is blindingly obvious that all forms of life need food, which is fundamental to the processes of evolution. But that does not explain why your God had to design millions of species and food supplies unconnected with humans and their food supplies, as “part of the goal of evolving humans”. There really is no point in continuing this discussion if you continue to ignore the issue over which we disagree.

I don't ignore it. I find your complaint totally unreasonable, and without substance from my viewpoint of faith in God as the creator. I agree. We can go further on this point of disagreement.

Evolution: fish to land animals transition

by dhw, Thursday, December 03, 2020, 11:54 (1449 days ago) @ David Turell

DAVID: I accept what I see. Do you know God's reasoning? If so, you are the first ever.

dhw: Nobody knows it, and that is why we have theories. I have offered you several, all of which you have accepted as logical. Two of them allowed for your interpretation of the history and the motive: experimentation to get to humans, or humans as a late idea.

DAVID: Again a weak humanized God devised by your fertile imagination, wandering around from point to point, not sure of how to go forward.

But the history of evolution is precisely that: it branches out into millions of life forms and econiches and natural wonders, 99% of which have died out and had no connection with humans. “Point to point”. You cannot explain why your God would have directly designed them all if his goal was humans. You claim that they were all part of that goal but can find no connection yourself, and you come up with the idea that his powers were limited so he “had to design them” before he could design us. Why is this limitation of his powers any “weaker” than a God who experiments to get what he wants, or who learns and gets new ideas as he goes along?

DAVID: Not how I envision a powerful purposeful God who know exactly where He is headed in His creations. Proposing that God had to evolve us, for some unknown reason, is trying to be honestly complete in all considerations. Actually I don't believe it for a minute.

So you don’t believe your own proposal that he had limited powers, which leaves you with no explanation whatever for the 99% of extinct life forms which he directly designed as “part of the goal of evolving humans” even though they had no connection with humans. But you still find this blatant illogicality preferable to alternatives you acknowledge as being logical.

DAVID: [...] I find your complaint totally unreasonable, and without substance from my viewpoint of faith in God as the creator. I agree. We can go further on this point of disagreement.

You have yet again ignored the point of disagreement! I have no problem with your faith in God as the creator. It is your theory concerning his nature, purpose and method of achieving that purpose that I am challenging. If you find my “complaint” unreasonable, then please explain how 99% of his directly designed life forms could have been part of his goal of evolving humans when they had no direct connection with humans. I would like us to end this discussion, but not for the wrong reason.

Evolution: fish to land animals transition

by David Turell @, Thursday, December 03, 2020, 19:18 (1449 days ago) @ dhw

DAVID: I accept what I see. Do you know God's reasoning? If so, you are the first ever.

dhw: Nobody knows it, and that is why we have theories. I have offered you several, all of which you have accepted as logical. Two of them allowed for your interpretation of the history and the motive: experimentation to get to humans, or humans as a late idea.

DAVID: Again a weak humanized God devised by your fertile imagination, wandering around from point to point, not sure of how to go forward.

dhw: But the history of evolution is precisely that: it branches out into millions of life forms and econiches and natural wonders, 99% of which have died out and had no connection with humans. “Point to point”. You cannot explain why your God would have directly designed them all if his goal was humans. You claim that they were all part of that goal but can find no connection yourself, and you come up with the idea that his powers were limited so he “had to design them” before he could design us. Why is this limitation of his powers any “weaker” than a God who experiments to get what he wants, or who learns and gets new ideas as he goes along?

As before I believe in a God who knows exactly what he is doing, and if He was forced to evolve us, He recogni9zed His problem and proceeded with evolution. As for the branching, God knew we would reach enormous numbers of us and all the ecosystems provide a necessary food supply, all logically explained before.

DAVID: [...] I find your complaint totally unreasonable, and without substance from my viewpoint of faith in God as the creator. I agree. We can go further on this point of disagreement.

dhw: You have yet again ignored the point of disagreement! I have no problem with your faith in God as the creator. It is your theory concerning his nature, purpose and method of achieving that purpose that I am challenging. If you find my “complaint” unreasonable, then please explain how 99% of his directly designed life forms could have been part of his goal of evolving humans when they had no direct connection with humans. I would like us to end this discussion, but not for the wrong reason.

I don't recognize your illogical complaint at all, from my belief in God. We've covered the point that He either had to evolve us or chose to evolve us. Either way I view him as in charge of creation, and your strange complaint as a criticism of God's methodology. The 99% simply represent evolution from bacteria to us and the huge current bush is food supply for a huge human population and is developed from all the previous 99% branching.

Evolution: aquatic mammal low oxygen adaptations

by David Turell @, Thursday, December 03, 2020, 22:00 (1449 days ago) @ David Turell

Extraordinary changes were required and this is what is found:

https://phys.org/news/2020-12-marine-mammals-oxygen-perspective-covid-.html

"'Diving marine mammals experience a lifetime of rapid physiological transitions between normal oxygenation and hypoxia [low oxygen levels]," Williams said. "They've got ways to protect themselves and allow their organs to keep functioning while holding their breath for hours at a time, but there's a whole suite of biological adaptations that had to happen for them to be able to do that."

***

"The heart and brain are especially sensitive to oxygen deprivation, and marine mammals have multiple mechanisms to protect these and other critical organs. In the first place, marine mammals have much higher oxygen carrying capacity than humans due to their greater blood volume and hemoglobin concentrations. In addition, some marine mammals contract their spleen during dives to release a store of oxygen-rich blood cells into the circulation. To avoid blood clots resulting from such high concentrations of red blood cells, many species lack a key clotting factor found in other mammals.

"Other adaptations include greatly increased concentrations of oxygen-carrying proteins such as myoglobin in heart and skeletal muscles and neuroglobin and cytoglobin in the brain. In addition, numerous safety factors and biochemical buffers enable even the most oxygen-dependent tissues in marine mammals to withstand not only low oxygen but also the subsequent reperfusion of tissues with oxygenated blood. In humans, reperfusion after a heart attack or stroke often leads to additional tissue damage."

Comment: These are intense physiological and phenotypical alterations. It always raises the observation, why if survival as a mammal is so complex why did mammals enter an aquatic life? Unless there is great stress for survival it is a very difficult path to follow. Migration to a better spot is more sensible and practical. Note human divers also can develop the ability to contract the spleen after persistent deep diving. That and prolonged control of the respiratory center is all humans can accomplish by practice.

Evolution: deep diving adaptations

by David Turell @, Tuesday, March 23, 2021, 19:17 (1339 days ago) @ David Turell

This study shows penguin hemoglobin has evolve to be quite different:

https://phys.org/news/2021-03-penguin-hemoglobin-evolved-oxygen-demands.html

"...new research from the University of Nebraska–Lincoln has shown that the evolution of diving is also in their blood, which optimized its capture and release of oxygen to ensure that penguins wouldn't waste their breath while holding it.

"Relative to land-dwelling birds, penguin blood is known to contain more hemoglobin: the protein that picks up oxygen from the lungs and transports it through the bloodstream before dropping it off at various tissues. That abundance could partly explain the underwater proficiency of, say, the emperor penguin, which dives deeper than any bird and has been documented holding its breath for more than 30 minutes while preying on krill, fish and squid.

***

"Answering those questions meant sketching in the genetic blueprints of two ancient hemoglobins. One belonged to the common ancestor of all penguin species, which began branching from that ancestor about 20 million years ago. The other, dating back roughly 60 million years, resided in the common ancestor of penguins and their closest non-diving relatives—albatrosses, shearwaters and other flying seabirds. The thinking was simple: Because one hemoglobin originated before the emergence of diving in the lineage, and the other after, any major differences between the two would implicate them as important to the evolution of diving in penguins.

***

"They found that the hemoglobin from the common ancestor of penguins captured oxygen more readily than did the version present in the blood of the older, non-diving ancestor. That stronger affinity for oxygen would mean less chance of leaving behind traces in the lungs, an especially vital issue among semi-aquatic birds needing to make the most of a single breath while hunting or traveling underwater.

"Unfortunately, the very strength of that affinity can present difficulties when hemoglobin arrives at tissues starved for the oxygen it's carrying.

"'Having a greater hemoglobin-oxygen affinity sort of acts like a stronger magnet to pull more oxygen from the lungs," Signore said. "It's great in that context. But then you're at a loss when it's time to let go."

"Any breath-holding benefits gained by picking up extra oxygen, in other words, can be undone if the hemoglobin struggles to relax its iron-clad grip and release its prized cargo. The probability that it will is dictated in part by acidity and carbon dioxide in the blood. Higher levels of either make hemoglobins more likely to loosen up.

"As Storz and Signore expected, the hemoglobin of the recent penguin ancestor was more sensitive to its surrounding pH, with its biochemical grip on oxygen loosening more in response to elevated acidity. And that, Signore said, made the hemoglobin more biochemically attuned to the exertion and oxygen needs of the tissues it served.

"'It really is a beautiful system, because tissues that are working hard are becoming acidic," he said. "They need more oxygen, and hemoglobin's oxygen affinity is able to shift in response to that acidity to provide more oxygen.

"'If pH drops by, say, 0.2 units, the oxygen affinity of penguin hemoglobin is going to decrease by more than would the hemoglobin of their non-diving relatives."

"Together, the findings indicate that as penguins took to the seas, their hemoglobin evolved to maximize both the pick-up and drop-off of available oxygen—especially when it was last inhaled five, or 10, or even 20 minutes earlier."

Comment: When penguins took to water for food, they had to develop webbed feet and other characteristics. My thought is God helped with these designs.

Evolution: fish to land animals transition

by dhw, Friday, December 04, 2020, 12:35 (1448 days ago) @ David Turell

DAVID: Again a weak humanized God devised by your fertile imagination, wandering around from point to point, not sure of how to go forward.

dhw: But the history of evolution is precisely that: it branches out into millions of life forms and econiches and natural wonders, 99% of which have died out and had no connection with humans. “Point to point”. You cannot explain why your God would have directly designed them all if his goal was humans. You claim that they were all part of that goal but can find no connection yourself, and you come up with the idea that his powers were limited so he “had to design them” before he could design us. Why is this limitation of his powers any “weaker” than a God who experiments to get what he wants, or who learns and gets new ideas as he goes along?

DAVID: As before I believe in a God who knows exactly what he is doing, and if He was forced to evolve us, He recognized His problem and proceeded with evolution. As for the branching, God knew we would reach enormous numbers of us and all the ecosystems provide a necessary food supply, all logically explained before.

What “forced” him to evolve us, and above all, what forced him to evolve [= directly design] millions of life forms that had no connection with us if all he wanted to evolve was us and our food supply? How could ALL the ecosystems, 99% of which had no connection with us, have been necessary for us? Why do you keep ignoring your own statements: “The current huge bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.” “Extinct life has no role in current time.”

DAVID: I don't recognize your illogical complaint at all, from my belief in God. We've covered the point that He either had to evolve us or chose to evolve us. Either way I view him as in charge of creation, and your strange complaint as a criticism of God's methodology. The 99% simply represent evolution from bacteria to us and the huge current bush is food supply for a huge human population and is developed from all the previous 99% branching.

Why did he “have to” or “choose to” evolve [= directly design] millions of life forms that had no connection with us in order to evolve [= directly design] all the different hominins and homos that led to us? We have not covered it. That is the illogical interpretation of your God’s purpose and methodology that you insist is the only possible one, even though you acknowledge the logic of all the alternatives I have suggested. You have demolished the food supply arguments yourself in the statements bolded above.

Evolution: primate vision same for 55 million years

by David Turell @, Friday, December 04, 2020, 16:03 (1448 days ago) @ dhw

From the tiny mouse lemur to us, the visual system is the same in size in the brains of all:

https://www.sciencedaily.com/releases/2020/12/201203144156.htm

"Primates process visual information similar to pixels in a digital camera, using small computing units located in their visual cortex. Scientists of the University of Geneva have investigated whether these computational units scale across the large differences in size between primates. The gray mouse lemur is one of the smallest of them and his visual processing units reveals that all primates, independent of their body size, have an equivalent computational units.

***

"The gray mouse lemur (Microcebus murinus) from Madagascar is one of the smallest of them and weighs barely 60 grams. In a study published in the journal Current Biology, the scientists compared the visual system of the mouse lemur to that of other primates and found that the size of these visual processing units is identical in all primates, independent of their body size. As the mouse lemur is a very special species, sharing many traits with the very first primates that evolved 55 Million years ago, these results suggest an incredible preservation of our visual system and highlight the importance of vision in our daily lives and that of our ancestors in the distant past.

***

"The team made a surprising discovery: not only was the basic processing unit almost identical in size in the 60-gram mouse lemur, as in larger monkeys such as macaques weighing about seven kilograms, or even larger primates such as us humans.

***

"They also found that the way the units are arranged across the brain was totally indistinguishable, following the same rules with mathematical precision. The researchers also found that the number of nerve cells per visual unit was almost identical in all primates studied so far. Göttingen Max Planck physicist Fred Wolf who had pointed out that universal mathematical principles may rule visual system evolution ten years ago is still amazed by the degree of invariance: "55 Million years of separation on different continents is a very long evolutionary path to travel. I would have expected some mix of general similarity and characteristic differences between species in these neural modules. But the fact of the matter simply is: It is practically impossible to tell them apart." (my bold)

***

"...the discovery by UNIGE scientists and their collaborators reveals that this part of the visual system cannot be compressed or miniaturized. A fixed number of neurons seems therefore to be required to ensure its optimal functionality. "For tiny primate species with excellent vision, such as the mouse lemur, the visual system must hence be relatively large, compared to the size of their entire brain, to accommodate a sufficient number of visual processing units," says the Geneva-based neuroscientist. Indeed, more than a fifth of the cerebral cortex of this lemur is dedicated to visual processing. In comparison, the neural circuits related to vision occupy barely 3% of the human brain."

Comment: Note the bold. A perfect system with no changes and the surprise of a researcher noted in bold. No changing mutations implies controlled design.

Evolution: fish to land animals transition

by David Turell @, Friday, December 04, 2020, 18:36 (1448 days ago) @ dhw

DAVID: As before I believe in a God who knows exactly what he is doing, and if He was forced to evolve us, He recognized His problem and proceeded with evolution. As for the branching, God knew we would reach enormous numbers of us and all the ecosystems provide a necessary food supply, all logically explained before.

dhw: What “forced” him to evolve us, and above all, what forced him to evolve [= directly design] millions of life forms that had no connection with us if all he wanted to evolve was us and our food supply? How could ALL the ecosystems, 99% of which had no connection with us, have been necessary for us? Why do you keep ignoring your own statements: “The current huge bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.” “Extinct life has no role in current time.”

Once again you are slicing and dicing evolution into time periods, as if an old period doesn't precede a new period. It is a continuous process from bacteria to now.


DAVID: I don't recognize your illogical complaint at all, from my belief in God. We've covered the point that He either had to evolve us or chose to evolve us. Either way I view him as in charge of creation, and your strange complaint as a criticism of God's methodology. The 99% simply represent evolution from bacteria to us and the huge current bush is food supply for a huge human population and is developed from all the previous 99% branching.

dhw: Why did he “have to” or “choose to” evolve [= directly design] millions of life forms that had no connection with us in order to evolve [= directly design] all the different hominins and homos that led to us? We have not covered it. That is the illogical interpretation of your God’s purpose and methodology that you insist is the only possible one, even though you acknowledge the logic of all the alternatives I have suggested. You have demolished the food supply arguments yourself in the statements bolded above.

I've demolished nothing. God as creator can do anything He wants. He created life and evolved it to reach us. All His choices of action. End of argument from a theistic viewpoint.

Evolution: fish to land animals transition

by dhw, Saturday, December 05, 2020, 07:57 (1448 days ago) @ David Turell

dhw: How could ALL the ecosystems, 99% of which had no connection with us, have been necessary for us? Why do you keep ignoring your own statements: “The current huge bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.” “Extinct life has no role in current time.”

DAVID: Once again you are slicing and dicing evolution into time periods, as if an old period doesn't precede a new period. It is a continuous process from bacteria to now.

Evolution IS divided into time periods, and each period produces its own life forms and econiches and food supplies, and time is continuous, and of course old periods precede new periods. BUT THERE IS NO CONNECTION BETWEEN 99% OF PAST LIFE FORMS/ FOOD SUPPLIES AND PRESENT LIFE FORMS/FOOD SUPPLIES. Please read your own bolded quotes above. Hence it is absurd to argue that all life forms and food supplies were “part of the goal of evolving humans” even though 99% of them had no connection with humans!

DAVID: God as creator can do anything He wants. He created life and evolved it to reach us. All His choices of action. End of argument from a theistic viewpoint.

Yes, if God exists, he can do anything he wants, yes he evolved life, yes it reached us. But that does not mean he directly designed every life form, and if he did, it does not mean that every life form was “part of the goal of evolving humans” even though 99% of them had no connection with humans! You keep using vague generalizations in order to avoid facing up to the fact that that your interpretation of his goal and his methodology makes no sense. But you are determined to stick to it and to keep pretending that it is logical by leaving out those parts of your theory that make it illogical. Time to end this game?

Evolution: fish to land animals transition

by David Turell @, Saturday, December 05, 2020, 16:03 (1447 days ago) @ dhw

dhw: How could ALL the ecosystems, 99% of which had no connection with us, have been necessary for us? Why do you keep ignoring your own statements: “The current huge bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.” “Extinct life has no role in current time.”

DAVID: Once again you are slicing and dicing evolution into time periods, as if an old period doesn't precede a new period. It is a continuous process from bacteria to now.

dhw: Evolution IS divided into time periods, and each period produces its own life forms and econiches and food supplies, and time is continuous, and of course old periods precede new periods. BUT THERE IS NO CONNECTION BETWEEN 99% OF PAST LIFE FORMS/ FOOD SUPPLIES AND PRESENT LIFE FORMS/FOOD SUPPLIES. Please read your own bolded quotes above. Hence it is absurd to argue that all life forms and food supplies were “part of the goal of evolving humans” even though 99% of them had no connection with humans!

You interpret in a distorted way as you read my words: the key to the interpretation is this from your bold of my words “Extinct life has no role in current time.” Is that true or not? I say not, but the true issue is the connection is common descent!!! Which obviously is an indirect role, but a real role, and a relationship. You cannot get from bacteria to humans without steady modification. But then again you refuses to accept the idea God chose to evolve us.


DAVID: God as creator can do anything He wants. He created life and evolved it to reach us. All His choices of action. End of argument from a theistic viewpoint.

dhw: Yes, if God exists, he can do anything he wants, yes he evolved life, yes it reached us. But that does not mean he directly designed every life form, and if he did, it does not mean that every life form was “part of the goal of evolving humans” even though 99% of them had no connection with humans! You keep using vague generalizations in order to avoid facing up to the fact that that your interpretation of his goal and his methodology makes no sense. But you are determined to stick to it and to keep pretending that it is logical by leaving out those parts of your theory that make it illogical. Time to end this game?

I will stick to the belief God is the designer of all forms of life. Your imagined view of God does not follow the rules I follow in thinking about Him. I have an established belief you cannot shake. It is not a game for me. Perhaps you come from a point of view where gaming is important. I got to my position from agnosticism well before discovering Adler solidified it. With our differing thought patterns, we will never agree.

Evolution: fish to land animals transition

by dhw, Sunday, December 06, 2020, 12:42 (1446 days ago) @ David Turell

dhw: How could ALL the ecosystems, 99% of which had no connection with us, have been necessary for us? Why do you keep ignoring your own statements: “The current huge bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.” “Extinct life has no role in current time.”

DAVID: You interpret in a distorted way as you read my words: the key to the interpretation is this from your bold of my words “Extinct life has no role in current time.” Is that true or not? I say not…

This and the other quotes were clear statements – not stated as subjects for discussion. And the block capitals (NOW and PAST) were yours, not mine. There is no distortion, and your statements make perfect sense, since you cannot find any direct connection between 99% of evolution’s branches (life forms plus food supplies) and the branch that produced H. sapiens plus food supply.

DAVID: …but the true issue is the connection is common descent!!! Which obviously is an indirect role, but a real role, and a relationship. You cannot get from bacteria to humans without steady modification. But then again you refuses to accept the idea God chose to evolve us.

With my theist hat on, I have no problem with the theory that your God chose to evolve us. But “evolve” according to you means he directly designed every organism, and every hominin and homo that preceded us. You cannot get from bacteria to the brontosaurus without vast numbers of modifications. You have agreed that the brontosaurus has no direct connection to us. Multiply that by millions of organisms, econiches, strategies and natural wonders which you claim your God directly designed, add on the fact that 99% of them had no connection with humans, and you are left with the problem you continually ignore: why would your God directly design millions of life forms and food supplies that had no connection with humans if the only branch of life’s bush that he WANTED to design was the one leading from bacteria to humans and their food supply? Your bolded comments above hammer the point home, and the rest of your post continues to dodge the issue.

Evolution: fish to land animals transition

by David Turell @, Sunday, December 06, 2020, 15:31 (1446 days ago) @ dhw

dhw: How could ALL the ecosystems, 99% of which had no connection with us, have been necessary for us? Why do you keep ignoring your own statements: “The current huge bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.” “Extinct life has no role in current time.”

DAVID: You interpret in a distorted way as you read my words: the key to the interpretation is this from your bold of my words “Extinct life has no role in current time.” Is that true or not? I say not…

dhw: This and the other quotes were clear statements – not stated as subjects for discussion. And the block capitals (NOW and PAST) were yours, not mine. There is no distortion, and your statements make perfect sense, since you cannot find any direct connection between 99% of evolution’s branches (life forms plus food supplies) and the branch that produced H. sapiens plus food supply.

DAVID: …but the true issue is the connection in common descent!!! Which obviously is an indirect role, but a real role, and a relationship. You cannot get from bacteria to humans without steady modification. But then again you refuses to accept the idea God chose to evolve us.

dhw: With my theist hat on, I have no problem with the theory that your God chose to evolve us. But “evolve” according to you means he directly designed every organism, and every hominin and homo that preceded us. You cannot get from bacteria to the brontosaurus without vast numbers of modifications. You have agreed that the brontosaurus has no direct connection to us. Multiply that by millions of organisms, econiches, strategies and natural wonders which you claim your God directly designed, add on the fact that 99% of them had no connection with humans, and you are left with the problem you continually ignore: why would your God directly design millions of life forms and food supplies that had no connection with humans if the only branch of life’s bush that he WANTED to design was the one leading from bacteria to humans and their food supply? Your bolded comments above hammer the point home, and the rest of your post continues to dodge the issue.

You have no coherent development of your acceptance that God chose to evolve us. I think He designed all stages with mountains of evidence that design is required. You seem to deny design, so how did He directly do it? As for desiring humans Adler offers very strong philosophic evidence. For the necessary food supply, you agree it is required. Early in evolution small bush, small food supply. Now huge bush huge human population, all logical. I don't ignore the bold. It is your strawman. The definition of evolution is development from the simple to the complex in stages! You have agreed above God chose to evolve us. Our only difference I know of is I think He directly designed everything and you drag in cell intelligence provided by God. That is still an acceptance of God in charge, just a step removed from control. Why you need that I have no idea, but it diminishes God's direct control, and perhaps it is your agnostic way of diminishing God's personality and control of purpose.

Evolution: fish to land animals transition

by dhw, Monday, December 07, 2020, 11:32 (1445 days ago) @ David Turell

DAVID: You have no coherent development of your acceptance that God chose to evolve us.

Not just us! Every species in life's history! And I have several “coherent developments” (see my “numerous theistic theories" below), each of which you have agreed are logical. The only theory on offer that has no coherent development is your own: God’s purpose was to “evolve” H. sapiens (plus food supply) by directly designing him stage by stage, and therefore he directly designed millions of organisms (plus food supplies), 99% of which had no connection with humans.

DAVID: I think He designed all stages with mountains of evidence that design is required. You seem to deny design, so how did He directly do it?

I have never denied design, but I strongly doubt the incoherent interpretation of “evolution/design” bolded above. Please stop dodging.

DAVID: As for desiring humans Adler offers very strong philosophic evidence.

No problem. The problem with your own theory is bolded above. Please stop dodging.

DAVID: For the necessary food supply, you agree it is required. Early in evolution small bush, small food supply. Now huge bush huge human population, all logical.

Food is required for ALL life forms. But in your own words: “The current huge bush of food is NOW for humans NOW. There were smaller bushes in the PAST for PAST forms.” “Extinct life has no role in current time.” Please stop dodging.

DAVID: I don't ignore the bold. It is your strawman.

Then please explain the logic behind the theory bolded above.

DAVID: The definition of evolution is development from the simple to the complex in stages!

I am not denying evolution. I am challenging your illogical interpretation of it as bolded above. Please stop dodging.

DAVID: You have agreed above God chose to evolve us.

I have agreed that if God exists, he chose evolution as the way to produce every single life form. Not just us! See the above bold for what I disagree with. Please stop dodging.

DAVID: Our only difference I know of is I think He directly designed everything and you drag in cell intelligence provided by God.

The difference between us is the problem that you continue to dodge and which I will now repeat: if God’s goal was to evolve H. sapiens (= directly design him stage by stage) plus food supply, why did he directly design millions of now extinct organisms and food supplies, 99% of which had no connection with humans? I have offered you numerous theistic theories, including two that allow for sapiens as the goal (experimentation, or new ideas as he goes along), and a theory (your God’s invention of autonomous cellular intelligence) that explains the vast variety of life forms NOT designed for the sole purpose of designing humans.

DAVID: That is still an acceptance of God in charge, just a step removed from control. Why you need that I have no idea, but it diminishes God's direct control, and perhaps it is your agnostic way of diminishing God's personality and control of purpose.

There is no diminution if your God CHOSE not to control evolution but to create an ever changing world full of surprises and wonders, including all the surprises and wonders produced by H. sapiens – whose autonomy you acknowledge. Not one of your comments makes any attempt to solve the logical problem that forms the bolded issue between us. I wish you would simply acknowledge, as you have done in the past, that you have no idea why he would have chosen the method you have chosen for him to fulfil the purpose you have chosen for him. Then at last we could move on.

Evolution: fish to land animals transition

by David Turell @, Monday, December 07, 2020, 15:38 (1445 days ago) @ dhw

DAVID: You have no coherent development of your acceptance that God chose to evolve us.

dhw: Not just us! Every species in life's history! And I have several “coherent developments” (see my “numerous theistic theories" below), each of which you have agreed are logical. The only theory on offer that has no coherent development is your own: God’s purpose was to “evolve” H. sapiens (plus food supply) by directly designing him stage by stage, and therefore he directly designed millions of organisms (plus food supplies), 99% of which had no connection with humans.

Totally incoherent reply. You bold simply describes evolution which God chose to produce.>

DAVID: I don't ignore the bold. It is your strawman.

dhw: Then please explain the logic behind the theory bolded above.

God chose to evolve us. How is that illogical? You call it illogical with no real explanation of your thinking. You come across as criticizing God's method.


DAVID: You have agreed above God chose to evolve us.

dhw: I have agreed that if God exists, he chose evolution as the way to produce every single life form. Not just us! See the above bold for what I disagree with. Please stop dodging.

I dodge nothing. The bold in your statement means to me God designed each form. You object to that interpretation and appear to believe if God started evolution it somehow ran into more complexity on its own. I believe in a God in full control.

dhw: The difference between us is the problem that you continue to dodge and which I will now repeat: if God’s goal was to evolve H. sapiens (= directly design him stage by stage) plus food supply, why did he directly design millions of now extinct organisms and food supplies, 99% of which had no connection with humans? I have offered you numerous theistic theories, including two that allow for sapiens as the goal (experimentation, or new ideas as he goes along), and a theory (your God’s invention of autonomous cellular intelligence) that explains the vast variety of life forms NOT designed for the sole purpose of designing humans.

But I've presented Adler's book describing humans as so unusual they have to be God's purpose. I'll stay with that exposition. We are God's final goal. The above theorizes a God in secondhand control, as you usually humanize Him.


DAVID: That is still an acceptance of God in charge, just a step removed from control. Why you need that I have no idea, but it diminishes God's direct control, and perhaps it is your agnostic way of diminishing God's personality and control of purpose.

dhw: There is no diminution if your God CHOSE not to control evolution but to create an ever changing world full of surprises and wonders, including all the surprises and wonders produced by H. sapiens – whose autonomy you acknowledge. Not one of your comments makes any attempt to solve the logical problem that forms the bolded issue between us. I wish you would simply acknowledge, as you have done in the past, that you have no idea why he would have chosen the method you have chosen for him to fulfil the purpose you have chosen for him. Then at last we could move on.

There is no logical problem between us. My logic is not your logic. That gulf will never close. I've given guesses as to why God chose to evolve us, but the history of reality tells me He made that choice. And I've noted He choses to evolve everything: the universe, the Milky Way, the Earth, and life. That consistency tells me He prefers to evolve toward each of His goals, after creating each stage..

Evolution: fish to land animals transition

by dhw, Tuesday, December 08, 2020, 14:06 (1444 days ago) @ David Turell

DAVID: You have no coherent development of your acceptance that God chose to evolve us.

dhw: Not just us! Every species in life's history! And I have several “coherent developments” (see my “numerous theistic theories" below), each of which you have agreed are logical. The only theory on offer that has no coherent development is your own: God’s purpose was to “evolve” H. sapiens (plus food supply) by directly designing him stage by stage, and therefore he directly designed millions of organisms (plus food supplies), 99% of which had no connection with humans.

DAVID: Totally incoherent reply. You bold simply describes evolution which God chose to produce.
And
DAVID: God chose to evolve us. How is that illogical? You call it illogical with no real explanation of your thinking. You come across as criticizing God's method.

If your God exists, he chose evolution as his method of producing the universe, planet Earth, and EVERY life form, not just us. Nothing illogical. Evolution has produced millions of life forms. Nothing illogical. It is perfectly logical for a theist like yourself to theorize that God designed every life form out of preceding life forms (= common descent). One of those life forms is humans. Nothing illogical. Humans are unique, and God may have deliberately designed them too. Nothing illogical. So far so good. But now we come to the illogical parts of your theory: 1) if God’s ONLY PURPOSE was to create H. sapiens and his food supply, why would he have chosen to directly design millions of life forms and food supplies which died out long before the first humans came on the scene and which had no connection with humans? 2) How could millions of life forms and food supplies that had no connection with humans have been “part of the goal of evolving humans?

In fairness, you have tried to find an explanation: that your God is limited in his powers. He was perfectly capable of directly designing every other form of life, but he was incapable of directly designing H. sapiens. Unfortunately, this still doesn’t explain WHY he would have directly designed all those millions of life forms (plus food supplies) that had no connection with humans if he only wanted H. sapiens (plus food supply), but at least this weaker form of God shows that you acknowledge the problem raised by your theory. The rest of your post offers no answer to the two questions above. I suggest that you stick with your occasional response: namely, you have no idea why he would have chosen the theoretical means of fulfilling the theoretical purpose bolded at the start of this post. We could leave it at that.

Evolution: fish to land animals transition

by David Turell @, Tuesday, December 08, 2020, 21:54 (1444 days ago) @ dhw
edited by David Turell, Tuesday, December 08, 2020, 22:01

DAVID: Totally incoherent reply. You bold simply describes evolution which God chose to produce.
And
DAVID: God chose to evolve us. How is that illogical? You call it illogical with no real explanation of your thinking. You come across as criticizing God's method.

dhw: If your God exists, he chose evolution as his method of producing the universe, planet Earth, and EVERY life form, not just us. Nothing illogical. Evolution has produced millions of life forms. Nothing illogical. It is perfectly logical for a theist like yourself to theorize that God designed every life form out of preceding life forms (= common descent). One of those life forms is humans. Nothing illogical. Humans are unique, and God may have deliberately designed them too. Nothing illogical. So far so good. But now we come to the illogical parts of your theory: 1) if God’s ONLY PURPOSE was to create H. sapiens and his food supply, why would he have chosen to directly design millions of life forms and food supplies which died out long before the first humans came on the scene and which had no connection with humans? 2) How could millions of life forms and food supplies that had no connection with humans have been “part of the goal of evolving humans?

In fairness, you have tried to find an explanation: that your God is limited in his powers. He was perfectly capable of directly designing every other form of life, but he was incapable of directly designing H. sapiens. Unfortunately, this still doesn’t explain WHY he would have directly designed all those millions of life forms (plus food supplies) that had no connection with humans if he only wanted H. sapiens (plus food supply), but at least this weaker form of God shows that you acknowledge the problem raised by your theory. The rest of your post offers no answer to the two questions above. I suggest that you stick with your occasional response: namely, you have no idea why he would have chosen the theoretical means of fulfilling the theoretical purpose bolded at the start of this post. We could leave it at that.

You have described your version of a God with tunnel vision. In your view all God is supposed to see is a final version of humans with enough consciousness to be a very different form of organism. Your quasi-theistic attempts at imagining God are nothing like mine. I have analyzed God as preferring to evolve His goals/ purposes, and you have not disagreed. You are correct. I have no idea why He uses that method. Perhaps He must. So what! As you observe we will never agree on this point. There is no question He wanted us to appear.

Evolution: fish to land animals transition

by dhw, Wednesday, December 09, 2020, 13:33 (1443 days ago) @ David Turell

dhw: If your God exists, he chose evolution as his method of producing the universe, planet Earth, and EVERY life form, not just us. Nothing illogical. Evolution has produced millions of life forms. Nothing illogical. It is perfectly logical for a theist like yourself to theorize that God designed every life form out of preceding life forms (= common descent). One of those life forms is humans. Nothing illogical. Humans are unique, and God may have deliberately designed them too. Nothing illogical. So far so good. But now we come to the illogical parts of your theory: 1) if God’s ONLY PURPOSE was to create H. sapiens and his food supply, why would he have chosen to directly design millions of life forms and food supplies which died out long before the first humans came on the scene and which had no connection with humans? 2) How could millions of life forms and food supplies that had no connection with humans have been “part of the goal of evolving humans?” […]
I suggest that you stick with your occasional response: namely, you have no idea why he would have chosen the theoretical means of fulfilling the theoretical purpose bolded at the start of this post. We could leave it at that.

DAVID: You have described your version of a God with tunnel vision.

I have not described any version of God. I have listed those of your premises which I find logical, and those of your premises which illustrate your own illogical tunnel vision. You have not answered the two questions that are the points at issue.

DAVID: In your view all God is supposed to see is a final version of humans with enough consciousness to be a very different form of organism. Your quasi-theistic attempts at imagining God are nothing like mine.

I have not said a word about what God is supposed to see. I have asked two questions concerning your own version of what God did to achieve his one and only purpose.

DAVID: I have analyzed God as preferring to evolve His goals/ purposes, and you have not disagreed.

Of course not. If God exists, and since I believe evolution happened, it would be idiotic to argue that he did not use evolution to “evolve his goals/purposes”, though part of your problem has always been that you limit his goals/purposes to the single one of producing H. sapiens and his food supply, and therefore cannot explain why he would have directly designed so many life forms that have no connection with H. sapiens and his food supply.

DAVID: You are correct. I have no idea why He uses that method.

Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.

Evolution: fish to land animals transition

by David Turell @, Wednesday, December 09, 2020, 15:14 (1443 days ago) @ dhw

dhw: If your God exists, he chose evolution as his method of producing the universe, planet Earth, and EVERY life form, not just us. Nothing illogical. Evolution has produced millions of life forms. Nothing illogical. It is perfectly logical for a theist like yourself to theorize that God designed every life form out of preceding life forms (= common descent). One of those life forms is humans. Nothing illogical. Humans are unique, and God may have deliberately designed them too. Nothing illogical. So far so good. But now we come to the illogical parts of your theory: 1) if God’s ONLY PURPOSE was to create H. sapiens and his food supply, why would he have chosen to directly design millions of life forms and food supplies which died out long before the first humans came on the scene and which had no connection with humans? 2) How could millions of life forms and food supplies that had no connection with humans have been “part of the goal of evolving humans?” […]
I suggest that you stick with your occasional response: namely, you have no idea why he would have chosen the theoretical means of fulfilling the theoretical purpose bolded at the start of this post. We could leave it at that.

DAVID: You have described your version of a God with tunnel vision.

dhw: I have not described any version of God. I have listed those of your premises which I find logical, and those of your premises which illustrate your own illogical tunnel vision. You have not answered the two questions that are the points at issue.

I can't answer them because I find your reasoning behind the points totally illogical from my point of view. You refuse to accept the answers I have given which shows how restricted your view is.


DAVID: In your view all God is supposed to see is a final version of humans with enough consciousness to be a very different form of organism. Your quasi-theistic attempts at imagining God are nothing like mine.

dhw: I have not said a word about what God is supposed to see. I have asked two questions concerning your own version of what God did to achieve his one and only purpose.

And I've answered. History tells us God chose to evolve us.


DAVID: I have analyzed God as preferring to evolve His goals/ purposes, and you have not disagreed.

dhw: Of course not. If God exists, and since I believe evolution happened, it would be idiotic to argue that he did not use evolution to “evolve his goals/purposes”, though part of your problem has always been that you limit his goals/purposes to the single one of producing H. sapiens and his food supply, and therefore cannot explain why he would have directly designed so many life forms that have no connection with H. sapiens and his food supply.

Same distortion. You accept evolution and then state God should not have followed the course of action in evolution, directly implying He should simply have created us without all the beginning organisms.


DAVID: You are correct. I have no idea why He uses that method.

dhw: Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.

Fine

Evolution: fish to land animals transition

by dhw, Thursday, December 10, 2020, 11:55 (1442 days ago) @ David Turell

dhw: 1) if God’s ONLY PURPOSE was to create H. sapiens and his food supply, why would he have chosen to directly design millions of life forms and food supplies which died out long before the first humans came on the scene and which had no connection with humans? 2) How could millions of life forms and food supplies that had no connection with humans have been “part of the goal of evolving humans?” […]
I suggest that you stick with your occasional response: namely, you have no idea why he would have chosen the theoretical means of fulfilling the theoretical purpose bolded at the start of this post. We could leave it at that.

DAVID: I can't answer them because I find your reasoning behind the points totally illogical from my point of view. You refuse to accept the answers I have given which shows how restricted your view is.
DAVID: You are correct. I have no idea why He uses that method.
dhw: Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.
DAVID: Fine
dhw: :-)

DAVID: And I've answered. History tells us God chose to evolve us.
DAVID: You are correct. I have no idea why He uses that method.
dhw: Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.
DAVID: Fine
dhw: :-)


DAVID: Same distortion. You accept evolution and then state God should not have followed the course of action in evolution, directly implying He should simply have created us without all the beginning organisms.
DAVID: You are correct. I have no idea why He uses that method.
dhw: Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.
DAVID: Fine
dhw: :-)

Evolution: fish to land animals transition

by David Turell @, Thursday, December 10, 2020, 18:00 (1442 days ago) @ dhw

dhw: 1) if God’s ONLY PURPOSE was to create H. sapiens and his food supply, why would he have chosen to directly design millions of life forms and food supplies which died out long before the first humans came on the scene and which had no connection with humans? 2) How could millions of life forms and food supplies that had no connection with humans have been “part of the goal of evolving humans?” […]
I suggest that you stick with your occasional response: namely, you have no idea why he would have chosen the theoretical means of fulfilling the theoretical purpose bolded at the start of this post. We could leave it at that.

DAVID: I can't answer them because I find your reasoning behind the points totally illogical from my point of view. You refuse to accept the answers I have given which shows how restricted your view is.
DAVID: You are correct. I have no idea why He uses that method.
dhw: Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.
DAVID: Fine
dhw: :-)

DAVID: And I've answered. History tells us God chose to evolve us.
DAVID: You are correct. I have no idea why He uses that method.
dhw: Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.
DAVID: Fine
dhw: :-)


DAVID: Same distortion. You accept evolution and then state God should not have followed the course of action in evolution, directly implying He should simply have created us without all the beginning organisms.
DAVID: You are correct. I have no idea why He uses that method.
dhw: Thank you. That is the acknowledgement I asked for. I suggest we leave it at that.
DAVID: Fine
dhw: :-)

;-)

Evolution: neutral theory

by David Turell @, Tuesday, December 08, 2020, 23:56 (1444 days ago) @ dhw

An explanation:

read://https_www.quantamagazine.org/?url=https%3A%2F%2Fwww.quantamagazine.org%2Fhow-neu...

"It is tempting to think the cats’ blueness was tied to some flaw that left them unable to compete with their bright orange kin. But it’s more likely their bizarre coats had nothing to do with their extinction; it was simply bad luck that the color arose in a small population that continued to shrink.

"This kind of chance evolution is the purview of neutral theory, the historically controversial idea that “survival of the fittest” isn’t the only, or even the most common, way that species change, split or disappear. Simple as the proposition sounds, its consequences for genetics, evolution, ecology and even disciplines outside of biology have been sweeping.

***

"In 1968, the renowned geneticist Motoo Kimura proposed an alternative explanation, now called neutral theory. Kimura posited that most of the variation between organisms is neither advantageous nor disadvantageous. Consequently, most of the variety we see isn’t a product of the hidden hand of selection but rather of luck.

***

"Kimura’s neutral theory of molecular evolution sparked debate because it seemed to water down the influence of selection. But the genomics revolution of the late 20th century and widespread DNA sequencing confirmed that Kimura was right; swapping out one letter for another in a gene’s code usually has little effect.

"Ever since, neutral theory has been the default assumption (or null hypothesis) in genetics. “If you want to show that a given variant in a DNA sequence is under selection, you first have to really show that it can’t be just explained by neutrality,” Leroi said.

***

“'Kimura never said everything is neutral,” she said. What matters is how much neutral forces have shaped biodiversity. And that depends largely on the size of the group you’re looking at.

"Imagine a population of 10 birds: one red, one green and all the rest brown. These colors aren’t harmful or helpful, so all the birds have the same chance of reproducing. Then a tornado kills six of the brown birds, purely by chance. Now half the population is brown, a quarter is red and a quarter is green. A random event caused a major shift in diversity. That’s genetic drift.

***

"In Hubbell’s 2001 book, The Unified Neutral Theory of Biodiversity and Biogeography, he argued that many species can occupy any given niche, and whether they hold it is ultimately driven by chance. Whole ecosystems evolve through random “ecological drift,” much as genetic drift influenced the frequency of traits.

"That may sound un-Darwinian — and many biologists do consider it provocative. But neutral theorists take the position that, to an individual organism, the species of its competitors don’t matter: A robin competes with other robins for worms as much as it does with blackbirds, and every tree in a forest vies with the rest for sunlight. As a result, random events can rule over which species persist.

"In studies, this neutral theory has generally not been very successful at predicting the composition of ecosystems, but many ecologists continue to find it useful as a null hypothesis for sharpening their analyses of niche-based diversity models. And many consider the idea as one end of a spectrum, since both selective and neutral forces are always at work.

***

"Whether we like to admit it or not, random forces are always subtly influencing the world. Neutral theory provides a framework for making these forces known and measurable. Leroi believes it should continue to expand its influence “until it becomes an integral part of explaining diversity wherever we see it in the world, be it in the supermarket or a tropical rainforest.'”

Comment: It seems to me since natural selection acts only on what it is given to act upon that the theories are compatible. It doesn't explain speciation but it dos explain variations that can appear.

Evolution: neutral theory

by dhw, Wednesday, December 09, 2020, 14:15 (1443 days ago) @ David Turell

QUOTE: Kimura posited that most of the variation between organisms is neither advantageous nor disadvantageous. Consequently, most of the variety we see isn’t a product of the hidden hand of selection but rather of luck.

QUOTE: "This kind of chance evolution is the purview of neutral theory, the historically controversial idea that “survival of the fittest” isn’t the only, or even the most common, way that species change, split or disappear.”

DAVID: It seems to me since natural selection acts only on what it is given to act upon that the theories are compatible. It doesn't explain speciation but it dos explain variations that can appear.

The first quote only mentions variations, but the whole article lays emphasis on luck and randomness, and the second quote simply creates a false dichotomy, which can be applied to speciation as well as variation. Randomness creates different conditions (unless you believe your God organizes every change), but the process of adaptation is not random and is geared to the ability (or inability) to survive in those conditions! In my own theory, this also encompasses IMPROVING the ability to survive (innovation). And so random conditions and “survival of the fittest” are partners in the process, not alternatives, and variations survive because they are advantageous in whatever conditions have randomly arisen. The interplay is well illustrated if we slightly change this example:

QUOTE: "Imagine a population of 10 birds: one red, one green and all the rest brown. These colors aren’t harmful or helpful, so all the birds have the same chance of reproducing. Then a tornado kills six of the brown birds, purely by chance. Now half the population is brown, a quarter is red and a quarter is green. A random event caused a major shift in diversity. That’s genetic drift.

This is a special instance of variation, but a far more likely example would be an environment in which brown provides better camouflage against predators. The conditions may be a matter of luck, but the survival of the brown birds is not random. The “hidden hand of selection” is completely out in the open: the colour improves (is advantageous for) the brown birds’ chances of survival. Again, we have luck, advantage and the survival principle working together.

Evolution: neutral theory

by David Turell @, Wednesday, December 09, 2020, 15:58 (1443 days ago) @ dhw

QUOTE: Kimura posited that most of the variation between organisms is neither advantageous nor disadvantageous. Consequently, most of the variety we see isn’t a product of the hidden hand of selection but rather of luck.

QUOTE: "This kind of chance evolution is the purview of neutral theory, the historically controversial idea that “survival of the fittest” isn’t the only, or even the most common, way that species change, split or disappear.”

DAVID: It seems to me since natural selection acts only on what it is given to act upon that the theories are compatible. It doesn't explain speciation but it dos explain variations that can appear.

dhw: The first quote only mentions variations, but the whole article lays emphasis on luck and randomness, and the second quote simply creates a false dichotomy, which can be applied to speciation as well as variation. Randomness creates different conditions (unless you believe your God organizes every change), but the process of adaptation is not random and is geared to the ability (or inability) to survive in those conditions! In my own theory, this also encompasses IMPROVING the ability to survive (innovation). And so random conditions and “survival of the fittest” are partners in the process, not alternatives, and variations survive because they are advantageous in whatever conditions have randomly arisen. The interplay is well illustrated if we slightly change this example:

QUOTE: "Imagine a population of 10 birds: one red, one green and all the rest brown. These colors aren’t harmful or helpful, so all the birds have the same chance of reproducing. Then a tornado kills six of the brown birds, purely by chance. Now half the population is brown, a quarter is red and a quarter is green. A random event caused a major shift in diversity. That’s genetic drift.

dhw: This is a special instance of variation, but a far more likely example would be an environment in which brown provides better camouflage against predators. The conditions may be a matter of luck, but the survival of the brown birds is not random. The “hidden hand of selection” is completely out in the open: the colour improves (is advantageous for) the brown birds’ chances of survival. Again, we have luck, advantage and the survival principle working together.

All good theories, but neutral theory and genetic drift theory don't tell us how speciation happens. Thoughts about a designer still apply .

Evolution: Theoretical junk protein

by David Turell @, Wednesday, December 09, 2020, 18:55 (1443 days ago) @ David Turell

Seems to be a replacement for junk DNA to try to support Darwin theory:

https://phys.org/news/2020-12-simple-evolution-useless-complexity.html

"A new study at the University of Chicago has shown that elaborate protein structures accumulate over deep time even when they serve no purpose, because a universal biochemical property and the genetic code force natural selection to preserve them.

"Most proteins in our cells form specific complexes with other proteins, a process called multimerization. Like other kinds of complexity in biology, multimers are usually thought to persist over evolutionary time because they confer some functional benefit that is favored by natural selection.

"'How complexity evolves is one of the great questions of evolutionary biology," said senior author Joseph Thornton, Ph.D., professor of human genetics and ecology and evolution at the University of Chicago. "The classic explanation is that elaborate structures must exist because they confer some functional benefit on the organism, so natural selection drives ever-increasing states of complexity. Clearly in some cases complexity is adaptive, like the evolution of the eye: complex eyes see better than simple ones. But at the molecular level, we found that there are other simple mechanisms that drive the build-up of complexity.

***

"Once a protein evolves to multimerize, the parts that form the interface can accumulate mutations that would be deleterious if the protein were in the solo state, so long as they can be tolerated in the multimer. Purifying selection then entrenches the complex form, preventing a return to the solo state.

"The researchers showed that a simple and universal rule of biochemistry underlies entrenchment. Proteins are made up of amino acids, which may be water soluble, or hydrophobic, meaning they dissolve easily in oil but not water. Usually, proteins fold so the water-soluble amino acids are on the outside and the hydrophobic amino acids are on the inside. Mutations that make a protein's surface more oil soluble impair its folding, so purifying selection removes them if they occur in solo proteins.

"If the protein evolves to multimerize, however, those hydrophobic amino acids on the interface surface are hidden from water, and become invisible to purifying selection. The multimer is then entrenched, because returning to the solo state would expose the now-oil-soluble and deleterious interface.

"This "hydrophobic ratchet" appears to be universal. The researchers analyzed a massive database of protein structures, including hundreds of dimers and related solo proteins, and found that the vast majority of interfaces have become so hydrophobic that the dimeric form is deeply entrenched.

"This mechanism, operating on thousands of proteins over hundreds of millions of years, could drive the gradual accumulation of many useless complexes inside cells."

Comment: This is all theoretical. If these useless proteins exist in cells they must be found, and they haven't been as yet.

Evolution: finding new species

by David Turell @, Thursday, February 04, 2021, 18:18 (1386 days ago) @ David Turell
edited by David Turell, Thursday, February 04, 2021, 18:53

a constant event as we search nature and in the fossil beds. Now a new baleen whale who has always been here:

https://www.newscientist.com/article/2266074-a-new-species-of-baleen-whale-has-been-fou...

A small group of whales living in the Gulf of Mexico belong to a new species that has remained undetected for millennia. There are fewer than 100 of them, so they are immediately an endangered species.

The new species belongs to a group called baleen whales, which filter food out of the water and include the largest whale of all, the blue whale. Despite their size, we still haven’t been able to track down how many species of baleen whale there are.

Comment: 99% are gone, but we keep finding new ones like the fossil fish coelacanth many years ago. Here's another:

https://www.sciencenews.org/article/new-tiny-chameleon-species-may-be-world-smallest-re...

Hidden beneath the leaf litter of a northern Malagasy forest lives a chameleon so slight that it could tumble off the tip of your finger. Measuring just under 30 millimeters from snout to tail, the newly described species, Brookesia nana, may be the smallest reptile on Earth, researchers report January 28 in Scientific Reports.

Just two adult specimens, a male and female, are known. The female measures 28.9 millimeters, considerably larger than the 21.6-millimeter-long male. The size difference may have driven the male’s genitalia to be quite large — nearly 20 percent of its body length — to be a better fit to his mate, herpetologist Frank Glaw of the Bavarian State Collection of Zoology in Munich and colleagues suggest.

Dubbed B. nana for its nano size, the species belongs to a genus of at least 13 other small chameleons spread out across the mountainous forests of northern Madagascar. Why B. nana and its cousins shrank to such minuscule proportions remains a mystery, though smallness does have its benefits: There’s some evidence that small chameleons are especially good shots with their ballistic tongues.

In daylight, Brookesia chameleons scour the forest floor, snatching up mites and other small invertebrates, Glaw’s team suspects. At night, the lizards retreat upward, gripping blades of grass or other plants for safety.

Deforestation and habitat degradation threaten B. nana’s future, the researchers say, though the region where the compact chameleons were found was recently designated a protected area by the Malagasy government. The species may soon be listed as critically endangered, the gravest rating made by the International Union for Conservation of Nature.

Comment: Found and endangered all at once. We know species come and go. One obvious attribute of the evolution process is increasing complexity from the beginning, as I've previously noted, but a drive to extreme diversification is obvious. Why? My thought is that God's new various designs guarantee life will survive all sorts of adverse events.

Evolution: fin to limb genes in zebrafish

by David Turell @, Thursday, February 04, 2021, 21:53 (1386 days ago) @ David Turell

Expression does cause limb=like changes:

https://phys.org/news/2021-02-fin-limb-mutations-zebrafish-fins.html

"Unlike tetrapod limbs, which have complex skeletons with many bones that articulate at many joints, zebrafish pectoral fins have a simple endoskeleton that lacks joints. To their surprise, Hawkins and colleagues found mutants that modified their fins into a more limb-like pattern by adding new bones, complete with muscles and joints. These results reveal that the ability to form limb-like structures was present in the common ancestor of tetrapods and teleost fishes and has been retained in a latent state which can be activated by genetic changes. (my bold)

***

"We look at some of the developmental aberrations and ask, can they inform us of the processes that were happening underlying some of these large shifts in evolution," said senior author Matthew P. Harris, Associate Professor of Genetics at Harvard Medical School and Orthopedic Research at Boston Children's Hospital. "And when you see something that shouldn't be there, ever, I mean 400 million years type of never, it's a major finding." (my bold)

***

"Zebrafish belong to the teleost lineage of ray-finned fishes. Teleosts are a diverse lineage of about 30,000 species that includes goldfish, salmon, eels, flounder, clownfish, pufferfish, catfish and zebrafish. There are more teleost species than all birds, mammals, reptiles, and amphibian species combined. Yet, despite the large number of species and wide ranges of shapes, sizes, and habitats, the pectoral fin of teleosts is surprisingly simple and unchanged.

"The fin-to-limb transition in the tetrapod lineage modified and elaborated the ancestral fin to include many bones that articulate end on end. From the same ancestral starting state, teleost fins were reduced and simplified, such that there is no end-on-end articulation, only the side-by-side arrangement of the proximal radials. This structure allowed researchers to determine which aspects of development are uniquely limb and which features are common across teleost and tetrapod fins and limbs.

***

"...they discovered that mutations in the waslb and vav2 genes cause the fin phenotype. This was a surprising finding as these genes have not previously been known to play roles in patterning the body.

"'It was a big question as to how waslb and vav2 were changing fin patterning," said Hawkins. "These genes were not known to interact with any of the very well characterized pathways that guide limb development. However, we found that these mutations cause an increase in the expression of the gene hoxa11b. This gene is very exciting because the Hox genes are in part responsible for patterning the vertebral column as well as the regions of the limb. And the Hox11 genes in particular are required to make the forearm."

***

"Histological analysis revealed that the new bones had muscle attachment, which occurs extensively in limb bones, but not in the fin. In teleost fishes there are no muscles attached to the bones. Instead, the bones provide an intermediate support in the fin and the muscles extend directly from the shoulder out to the bony fin rays, bypassing the bones all together. The new bones are fully integrated into the fin, complete with joints for articulation and attachment to the fin muscles.

***

"'Prior to this there aren't any examples where we have genes or mutations that actually elaborate the structure and make it even more complicated," said Hawkins. "Even in the case of limbs we only know how to make a limb smaller or less complex, but we didn't have any information on how add elements to a fin or a limb."

"'That was very surprising as well," confirmed Harris. "We had no hard experimental examples where you take a gene, turn it up, make it work more and get a more complex mature structure at the end. In our findings we actually found some of the dials that can turn up the genetic pathways and get a more complicated structure in the end."

***

"This finding also fits well with another recent discovery that Hox13 genes are required to form the distal regions of both fins and limbs. Altogether these discoveries reveal that the appendage Hox code was likely present in the common ancestor of tetrapods and teleost fishes and is not specific to the tetrapod lineage."

Comment: This is a beautiful example of my theory that God had preplanning in His coding of early DNA

Evolution: rate depends on tectonics and environment

by David Turell @, Monday, March 29, 2021, 23:35 (1333 days ago) @ David Turell

A new geologic approach to understanding evolution:

https://cosmosmagazine.com/earth/earth-sciences/explainer-myth-busting-the-boring-billi...

"Geologists are fond of giving dramatic names to past events, such as “The Great Dying” or “Snowball Earth” or “The Cambrian Explosion”. But perhaps the most inaccurate is the “Boring Billion”, also charmingly known as “The Dullest Time in Earth’s History”.

"...a quarter of the planet’s entire history, spanning from 1.8–0.8 billion years ago. It’s thought to have been nowhere near as dynamic and changeable as the planet today, but instead rather slimy and static. Volcanoes lay dormant, the atmosphere had much less oxygen than today, the oceans swilled about stagnant, and ice ages were absent.

"Tectonic plates ground to a standstill, too – the supercontinent Rodinia remained surprisingly stable from 1.8 billion to 750 million years ago.

“'The climate appears to be very stable, and life evolution was sluggish,” adds geologist Ming Tang from Peking University in Beijing. “For example, eukaryotes appeared on Earth about 1.7 billion years ago but only rose to dominance some 0.8 billion years ago. How Earth got stuck in this one-billion-year stasis is unclear.”

***

“'Erosion and weathering of mountain rocks provide life-essential nutrients such as phosphorus and many trace metals,” he explains. “These nutrients are critical to sustaining a productive primary biomass, which produces food and oxygen to be used by more complex life.”

***

"But further research has suggested that these isotopes were more variable than thought. Moreover, as Collins points out, this period is “actually where the most fundamental biological innovation happened – that’s endosymbiosis, which is the formation of eukaryote fossils”.

"The first eukaryote cells – which today make up every plant, animal and fungi today – evolved at the very beginning of the Boring Billion. Then, around 1.6 billion years ago, plants diverged from animals and fungi and 1.5 billion years ago animals and fungi split.

***

"A 2018 study from of the University of Tasmania, for example, suggests that the stress of limited nutrients during the Boring Billion may have actually promoted endosymbiosis, where single cells are ingested by another.

“'There’s always been a lot of focus on macro evolution and the Cambrian explosion 541 million years ago,” says lead author of the study, Indrani Mukherjee. “Yet, evolution really starts with the transformation of simple cells into complex ones, and it is in the Boring Billion that scientists have previously found the first fossilised evidence of a complex cell.”

***

"This point – ending the Boring Billion once and for all – was likely triggered by a combination of plate tectonics and climactic changes: glaciers grinding up rocks and moving elements into oceans, as well as mountains becoming eroded, providing the nutrients for life.

“But we don’t we don’t really understand all those things yet,” Collins says.

***

"Paleontologists are beginning to uncover increasingly rich evidence of life from across that period, such as fossilised algae from 1.56 billion years ago, and lichen fungi that grazed on microbial mats around 1.3 billion years ago.

"It’s really what has happened since that time that has made our Earth so different to other terrestrial worlds, and so understanding where we have come – that is, the pathway of life through the Boring Billion – is fundamental to understanding our unique place in the Solar System."

Comment: this study begins to reveal how mixed up an interplay of factors was involved in helping to speed or slow evolution. We finally ended up as a fully 'privileged planet', possibly different from all the other planets in the universe

Evolution: bacteriophages weird genome

by David Turell @, Friday, April 30, 2021, 20:05 (1301 days ago) @ David Turell

They have a 'z' code:

https://www.nature.com/articles/d41586-021-01157-x?utm_source=Nature+Briefing&utm_c...

"Alien’ genomes can be found on Earth. Some viruses that infect bacteria use an alternative genetic alphabet that’s distinct from the code used by nearly all other organisms — and, now, two teams have spelt out how the system works.

"More than four decades in the making, the studies show how dozens of these bacteriophages (or just ‘phages’), as they are known, write their genomes using a chemical base called 2-aminoadenine, Z for short, instead of adenine — the A in the As, Ts, Cs and Gs of genetics textbooks.

***

"The work is seminal, says Steven Benner, a synthetic biologist and founder of the Foundation for Applied Molecular Evolution in Alachua, Florida, who compares it to US microbiologist Carl Woese’s discovery of a new branch of single-celled life. “It represents the first discovery of a ‘shadow biosphere’ since Woese identified the Archaea a half century ago.”

"Scientists in the Soviet Union were the first to discover Z-DNA, in the late 1970s, in a phage called S-2L, which infects photosynthetic bacteria4. They found that the phage DNA behaved oddly when its two helical strands were melted apart. The bond that forms between G and C bases breaks at a higher temperature, compared with that joining A and T, and the phage’s DNA behaved as if it was made primarily from G and C. But further analysis by the Soviet team showed that the phage had replaced A with Z, which formed a stronger bond with T.

***

"In 2019, Zhao’s team found similar database matches. Both teams showed that the phages all had a gene named PurZ. This codes for an enzyme that plays an early but crucial part in making the Z nucleotide from a precursor molecule that is present in bacterial cells. They then identified additional enzymes — encoded in the genomes of bacteria that the phages infect — that complete the pathway."

Comment: The article explains that this discovery is only partially understood, but no question of a major difference from all other genomes. A God-created different code from the standard.

Evolution: newly found bacteria in plant cells

by David Turell @, Monday, May 03, 2021, 19:00 (1298 days ago) @ David Turell

Quite a surprise:

https://phys.org/news/2021-05-healthy-bacteria-cells.html

"International experts have described for the first time how healthy plants appear to carry bacteria in their cells, opening a new avenue of research to improve future plant health and propagation efforts—including food crops such as grains and fruit such as grapes.

***

"'It's baffling how this bacterial association in cell cultures escaped the attention of plant biologists and microbiologists considering that this is a widespread phenomenon in plant tissue cultures we tested, and the in-vitro cultures have long been used in both basic and applied research," says senior Flinders University Professor Chris Franco.

"Naming them Cytobacts, research collaborators Dr. Pious Thomas, previously from the Indian Institute of Horticultural Research and Flinders Emeritus Professor Franco say cytobacteria have been widely observed in micro-propagating stocks in crops including banana and papaya.

***

"'Normally the endophytic bacteria are known to reside between plant cells. Because plant cells are considered to be free of other living organisms it goes against the grain to report bacteria within plant cells," he says.

"'We need new tools to be able to study the role of these intracellular bacteria in healthy plants which are not normally amenable for conventional microbiological methods," he says.

"'This new paradigm of cytobacteria in health cells has the potential to open up a whole new area of research, including plant biology, human health and environmental microbiology," Professor Franco says.

Comment: More evidence of the importance of bacteria during all of evolution. We dn't know how, but if they are there they supply a useful purpose, yet to be found

Evolution: bacteria help ground squirrels hibernate

by David Turell @, Monday, March 21, 2022, 18:46 (976 days ago) @ David Turell

They help in the gut:

https://www.the-scientist.com/news-opinion/gut-microbes-help-ground-squirrels-endure-hi...

"By breaking down urea, the animals’ gut bacteria recycle nitrogen, which can be then used to build new molecules during prolonged fasting.

"How ground squirrels spend half of the year curled up without eating a thing and yet manage to maintain their protein balance, barely losing any muscle mass, has been a long-standing mystery. This is particularly remarkable given that prolonged periods of inactivity and fasting lead mammals’ bodies to get some energy by breaking down muscle proteins—a process known as muscle wasting.

***

"A study published in Science today (January 27) offers a clue to this phenomenon: bacteria residing in the gut of thirteen-lined ground squirrels (Ictidomys tridecemlineatus) convert urea, a molecule that accumulates during muscle wasting, into nitrogen that can be used to build new proteins, potentially counteracting muscle loss.

***

"Urea nitrogen recycling performed by microbes is particularly well understood in ruminants. Cattle, for instance, live on a relatively low-protein diet, says University of Wisconsin-Madison physiologist Hannah Carey, yet they “can grow big muscles” thanks to gut microbes that are able to convert urea into bioavailable forms of nitrogen. (my bold)

***

"Sommer, who in 2016 reported the presence of seasonal bacteria potentially beneficial to hibernating brown bears, says that these new findings show that “there is an interplay” between the host and its intestinal microbiota “that allows specific adaptations” to hibernation." (my bold)

Comment: As noted previously, here is another example of the importance of bacteria, who are at the war on each other, that dhw needlessly worries about. Bacteria contribute to so many aspects of comfortable living, it would take a book to describe all of their contributions. Life started with bacteria and we can't live without them. Note the bolds

Evolution: bacteriophages weird genome

by David Turell @, Wednesday, May 05, 2021, 23:13 (1296 days ago) @ David Turell

A new paper on how Z appeared:

https://www.sciencenews.org/article/virus-dna-z-bacteriophage-genetic-alphabet-bond-life

"More than 40 years ago, scientists in Russia reported that a type of bacteriophage called cyanophage S-2L replaces the DNA building block adenine, commonly known as A, with 2-aminoadenine, designated Z. But no one knew how the phage went from A to Z, or why.

***
"In the 1990s, Philippe Marlière, a xenobiologist then at the Pasteur Institute in Paris, was “looking for examples divergent from life as we know it,” when he came across the 1977 Russian study describing the cyanophage with the unusual DNA. After getting a sample of the virus, Marlière and colleagues deciphered the phage’s complete set of genetic instructions, or genome.

"In the virus’s genome, the researchers found instructions for building an enzyme, called PurZ, that could carry out the first step in making Z — also known as diaminopurine. The Pasteur Institute filed a patent on the enzyme in Marlière’s name in 2003.

"With the enzyme in hand, “it became crystal clear how Z was made, but we didn’t [do] any experiments to prove that we were right,” says Marlière,

***

"Indeed, this phage’s polymerase isn’t what he was looking for. Marlière’s collaborator Pierre Alexandre Kaminski and colleagues found that cyanophage S-2L’s polymerase isn’t picky about using A or Z. Instead, another viral enzyme called DatZ degrades adenine building blocks, leaving the polymerase no choice but to use Z, Kaminski, a biochemist at the Pasteur Institute,

***

"The Siphoviridae bacteriophages that infect a wide variety of bacteria all have versions of the polymerase, called DpoZ, that preferentially insert Z instead of A into the viruses’ DNA, the researchers report. Marlière has filed a patent on the enzyme.

***

"Just because the phages have the enzymes, they don’t necessarily use Z in their DNA. So Zhao and colleagues in China chose a phage called SH-Ab 15497 that infects Acinetobacter bacteria, and confirmed that its DNA alphabet also has Z in place of A, his team reports.

"Why phages would bother with the unconventional DNA was still unknown. One hypothesis is that replacing A with Z is a countermeasure against bacterial defense enzymes, known as restriction enzymes, that chop up DNA from invading phages. Such enzymes have a hard time recognizing and cutting DNA containing Z bases, Zhao and colleagues found. “The phage is trying to avoid being destroyed by the host,” he says. “This is really a protection mechanism for the phage.”

***

"It’s debatable whether Z-containing phages are new forms of life (not to mention the ongoing debate about whether viruses are alive), says Floyd Romesberg, a synthetic biologist at the global pharmaceutical and biotechnology company Sanofi’s site in La Jolla, Calif. But it does open up new possibilities, he says, for what life is, was, and could become.

“'Life isn’t exactly what we thought it was. Life doesn’t have to be GTAC,” he says, referring to the four letters of the standard DNA alphabet. “What it says is that life can be more diverse.'”

Comment: This is all part of the ecosystem between bacteria and bacteriophages. In my view all ecosystems are important in the natural balances they create. That is why I point out their importance and ow they fit into the giant evolved bush of life. This is another discovery like Archaea. It makes one wonder, how many strange forms of life are still out there to uncover.

Evolution: new type of Archaea found:

by David Turell @, Friday, May 07, 2021, 20:27 (1294 days ago) @ David Turell

They have a differing metabolism:

https://www.sciencenews.org/article/climate-microbes-recycle-carbon-methane-archaea-mic...

"Now, De Anda and her colleagues have identified an entirely new phylum — a large branch of related organisms on the tree of life — of archaea. The first evidence of these new organisms were within sediments from seven hot springs in China as well as from the deep-sea hydrothermal vents in the Guaymas Basin in the Gulf of California. Within these sediments, the team found bits of DNA that it meticulously assembled into the genetic blueprints, or genomes, of 15 different archaea.

"The researchers then compared the genetic information of the genomes with that of thousands of previously identified genomes of microbes described in publicly available databases. But “these sequences were completely different from anything that we know,” De Anda says.

***

"Brockarchaeota, it turns out, actually live all over the world — but until now, they were overlooked, undescribed and unnamed. Once De Anda and her team had pieced together the new genomes and then hunted for them in public databases, they discovered that bits of these previously unknown organisms had been found in hot springs, geothermal and hydrothermal vent sediments from South Africa to Indonesia to Rwanda.

***

"...the team expected that — like other archaea previously found in such environments — these archaea would be methane producers. They do munch on the same materials that methane-producing archaea do: one-carbon compounds like methanol or methylsulfide. “But we couldn’t identify the genes that produce methane,” De Anda says. “They are not present in Brockarchaeota.”

"That means that these archaea must have a previously undescribed metabolism, through which they can recycle carbon — for example in sediments on the seafloor — without producing methane. And, given how widespread they are, De Anda says, these organisms could be playing a previously hidden but significant role in Earth’s carbon cycle."

Comment: Only known since 1970, it is not surprising new ones are turning up.

Evolution: weird dinoflagellates DNA

by David Turell @, Monday, May 17, 2021, 15:12 (1284 days ago) @ David Turell

Not like any other chromosome setup:

https://discovery.kaust.edu.sa/en/article/1128/coral-symbionts-have-a-genome-like-no-other

The genome of single-celled plankton, known as dinoflagellates, is organized in an incredibly strange and unusual way, according to new research.

***

"A striking finding was that the genes in the genome tended to be organized in alternating unidirectional blocks. “That’s really, really different to what you see in other organisms,” says Octavio Salazar, a postdoc in Manuel Aranda's group at KAUST and one of the lead authors of the study. The orientation of genes on a chromosome is usually random. In this case, however, genes were consistently oriented one way and then the other, with the boundaries between blocks showing up clearly in the chromatin interaction data.

"This organization is also reflected in the three-dimensional structure of the genome, which the team inferred comprises rod-shaped chromosomes that fold into structural domains at the boundaries where gene blocks converge. Even more intriguingly, this structure appears to be dependent on transcriptional activity. When the researchers treated cells with a chemical that blocks gene transcription, the structural domains disappeared.

"This unusual link is consistent with another strange fact about dinoflagellates — they have very few transcription factors in their genome and do not seem to respond to environmental changes by altering gene expression. They may use gene dosage to control expression and adapt to the environment by losing or gaining chromosomes or perhaps via epigenetic structural modifications.

"Another open question is the origin of this exceptional genome structure. Dinoflagellates produce very few histones, the proteins used by other eukaryotes to structure their DNA, instead using viral proteins incorporated into their genome long ago. The extraordinary genome structure and genetic regulation may be a consequence of how these viral proteins work, but that remains to be confirmed.

"The dinoflagellate genome defies the expectation and dogmas built from studying other eukaryotes. “It shows that nature can work in a completely different way than we thought,” says Salazar. “There are so many possibilities for what could have happened as life evolved.'"

Comment: Perhaps common descent is not so 'common'.

Evolution: conserved gene order

by David Turell @, Tuesday, May 18, 2021, 17:07 (1283 days ago) @ David Turell

A way of looking back into deep history of genes:

https://phys.org/news/2021-05-scientists-oldest-case-gene.html

"Genes are encoded in DNA, and closely related species will often have the same genes in the same order in the genome. However, over millions of years of evolution, this shared gene order gets lost as the DNA gets broken, repaired and reshuffled.

"More rarely, the gene order is "conserved" ¬- retained even between distant evolutionary relatives—if the genes encode for proteins that cooperate closely.

"Previously, the oldest known cases of conserved gene order traced back to the Last Universal Common Ancestor of life, known as LUCA. LUCA was a population of cells billions of years ago that was ancestral to all cellular life. Its existence is inferred from genes that are shared across all major branches of the tree of life.

***

"The scientists looked at the order of genes coding for two famous rotating nanomachines: the bacterial flagellar motor, and the ATP synthetase. Both protein complexes are so tiny that they can only be visualised with electron microscopes.

"The flagellar motor is a rotating "tail" that many bacteria, including pathogens like cholera, use to swim. The ATP synthetase is found in the mitochondria of the cells of all animals and plants, and it generates ATP, the energy currency of life and a key chemical used by most cells. Remarkably, although the ATP synthetase is much smaller than the flagellum, both motors rotate tiny wheels to do their job.

***

"Dr. Matzke said that it has been known for a while that the bacterial flagellum and the ATP synthetase have several proteins that are probably evolutionarily related, but showing that these two very different systems have several related genes in identical gene order, across essentially all of life, clinches the case that the systems are related.

"'Finding conserved gene order dating back not just to LUCA, but to before LUCA, makes this the most ancient case of conserved gene order known to science," said the lead author, Nick Matzke. "Such an extreme example of gene order conservation also suggests that there is a gene expression pattern shared between the two systems that also goes all the way back to that ancestral system," he added.

"'The fact that we can say anything at all about the genome structure of a pre-LUCA ancestor is amazing," says corresponding author Matt Baker, who runs a lab devoted to experimentally evolving bacterial flagellar motors at UNSW.

"'Our study adds to the evidence that suggests that deep in the core of the bacterial flagellum, there is a 'molecular fossil' that looks like a very primitive version of the ATP synthetase.'"

Comment: Genomes show common descent. In evolution everything present has a relationship to the past.

Evolution: contribution of oxygen

by David Turell @, Wednesday, May 19, 2021, 19:05 (1282 days ago) @ David Turell

Role of Great Oxygenation event challenged:

https://www.sciencedaily.com/releases/2021/05/210518205459.htm

"Scientists have long thought that there was a direct connection between the rise in atmospheric oxygen, which started with the Great Oxygenation Event 2.5 billion years ago, and the rise of large, complex multicellular organisms.

"That theory, the "Oxygen Control Hypothesis," suggests that the size of these early multicellular organisms was limited by the depth to which oxygen could diffuse into their bodies. The hypothesis makes a simple prediction that has been highly influential within both evolutionary biology and geosciences: Greater atmospheric oxygen should always increase the size to which multicellular organisms can grow.

"It's a hypothesis that's proven difficult to test in a lab. Yet a team of Georgia Tech researchers found a way --

***

"'We show that the effect of oxygen is more complex than previously imagined. The early rise in global oxygen should in fact strongly constrain the evolution of macroscopic multicellularity, rather than selecting for larger and more complex organisms," notes Ratcliff.

***

"The results surprised Bozdag. "I was astonished to see that multicellular yeast doubled their size very rapidly when they could not use oxygen, while populations that evolved in the moderately oxygenated environment showed no size increase at all," he says. "This effect is robust -- even over much longer timescales."

Comment: We know tiny organisms can live on almost anything from our extremophile studies, but large size must be oxygen dependent: for organisms without a circulation to deliver oxygen of course it required diffusion. With a circulatory system large size can appear. The progression seems quite logical. Only larger organisms have the required complexity. It seems design is required to develop everything in the most efficient order.

Evolution: fungi helped plants onto land

by David Turell @, Friday, May 21, 2021, 01:36 (1281 days ago) @ David Turell

Plants started in the oceans, and joining with fungi got themselves terrestrial:

https://www.sciencedaily.com/releases/2021/05/210520145357.htm

"450 million years ago, the first plants left aquatic life. Researchers have now succeeded in demonstrating that this colonization of land by plants was made possible by a partnership between plants and fungi. Validating this 40-year-old hypothesis allows us to understand a stage that was crucial to the development of life on Earth.

***

"Researchers from the CNRS and the Université de Toulouse III -- Paul Sabatier, in collaboration with INRAE, have succeeded in demonstrating that this colonisation of land by plants was made possible by a partnership between plants and fungi. Validating this 40-year-old hypothesis allows us to understand a stage at was crucial to the development of life on Earth.

***

"Most plants live in symbiosis with fungi, whereby the two organisms exchange resources in a mutually beneficial way. Previous studies have shown the existence of genes that are essential for the proper functioning of this symbiosis, particularly in vascular plants. Here, scientists focused on a bryophyte resembling a succulent plant (see image), for which such genes had not yet been studied: Marchantia paleacea.

"By studying M. paleacea, they were able to demonstrate a lipid transfer between the plant and the fungus similar to that observed in vascular plants. By adapting the use of CRISPR, a molecular tool that allows DNA to be cleaved precisely, they were then able to modify a gene predicted as "symbiotic." As in vascular plants, the interruption of lipid exchange between the plant and the fungus leads to symbiosis failure in the bryophyte.

"The common ancestor of these two groups of plants, which colonised dry land, must therefore have exchanged lipids with the fungus, as do the plants of today. Thus, 450 million years later, one of the secrets of life's first steps on land has finally been elucidated."

Comment: How did plants latch onto fungi? Luck or design? Looks designed tov me.

Evolution: deep sea extremophiles

by David Turell @, Sunday, May 23, 2021, 16:32 (1278 days ago) @ David Turell

These are in very deep trenches, newly discovered and large multicellular organisms:

http://oceans.nautil.us/feature/695/in-the-deep-sea-incredible-animals-abound?mc_cid=6f...

"The deep sea is a part of our planet unlike any other. Accounting for over 95 percent of Earth’s living space, it is cold, dark, and under extreme pressure, yet an astounding variety of creatures abound.

"Although relatively little is known about the biology and behavior of animals in the deep sea—defined as beginning at 650 feet down, where sunlight ceases to penetrate, and stretching to the bottom of trenches nearly seven miles below the ocean’s surface—our ability to observe and study them has never been greater. Over the past half-century, the development of remotely operated vehicles, deep-sea cameras, and deep-submergence vehicles have made it possible for people to get up close and personal with the squishy, spiny, fluorescent, and fantastical residents of this mysterious world.

"In recent years, scientists have made great progress gathering high-resolution photos and videos of deep-sea organisms for all to see. In doing so, they hope to show the world that “the deep-sea is not this barren, lonely, dark place where nothing survives,” says Dr. Alan Jamieson, a world-renowned marine biologist at Newcastle University. “There are incredible animals down there.”

"Here are a few deep-sea species that capture the imagination.

"Giant larvaceans, which average about four inches from head to tail, live inside giant orbs of mucus, known as houses, that can reach up to 3.3 feet in diameter. Like all larvaceans, the giant larvacean builds its house by secreting a sticky, snot-like substance from cells on its head.

***

"This ram’s horn squid was captured on video for the first time ever in October of 2020 by researchers aboard Schmidt Ocean Institute’s vessel Falkor. Despite the name, this animal isn’t technically a squid, but rather a cephalopod. The “ram's horn” refers to a spiraled internal shell that serves as its skeleton. They average around one to three inches in length and have a light-producing organ atop their mantle that allows them to send visual signals in the darkness of the deep.

***

"The bloody-belly comb jelly is one of the deep-sea’s most vibrant gems. The name of this ruby-colored ctenophore, discovered by Monterey Bay Aquarium Research Institute researchers in 2001, was inspired by the creature’s blood-red tissue. The bloody-belly comb jelly’s bright red color may make it easy for remotely operated vehicles with lights and cameras to spot it, but its color actually helps it hide from predators. The color red is nearly invisible in the deep sea, allowing the jelly to not only conceal itself but also any bioluminescent organism being digested in its stomach.

***

"In April of 2020, as Schmidt Ocean Institute researchers explored the depths beyond the west coast of Australia, they encountered what might be the world’s longest animal: a 390-foot long Apolemia siphonophore. For context, blue whales are, at their largest, only about 100 feet from tip to tail.

Siphonophores are gelatinous colonial organisms comprised of hundreds, sometimes thousands, of individuals known as zooids.

***

"The dumbo octopus is the deepest-dwelling, and arguably the cutest, genus of octopuses. All 13 species have skin connecting their tentacles and ear-like fins that they flap to “fly” through the water. They have been found at depths exceeding 10,000 feet and it’s believed they can live even deeper. Unlike most octopuses, dumbos don’t have ink sacs, perhaps because they have very few predators in the deep sea. Dumbo octopuses can be found all over the world, but this one was found off the coast of Australia’s Great Barrier Reef in October of 2020 by scientists aboard Schmidt Ocean Institute’s research vessel Falkor at a depth of around 3,000 feet.

***

"Scientists aboard Schmidt Ocean Institute’s research vessel Falkor discovered the translucent, scaleless Mariana snailfish in 2014 while surveying the Mariana Trench, the deepest place on Earth. They dubbed the new species Pseudoliparis swirei, a tribute to Herbert Swire, the 19th-century biologist and navigator who helped discover the trench.

"These extremophiles only grow to be around 11 inches long, but despite their small size, they are among the top predators of their realm. They consume tiny crustaceans hidden in seafloor sediment.

"The Mariana snailfish has been found at depths beyond 26,000 feet. Only one other fish, a closely-related Mariana Trench-dweller called the ethereal snailfish, has ever been found deeper."

Comment: See the photos. Amazing.

Evolution: some extremophiles use radioactivity

by David Turell @, Monday, May 24, 2021, 19:47 (1277 days ago) @ David Turell

The only way they can live:

https://www.quantamagazine.org/radioactivity-may-fuel-life-deep-underground-and-inside-...

"Scientists poke and prod at the fringes of habitability in pursuit of life’s limits. To that end, they have tunneled kilometers below Earth’s surface, drilling outward from the bottoms of mine shafts and sinking boreholes deep into ocean sediments. To their surprise, “life was everywhere that we looked,” said Tori Hoehler, a chemist and astrobiologist at NASA’s Ames Research Center. And it was present in staggering quantities: By various estimates, the inhabited subsurface realm has twice the volume of the oceans and holds on the order of 1030 cells, making it one of the biggest habitats on the planet, as well as one of the oldest and most diverse.

***

"Two papers appearing in February by different research groups now seem to have solved some of this mystery for cells beneath the continents and in deep marine sediments. They find evidence that, much as the sun’s nuclear fusion reactions provide energy to the surface world, a different kind of nuclear process — radioactive decay — can sustain life deep below the surface. Radiation from unstable atoms in rocks can split water molecules into hydrogen and chemically reactive peroxides and radicals; some cells can use the hydrogen as fuel directly, while the remaining products turn minerals and other surrounding compounds into additional energy sources.

"Although these radiolytic reactions yield energy far more slowly than the sun and underground thermal processes, the researchers have shown that they are fast enough to be key drivers of microbial activity in a broad range of settings — and that they are responsible for a diverse pool of organic molecules and other chemicals important to life.

***

"In work published in 2016, they showed that radiolytic hydrogen peroxide was likely interacting with sulfides in the walls of a Canadian mine to produce sulfate, an electron acceptor. But Sherwood Lollar and her colleagues still needed proof that cells were relying on that sulfate for energy.

"In 2019, they finally got it. By culturing bacteria from the groundwater in mines, they were able to show that the microbes made use of both the hydrogen and the sulfate. Water, some radioactive decay, a bit of sulfide — “and then you get a sustained system of energy production that can last for billions of years … like an ambient pulse of habitability,” said Jesse Tarnas, a planetary scientist and NASA postdoctoral fellow.

***

"Analyses of water samples from the same Canadian mine showed very high concentrations of acetate and formate, organic compounds that can support bacterial life. Moreover, measurements of isotopic signatures indicated that the compounds were being generated abiotically. The researchers hypothesized that radiolytic products were reacting with dissolved carbonate minerals from the rock to produce the large quantities of carbon-based molecules they were observing.

"To cement their hypothesis, Sherwood Lollar’s team needed additional evidence. It arrived just one month later. Nuclear chemists led by Laurent Truche, a geochemist at Grenoble Alpes University in France, and Johan Vandenborre of the University of Nantes had been independently studying radiolysis in laboratory settings. In work published in March, they pinned down the precise mechanisms and yields of radiolysis in the presence of dissolved carbonate.

***

"According to their models, in deep sediments more than a few million years old, radiolytic hydrogen is being produced and consumed more quickly than organic matter is — making radiolysis of water the dominant source of energy in those older sediments. While it accounts for only 1%-2% of the total energy available in the global marine sediment environment — the other 98% comes from organic carbon, which is mostly consumed when the sediment is young — its effects are still quite sizable. “It might be slow,” said Doug LaRowe, a planetary scientist at the University of Southern California, “but from a geologic perspective, and over geologic time … it starts to add up.”

"This means that radiolysis “is a fundamental source of bioavailable energy for a significant microbiome on earth,” Sauvage said — not just on the continents but beneath the oceans, too. “It’s quite striking.”

***

"Modeling and experimental work have shown that even simple systems (consisting solely of hydrogen, carbon dioxide and sulfate, for example) can lead to extremely intricate microbial food webs; adding compounds like formate and acetate from radiolysis to the mix could significantly broaden the potential ecological landscape. And because acetate and formate can form more complex organics, they can give rise to even more diverse systems. “It’s important to see life operating with this amount of complexity,” said Cara Magnabosco, a geobiologist at the Swiss Federal Institute of Technology Zurich, “even in something that maybe you would view as very simple and very energy-poor.'”

Comment: Back to the same concept. Life must have a continuous energy supply to survive. Further this system may be the way life started.

Evolution: 'survival of fittest' means?

by David Turell @, Tuesday, June 08, 2021, 19:43 (1262 days ago) @ David Turell

An article explains true meaning per Darwin:

https://www.realclearscience.com/blog/2021/06/03/the_problem_with_survival_of_the_fitte...

"Today, Charles Darwin's On the Origin of Species is recognized as one of the greatest books in scientific history, but when it was initially published, the broad reaction was hostile. Laypersons in general were uncomfortable with, and even insulted by, the ramifications of evolution by means of natural selection. "Humans aren't apes!" they proclaimed.

"One reader who was a fan was English polymath Herbert Spencer, who envisioned the concept of evolution touching culture, ethics, and even the human mind. Spencer did have one key nitpick, however. He thought that the phrase "survival of the fittest" was a more apt descriptor for the mechanism that drives evolution, rather than the term "natural selection" that Darwin employed.

"Hearing of Spencer's idea, noted British naturalist Alfred Russel Wallace, who independently conceived of evolution by natural selection, wrote to Darwin and urged him to adopt the phrase "survival of the fittest" in future editions of On the Origin of Species. Natural selection seemed to personify nature as "selecting" successful species, he contended. Using "survival of the fittest" would do away with that misconception.

***

"But in an attempt to dispel one misconception, Darwin inadvertently created another. While Darwin intended "fittest" to refer only to the ability to survive and reproduce in a particular environment, others misunderstood it as a description of an organism's physical prowess – bigger, stronger, faster, etc.

"As evolution gained evidential backing and adherents over the years, some misused "survival of the fittest" to support eugenics polices that favored rooting out undesirable traits in humanity, leading to racism, oppression, sexism, and genocide.

"It's ironic that "survival of the fittest" has been misused to advocate meanness. Oftentimes, the most reproductively successful species and individuals are the ones who cooperate, who are the friendliest.

"'Homo sapiens are the best example of what survival of the friendliest is," science writer Vanessa Woods said.

"Woods and her husband Brian Hare, a professor of evolutionary anthropology at Duke University, laid out the case for this in a book published last year. We co-existed with four other human species for a hundred thousand years, they wrote. Neanderthals, for example, had brains that were at least as big as ours. They had technology. They had culture. They were stronger. Homo sapiens morphology suggests that we were the friendlier species, however. Cooperation likely allowed us to win out.

"'Survival of the fittest" probably isn't going out of style anytime soon, so it's important to understand what it truly means. It's not meant to refer to 'Hunger Games'-style ruthless competition, only to an organism's ability to thrive and reproduce in a specific environment."

Comment: Good explanation of its limits, but it still a surviving tautology even with those limits.

Evolution: land plant evolution

by David Turell @, Thursday, July 22, 2021, 19:10 (1218 days ago) @ David Turell

Involved multiple genetic alterations:

https://phys.org/news/2021-07-insight-reproductive-evolution.html

"Around 470 million years ago, plants began to conquer the terrestrial surfaces. The first examples had a small axis terminated by a structure capable of forming spores, almost like current mosses. The appearance of plant organs mediated the explosive radiation of land plants, which shaped the surface of our planet and allowed the establishment of terrestrial animal life.

"However, evolving a diversity of organs, such as roots, leaves, or immobile gametes, requires coordinated genetic changes: the rise of new genes, the repurpose of genetic material, and the development of new regulatory programs. In a study published in Nature Plants,...introduced an atlas that compiles gene expression data from ten different species of land plants. This is the largest such collection to date. Focusing on the detailed analysis of the collected data, the team looked to identify novel and missing components involved in the formation of sex organs and cells. "Comparing data from such different species allowed us to distinguish genes that are important for the reproduction of all land plants from those that only matter for flowering plants," explains Jörg.

"The comparative analysis of the atlases revealed that a large portion of the gene expression remained unchanged throughout evolution, when looking at equivalent organs from different species. The data also showed that the establishment of organs relies heavily on the repurpose of existing genetic material. "We saw that many groups of genes appeared long before the corresponding organ, and this tells us that they emerged through the repurpose of genetic material that already existed," explains the researcher.

"The team also looked for patterns in the development of female and male gametes. "We were interested in comparing the first land plants, which have swimming sperm and need water for their reproduction, with plants with non-swimming sperm, which is inside the pollen grain and does not depend on water for its mobility," says Jörg. The team found that in contrast with female gametes, male gametes presented a high number and conservation of genes, indicating that male reproduction appears to be more specialized than female. Among them, proteins that regulate gene expression—transcription factors—and proteins responsible for transferring phosphate to other proteins—kinases— which are potentially important for the making and function of pollen."

Comment: Based on how little change in genetic bases created humans from apes, I would assume that land plants arrived the same way, with modest alterations, given more evidence of my t heory that much of evolution was coded into the original life's DNA to produce evolution. I would note Darwin was very puzzled as to how the 'plant bloom' happened. It was an equal concern he had as to the Cambrian explosion.

Evolution: earliest pre-Cambrian animals?

by David Turell @, Wednesday, July 28, 2021, 19:34 (1212 days ago) @ David Turell

Were sponges here 890 million years ago? Very possibly:

https://www.newscientist.com/article/2285295-sponge-fossils-suggest-animals-already-exi...

"The origin of animals may have happened 350 million years earlier than thought. Fossils that seem to be sponges, one of the first animals to evolve, have been found in rocks from 890 million years ago.


***

"Turner studied rocks from north-west Canada that contained the preserved remains of reefs from 890 million years ago, during the Tonian period. These reefs weren’t made by corals, like modern reefs, as these didn’t exist yet. Instead, they were made by photosynthetic bacteria living in shallow seas. The reefs, known as stromatolites, were many kilometres across and rose to heights of hundreds of metres above the seafloor. “These are spectacular reefs,” says Turner.

"Within the rocks, Turner found the preserved remains of a network of fibres, which branched and joined up in a complex mesh. These are the remains of sponges, she argues, but “not a normal fossil”.

"The bodies of modern sponges contain a mesh made of a protein called spongin, which forms a soft skeleton. Turner’s work suggests that when ancient sponges died, their soft tissues became mineralised, but the tough spongin didn’t. Eventually, though, it decayed, leaving hollow tubes within the rock that later filled with calcite crystals. These networks of calcite (pictured above) are what Turner then found – and the way the network branched looked just like spongin (pictured below).

***

"If sponges existed 890 million years ago, then the origin of animals must have occurred much earlier than previous fossils have suggested. “Molecular clock” studies that use modern DNA to estimate when key points of evolution occurred have indicated that animals emerged long before the earliest fossils. However, this approach is often thought to be less reliable when there aren’t any fossils available to calibrate the molecular clock. Turner’s finding “brings the fossil record back into line with the molecular clock estimates”, says Penny.

***

"Finally, there is the question of which animal groups were the first to emerge. Palaeontologists have generally assumed that sponges were first, but in the past decade some genetic studies have suggested that comb jellies – which superficially look like jellyfish – actually preceded them. The debate is ongoing: Penny would only say that finding early sponges doesn’t mean there weren’t also comb jellies very early, because such soft-bodied animals are rarely preserved.

Comment: Very simple early animals had to have a start in our past. Doesn't fill teh Cambrian gap.

Evolution: horse shoe crab brain unchanged from Cambrian

by David Turell @, Thursday, July 29, 2021, 15:20 (1211 days ago) @ David Turell

Ancient fossil brain and present brain look the same:

https://theconversation.com/ancient-brains-a-look-inside-the-extraordinary-preservation...

"Charles Darwin famously discussed the “imperfections” of the geological record in his book On The Origin of Species. He correctly pointed out that unless conditions are just right, it’s unlikely for organisms to be preserved as fossils, even those with bones and shells.

"He also said “no organism wholly soft can be preserved”.

"However, after more than a century of fossil hunting since his book was published, we now know the preservation of soft creatures is indeed possible — including some of the most fragile animals, such as jellyfish.

"Burgess Shale-type deposits are much older, being Cambrian in age (typically 500 to 520 million years old). They contain an abundance of exceptionally preserved marine arthropods.

"These fossils are very important as they represent what are unmistakably some of the oldest animals, and can therefore inform us on their origins and earliest evolutionary history. Their remains are primarily preserved as carbon films in mudstone.

***

"Many Burgess Shale-type arthropod specimens preserve internal organs, especially the gut. But fewer show parts of the central nervous system, such as the optic nerves, ventral nerve cord or the brain.

"Our new fossil demonstrates arthropod brains can be preserved in an entirely different way. The specimen of the horseshoe crab, Euproops danae, comes from the world-famous Mazon Creek deposit of Illinois, in the US. Fossils from this deposit are preserved within concretions made of an iron carbonate mineral called siderite.

***

"One of the challenges of interpreting ancient arthropod anatomy is the lack of close modern relatives available for comparison. But luckily for us, Euproops can be compared to the four species of living horseshoe crabs.

"Even to the untrained eye, a comparison of the fossil’s nervous system with that of a modern horseshoe crab (below) leaves little question that the same structures are found in both species, despite them being separated by 310 million years.

"The fossil and living nervous systems match up in their arrangements of nerves to the eyes and appendages, and show the same central opening for the oesophagus to pass through.

"Uncovering these exceptional specimens gives palaeontologists a rare glimpse into the deep past, enhancing our understanding of the biology and evolution of long-extinct animals. It seems Charles Darwin need not have been so pessimistic about the fossil record after all."

Comment: see the pictures of comparison. Stasis, not an advance, can happen also. Modern fossil analysis techniques are far in advanced of what Darwin thought could be.

Evolution: living forms evolve in patterns

by David Turell @, Sunday, August 01, 2021, 16:59 (1208 days ago) @ David Turell

When looked at from a biophysical standpoint:

https://nautil.us/issue/102/hidden-truths/the-math-of-living-things

"The Scottish biologist and polymath D’Arcy Wentworth Thompson published On Growth and Form in 1917, with a massive 1,116 page second edition in 1942.1 It explains that the structure of organisms exists “in conformity with physical and mathematical laws.” Arguing that Darwin’s natural selection is incomplete, Thompson showed how to extend the theory of evolution through analysis. He explained the shapes and sizes of animals and their skeletons through the laws of mechanics, and used pure math to show how an animal’s body might develop. The book influenced scientists with its challenges to Darwinian evolution and its compelling explication of the beauties of the natural world. A recent reconsideration praises it as “provocative and inspiring.”

***

"Decades later, the connections seen by Thompson, Schrödinger, and Einstein have grown. One theme in Thompson’s work is the use of pure math to understand the morphology of living things. Thompson explored this by drawing an outline of an organism on a square grid and applying a mathematical transformation such as stretching the grid in one direction. The resulting image resembled another closely related organism—the long body of a parrotfish mathematically became the curved shape of an angelfish. This suggests that an organism’s body develops along preferred directions for cell growth, although math alone does not explain what biochemical and physical processes might cause this.

"Now new mathematical approaches give deeper views into how organisms develop their bodily structures.

***

"Another approach Thompson used to great advantage was the physical one of determining how mechanical quantities such as force affect the size and behavior of organisms. He did this by dimensional analysis, which recognizes that any mechanical quantity can be expressed as a combination of the three physical fundamentals mass M, length L, and time T; for instance, velocity has the dimensions L/T, and force the dimensions ML/T2. From these basics, Thompson showed that big fish swim faster than little ones, and that an insect cannot become monstrously huge. This is because as its size increases, its weight increases faster than the strength of its supporting legs, so as it grew it would soon become unable to function.

***

"Andersen plotted these rates of nutrient intake against the size of the organism from 10-4 millimeters to 1 millimeter and found that size correlates with feeding mode. Smaller organisms feed by diffusion, larger ones actively feed, and those mid-range in size tend to be plants that use photosynthesis. The relative numbers of the three types therefore depends on the level of nutrients and sunlight as they occur across the oceans; for instance, with plentiful nutrients but little light, active and diffusion-based animal feeders dominate plants. Andersen is now developing plankton simulator software based on the underlying physical ideas to provide estimates of plankton diversity and function under different ocean conditions.

***

"Relating information to order and thermodynamics has special meaning in living organisms, which survive, grow and reproduce by maintaining their internal organization. This is implicit in the so-called “central dogma” of molecular biology, the statement by Francis Crick that the information stored in the DNA molecule flows to other molecular processes that make proteins and then a whole organism according to plan. Following the flow of information is therefore a way to describe the thermodynamics of entire biological systems. This opens up the study of properties that arise when the interactions among the system’s components, such as the neurons in the brain, produce new “emergent” high-level behavior.

"This more expansive approach is influencing research at the interface of physics and biology as shown at a 2018 symposium held at Trinity College to celebrate the 75th anniversary of the lectures that became What is Life? The event featured noted scientists who projected where research in new areas related to information and emergent properties, such as complex systems and the network of neurons that constitutes the brain, will take both physics and biology in years to come. Whatever those outcomes, what is surely important is the growing use of a broad approach based on information, which encompasses physical and biological science. Only such a powerful multidisciplinary, even transdisciplinary effort could hope to finally answer Schrödinger’s original question: What is life?"

Comment: It seems God's designs must follow biophysical requirements and patterns as they appear from previous forms. All forms are logically formed following physical requirements. Legs must become flippers

Evolution: crocodiles change skull forms

by David Turell @, Saturday, October 09, 2021, 00:53 (1140 days ago) @ David Turell

This Darwinist article calls it evolution, Really?:

https://www.smithsonianmag.com/science-nature/modern-crocodiles-are-evolving-rapid-rate...

"Today’s crocodiles are not holdovers that have gone unchanged since the Jurassic, but are one expression of a great, varied family that’s been around for over 235 million years. More than that, crocodiles are still evolving—and faster than they have at other times in their family’s scaly history.

"The seemingly contradictory conclusion about crocodylian evolution comes from a recent study published in Proceedings of the Royal Society B by University College London anatomist Ryan Felice and colleagues. By comparing three-dimensional models to track anatomical landmarks on crocodylian skulls over time, the researchers found that modern crocodile species in Australia, southeast Asia and the Indo-Pacific are evolving quickly despite looking like semi-aquatic antiques. Modern croc species look so similar not because of conserving ancient traits, but because crocodiles are evolving the same skull shapes over and over again through time.

***

"To track how crocodile skull shapes changed through the ages, Felice and colleagues used a technique called geometric morphometrics to compare the skulls of 24 living crocodylian species and 19 of their fossil relatives. These three-dimensional models allowed researchers to look at different landmarks on the skulls—such as the placement of the eyes or the length of the snout— and track how anatomy has shifted over time and through evolutionary relationships.

***

"Digging in deeper to why crocodiles tend to repeat similar forms over time might help explain why today’s alligators, crocodiles and gharials seem so similar to each other. They are all semi-aquatic carnivores that hunt by ambush. There are no more terrestrial crocs, seagoing crocs, crocodiles with a varied toolkit of different-shaped teeth, or species like many of those that used to exist. Felice and colleagues estimate that of all the crocodile skull shapes that have existed, today’s species only represent about a third of that variety. But given the longstanding survival of these reptiles, could crocodiles someday undergo another evolutionary burst and evolve some of these lost forms again?"

Comment: Actually fascinating in that crocs and their relatives are cycling back and forth between certain parameters and forms. But to call this evolution is ridiculous. It is the same species adapting epigenetically as time and environment require. Just another example of having to interpret the constant propaganda protecting the Darwin paradigm.

Evolution: mutations random or not?

by David Turell @, Wednesday, January 12, 2022, 18:15 (1044 days ago) @ David Turell

A new plant study says not:

https://phys.org/news/2022-01-evolutionary-theory-dna-mutations-random.html

"Mutations occur when DNA is damaged and left unrepaired, creating a new variation. The scientists wanted to know if mutation was purely random or something deeper. What they found was unexpected.

"'We always thought of mutation as basically random across the genome," said Grey Monroe, an assistant professor in the UC Davis Department of Plant Sciences who is lead author on the paper. "It turns out that mutation is very non-random and it's non-random in a way that benefits the plant. It's a totally new way of thinking about mutation."

"Researchers spent three years sequencing the DNA of hundreds of Arabidopsis thaliana, or thale cress, a small, flowering weed considered the "lab rat among plants" because of its relatively small genome comprising around 120 million base pairs. Humans, by comparison, have roughly 3 billion base pairs.

***

"Sequencing of those hundreds of Arabidopsis thaliana plants revealed more than 1 million mutations. Within those mutations a nonrandom pattern was revealed, counter to what was expected.

"'At first glance, what we found seemed to contradict established theory that initial mutations are entirely random and that only natural selection determines which mutations are observed in organisms," said Detlef Weigel, scientific director at Max Planck Institute and senior author on the study.

"Instead of randomness they found patches of the genome with low mutation rates. In those patches, they were surprised to discover an over-representation of essential genes, such as those involved in cell growth and gene expression.

"'These are the really important regions of the genome," Monroe said. "The areas that are the most biologically important are the ones being protected from mutation."

"The areas are also sensitive to the harmful effects of new mutations. "DNA damage repair seems therefore to be particularly effective in these regions," Weigel added.

"The scientists found that the way DNA was wrapped around different types of proteins was a good predictor of whether a gene would mutate or not. "It means we can predict which genes are more likely to mutate than others and it gives us a good idea of what's going on," Weigel said.

"The findings add a surprising twist to Charles Darwin's theory of evolution by natural selection because it reveals that the plant has evolved to protect its genes from mutation to ensure survival.

"'The plant has evolved a way to protect its most important places from mutation," Weigel said. "This is exciting because we could even use these discoveries to think about how to protect human genes from mutation.'"

Comment: It has been found that DNA has hot spots of mutation, but non-random mutation is anti-Darwin and consistent with ID.

Evolution: mutations random or not? ID notes study

by David Turell @, Sunday, February 20, 2022, 15:34 (1005 days ago) @ David Turell

With these comments:

https://evolutionnews.org/2022/02/new-study-in-nature-showing-non-random-mutation-spell...

"A correspondent asked me about a recent paper in the journal Nature, “Mutation bias reflects natural selection in Arabidopsis thaliana,” aka the commonly studied flowerweed, thale cress. The abstract states, “Since the first half of the twentieth century, evolutionary theory has been dominated by the idea that mutations occur randomly with respect to their consequences. Here we test this assumption with large surveys of de novo mutations in the plant Arabidopsis thaliana.” They show that “epigenome-associated mutation bias reduces the occurrence of deleterious mutations in Arabidopsis, challenging the prevailing paradigm that mutation is a directionless force in evolution.”

"That mutation is “directionless” or “random” is a traditional axiom of evolutionary biology. My correspondent wanted to know what it means to consider that some mutations may be “non-random” after all. She supposed that she was asking a “dumb question.”

"Actually, it’s not in the least a dumb question — it’s exactly the right question to ask! In the context of this paper, what “non-random” means is that mutations are less likely to occur in gene-coding DNA — especially in what they call “essential genes.” This overturns two standard assumptions of the modern theory of evolution.

"In evolutionary biology, it’s generally thought that mutations are “random” in two respects:

"Mutations occur with equal likelihood across the entire genome. So there’s no part of the genome that is MORE or LESS likely to experience mutations than any other part of the genome. This is supposed to mean mutations are not directed or concentrated, but in a sense are randomly distributed across the genome. Mutations occur without regard to the needs of the organisms, meaning they are random and not directed for or against what the organisms needs to survive.

"The Nature study found evidence against both (1) and (2). In Arabidopsis, some parts of the genome are LESS likely to experience mutations, and those parts of the genome that experience fewer mutations tend to be the REALLY important parts of the genome that you wouldn’t want to be mutated because in those sections, mutations would most likely break genes that are very important to the organism.

***

"If mutation rates are low in the gene-coding DNA, then it will take even longer for new complex traits to arise by mutating functional genes. This exacerbates what Darwin-skeptics call the “waiting time” problem, where it takes too long for necessary mutations to arise — far longer than the amount of time allowed by the fossil record.

"Intelligent design proponents have already identified the waiting time problem as a fundamental mathematical obstacle to neo-Darwinian evolution. Our colleagues published a paper in the Journal of Theoretical Biology last year, “On the waiting time until coordinated mutations get fixed in regulatory sequences,” which did mathematical modelling of the waiting time to generate traits requiring N mutations to provide an advantage. The paper found a serious challenge to neo-Darwinism:

"[T]he fossil record is often interpreted as having long periods of stasis, interrupted by more abrupt changes and “explosive” origins. These changes include, for instance, the evolution of life, photo-synthesis, multicellularity and the “Avalon Explosion”, animal body plans and the “Cambrian Explosion”, complex eyes, vertebrate jaws and teeth, terrestrialization (e.g., in vascular plants, arthropods, and tetrapods), insect metamorphosis, animal flight and feathers, reproductive systems, including angiosperm flowers, amniote eggs, and the mammalian placenta, echolocation in whales and bats, and even cognitive skills of modern man. Based on radiometric dating of the available windows of time in the fossil record, these genetic changes are believed to have happened very quickly on a macroevolutionary timescale. In order to evaluate the chances for a neo-Darwinian process to bring about such major phenotypic changes, it is important to give rough but reasonable estimates of the time it would take for a population to evolve so that the required multiple genetic changes occur.

"Following the standards of the field, the study in Journal of Theoretical Biology adopted standard evolutionary assumptions that mutations are random — i.e., equally likely across the entire genome and occurring without respect to the needs of the organism. But the new study in Nature suggests that both these assumptions are false — and false in a way that probably makes it harder for neo-Darwinism to evolve new traits."

Comment: I left out the same material I presented in the last entry. The ID study used math formulas to show how many mutations would be theoretically required to end a stasis period. Using mutation rates, random mutations cannot work in the short historical fossil time recorded. Therefore directed mutations must occur. On this basis ID looks to a designing mind.

Evolution: mutations random or not? de novo forms

by David Turell @, Monday, August 01, 2022, 22:24 (843 days ago) @ David Turell

A study of novel forms:

https://phys.org/news/2022-08-sun-alternate-view-evolve.html

"Many crustaceans, including lobster, crabs, and barnacles, have a cape-like shell protruding from the head that can serve various roles, such as a little cave for storing eggs, or a protective shield to keep gills moist.

"This shell (carapace), it's been proposed, didn't evolve from any similar structure in the crustacean ancestor, but appeared de novo (or out of the blue) through somewhat random co-option of the genes that also specify insect wings.

"However, in a new study from the Marine Biological Laboratory (MBL), Research Associate Heather Bruce and Director Nipam Patel provide evidence for an alternate view: The carapace, along with other plate-like structures in arthropods (crustaceans, insects, arachnids, and myriapods) all evolved from a lateral leg lobe in a common ancestor.

"This evidence buttresses their proposal for a new concept of how novel structures evolve—one that suggests that they aren't so novel, after all. The study, on the carapace of the crustacean Daphnia, appears online in Current Biology.

"'How novel structures arise is a central question in evolution," Bruce says. "The prevailing idea, called gene co-option, is that genes that are functioning in one context, say to make insect wings, end up in an unrelated context, where they make, say, a carapace," says Bruce. "But here we show that the Daphnia carapace didn't just pop out of nowhere."

***

"'We are starting to realize that structures that don't look anything alike—wings, carapaces, tergal plates—are actually homologous," Bruce says. "That suggests they have a single origin that is way more ancient than anyone would have thought, way back in the Cambrian period, [500 million] years ago."

***

"In Bruce's view, these dormant rudiments—legs, plates, etc.—can persist over millions of years, as long as another repeat of the structure is still present somewhere else in the animal. And when the time is right, the structure may grow out again and take different forms in different species—a wing in an insect, say, or a carapace in a crustacean.

"'If an ancestral structure is no longer needed, nature probably just truncates or reduces that tissue rather than deleting it completely. But the tissue is still there and can be elaborated again in later lineages, and appear to us to be novel," Bruce says.

"'This kind of truncation is probably common in evolution because genetic networks are so interdependent, "Bruce explains. "If a genetic pathway or tissue were to be deleted, some other pathway or tissue would be affected."

"'I think cryptic persistence can be an explanation for a lot of 'novel' structures," Bruce says.

***

"'The ancient, common origin of all these plate-like structures [in arthropods] suggests the gene networks that pattern these structures are very evolvable and plastic. They are capable of generating an awesome amount of diversity," Bruce says."

Comment: the other alternative from this strained Darwinian approach is that this looks just like a designed process. The future changes carefully built into the beginning.

Evolution: earliest mammal ancestor found

by David Turell @, Monday, August 01, 2022, 23:16 (843 days ago) @ David Turell

Appears to come from a lizard line forerunner:

https://www.livescience.com/mammal-ancestor-hippo-lifestyle?utm_campaign=368B3745-DDE0-...

"An animal that lived before the dinosaurs looked like a rotund lizard with a very small head and had a hippo-like semiaquatic lifestyle, according to fossils that were recently excavated in France.

"The amphibious animal, which represents a previously unknown genus and species of mammal ancestor, measured about 12 feet (4 meters) long, researchers reported in the October issue of the journal Palaeo Vertebrata, published online in July. They dubbed the new species Lalieudorhynchus gandi; it lived about 265 million years ago on the Pangaea supercontinent, just before the era of the dinosaurs.

***

"From this partial but well-preserved skeleton, the paleontologists deduced that the primitive creature was a type of caseid — an extinct group of fossil reptiles that possessed mammalian traits and are thought to be mammal ancestors — in the genus Lalieudorhynchus. Described in the press release as a “chubby lizard” and as a 3.5-meter-long “pile of meat”, the creature lived during the Permian, a period that began about 299 million years ago and ended about 252 million years ago with the onset of the Triassic period (and the rise of the dinosaurs).

***

"'The highly diverse group of mammal ancestors was the dominant group before the dinosaur ages," Frederik Spindler, co-author of the study and scientific director at the Dinosaur Museum Altmühltal in Denkendorf, Germany, told Live Science. When Spindler examined the newfound fossils, he concluded that they belonged to a new species. There have been fewer than 20 species of caseids identified in the fossil record to date; most came from the United States and Russia, but some have recently been found in southern Europe, Spindler said.

***

"This newly identified creature is not a so-called missing link in any evolutionary lineage of the mammal family tree, but its status as one of the youngest caseids yet found may be significant for understanding mammalian evolution. "It increases the known diversity of large caseids, marking them as a very important herbivorous group," Spindler said. What's more, L. gandi could be the pinnacle of evolution for all caseids before they went extinct, meaning that the species had the most advanced features in the group, Spindler said." (my bold)

Comment: it is obvious mammals were fore deigned in the development of evolutionary stages. dhw will worry about the many branches that head into different directions. Not to worry, they al fit into ecosystems for a food supply for all, not just for humans.

Evolution: crocodiles ancient evolution

by David Turell @, Monday, November 20, 2023, 18:17 (367 days ago) @ David Turell

Related to birds:

https://phys.org/news/2023-11-unraveling-complex-history-crocodiles.html

There are about 28 living species of crocodilians found throughout the tropical and sub-tropical regions of the world.

But this is just a tiny fraction of the number of crocodile species that used to exist.

"A pair of new papers has been delving into this rich evolutionary history, tracking where this group originated and how it spread around the world, as well as exploring the origin of their typical slow growth. Researchers found that the larger, modern group of crocodilians likely first appeared in Europe up to 145 million years ago.

"Following on from this, the ancestors of crocodiles and alligators then split from each other in North America, with the ability for crocodiles to tolerate saltwater meaning that they were then able to spread much further around the world.

"'It seems most likely that the ancestors of today's alligators and crocodiles evolved in North America, and then subsequent to that alligatorids [which includes alligators and caimans] stay more or less within the Americas while crocodiles get everywhere else," explains Professor Paul Barrett, a paleontologist

***

"'Some of these animals were large predators that preyed on dinosaurs," explains Paul. "But others were very small, fleet-footed animals that were probably preying on things like insects. There were even herbivorous crocodilians of various types, with very complicated—almost mammal-like—teeth, that might have been chewing plants before swallowing."

"This included animals such as Simosuchus, which looked a bit like a short-snouted modern-day armadillo but was likely feeding on fruits, tubers and ferns. There were also purely marine predatory crocodilians like the thalattosuchians that had flippers instead of feet and some small, lightly-built runners like Terrestrisuchus that looked a bit like reptilian whippets.

***

"The fossils of an ancient crocodile-like relative dating to 220 million years ago seem to rule out the aquatic lifestyle theory. Despite being the earliest known crocodilian to show a slowed growth rate, this new animal lived way before crocodiles started exploring the water. But why this land-living animal evolved a slower metabolism is still up for debate.

"'It might be to do with the resources available at the time—they were living in reasonably resource-poor environments," explains Paul. "But interestingly, they are also living directly alongside the other big branch of archosaur evolution: the dinosaurs."

"'Dinosaurs were doing something completely different, which was to grow fast. So while today we have slow-growing crocs and fast-growing birds, that difference has existed between these two big groups since at least the Late Triassic. But the reasons why they adopted those different strategies is still guesswork."

"Paul and his colleagues were also able to trace back the origin of Crocodylomorpha. They showed that this group first appeared in what would become modern Europe, before the ancestors of crocodiles and alligators split somewhere in what is now North America. From here, the salt-adapted crocodiles were better able to spread across the world and colonize Africa, Asia and Oceania, while alligators and their relatives were typically limited to the Americas."

Comment: dinosaurs gave us crocs and birds. The diversification of both shows how life evolves to make more and more forms of each original type. That is why 99.9% of all forms are now extinct.

Evolution: land plant evolution from horizontal transfer

by David Turell @, Tuesday, March 01, 2022, 17:51 (996 days ago) @ David Turell

New study finds the genes:

https://phys.org/news/2022-03-bacteria-genes-gave-ancient-traits.html

"Genes jumping from microbes to green algae hundreds of millions of years ago might have driven the evolution of land plants, researchers report March 1 in the journal Molecular Plant. Their analysis reveals that hundreds of genes from bacteria, fungi, and viruses have been integrated into plants, giving them desirable traits for a terrestrial life.

***

"To investigate the role of HGT in plant evolution, the researchers scanned the genomes of 31 plants. They included species from all four plant groups, including mosses, ferns, and trees, as well as charophytes, a group of green algae related to modern land plants. They found that nearly 600 gene families in modern plants—far more than were previously thought—were transferred from other organisms, especially from microbes such as bacteria and fungi.

"In addition, the team identified two major episodes of HGT during the early evolution of charophyte algae and the origin of land plants, when over a hundred gene families hopped from microbes to plants.

"Our finding suggests that HGT plays a significant role in land-plant evolution. Compared with mutations from vertical gene transfer, HGT enables plants to gain new traits rapidly, and some of these new traits could help plants adapt to a drastically different environment, like when they moved from water to land," Huang says.

"Many of the genes acquired are known to perform important biological functions in plants. For example, the late embryogenesis abundant genes, which came from bacteria, helps plants adapt to a drier environment. The ammonium transporter gene, acquired from fungi, helps plants absorb nitrogen from soil for growth.

"'Almost everyone has experienced teary eyes when chopping an onion. We found that the gene in onions responsible for producing the tear-jerking agent actually came from bacteria. That's very interesting because we are all aware of this reaction but didn't realize it's a result from HGT until now," Huang says. "There're many more examples like this.'"

Comment: seems like a likely event. An easy dabble for God.

Evolution: more magic retinal design

by David Turell @, Thursday, March 03, 2022, 14:46 (994 days ago) @ David Turell

Mitochondria focus light:

https://www.sciencealert.com/mitochondria-in-the-mammalian-eye-act-as-microlenses-to-he...

"Now, a study has added a surprising new lens to this process. In cone receptors, mitochondria – which you might know as the powerhouse of the cell – appear to be acting like little 'microlenses' to help deliver photons to the nerve cells.

***

"This seemed particularly weird to the researchers, as mitochondria are positioned in the light-sensitive outer segment of the cones in our retina. This means that light can hit the mitochondria directly, which could potentially cause photons to scatter off in weird directions, or even be absorbed, stopping light from reaching nerve cells altogether.

"'These complex, lipid-rich organelles are also poised to affect light passage into the outer segment," write the researchers, led by National Eye Institute scientist John Ball.

"'Here, we show, via live imaging and simulations, that despite this risk of light scattering or absorption, these tightly packed mitochondria 'focus' light for entry into the outer segment and that mitochondrial remodeling affects such light concentration."

"'The lens-like function of mitochondria also may explain the phenomenon known as the Stiles-Crawford effect," said Ball.

"The Stiles-Crawford effect is a property of cone receptors where light that enters the center of the pupil produces more of a response in our cone cells than light entering closer to the edge.

"The team found experimentally and using computer models that mitochondrial interaction with light matched the Stiles-Crawford effect, meaning the mitochondria could be the cause.

"'This 'microlens'-like feature of cone mitochondria delivers light with an angular dependence akin to the Stiles-Crawford effect, providing a simple explanation for this essential visual phenomenon that improves resolution," the team wrote."

Comment: more wonders of the 'wrongly designed' retina atheists love to discuss.

Evolution: land plant evolution required changes

by David Turell @, Tuesday, November 15, 2022, 19:35 (737 days ago) @ David Turell

Solution found:

https://www.sciencedaily.com/releases/2022/11/221114190602.htm

"The earliest land plants were small -- just a few centimeters tall at most -- and restricted to moist, boggy habitats around streams and ponds. Around 400 million years ago, however, plants developed vascular systems to extract water more efficiently from the soil and use it for photosynthesis, a transition that would forever alter the Earth's atmosphere and ecosystems. A team of researchers have now solved a 100-year-old paleontology mystery: How did ancient plants emerge from swamps and riverbanks to new habitats with limited access to water?

***

"Over the past decade, Brodersen and colleagues have explored the implications of how modern plant vascular systems are constructed, especially within the context of drought. When plants begin to dry out, air-bubbles get stuck in the xylem, which is the specialized tissue that transports water and nutrients from the soil to stems and leaves. The bubbles block the movement of water. Left unchecked, they spread throughout the network, disconnect plants from the soil, and ultimately lead to plant death. Avoiding the formation and spread of these bubbles is of critical importance for tolerating drought today, and the research team applied this same thinking to explain the patterns of vascular organization in the fossil record.

"The cylinder-shaped vascular systems in the earliest land plants, which were similar to a bundle of straws, had initially served them well in their early watery habitats. But as they moved onto land with fewer water resources, the plants had to overcome drought-induced air bubbles. Early land plants did this by reconfiguring the ancestral, cylindrical-shaped xylem into more complex shapes that prevented air bubbles from spreading.

***

"'It didn't just sort of happen. There's actually a good evolutionary reason," says Bouda. "There was strong pressure from drought that made it happen. That was the hundred-year-old riddle, which we've now answered." (my bold)

***

These changes happened rather rapidly -- in paleontological timeframes, that is -- over approximately 20-40 million years. The driving forces behind the change to plant vascular structure could help inform research in breeding drought-resistant plants, helping to build resilience to the impacts of climate change and address production-related food insecurity issues. (my bold)

Comment: note my bolds. I expect God helped with the best design.

Evolution: problems for Darwinism

by David Turell @, Tuesday, November 15, 2022, 22:38 (737 days ago) @ David Turell

A cogent discussion with whale and hippo comparisons:

https://salvomag.com/post/converging-on-a-creator

"Despite great advances in our understanding of nature, the living world is still rich in mystery. One such enigma is the case of convergent evolution, the notion that life appears to have hit on the same or similar solutions at the genetic and organismic level, many times in its long history and across totally unrelated animal phyla.

***

"Gould held that if the tape of life were to be re-played from scratch, the history of life on Earth would be completely different from the one we now see and that entirely different creatures would emerge to fill our planet’s many niches. In other words, examples of repeated evolutionary paths ought to be non-existent or rare.

***

"But since Gould proposed these ideas in his popular 1989 work Wonderful Life, biologists have unearthed an enormous number of cases where completely unrelated species hit on the same solutions time and time again. This casts severe doubt on the contention that the history of life on Earth is really historically contingent.

"The problem of convergent evolution has recently been compounded by some astonishing research findings from a team of scientists who conducted studies on two unrelated species; the hippopotamus and the whale. Both species are thought to have diverged from a common ancestor some 53 million years ago, but they share a number of anatomical features including hairless bodies, underwater parturition, lack of sebaceous glands, and the ability to detect both the intensity and directionality of sound waves under water.

***

"In particular, the team concentrated on studying the skin cells in both hippos and whales, because, they reasoned, both express a number of genes thought to be important to adapting to life in the water. In particular, the team looked at a set of 10 genes expressed in their skin cells which were thought to be crucially involved in surviving in aquatic environments. What they found shocked them. The same 10 genes were inactivated in both hippos and whales! But here’s the kicker; those 10 genes were silenced in whales some 16 million years before the same genes were inactivated in hippos! In other words, those same 10 skin genes were silenced independently in both lineages.

"Responding to these extraordinary findings, lead author of the study Mark Springer said, “None of the inactivating mutations that would have suggested a common aquatic ancestry are shared between these two lineages.”

The silencing of these genes in whales and hippos must have occurred in a highly coordinated manner. For this reason, it’s simply amazing to think that the coordinated loss of the same 10 genes occurred independently in both whales and hippos over such a short period of geological time. To my mind, this is yet another failed prediction of the evolutionary paradigm.

"According to Christian biochemist, Fazale (Fuz) Rana, who has written extensively on the problem of biological convergence, “The evolutionary paradigm fails in the face of the discovery of ‘repeatable’ evolution while biblical creation gains support from this phenomenon. What is interpreted as ‘repeatable’ evolution––morphologically indistinct and genetically unique organisms––is what one would expect if a single Creator has generated life throughout Earth’s history.”

"Another issue these research findings unveil is the waiting time problem highlighted by scientists within the Intelligent Design movement. As a team of theorists from Cornell University pointed out some years ago, just two coordinated mutations in such long-lived creatures as hippos and whales would take 200 million years to occur by chance.

"Using the same reasoning, how long might it take 10 identical genes to be knocked out in the same creatures? The answer must be in the billions of years at the very least, and yet evolutionists claim hippos lost those ten genes in only 16 million years after they diverged from whales. This is far too short a time to make their case credible.

"In summary, these new findings from mainstream biological research greatly bolster the case for design in biological systems and further weaken the evolutionary worldview, in which scientists must resort to magic to explain away the extraordinary convergence of biological systems, both at the anatomical and genetic level."

Comment: a firm case for convergence, as supported by Simon Conway-Morris, requiring a designer God. Think about the Darwin approach which says if an animal enters water and develops an aquatic lifestyle it will adapt. Well whales and hippos from the same ancestor, have each fully adapted in their own way, but hippos never went as far as whales, which shows full adaptation is not a required result. Evidence Darwinism is wrong.

Evolution: problems for Darwinism

by dhw, Wednesday, November 16, 2022, 12:12 (736 days ago) @ David Turell

(Hippos and whales)

QUOTE: Both species are thought to have diverged from a common ancestor some 53 million years ago, but they share a number of anatomical features including hairless bodies, underwater parturition, lack of sebaceous glands, and the ability to detect both the intensity and directionality of sound waves under water.

Why “but”? Shared anatomical features are evidence that they did diverge from a common ancestor!

QUOTES: those 10 genes were silenced in whales some 16 million years before the same genes were inactivated in hippos! In other words, those same 10 skin genes were silenced independently in both lineages.
"Responding to these extraordinary findings, lead author of the study Mark Springer said, “None of the inactivating mutations that would have suggested a common aquatic ancestry are shared between these two lineages.

I don’t understand. They had the SAME genes, and these were inactivated. How does that come to mean they didn’t originally share the same genes?

QUOTE: The silencing of these genes in whales and hippos must have occurred in a highly coordinated manner. For this reason, it’s simply amazing to think that the coordinated loss of the same 10 genes occurred independently in both whales and hippos over such a short period of geological time.

16 million years is hardly a short time, but what difference does the time make anyway? (See the next entry).Shared genes suggest common ancestry.

QUOTE: "Another issue these research findings unveil is the waiting time problem highlighted by scientists within the Intelligent Design movement. As a team of theorists from Cornell University pointed out some years ago, just two coordinated mutations in such long-lived creatures as hippos and whales would take 200 million years to occur by chance.”

We have long since agreed that in any context, the complexities of speciation by random mutations is unlikely, and this is where Shapiro’s theory of intelligent cells as the drivers of evolutionary change comes into its own. The time factor simply disappears, just as it does with the designer God theory (and of course ID-ers can attribute the invention of cellular intelligence to God). Meanwhile, if God did it, why did it take him so long? And if we follow David’s theory, why was the inactivation of 10 genes 16 million years apart an absolute requirement for the design of sapiens and our food supply?

Evolution: problems for Darwinism

by David Turell @, Wednesday, November 16, 2022, 17:00 (736 days ago) @ dhw

(Hippos and whales)

QUOTE: Both species are thought to have diverged from a common ancestor some 53 million years ago, but they share a number of anatomical features including hairless bodies, underwater parturition, lack of sebaceous glands, and the ability to detect both the intensity and directionality of sound waves under water.

Why “but”? Shared anatomical features are evidence that they did diverge from a common ancestor!

QUOTES: those 10 genes were silenced in whales some 16 million years before the same genes were inactivated in hippos! In other words, those same 10 skin genes were silenced independently in both lineages.
"Responding to these extraordinary findings, lead author of the study Mark Springer said, “None of the inactivating mutations that would have suggested a common aquatic ancestry are shared between these two lineages.

dhw: I don’t understand. They had the SAME genes, and these were inactivated. How does that come to mean they didn’t originally share the same genes?

The point is the deactivating genes differ. That means convergent evolution occurred, which I remind you is considered a proof of a designing God.


QUOTE: The silencing of these genes in whales and hippos must have occurred in a highly coordinated manner. For this reason, it’s simply amazing to think that the coordinated loss of the same 10 genes occurred independently in both whales and hippos over such a short period of geological time.

dhw: 16 million years is hardly a short time, but what difference does the time make anyway? (See the next entry).Shared genes suggest common ancestry.

QUOTE: "Another issue these research findings unveil is the waiting time problem highlighted by scientists within the Intelligent Design movement. As a team of theorists from Cornell University pointed out some years ago, just two coordinated mutations in such long-lived creatures as hippos and whales would take 200 million years to occur by chance[/i].”

dhw: We have long since agreed that in any context, the complexities of speciation by random mutations is unlikely, and this is where Shapiro’s theory of intelligent cells as the drivers of evolutionary change comes into its own. The time factor simply disappears, just as it does with the designer God theory (and of course ID-ers can attribute the invention of cellular intelligence to God). Meanwhile, if God did it, why did it take him so long? And if we follow David’s theory, why was the inactivation of 10 genes 16 million years apart an absolute requirement for the design of sapiens and our food supply?

The quote refers to the 'timing' problem, in that study of mutations taking time indicate it would take much longer unless God designed. As for requirement, until you recognize the point that if it is here God did it for His own reasons, you will not understand my reasoning about God.

Evolution: problems for Darwinism

by dhw, Thursday, November 17, 2022, 09:27 (736 days ago) @ David Turell

QUOTE: None of the inactivating mutations that would have suggested a common aquatic ancestry are shared between these two lineages.”

dhw: I don’t understand. They had the SAME genes, and these were inactivated. How does that come to mean they didn’t originally share the same genes?

DAVID: The point is the deactivating genes differ.

I quote: … "those 10 genes were silenced in whales some 16 million years before the same genes were inactivated in hippos!"

DAVID: That means convergent evolution occurred, which I remind you is considered a proof of a designing God.

I don’t see why. It is common sense that if organisms are faced with similar problems, they will find similar solutions! But it is fair to argue that the mechanisms for ALL of life and evolution are so complex that they support the case for design.

QUOTE: "Another issue these research findings unveil is the waiting time problem highlighted by scientists within the Intelligent Design movement. As a team of theorists from Cornell University pointed out some years ago, just two coordinated mutations in such long-lived creatures as hippos and whales would take 200 million years to occur by chance[/i].”

dhw: We have long since agreed that in any context, the complexities of speciation by random mutations is unlikely, and this is where Shapiro’s theory of intelligent cells as the drivers of evolutionary change comes into its own. The time factor simply disappears, just as it does with the designer God theory (and of course ID-ers can attribute the invention of cellular intelligence to God). Meanwhile, if God did it, why did it take him so long? And if we follow David’s theory, why was the inactivation of 10 genes 16 million years apart an absolute requirement for the design of sapiens and our food supply?

DAVID: The quote refers to the 'timing' problem, in that study of mutations taking time indicate it would take much longer unless God designed.

The reference is to chance (now bolded). Shapiro’s intelligent cells do not operate by chance.

DAVID: As for requirement, until you recognize the point that if it is here God did it for His own reasons, you will not understand my reasoning about God.

I understand perfectly well that if your God exists, he will have his own reasons. I simply find the single reason you impose on him – namely, that every extinct and extant evolutionary change, ecosystem, lifestyle, strategy, natural wonder etc was required for the design of sapiens plus food – to be totally unreasonable.

Evolution: problems for Darwinism

by David Turell @, Thursday, November 17, 2022, 19:26 (735 days ago) @ dhw

QUOTE: None of the inactivating mutations that would have suggested a common aquatic ancestry are shared between these two lineages.”

dhw: I don’t understand. They had the SAME genes, and these were inactivated. How does that come to mean they didn’t originally share the same genes?

DAVID: The point is the deactivating genes differ.

I quote: … "those 10 genes were silenced in whales some 16 million years before the same genes were inactivated in hippos!"

DAVID: That means convergent evolution occurred, which I remind you is considered a proof of a designing God.

dhw: I don’t see why. It is common sense that if organisms are faced with similar problems, they will find similar solutions! But it is fair to argue that the mechanisms for ALL of life and evolution are so complex that they support the case for design.

Full agreement.


QUOTE: "Another issue these research findings unveil is the waiting time problem highlighted by scientists within the Intelligent Design movement. As a team of theorists from Cornell University pointed out some years ago, just two coordinated mutations in such long-lived creatures as hippos and whales would take 200 million years to occur by chance[/i].”

dhw: We have long since agreed that in any context, the complexities of speciation by random mutations is unlikely, and this is where Shapiro’s theory of intelligent cells as the drivers of evolutionary change comes into its own. The time factor simply disappears, just as it does with the designer God theory (and of course ID-ers can attribute the invention of cellular intelligence to God). Meanwhile, if God did it, why did it take him so long? And if we follow David’s theory, why was the inactivation of 10 genes 16 million years apart an absolute requirement for the design of sapiens and our food supply?

DAVID: The quote refers to the 'timing' problem, in that study of mutations taking time indicate it would take much longer unless God designed.

dhw: The reference is to chance (now bolded). Shapiro’s intelligent cells do not operate by chance.

But here your Shapiro cells took 16 million years! All theories must accept the same timing problem


DAVID: As for requirement, until you recognize the point that if it is here God did it for His own reasons, you will not understand my reasoning about God.

dhw: I understand perfectly well that if your God exists, he will have his own reasons. I simply find the single reason you impose on him – namely, that every extinct and extant evolutionary change, ecosystem, lifestyle, strategy, natural wonder etc was required for the design of sapiens plus food – to be totally unreasonable.

Stick with the first sentence above bolded. All the rest follows logically when you also accept that everything on Earth is God's doing. It is His evolution with His daed ends. And you really don't negate Adler's point that the appearance of humans proves God existence

Evolution: how life evolved the Earth

by David Turell @, Friday, November 18, 2022, 15:33 (734 days ago) @ David Turell

A very poetic and dramatic essay showing how the appearance of life totally reshaped the Earth:

https://aeon.co/essays/the-insight-of-darwins-work-on-corals-worms-and-co-evolution?utm...

"I want to start with a proposition: if Earth had never come alive, it would be a profoundly different world. Conversely: the planet of today has, to a remarkable extent, been made what it is by the activities of lifeforms. Over the course of the planet’s long history, a history that extends back more than 4.5 billion years, lifeforms have shaped the rocks, the water, the air, even the colour of the sky. A Never-Life Earth would not even have as many different kinds of minerals.

"This is the portrait painted by the modern science of life and Earth, a fusion of biology and geology that seeks to understand all the planets that Earth has been, and that unites such apparently unrelated fields as the study of bacterial metabolism with the physics of atmospheres. The central observation of this undertaking is that, over time, lifeforms have profoundly altered the fabric of this planet, and this, in turn, has altered the circumstances in which lifeforms evolve.

***

"Darwin, of course, is famous for his work on evolution. His book On the Origin of Species (1859) laid out a wealth of evidence that evolution occurs, and proposed a mechanism – natural selection – for how it does so. Although much has been learned since, and many of his ideas have been extended, corrected or refined, the Origin remains the founding text of modern biology, and is the pinnacle of Darwin’s work. But Darwin’s first scientific monograph and his last – the two bookends of his thoughts, so to speak – were both about how animals have, over vast spans of time, transformed the landscape.

"These two works of biogeology – one on coral reefs, the other on earthworms – were, as far as I know, the first detailed studies of the subject ever published. On casual inspection, they appear to be unrelated undertakings, just part of Darwin’s long and eclectic list of interests, along with barnacles, orchids, carnivorous plants, peacocks’ tails, the emotions of humans and other animals, the volcanoes of South America, and so on. This impression is enhanced by the fact that the two works differ greatly in style and were published almost 40 years apart – The Structure and Distribution of Coral Reefs appeared in 1842, while his book on earthworms, The Formation of Vegetable Mould, Through the Action of Worms, with Observations on Their Habits, came out in 1881, about six months before he died.

***

"Long before animals or plants evolved, moreover, the planet was being sculpted by much smaller lifeforms – bacteria and archaea. (Of these, bacteria are far better known. That’s because archaea were not identified until the 1970s. Seen through a microscope, archaea superficially resemble bacteria – both are small and tend to take shapes such as rods or spheres. So it was not until the development of molecular tools that it became clear that the two groups are distinct.) I will not enumerate all the effects these lifeforms have had, as it would take too long. Instead, I will give just two examples of their impacts. First, certain species of archaea are responsible for the biological generation of methane, a greenhouse gas, which warms the climate. Second, no conversation about the impacts of lifeforms upon the planet would be complete without mention of the cyanobacteria. These lifeforms, formerly known as blue-green algae, are, in my view, the most important lifeforms in the history of the planet. At the time they evolved, more than 2.3 billion years ago, Earth had no oxygen molecules in the air to speak of. Instead, all the oxygen atoms were tied up in the water and the rocks. Cyanobacteria evolved to use the radiant energy of the Sun to split water molecules apart, a process that roughly halfway through the history of Earth would result in an atmosphere that contained oxygen molecules.

***

"...if we are distinguished by the scale and speed of our impacts, we are also distinguished by our awareness. As far as anyone can tell, humans are the only lifeforms that have ever been able to study the world and know what we do – and that brings opportunity. Perhaps, together, we can reduce our impacts and develop a new ethos of planetary care.

"I would like to end on a personal note. Contemplating the entwined histories of life and Earth has changed the way I see the world. It has heightened my interest in all lifeforms, no matter how humble, and it has enhanced my sense of connection to the air, the water, the rocks. I find it majestic to think that the air I breathe and the rocks I tread have been shaped by countless lifeforms that lived and died ages ago. To me, this view of life and Earth is poignant, beautiful, and grand."

Comment: a beautifully written essay, extremely long, containing a biography of Darwin's magnificent research in many directions. It clearly shows how the appearance of life totally transformed the Earth.

Evolution: how water evolved the Earth

by David Turell @, Friday, November 18, 2022, 16:46 (734 days ago) @ David Turell

A meteorite study:

https://www.sciencenews.org/article/meteorite-uk-winchcombe-earth-water-asteroids

"An analysis of those fragments now shows that the meteorite came from the outer solar system, and contains water that is chemically similar to Earth’s, scientists report November 16 in Science Advances. How Earth got its water remains one of science’s enduring mysteries. The new results support the idea that asteroids brought water to the young planet (SN: 5/6/15).

***

"Other meteorites have been recovered after being tracked from space to the ground, but never so quickly (SN: 12/20/12).

***

"After collecting about 530 grams of meteorite from Winchcombe and other sites, including a sheep field in Scotland, King and colleagues threw a kitchen sink of lab techniques at the samples. The researchers polished the material, heated it and bombarded it with electrons, X-rays and lasers to figure out what elements and minerals it contained.

***

"The meteorite is a type of rare, carbon-rich rock called a carbonaceous chondrite, the team found. It came from an asteroid near the orbit of Jupiter, and got its start toward Earth around 300,000 years ago, a relatively short time for a trip through space, the researchers calculate.

"Chemical analyses also revealed that the meteorite is about 11 percent water by weight, with the water locked in hydrated minerals. Some of the hydrogen in that water is actually deuterium, a heavy form of hydrogen, and the ratio of hydrogen to deuterium in the meteorite is similar to that of the Earth’s atmosphere. “It’s a good indication that water [on Earth] was coming from water-rich asteroids,” King says.

"The meteorite is a type of rare, carbon-rich rock called a carbonaceous chondrite, the team found. It came from an asteroid near the orbit of Jupiter, and got its start toward Earth around 300,000 years ago, a relatively short time for a trip through space, the researchers calculate.

"Chemical analyses also revealed that the meteorite is about 11 percent water by weight, with the water locked in hydrated minerals. Some of the hydrogen in that water is actually deuterium, a heavy form of hydrogen, and the ratio of hydrogen to deuterium in the meteorite is similar to that of the Earth’s atmosphere. “It’s a good indication that water [on Earth] was coming from water-rich asteroids,” King says."

Researchers also found amino acids and other organic material in the meteorite pieces. “These are the building blocks for things like DNA,” King says. The pieces “don’t contain life, but they have the starting point for life locked up in them.” Further studies can help determine how those molecules formed in the asteroid that the meteorite came from, and how similar organic material could have been delivered to the early Earth.

Comment: since early Earth was bombarded by asteroids it isa valid theory. Rock-bound amino acids can't just combine into life. What dissolved the rock? See entry on evolving the Earth as life appeared.

Evolution: deep sea extremophiles

by David Turell @, Thursday, November 10, 2022, 23:50 (742 days ago) @ David Turell

A new discovery in the deep sea of extremely weird fish and other forms:

https://www.livescience.com/new-map-cocos-keeling-islands?utm_campaign=368B3745-DDE0-4A...

"Researchers recently completed a 35-day expedition around the Cocos Islands, an archipelago southwest of the Indonesian island of Sumatra. The islands are now the center of the Cocos (Keeling) Islands Marine Park, a 180,330 square-mile (467,054 square kilometers) protected area that has never before been mapped in high resolution. According to the Museums Victoria Research Institute(opens in new tab), the mapping revealed underwater mountain peaks and weird marine life, such as a blind, gelatinous eel that was previously unknown to science.

"'The fish are the standout deep-sea fashionistas," expedition chief scientist Tim O'Hara(opens in new tab) of the Museums Victoria Research Institute told Live Science in an email. "They come in all shapes and sizes, with light organs, lures, rays modified into tripods or camouflage appendages, and huge (or missing) eyes. Each species superbly adapted to the extreme deep-sea environments."

***

"The researchers collected footage and samples of the complex web of life around the atolls. They found the blind eels 3.1 miles (5 km) below the surface. In those depths, the scientists also found an array of bizarre fish, including tribute spiderfish (Bathypterois guentheri), which have weird, elongated fins that act like stilts, enabling the fish to perch above the ocean floor and capture small crustaceans as they drift by.

"The scientists also observed pelican eels (Eurypharynx pelecanoides), which have huge, loosely hinged jaws that enable them to swallow prey bigger than themselves, and toothy Sloane's viperfish (Chauliodus sloani), which have mouths bristling with needle-sharp teeth and light-up organs along their sides to attract prey. Also at home in the marine protected area are highfin lizardfish (Bathysaurus mollis), deepwater bottom-feeders whose reproductive organs combine ovaries and testes — both are reproductively active at the same time.

"'The sheer diversity of the invertebrate fauna was also spectacular," O'Hara said. "We collected every family of black corals, and hundreds of species of crustaceans and echinoderms. Many of these species will be new to science.'"

Comment: living forms are so adaptable they can take any form they wish to survive in specific environments. They may start out much more like other simple forms and then speciate into the permanent adaptation, remembering I think God speciates.

Evolution: Archaea motor analyzed

by David Turell @, Monday, February 07, 2022, 18:46 (1018 days ago) @ David Turell

Has two parts:

https://phys.org/news/2022-02-biologists-smallest-propeller-earth.html

"Some archaea propel themselves to incredible speeds by rotating a spiral-shaped filament called an archaellum.

"Using a powerful cryo-electron microscope, the new study examined this closer than ever before.

***

"'M. villosus swims at a speed of about 500 body lengths per second," said Dr. Lavinia Gambelli, of Exeter's Living Systems Institute (LSI).

"'Considering that the tiny cell is only about one micrometer in size, this means half a millimeter in one second.

***

"The study discovered that the filament used by M. villosus is made up of thousands of copies of two alternating proteins, whereas previously investigated filaments showed only one protein.

"This suggests that the architecture and assembly of an archaellum is more complex than previously thought.

"The researchers also identified two major structural elements that enable the archaellum filament to move, propelling the cell at high speed."

Comment: the archaellum has an internal rotor just like bacteria. Not surprising as the ancestor for bacteria. Irreducibly complex system must have been designed

Evolution: carnivorous plant origin

by David Turell @, Thursday, March 10, 2022, 00:19 (988 days ago) @ David Turell

Still not clear:

https://www.smithsonianmag.com/science-nature/how-carnivorous-plants-evolved-180979697/...

"...carnivorous plants are having another big moment as researchers begin to get answers to one of botany’s great unsolved riddles: How did typically mild-mannered flowering plants evolve into murderous meat-eaters?

***

"Quirky though it is, carnivory has evolved repeatedly over the 140 million-plus years that flowering plants have been around. The adaptation arose independently at least 12 times, says Tanya Renner, an evolutionary biologist at Penn State.

***

"Today there are some 800 known carnivorous species. Some, like pitcher plants and many sundews, are passive receivers of prey — albeit with ingenious adaptations such as slippery rims and gluey-tipped hairs that help to secure a meal. Others are more active: Some sundews curl inward, nudging prey into the trap’s stickier center, while a few have an outer ring of fast-moving tentacles that hurl victims to their doom. Most sophisticated of all is the Venus flytrap, Dionaea muscipula, with its sensitive trigger hairs and snap-traps that can distinguish the touch of an insect from a falling raindrop or dead leaf and can judge the size of prey and respond accordingly.

"Despite huge differences in shape and form and mode of killing, all traps are modified leaves or parts of leaves. “That means these plants not only get nutrients from a different source but by a different route, primarily through their leaves rather than their roots,” says Renner.

***

"Many features of the carnivorous lifestyle have yet to give up their genetic secrets. But studies of two of its grislier elements — digestion and absorption — are revealing how evolution repurposed existing genes, putting some to work in new places and giving others new functions and the odd tweak to suit them better to their new roles. In many cases, plants that evolved carnivory entirely independently have repurposed the same genes. Faced with the problem of consuming flesh, they all hit on the same solution, Albert says. And central to the transformation was the plant’s age-old system of defense.

"Back in the 1970s, researchers recognized that the digestive fluid they found in traps contained enzymes that functioned in very similar ways to many of the chemical weapons that plants wield against harmful bacteria, fungi and hungry herbivorous insects. Initially, it wasn’t clear whether carnivorous plants made the enzymes themselves or if microbes living in their traps did. Since then, botanists have confirmed that carnivorous plants do produce many of those enzymes and have discovered dozens more.

***

"The roster of enzymes includes chitinases, which break down the chitin of insect exoskeletons; flesh-dissolving proteases, which break down proteins; and purple acid phosphatase, which enables plants to extract usable phosphorus from their victims’ deconstructed corpses. All played roles in the ubiquitous and ancient defenses of flowering plants. “The genes for those enzymes were repurposed when plants started to eat the things they were originally protecting themselves from,” says Albert. “Chitinases most likely were for defense against fungi, which have chitin in their cell walls.

***

"Evolution’s tendency to adopt and adapt existing tools goes beyond digestion. As chitin, proteins and DNA are broken into smaller molecules, the trap must move them from the outside world to the inside of the plant. In ordinary plants, uptake of nutrients is the job of a root, where transporter proteins continually shuttle them from the soil into the plant. “You might not expect to find those proteins working in a leaf,” says Renner.

***

"What came as more of a surprise was the discovery that whenever and wherever a new line of carnivores arose, evolution worked on the same genes.

***

"All of them, it turned out, had repurposed the same ancient enzymes — matching ones identified previously in the Venus flytrap. Between them, these five species represent three independent lines of carnivores. This was a classic case of convergent evolution, says Albert.

***

"As they continue to explore carnivory, researchers are identifying many more enzymes. “But time and time again we’re finding that they have similar functions across distantly related species,” says Renner, who heads a major investigation into the role of co-option in the making of meat-eaters. Yet while that bolsters the idea that carnivorous plants acquired their new digestive skills in much the same way, there’s growing suspicion that the same might not be true for the all-important mechanism that controls the whole operation by switching on the right genes at the right time." (my bold)

Comment: Note the bold. What controlled the 'whole operation' of coordinating new gene functions all at the same time. I cannot imagine this developed stepwise since partial change had no survival advantage. Back to God as the designer.

Evolution: special genes for symbiosis?

by David Turell @, Tuesday, April 26, 2022, 19:03 (940 days ago) @ David Turell

A new bacterial study:

https://www.quantamagazine.org/ancient-genes-for-symbiosis-hint-at-mitochondrias-origin...

"Was the addition of mitochondria a first step in the formation of complex cells or one of the last? A new study of bacteria tries to answer this contentious question in evolutionary biology.

***

"Scientists still understand relatively little about what happened during that transformation. One of the central conundrums is how and when our eukaryotic ancestor acquired its mitochondria, the powerhouse organelles that generate the cell’s energy. The mitochondrion was clearly once an independent bacterium, until some host cell (an archaeon or descendant of one, from all the evidence) engulfed it and turned it into a permanent symbiotic partner.

"But the way eukaryotic cells engulf bacteria is energetically costly; it involves extensive and rapid remodeling of the cytoskeleton, the protein scaffolding beneath the cell membrane. A cell almost needs to possess mitochondria to do it, since mitochondria can wring about 18 times as much energy from a molecule of glucose as glycolysis and fermentation, the alternative metabolic processes. So scientists debate which came first: the mitochondrion or the engulfment process, known as phagocytosis.

"The two options suggest vastly different origin stories for eukaryotes: Was the mitochondrion an afterthought, a late arrival in the evolution of the first eukaryote? Or did it come early, with its spectacular energy-generating powers, and drive the changes in our ancestor?

"A recent paper in Molecular Biology and Evolution provides an intriguing peek into what might have happened when this chicken-or-egg dilemma played out more than 1.5 billion years ago. The researchers sequenced the DNA of more than 30 species of parasitic and symbiotic bacteria that, when engulfed by eukaryotic cells, avoid being digested and live off the resources of their hosts. The ability to dwell within eukaryotic cells, the scientists realized, seemed strikingly older than expected. It suggests — with some important caveats — that some version of phagocytosis predated mitochondria, setting the stage for the revolution to come.

***

"Guy and his colleagues sequenced the genes of members of Legionellales ranging from the Legionnaires’ disease pathogen to bacteria discovered by expeditions trawling the ocean for exotic microbes. Unsurprisingly, the proteins that the parasites used to shroud their presence and extract nutrients from their hosts varied substantially. But the researchers also found that nearly all the Legionellales deployed these proteins with fundamentally the same molecular machinery, called the Type IVB secretion system, which they seemingly inherited from a shared ancestor countless generations ago.

***

"... Guy and his colleagues tentatively dated the origin of the Legionellales group to 1.9 billion years ago.

"That’s a provocative number. If the group is that old and it inherited its machinery for hijacking eukaryotic cells from its earliest shared ancestor, this suggests that there were eukaryotic cells capable of phagocytosis to infect.

"But many current estimates, based on fossils and chemical evidence, place the first appearance of cells with mitochondria nearly half a billion years later. The timing lends credence, the researchers suggest, to the theory that mitochondria were a late addition to evolving eukaryotes.

***

“'The history of life is written in genomes; we just have to learn how to read it,” said Martin.

"To understand how this fundamental transition happened, scientists may have to look at the problem from new angles. For instance, says Snel, it’s commonly thought that the first big change in the evolution of eukaryotes, whatever it was, set the stage for everything else.

"But the last addition to our ancestors’ toolkit may prove even more essential to understanding eukaryotes. “Whatever the final step was, it caused the extinction of all the other competitors. Maybe that was the most important,” said Snel.

“'Scientists like a good mystery,” he said. “I just want to know what happened.'”

Comment: An intersting approach to a tough problem. Looking at God, perhaps this is a sign of pre-planning for a future necessary event.

Evolution: mutational clocks vary with size

by David Turell @, Tuesday, April 26, 2022, 23:43 (940 days ago) @ David Turell

Amazing new finding:

https://www.livescience.com/mutational-clocks-aging-in-different-mammals?utm_source=Sma...

"Animals carry "mutational clocks" in their cells that dictate how quickly their DNA picks up mutations. And across species, animals tend to die once they've hit a certain number of mutations, new research finds.

"It turns out that, in long-lived mammals like humans, these mutational clocks tick slower than they do in short-lived mammals like mice, meaning humans reach that threshold number of mutations at a later age than mice do. This discovery, the researchers said, could help solve a long-standing mystery in biology.

"This mystery, known as Peto's paradox, describes a perplexing phenomenon that has defied explanation since the 1970s. At that time, scientists knew that animal cells accrued mutations in their DNA over time, and that as the number of mutations increased, so too did the risk of those cells turning cancerous. On paper, this suggests that the world's longest-living and largest animals should face the highest risk of cancer, because the chance of picking up cancer-causing mutations increases over time and as the total number of cells in an organism goes up.

"But oddly enough, large, long-lived animals develop cancer at similar rates as tiny, short-lived creatures — this is Peto's paradox. Now, in a new study, published April 13 in the journal Nature, scientists offer a partial potential solution to this puzzle: They discovered that short- and long-lived mammals both accumulate a similar number of genetic mutations over their lifespans, but the long-lived animals do so at a far slower rate.

***

"Through their analysis, the authors discovered that, just like in humans, the crypt cells [of colonic mucosa]of other mammals also accrue mutations at a constant rate, year to year. But what was striking was that this mutation rate differed drastically between species. Human crypts accumulated the lowest number of new mutations each year, at only 47, while mouse crypts picked up the most, at a whopping 796 per year.

***

"Overall, the mutation rate of each species showed an inverse correlation to its lifespan, meaning that as an animal's lifespan increased the rate of new mutations per year decreased. That ultimately meant that "the total number of mutations at the end of an animal's life was roughly similar across species," Naxerova and Gorelick noted.

***

"'Our reasoning was that cells from long-lived species may cope much better with a mutagen than cells from short-lived species," said Jan Vijg, a professor and chair of the Department of Genetics at the Albert Einstein College of Medicine.

"And that's just what they found. "Cells from a short-lived mouse quickly accumulated a lot of mutations, while in the very long-lived naked mole-rat or human, the same dose of mutagen did not even induce any mutations," said Vijg, who was not involved in the new Nature study. This suggests that long-lived animals may be better at repairing DNA damage and preventing mutations than short-lived animals, and this may partially explain why they accumulate mutations at a slower rate."

Comment: Iv find this discovery fascinating. I don't know how God speciates. but I have assumed He has kept tight control of DNA coding to change species. In this case the mutation rates appear to relate to random minor mutations that do not cause changes. God does not control these but it might be posed that He set the mutation clocks as described to produce the results seen here.

Evolution: mutational clocks don't fit Darwin theory

by David Turell @, Wednesday, April 27, 2022, 19:58 (939 days ago) @ David Turell
edited by David Turell, Wednesday, April 27, 2022, 20:09

Gunter Bechly returns:

https://evolutionnews.org/2022/04/species-pairs-a-new-challenge-to-darwinists/

"... the fossil record demonstrates that the history of life was not a series of gradual transformations by an accumulation of small changes over long periods of time. Instead, the fossil record consistently documents a series of saltational transitions with abrupt appearances of new body plans within very short windows of time. This implies a fatal problem for Darwinism called the waiting time problem, because population genetic calculations and simulations show that the windows of time established by the fossil record are orders of magnitude too short to accommodate the required genetic changes for these body plan transformations.

"Some examples of abrupt body plan transitions are the origin of photosynthesis; the origin of eukaryotes; the origin of the Ediacaran biota (Avalon Explosion) and Cambrian animal phyla (Cambrian Explosion) such as the origin of trilobites from worm-like ancestors in less than 13 million years; the origin of efficient eyes in arthropods, cephalopods, and vertebrates; the terrestrialization of plants (embryophytes), arthropods (tracheae), and vertebrates (tetrapod limbs); the origin of wings in insects, pterosaurs, bats, and birds (including the origin of pennaceous feathers from filamentous precursors); the origin of secondarily marine vertebrates such as ichthyosaurs, mosasaurs, manatees, and whales; the origin of echolocation in bats and whales; the origin of complex new reproductive systems (angiosperm flowers, dragonfly secondary copulatory apparatus, holometabolic insect metamorphosis, amniote egg, and eutherian placenta); the origin of distinct new body plans in vertebrates (e.g., snakes, turtles, bats, and whales); and even the origin of our own genus Homo and of a globular braincase correlated with the “Creative Explosion” of symbolic thinking within Homo sapiens.

***

"The fossil record shows that the transition from quadrupedal whale ancestors similar to Raoellidae and Pakicetidae to fully marine pelagicete whales like Basilosauridae happened in just 4.5 million years. This implies that the body plan transition from a pig-like animal to a dolphin-like animal happened within the lifespan of a single species. Of course, this does not exclude the possibility of several successive speciation events within this time period, but it is still a fact that illustrates the biological abruptness of this major anatomical re-engineering.

"Finally, there is also another related problem that has been hitherto largely overlooked: The morphological similarity of modern species pairs, which have diverged in a similar time frame, poses a severe problem. That is because it implies that the macroevolutionary processes that allegedly were at work and common during all periods of Earth history and in all groups of organisms, apparently were totally absent in the origins of all of the millions of living species.

David: after many species comparisons Bechly notes: "Finally, what about great apes and humans. Chimp (Pan paniscus) and gorilla (Gorilla gorilla) diverged according to TimeTree 9.06 million years ago and humans (Homo sapiens) from chimps 6.7 million years, which agrees with the hominin fossil record. There are two possibilities: Either you follow those scientists who consider the biological difference between humans and chimps as marginal. Then this example would just confirm the pattern described above. Or, you consider humans as very different from chimps, based on their different bipedal locomotion and especially their mental capacity and cultural achievements. In the latter case humans would represent the only exception to the pattern that I could find, which would be a remarkable confirmation of Judeo-Christian human exceptionalism." (my bold)

***

"Considering the fact that windows of time of only 5-10 million years account for most of the abrupt appearances of new body plans in the fossil record, the Bayesian likelihood of not finding a single example of similar morphological disparity having originated on a similar time frame among the millions of living species is basically close to zero. I consider this simple argument as a final nail in the coffin of Darwinian unguided evolution.

***

"There is no evolutionary reason why the creative power of this process should have been active over all of Earth history but then ceased to function within the past 10 million years. Intelligent design proponents can easily explain this pattern: there was creative intelligent intervention in the history of life, but this creative activity deliberately ceased with the arrival of humans as the final telos. Any further explanation would have to transgress the methodological limits of the design inference, but Judeo-Christian theists will certainly recognize an eerie correspondence with the Biblical message, which says that God rested from his creative activity after the creation of humans (Genesis 2:2-3)".

Comment: An extremely long article, condensed severely. But it answers dhw worries about the Cambrian gap indicating God can directly create when He wishes. That is exactly what God does, hop, skip, and jump through His form of evolution. Nothing like Darwin. Bechly is a highly trained paleontologist/ geneticist who contrary to the rule accepts God's actions. My views of God simply echo folks like Bechly.

Evolution: mutational clocks don't fit Darwin theory

by dhw, Thursday, April 28, 2022, 12:24 (938 days ago) @ David Turell

DAVID: Gunter Bechly returns:
https://evolutionnews.org/2022/04/species-pairs-a-new-challenge-to-darwinists/

QUOTE"... the fossil record demonstrates that the history of life was not a series of gradual transformations by an accumulation of small changes over long periods of time. Instead, the fossil record consistently documents a series of saltational transitions with abrupt appearances of new body plans within very short windows of time. […]" Some examples of abrupt body plan transitions are the origin of photosynthesis; the origin of eukaryotes; the origin of the Ediacaran biota (Avalon Explosion) and Cambrian animal phyla (Cambrian Explosion) such as the origin of trilobites from worm-like ancestors in less than 13 million years […]

I’m sorry, but I find this downplaying of time totally absurd. 13 million years may be peanuts in relation to the 3.8 thousand million years of life, but it is one helluva long time, and it contains too many generations of life forms for me to calculate. Nobody knows how long it takes one species to turn into another, and although I agree totally with those who find it difficult to believe that random mutations could result in all the complexities that have evolved between bacteria and humans, I cannot understand why the theory of cellular intelligence (possibly God’s invention), which could make rapid changes in response to changing conditions, has not even occurred to them. Nor can I understand the belief that there ought to be a step-by-step collection of fossils to cover each stage of every species that ever lived for the last 3.X thousand million years. You yourself believe in a mixture of common descent and direct speciation without precursors. Have you now decided that although you believe - despite the absence of fossils - in a continuous line from bacteria to humans (your God’s purpose from the very start of life), there is no continuous line from bacteria to humans (because of the absence of fossils)?

DAVID: after many species comparisons Bechly notes: "Finally, what about great apes and humans. Chimp (Pan paniscus) and gorilla (Gorilla gorilla) diverged according to TimeTree 9.06 million years ago and humans (Homo sapiens) from chimps 6.7 million years, which agrees with the hominin fossil record. There are two possibilities: Either you follow those scientists who consider the biological difference between humans and chimps as marginal. Then this example would just confirm the pattern described above. Or, you consider humans as very different from chimps, based on their different bipedal locomotion and especially their mental capacity and cultural achievements. In the latter case humans would represent the only exception to the pattern that I could find, which would be a remarkable confirmation of Judeo-Christian human exceptionalism." (David's bold)

I would not question the exceptional nature of our mental capacity. And I have no trouble at all believing that 6.7 million years is ample time for our anatomy to have diverged from that of chimps to its current form. No “exception” to the pattern of common descent, and that includes the evolution of the brain.
***
DAVID:: […] it answers dhw worries about the Cambrian gap indicating God can directly create when He wishes. That is exactly what God does, hop, skip, and jump through His form of evolution.

I don’t worry about it, but I’m surprised that you can’t see how it shows up the inconsistency of your own theories. If God “can directly create when He wishes”, and his only wish was to create sapiens plus food, why did he not create us directly? Your explanation is that you can’t explain it, and “God makes sense only to Himself.

Evolution: mutational clocks don't fit Darwin theory

by David Turell @, Thursday, April 28, 2022, 15:47 (938 days ago) @ dhw

DAVID: Gunter Bechly returns:
https://evolutionnews.org/2022/04/species-pairs-a-new-challenge-to-darwinists/

QUOTE"... the fossil record demonstrates that the history of life was not a series of gradual transformations by an accumulation of small changes over long periods of time. Instead, the fossil record consistently documents a series of saltational transitions with abrupt appearances of new body plans within very short windows of time. […]" Some examples of abrupt body plan transitions are the origin of photosynthesis; the origin of eukaryotes; the origin of the Ediacaran biota (Avalon Explosion) and Cambrian animal phyla (Cambrian Explosion) such as the origin of trilobites from worm-like ancestors in less than 13 million years […]

dhw: I’m sorry, but I find this downplaying of time totally absurd. 13 million years may be peanuts in relation to the 3.8 thousand million years of life, but it is one helluva long time, and it contains too many generations of life forms for me to calculate. Nobody knows how long it takes one species to turn into another, and although I agree totally with those who find it difficult to believe that random mutations could result in all the complexities that have evolved between bacteria and humans, I cannot understand why the theory of cellular intelligence (possibly God’s invention), which could make rapid changes in response to changing conditions, has not even occurred to them. Nor can I understand the belief that there ought to be a step-by-step collection of fossils to cover each stage of every species that ever lived for the last 3.X thousand million years. You yourself believe in a mixture of common descent and direct speciation without precursors. Have you now decided that although you believe - despite the absence of fossils - in a continuous line from bacteria to humans (your God’s purpose from the very start of life), there is no continuous line from bacteria to humans (because of the absence of fossils)?

The fossil gaps are real in the sense that phenotypic gaps are real. Bechly has previously been presented here explaining that in these 'gaps' are not fossil gaps, in that over time most fossils at those gaps have been found. In the current God/designer theory, God jumps ahead when He wishes to do so. No itty-bitty steps exist; all speciation creates a gap.


DAVID: after many species comparisons Bechly notes: "Finally, what about great apes and humans. Chimp (Pan paniscus) and gorilla (Gorilla gorilla) diverged according to TimeTree 9.06 million years ago and humans (Homo sapiens) from chimps 6.7 million years, which agrees with the hominin fossil record. There are two possibilities: Either you follow those scientists who consider the biological difference between humans and chimps as marginal. Then this example would just confirm the pattern described above. Or, you consider humans as very different from chimps, based on their different bipedal locomotion and especially their mental capacity and cultural achievements. In the latter case humans would represent the only exception to the pattern that I could find, which would be a remarkable confirmation of Judeo-Christian human exceptionalism." (David's bold)

dhw: I would not question the exceptional nature of our mental capacity. And I have no trouble at all believing that 6.7 million years is ample time for our anatomy to have diverged from that of chimps to its current form. No “exception” to the pattern of common descent, and that includes the evolution of the brain.

***

DAVID:: […] it answers dhw worries about the Cambrian gap indicating God can directly create when He wishes. That is exactly what God does, hop, skip, and jump through His form of evolution.

dhw: I don’t worry about it, but I’m surprised that you can’t see how it shows up the inconsistency of your own theories. If God “can directly create when He wishes”, and his only wish was to create sapiens plus food, why did he not create us directly? Your explanation is that you can’t explain it, and “God makes sense only to Himself.

What is inconsistent is your wish for understanding God clarity. I can see what history shows us God did. I simply accept it. I have no need to explain it as my quotes indicate. That is why I tell you it is wholly your problem you invent for yourself to wallow in.

Evolution: mutational clocks don't fit Darwin theory

by dhw, Friday, April 29, 2022, 11:35 (937 days ago) @ David Turell

I shan’t bother to repeat my objections to Bechly’s arguments, as you have ignored them.

dhw: You yourself believe in a mixture of common descent and direct speciation without precursors. Have you now decided that although you believe - despite the absence of fossils - in a continuous line from bacteria to humans (your God’s purpose from the very start of life), there is no continuous line from bacteria to humans (because of the absence of fossils)?

DAVID: The fossil gaps are real in the sense that phenotypic gaps are real. Bechly has previously been presented here explaining that in these 'gaps' are not fossil gaps, in that over time most fossils at those gaps have been found. In the current God/designer theory, God jumps ahead when He wishes to do so. No itty-bitty steps exist; all speciation creates a gap.

I don’t know how Bechly knows that most fossils have been found, but again I don’t know why anyone would expect a complete record covering the last 3.X billion years. However, I asked you what you believe, since you have always maintained that there is a continuous line from bacteria to humans, but this is contradicted by your belief that we are descended from Cambrian species without precursors. Your previous explanation was that all life forms are biochemical, but that doesn’t explain why, if your God’s one and only purpose was to design us and our food, he didn’t design our species and food directly. Even your version of the current theory is inconsistent. He jumps ahead when he wants to, but there are no itty bitty steps, which can only mean he always wanted to jump. Exit common descent.

DAVID:: […] it answers dhw worries about the Cambrian gap indicating God can directly create when He wishes. That is exactly what God does, hop, skip, and jump through His form of evolution.

dhw: I don’t worry about it, but I’m surprised that you can’t see how it shows up the inconsistency of your own theories. If God “can directly create when He wishes”, and his only wish was to create sapiens plus food, why did he not create us directly? Your explanation is that you can’t explain it, and “God makes sense only to Himself.”

DAVID: What is inconsistent is your wish for understanding God clarity. I can see what history shows us God did. I simply accept it. I have no need to explain it as my quotes indicate. That is why I tell you it is wholly your problem you invent for yourself to wallow in.

For the umpteenth time: history shows us a vast variety of organisms and econiches that have come and gone, with humans and current econiches as the latest. If, for argument’s sake, we accept the existence of God, history does NOT show us that God created all species and econiches individually, and it does NOT show us that every previous species and econiche was specially designed in preparation for and as part of “the goal of evolving (= designing) humans” plus our food. You do not “accept” this theory – you have invented it, and you can’t find any logic behind it, any more than you can find any logic behind the Cambrian problem outlined above.

Your unwillingness to discuss the problem of your God’s motives, methods and nature is in itself surprising, since you have devoted years of your life to thinking and also writing (brilliantly) about the problem of his existence. It seems that your interest in God ends where for some of us it would begin. Even as an agnostic, I am – just like many scientists, philosophers and theologians – eager to discuss how we got here and, if God exists, why he would have created life and what sort of being he might be. This website exists to discuss all facets of the subject, and if your only defence of your theories is that I and others should accept your inability to explain them as an explanation, I fear you are unlikely to make many converts!

Evolution: mutational clocks don't fit Darwin theory

by David Turell @, Friday, April 29, 2022, 16:20 (937 days ago) @ dhw

DAVID: The fossil gaps are real in the sense that phenotypic gaps are real. Bechly has previously been presented here explaining that in these 'gaps' are not fossil gaps, in that over time most fossils at those gaps have been found. In the current God/designer theory, God jumps ahead when He wishes to do so. No itty-bitty steps exist; all speciation creates a gap.

dhw: I don’t know how Bechly knows that most fossils have been found, but again I don’t know why anyone would expect a complete record covering the last 3.X billion years.

You salivate over experts like Shapiro and live by their opinions. Bechly is just as much as expert and his previous entries here explain his thinking about the current state of the fossil record. Simply, over time the finding of helpful new fossils dwindles to a trickle. That is where we are now. As a result the gaps remain. Try and ditch your underlying biases and learn current science! I try to show you; should I stop?

dhw: However, I asked you what you believe, since you have always maintained that there is a continuous line from bacteria to humans, but this is contradicted by your belief that we are descended from Cambrian species without precursors....Even your version of the current theory is inconsistent. He jumps ahead when he wants to, but there are no itty bitty steps, which can only mean he always wanted to jump. Exit common descent.

I accept God does as He wishes, so He jumps ahead as desired. Your definition of common descent is Darwinian. Mine is not. I see a path from bacteria to humans with many gaps as shown by Bechly. But each more complex stage is a form of evolution, but not the way you think about it because you are stuck with Darwin-think.


DAVID: What is inconsistent is your wish for understanding God clarity. I can see what history shows us God did. I simply accept it. I have no need to explain it as my quotes indicate. That is why I tell you it is wholly your problem you invent for yourself to wallow in.

dhw: For the umpteenth time: history shows us a vast variety of organisms and econiches that have come and gone, with humans and current econiches as the latest. If, for argument’s sake, we accept the existence of God, history does NOT show us that God created all species and econiches individually,

But I accept that God did create that history!!! How would you have Him do it?


dhw: Your unwillingness to discuss the problem of your God’s motives, methods and nature is in itself surprising, since you have devoted years of your life to thinking and also writing (brilliantly) about the problem of his existence. It seems that your interest in God ends where for some of us it would begin. Even as an agnostic, I am – just like many scientists, philosophers and theologians – eager to discuss how we got here and, if God exists, why he would have created life and what sort of being he might be. This website exists to discuss all facets of the subject, and if your only defence of your theories is that I and others should accept your inability to explain them as an explanation, I fear you are unlikely to make many converts!

I am unable to tell you how God reasons. That should be obvious. I look at reality and the results from God's creations and reach conclusions you can't seem to understand or accept. I see God's purposes, as a start in my thought, and do not overlay it with emotional needs as you do. In a sense our view of God is so different we always talk past each other. My experience with you is that I present many points from ID that I feel are perfectly reasonable, like Bechly's views and opinions, and you immediately attack, because your underlying biases are jostled. I've been wide open to new thoughts and theories since I decided to study Darwin's form of evolutionary theory 40-plus years ago. Most of the time in presenting new material here it feels like it bounces off a stone wall.

Evolution: mutational clocks don't fit Darwin theory

by dhw, Saturday, April 30, 2022, 08:45 (937 days ago) @ David Turell

This thread now overlaps with “Return to David’s theory”, but I feel obliged to answer all David’s criticisms.

DAVID: You salivate over experts like Shapiro and live by their opinions. Bechly is just as much as expert and his previous entries here explain his thinking about the current state of the fossil record. Simply, over time the finding of helpful new fossils dwindles to a trickle. That is where we are now. As a result the gaps remain. Try and ditch your underlying biases and learn current science! I try to show you; should I stop?

I have not disputed any of the current science – including the gaps! But current science has not discovered how speciation works, or proved that God exists, that his only purpose was to design humans plus food, or that he designed each species individually. I am always grateful for the current science you show me, but I have every right to question your inexplicable conclusions. I don’t “live by” Shapiro but find his theory more convincing than Darwin’s random mutations and your own theory that your God specially designed every species and food as preparation for humans plus food although most of them did not lead to humans plus food.

DAVID: I accept God does as He wishes, so He jumps ahead as desired. Your definition of common descent is Darwinian. Mine is not. I see a path from bacteria to humans with many gaps as shown by Bechly. But each more complex stage is a form of evolution, but not the way you think about it because you are stuck with Darwin-think.

My definition of common descent is Darwinian, as meaning that all life forms except the first evolved from preceding life forms, and of course each more complex stage is a form of evolution! I agree that the gaps are a problem, but I think Shapiro’s theory provides a possible explanation, as well as the fact that we cannot expect a complete fossil record over such a huge expanse of time. His theory – just like Darwin’s – allows for the existence of God. I do believe there’s a path from bacteria to humans and to every other life form, but I see no logic in your argument that there is such a path if you insist that humans are descended from species that were specially designed without any precursors.

dhw: […] history does NOT show us that God created all species and econiches individually.

DAVID: But I accept that God did create that history!!! How would you have Him do it?

Many scientists still accept Darwin’s theory of random mutations, but I don’t. I’m surprised you’ve forgotten my various theistic alternatives: 1) perhaps God-given cellular intelligence, leading to a free-for-all with possible dabbles; 2) your own separate creation, anthropocentric theory, with experimentation to explain the bush of life forms and foods unconnected with humans; 3) getting new ideas as he went along, with humans as the latest. I do not cling as you do to one inexplicable theory which you regard as fact.

dhw: […] This website exists to discuss all facets of the subject, and if your only defence of your theories is that I and others should accept your inability to explain them as an explanation, I fear you are unlikely to make many converts!

DAVID: I am unable to tell you how God reasons.

So are we all. But you are also unable to tell us how YOU reason. Hence your remarkable wish that I should take your inability to explain your theory as an explanation of your theory.

DAVID: I look at reality and the results from God's creations and reach conclusions you can't seem to understand or accept.

I understand your conclusions but cannot accept them because in combination (see earlier bold) even you can’t make sense of them.

DAVID: I see God's purposes, as a start in my thought, and do not overlay it with emotional needs as you do.

My theories do not make God “needy”. The only emotional needs proposed in our discussions have been your suggestion that he wants us to admire his work, and he wants to have a relationship with us.

DAVID: In a sense our view of God is so different we always talk past each other. My experience with you is that I present many points from ID that I feel are perfectly reasonable like Bechly's views and opinions, and you immediately attack, because your underlying biases are jostled.

I have total respect for the ID view that life’s complexities (and in Adler’s case, human uniqueness) denote intelligent design, and it’s one of the main reasons why I remain open-minded (undecided) about God’s existence. My attacks are exclusively on your own personal theories about evolution, which apparently only make sense to God.

DAVID: I've been wide open to new thoughts and theories since I decided to study Darwin's form of evolutionary theory 40-plus years ago. Most of the time in presenting new material here it feels like it bounces off a stone wall.

The material is hugely appreciated, but sometimes your conclusions are so illogical that I dispute them. But when I point out the logical flaws which you can’t explain, it “feels like it bounces off a stone wall” because “your underlying prejudices are jostled”.

Evolution: mutational clocks don't fit Darwin theory

by David Turell @, Saturday, April 30, 2022, 14:59 (936 days ago) @ dhw

DAVID: I accept God does as He wishes, so He jumps ahead as desired. Your definition of common descent is Darwinian. Mine is not. I see a path from bacteria to humans with many gaps as shown by Bechly. But each more complex stage is a form of evolution, but not the way you think about it because you are stuck with Darwin-think.

dhw: My definition of common descent is Darwinian, as meaning that all life forms except the first evolved from preceding life forms, and of course each more complex stage is a form of evolution! I agree that the gaps are a problem, but I think Shapiro’s theory provides a possible explanation, as well as the fact that we cannot expect a complete fossil record over such a huge expanse of time. His theory – just like Darwin’s – allows for the existence of God. I do believe there’s a path from bacteria to humans and to every other life form, but I see no logic in your argument that there is such a path if you insist that humans are descended from species that were specially designed without any precursors.

What precursor does the very earliest radio have? We humans can produce something entirely new. Note the gap in horse drawn carriage and first autos. The underlying common thread in evolution is living biochemistry, not phenotypes. But phenotypical pattrrns are obvious.


dhw: […] history does NOT show us that God created all species and econiches individually.

DAVID: But I accept that God did create that history!!! How would you have Him do it?

dhw: Many scientists still accept Darwin’s theory of random mutations, but I don’t. I’m surprised you’ve forgotten my various theistic alternatives: 1) perhaps God-given cellular intelligence, leading to a free-for-all with possible dabbles; 2) your own separate creation, anthropocentric theory, with experimentation to explain the bush of life forms and foods unconnected with humans; 3) getting new ideas as he went along, with humans as the latest. I do not cling as you do to one inexplicable theory which you regard as fact.

I reach conclusions and you remain in doubt, as we are different personalities. ;-)


dhw: […] This website exists to discuss all facets of the subject, and if your only defence of your theories is that I and others should accept your inability to explain them as an explanation, I fear you are unlikely to make many converts!

DAVID: I am unable to tell you how God reasons.

dhw: So are we all. But you are also unable to tell us how YOU reason. Hence your remarkable wish that I should take your inability to explain your theory as an explanation of your theory.

I don't follow that view of yours. I have presented all of my reasoning in books and here.

DAVID: In a sense our view of God is so different we always talk past each other. My experience with you is that I present many points from ID that I feel are perfectly reasonable like Bechly's views and opinions, and you immediately attack, because your underlying biases are jostled.

dhw: I have total respect for the ID view that life’s complexities (and in Adler’s case, human uniqueness) denote intelligent design, and it’s one of the main reasons why I remain open-minded (undecided) about God’s existence. My attacks are exclusively on your own personal theories about evolution, which apparently only make sense to God.

And to me.


DAVID: I've been wide open to new thoughts and theories since I decided to study Darwin's form of evolutionary theory 40-plus years ago. Most of the time in presenting new material here it feels like it bounces off a stone wall.

dhw: The material is hugely appreciated, but sometimes your conclusions are so illogical that I dispute them. But when I point out the logical flaws which you can’t explain, it “feels like it bounces off a stone wall” because “your underlying prejudices are jostled”.

I am constantly fighting your rigid Darwin-think bias. My evolutionary theory differs widely from yours as see the gaps as intelligent design.

Evolution: mutational clocks don't fit Darwin theory

by dhw, Sunday, May 01, 2022, 08:20 (936 days ago) @ David Turell

Dhw: […] I do believe there’s a path from bacteria to humans and to every other life form, but I see no logic in your argument that there is such a path if you insist that humans are descended from species that were specially designed without any precursors.

DAVID: What precursor does the very earliest radio have? We humans can produce something entirely new. Note the gap in horse drawn carriage and first autos. The underlying common thread in evolution is living biochemistry, not phenotypes. But phenotypical pattrrns are obvious.

Yes, all life is biochemical. That does not mean that all past lives and foods were preparation for humans and our food! I love it when you draw parallels between your God’s activities and ours, while dismissing as “humanizing” any of my theories that draw parallels between God’s activities and ours. And as usual you have completely missed the point. Of course your God could produce something entirely new if he wanted to. And that is the dilemma which leaves you floundering, because if his only purpose was to produce us – as is your fixed belief – why the heck didn’t he just go ahead and do it? Your classic answer is: “What I cannot explain is why God chose evolution over direct creation. Why can’t you accept that explanation?

DAVID: I am unable to tell you how God reasons.

dhw: So are we all. But you are also unable to tell us how YOU reason. Hence your remarkable wish that I should take your inability to explain your theory as an explanation of your theory.

DAVID: I don't follow that view of yours. I have presented all of my reasoning in books and here.

You have presented good reasons for believing in the existence of God. You cannot find any reason at all behind the theory I keep attacking – hence the non-explanation above and the statement that “God makes sense only to Himself.”

DAVID: […]. My experience with you is that I present many points from ID that I feel are perfectly reasonable like Bechly's views and opinions, and you immediately attack, because your underlying biases are jostled.

dhw: I have total respect for the ID view that life’s complexities (and in Adler’s case, human uniqueness) denote intelligent design, and it’s one of the main reasons why I remain open-minded (undecided) about God’s existence. My attacks are exclusively on your own personal theories about evolution, which apparently only make sense to God.

DAVID: And to me.

But when I attack your illogical theories, you can’t explain them, and “God makes sense only to Himself.” Unless…oh good heavens…unless you are God in disguise...:-P

Evolution: intelligent agent can produce gaps by design

by David Turell @, Sunday, May 01, 2022, 16:05 (935 days ago) @ dhw
edited by David Turell, Sunday, May 01, 2022, 16:12

ID explains:

https://evolutionnews.org/2022/04/the-positive-case-for-intelligent-design-in-paleontol...

"Intelligent design provides a sufficient causal explanation for the origin of large amounts of information, since we have considerable experience of intelligent agents generating informational configurations of matter…We know from experience that intelligent agents often conceive of plans prior to the material instantiation of the systems that conform to the plans — that is, the intelligent design of a blueprint often precedes the assembly of parts in accord with a blueprint or preconceived design plan.

“'Intelligent agents sometimes produce material entities through a series of gradual modifications (as when a sculptor shapes a sculpture over time). Nevertheless, intelligent agents also have the capacity to introduce complex technological systems into the world fully formed. Often such systems bear no resemblance to earlier technological systems — their invention occurs without a material connection to earlier, more rudimentary technologies. When the radio was first invented, it was unlike anything that had come before, even other forms of communication technology. For this reason, although intelligent agents need not generate novel structures abruptly, they can do so.

"Hypothesis (prediction): Novel biological forms requiring large amounts of new genetic information will appear abruptly in the fossil record, “fully formed,” and without similar precursors.

"Experiment (data): Biological novelty commonly appears in the fossil record suddenly, fully formed and without similar precursors or evolutionary intermediates.3 As one zoology textbook states:

"Many species remain virtually unchanged for millions of years, then suddenly disappear to be replaced by a quite different, but related, form. Moreover, most major groups of animals appear abruptly in the fossil record, fully formed, and with no fossils yet discovered that form a transition from their parent group.

"The dominant pattern in the fossil record is explosions of new biological forms. The Cambrian explosion is a prime example where most of the major animal phyla appear “fully formed” in a geologically abrupt manner, but there are many other examples in the fossil record, including a bird explosion, an angiosperm explosion, and a mammal explosion. Even our genus Homo appears abruptly."

Comment: A few days ago, I mentioned the design gap with the appearance of the radio following the telegraph. dhw commented his usual illogical thinking about a designer in action. The whole point is above. God, as an intelligent agent can make any gap He wishes. dhw's dismay about the Cambrian gap is logic down a rabbit hole. God's design of evolution is a God design, never related to Darwin's thinking. Therefore. obviously, can be different forms of the meaning of common descent. God can wish to evolve humans in His own way over time.

Evolution: mutational clocks don't fit Darwin theory

by David Turell @, Sunday, May 01, 2022, 16:09 (935 days ago) @ dhw

Dhw: […] I do believe there’s a path from bacteria to humans and to every other life form, but I see no logic in your argument that there is such a path if you insist that humans are descended from species that were specially designed without any precursors.

DAVID: What precursor does the very earliest radio have? We humans can produce something entirely new. Note the gap in horse drawn carriage and first autos. The underlying common thread in evolution is living biochemistry, not phenotypes. But phenotypical patterns are obvious.

dhw: Yes, all life is biochemical. That does not mean that all past lives and foods were preparation for humans and our food! I love it when you draw parallels between your God’s activities and ours, while dismissing as “humanizing” any of my theories that draw parallels between God’s activities and ours. And as usual you have completely missed the point. Of course your God could produce something entirely new if he wanted to. And that is the dilemma which leaves you floundering, because if his only purpose was to produce us – as is your fixed belief – why the heck didn’t he just go ahead and do it? Your classic answer is: “What I cannot explain is why God chose evolution over direct creation. Why can’t you accept that explanation?

DAVID: I am unable to tell you how God reasons.

dhw: So are we all. But you are also unable to tell us how YOU reason. Hence your remarkable wish that I should take your inability to explain your theory as an explanation of your theory.

DAVID: I don't follow that view of yours. I have presented all of my reasoning in books and here.

dhw: You have presented good reasons for believing in the existence of God. You cannot find any reason at all behind the theory I keep attacking – hence the non-explanation above and the statement that “God makes sense only to Himself.”

DAVID: […]. My experience with you is that I present many points from ID that I feel are perfectly reasonable like Bechly's views and opinions, and you immediately attack, because your underlying biases are jostled.

dhw: I have total respect for the ID view that life’s complexities (and in Adler’s case, human uniqueness) denote intelligent design, and it’s one of the main reasons why I remain open-minded (undecided) about God’s existence. My attacks are exclusively on your own personal theories about evolution, which apparently only make sense to God.

DAVID: And to me.

dhw:But when I attack your illogical theories, you can’t explain them, and “God makes sense only to Himself.” Unless…oh good heavens…unless you are God in disguise...:-P

The answer is in the ID entry today. I am on firm ground. dhw is not! ;-)

Evolution: anoxic eukaryotes present before oxygen

by David Turell @, Monday, May 02, 2022, 16:21 (934 days ago) @ David Turell

A reasonable new theory:

https://www.sciencedaily.com/releases/2022/04/220427100608.htm

"'We can now independently date eukaryogenesis and key oxygenation transitions in Earth history," said Dr Daniel Mills, of Stanford University.

"'Based on fossil and biological records, the timing of eukaryogenesis does not correlate with these oxygen transitions in the atmosphere (2.22 billion years ago) or the deep ocean (0.5 billion years ago).

"'Instead, mitochondria-bearing eukaryotes are consistently dated to between these two oxygenation events, during an interval of deep-sea anoxia and variable surface-water oxygenation."

"The emergence of mitochondria -- the energy-producing "powerhouses" of eukaryote cells -- is now thought to be the defining step in eukaryogenesis.

"Mitochondria have different DNA to the cells in which they live, and the new paper addresses the possible origin of this symbiotic relationship, famously championed by the biologist Lynn Margulis.

"'The 2015 discovery of 'Asgard' archaea (single-celled organisms) offers a major clue," Dr Mills said.

"'Mitochondria-bearing eukaryotes likely resulted from a merger between archaea and bacteria, and the DNA in modern Asgard archaea is more closely related to the DNA found in eukaryote nuclei today than it is to other archaea.

"'This is additional evidence that the host that took in the bacterium was an archaeon."

"Asgard archaea live in anoxic ocean sediments, and they can live symbiotically with bacteria -- possibly the same situation that led to the "metabolic coupling" that created the first eukaryote cells.

***

"'The idea that oxygen led to eukaryogenesis has been taken for granted," he said.

"'In fact, mitochondrial aerobic respiration probably emerged later, having only become globally widespread within the last billion years as atmospheric oxygen approached modern levels.'"

Comment: as the evidence comes together, this new theory is reasonable. And puts the first life back in teh deep ocean, not in 'warm ponds'.

Evolution: the first neurons

by David Turell @, Monday, August 08, 2022, 18:43 (836 days ago) @ David Turell

In comb jellies:

https://phys.org/news/2022-08-brain-jellies-scientists-explore-evolution.html

"Neurons, the specialized cells of the nervous system, are possibly the most complicated cell type ever to have evolved. In humans, these cells are capable of processing and transmitting vast sums of information. But how such complicated cells first came about remains a long-standing debate.

"Now, scientists in Japan have revealed the type of messenger—molecules that carry signals from one cell to another—that likely functioned in the most ancestral nervous system.

***

"In his study, Prof. Watanabe focused on an ancient and diverse group of neural messengers. Called neuropeptides, these short peptide chains are first synthesized in neurons as a long peptide chain, before being cleaved by digestive enzymes into many short peptides. They are the major form of messenger found in cnidarians, and also play a role in neural communication in humans, and other complex animals.

"However, past research that has attempted to find similar neuropeptides in comb jellies has been unsuccessful. The main problem, explained Prof. Watanabe, is that the mature short peptides are encoded by only short sequences of DNA, and mutate frequently in these ancient lineages, making DNA comparisons too difficult. While artificial intelligence has identified potential peptides, these have not yet been experimentally validated.

"So, Prof. Watanabe's research team approached the problem from a new direction. They extracted peptides from sponges, cnidarians and comb jellies and used mass spectrometry to search for short peptides. The team was able to find 28 short peptides in cnidarians and comb jellies and determine their amino acid sequences.

"Now knowing their structures, the researchers visualized the short peptides under a fluorescent microscope, allowing them to see which cells they were produced in in both cnidarians and comb jellies.

"In comb jellies, they found that one type of neuropeptide-expressing cell looked similar to classic neurons, with thin projections called neurites extending out from the cell.

"But the short peptides were also produced in a second type of cell that lacked neurites. The researchers suspect these could be an early version of neuroendocrine cells—cells which receive signals from neurons and then release signals, like hormones, to other organs in the body.

"The researchers also compared what genes were expressed in cnidarian and comb jelly neurons. They found that as well as having some short neuropeptides in common, both neurons also expressed a similar array of other proteins essential for neuronal function.

"'We already know that cnidarian peptide-expressing neurons are homologous to those seen in more complex animals. Now, comb jelly neurons have also been found to have a similar "genetic signature," suggesting that these neurons share the same evolutionary origin," said Prof. Watanabe. "In other words, it's most likely that neurons only evolved once."

"This means, added Prof. Watanabe, that peptide-expressing neurons are probably the most ancestral form, with chemical neurotransmitters arising later. For Prof. Watanabe, these findings bring new, exciting questions to the forefront of his research.

"'If this is true, I'm most interested to know—where did the peptide-expressing neurons come from? And why did the ancestral animal need to evolve neurons? Now that we have a clearer idea of what the earliest neurons looked like, research into their original function can begin.'"

Comment: every cell type in humans came from some past development. This search seems to find an origin of neurons, and the final questions from Dr. Watanabe are typical from a Darwinian type of thinking. My approach is that God, as the original designer of everything, produced exactly all the forms He wanted at each stage of evolution. Since I accept, a God is charge, there is no reason to second guess His choices of what He produced and when He produced them. Since humans finally appeared under God's control, that must have been His intention from the very beginning.

Evolution: review of eukaryote origin

by David Turell @, Thursday, October 27, 2022, 19:03 (756 days ago) @ David Turell

Using genetic studies of comparative genes:

https://www.the-scientist.com/features/the-long-and-winding-road-to-eukaryotic-cells-70556

"Most of the details of these evolutionary leaps, however, remain unsettled. Researchers do not uniformly agree on which branch of life eukaryotes sprang from, which microbial players might have contributed to the process, or on the order of specific evolutionary milestones along the way. But the recent identification of the Asgard archaea, thought to be the closest living relatives to modern eukaryotes, has enlivened discussions about eukaryogenesis.

***

"Already, the discovery of the Asgards has solidified certain aspects of eukaryogenesis while raising new questions about others. “I think this is the most exciting development in biology right now. So much is being discovered and so many predictions are being met,” says Daniel Mills, a geobiologist and postdoctoral researcher at Ludwig-Maximilians-Universität München who recently coauthored a paper suggesting that eukaryotes likely evolved in the absence of oxygen. Eukaryogenesis, he adds, is “arguably one of the most important events in the history of life, after the origin of life itself.”

***

"Spang had studied a group of archaea called the Thaumarchaeota (now Nitrososphaerota), and during that work, she’d picked up hints that the genomes of these and other archaea contained code for genes that produce what are known as eukaryotic signature proteins, or ESPs. These proteins should not have had recognizable counterparts in archaea, and yet, there they were.

***

"In addition, they found that Ca. P. syntrophicum lives in close association with another archaeon called Methanogenium. Ca. P. syntrophicum gets its energy by digesting amino acids and peptides for their nitrogen, and in turn, Methanogenium uses the hydrogen produced during that process to create its own fuel and at the same time reduce environmental hydrogen, which can induce cellular stress. This partnership confirms that Asgards engage in the type of relationships that researchers suspect gave rise to eukaryotes.

***

"Researchers who spoke to The Scientist say that many scientists have rallied behind the idea that the first eukaryotes evolved out of a syntrophy between an archaeal host and bacteria that somehow found their way inside to become the organelles, such as nuclei and mitochondria, that distinguish eukaryotes. The details of these relationships remain murky, but mitochondria provide the most tantalizing clues to their origin story. “There’s DNA in mitochondria that we can somewhat clearly connect or trace back to alphaproteobacteria,” says Laura Eme, an evolutionary microbiologist at France’s National Centre for Scientific Research (CNRS). “Even if we don’t know exactly which lineage, we have a smoking gun.”

***

"In the 1990s, López-García proposed the Syntrophy hypothesis for the origin of eukaryotes, which posited a three-party metabolic symbiosis between two bacteria and an archaeon. She maintains that this hypothesis is the only one that explains not only the origins of the nucleus, but also the so-called lipid divide, another unsettled aspect of eukaryogenesis in which the lipids that make up the cell membranes of eukaryotes are more similar to those in bacteria than to those in archaea.

***

"A couple of years ago, López-García and her Paris-Saclay colleague David Moreira, also affiliated with the CNRS, updated the hypothesis to reflect the discovery of Asgards, but rather than place an archaeon as the original host, they propose than an archaeon—specifically a hydrogen-producing, Asgard-like archaeon—was the original nucleus. The host, they suggest, was likely a deltaproteobacterium, and the ancestor of mitochondria an alphaproteobacterium. This idea is supported, they say, by the fact that most genes in modern eukaryotes are actually bacterial, and not archaeal, in origin, and that eukaryotic membranes are made up of phospholipids that more closely resemble bacterial ones.

***

"Leger agrees that our understanding of eukaryogenesis is likely to advance with baby steps. “Part of the nature of these deep evolutionary questions is that we will never know, we will never have a clear proof of some of the hypotheses that we’re trying to develop,” she says. “But we can keep refining our ideas.”

***

"Valerie De Anda, a microbiologist at the University of Texas at Austin Marine Science Institute who studies early prokaryotic metabolism, isn’t dissuaded by the current lack of evidence from the idea that a virus may well be the source of the eukaryotic nucleus. She and her colleagues are currently looking for mRNA-capping genes involved in transcription and translation that were suggested by Bell to have been derived from a long-ago “first eukaryotic nuclear ancestor.”

Comment: no conclusions but slow progress. I've boiled down a giant article.

Evolution: elephant trunk and nerve controls:

by David Turell @, Monday, October 31, 2022, 22:42 (752 days ago) @ David Turell

A study of African and Asian elephant nerve controls of trunks:

https://www.smithsonianmag.com/smart-news/what-an-elephants-brain-reveals-about-its-tru...

“'As you might have expected because of their size and because of elephants’ very special facial abilities, there are six times more neurons that innervate the musculature of the elephant face compared to humans,” co-author Michael Brecht, a researcher at Humboldt University of Berlin, tells the Wall Street Journal’s Dominique Mosbergen.

"The team examined four Asian elephant (Elephas maximus) brains and four African savanna elephant (Loxodonta africana) brains, and they found that about half of elephants’ facial neurons are dedicated to the trunk. And the brain cells that controlled the tip of the trunk’s movement are larger than those associated with the parts of the trunk that are closer to the face.

"But between the two elephant species, the researchers found some major neural differences. For one, they used their trunks differently, a contrast reflected in their brains. An Asian elephant has one “finger” at the trunk’s tip, so it will pick up an object by wrapping the entire trunk around it. African savanna elephants, on the other hand, have two of these fingers, which they use to hold items.

“'This kind of pincer grip requires much dexterity with the trunk tip,” co-author Thomas Hildebrandt from the Leibniz Institute for Zoo and Wildlife Research says in the statement. “Not surprisingly, we see in the brains of African elephants prominent neuron clusters for the control of the fingertips.”

"The ears, too, differed between the species. African elephants have roughly 63,000 facial neurons, of which about 12,000 are used to control their ears. The Asian species, meanwhile, has some 54,000 facial neurons, with about 7,500 of them used for ear movement. This may partially be because of the animals’ physical differences: Asian elephants have smaller, rounder ears than their African relatives.

“'It’s a beautiful example of how species’ diversity in brain structure maps to a body’s specialized anatomy,” Chet Sherwood, a biological anthropologist at George Washington University who was not involved with the study, tells the Wall Street Journal."

Comment: this is a no-surprise result, knowing what we know ab out elephant trunk dexterity.

Evolution: an aquatic dinosaur

by David Turell @, Saturday, December 03, 2022, 00:24 (720 days ago) @ David Turell
edited by David Turell, Saturday, December 03, 2022, 01:13

Land and water with early stage flippers:

https://www.livescience.com/diving-dinosaur-swimming-hunter-many-teeth?utm_term=C3CFD69...

"Noodle-necked swimming dinosaur may have been a diving predator like a penguin

"Scientists recently discovered the first non-avian theropod dinosaur with a streamlined body similar to that of penguins, auks and other modern diving birds

"A dinosaur with an undulating noodle neck and a streamlined body like those of modern diving birds may have plunged through the depths of a Cretaceous sea about 71 million to 72 million years ago, in what is now Mongolia. This predator belonged to a different lineage of theropods — bipedal and mostly meat-eating dinosaurs — than the one that produced modern birds, but its body shape and limbs hint that it swam and dove as a penguin does, scientists recently discovered.

"The skeleton was in exceptional condition with a near-complete skull. It was excavated from the Baruungoyot (also spelled Barun Goyot) Formation, a location in the southern part of Mongolia's Gobi Desert dating to the Cretaceous period (145 million to 66 million years ago). In life, it would have been about the size of a mallard duck, and researchers noted that its gooselike neck, flipperlike forelimbs and proportions of its digits resembled those of the Mongolian theropod genus Halszkaraptor, which is thought to be aquatic.

***

"The newfound fossil is more complete than any of the known Halszkaraptor fossils; the skeleton is "mostly articulated" with ribs that are oriented toward the tail, as they are in aquatic diving birds, according to a study published Dec. 1 in the journal Communications Biology(opens in new tab). This offered scientists the first evidence of a nonavian theropod with a body that was optimized for reducing drag in aquatic environments.

***

"N. polydontus probably wasn't able to soar through the air with its short, flattened forelimbs, though it may have used them to paddle through water. But one of the most compelling clues about its aquatic habits was its ribs — specifically, the direction in which they were pointing. In land-based theropods, the dorsal ribs extended from the spine in a mostly horizontal arc. But in N. polydontus, these ribs curved back toward its tail. Such backward-oriented ribs lower the height of the rib cage, and are a feature in diving birds, Lee told Live Science in an email. This suggests that N. polydontus had a streamlined body, "which would be advantageous because a streamlined body reduces drag in the water and allows efficient swimming," Lee said."

Comment: interesting in that it was only partially adapted to aquatic life. It may have evolved by trying to dive for food. But only if starving on land. More likely a God design. It walked on hind legs with forelimbs moderately flipperoid:

https://phys.org/news/2022-12-mongolian-fossil-species-non-avian-theropod.html

Evolution: a new twig is added

by David Turell @, Thursday, December 08, 2022, 02:48 (715 days ago) @ David Turell

Discovery of new sea organisms, all predatory:

https://phys.org/news/2022-12-tree-life-lions-microbial-world.html

"There's a new branch on the tree of life and it's made up of predators that nibble their prey to death.

"These microbial predators fall into two groups, one of which researchers have dubbed "nibblerids" because they, well, nibble chunks off their prey using tooth-like structures. The other group, nebulids, eat their prey whole. And both constitute a new ancient branch on the tree of life called Provora, according to a paper published today in Nature.

Like lions, cheetahs, and more familiar predators, these microbes are numerically rare but important to the ecosystem, says senior author Dr. Patrick Keeling, professor in the UBC department of botany. "Imagine if you were an alien and sampled the Serengeti: you would get a lot of plants and maybe a gazelle, but no lions. But lions do matter, even if they are rare. These are lions of the microbial world." (my bold)

***

"'In the taxonomy of living organisms, we often use the gene '18S rRNA' to describe genetic difference. For example, humans differ from guinea pigs in this gene by only six nucleotides. We were surprised to find that these predatory microbes differ by 170 to 180 nucleotides in the 18S rRNA gene from every other living thing on Earth. It became clear that we had discovered something completely new and amazing," Dr. Tikhonenkov said.

"On the tree of life, the animal kingdom would be a twig growing from one of the boughs called domains, the highest category of life. But sitting under domains, and above kingdoms, are branches of creatures that biologists have taken to calling supergroups. About five to seven have been found, with the most recent in 2018—until now.

***

"'Ignoring microbial ecosystems, like we often do, is like having a house that needs repair and just redecorating the kitchen, but ignoring the roof or the foundations," said Dr. Keeling. "This is an ancient branch of the tree of life that is roughly as diverse as the animal and fungi kingdoms combined, and no one knew it was there." (my bold)

***

'Culturing the microbial predators was no mean feat, since they require a mini-ecosystem with their food and their food's food just to survive in the lab. (my bold)

"A difficult process in itself, the cultures were initially grown in Canada and Russia, and both COVID and Russia's war with Ukraine prevented Russian scientists from visiting the lab in Canada in recent years, slowing down the collaboration."

Comment: a real surprise. There are ecosystems everywhere, all built the same way. All depending on dog-eat-dog. And dhw calls our own important ecosystem as a superficial entitry: "human plus food" and pretends that is all God is concerned with. Yes, He wanted to reach that goal but had lots of supporting items to do to achieve it.

Evolution: mammal diversity saved them

by David Turell @, Thursday, December 08, 2022, 19:40 (714 days ago) @ David Turell

Massive study of fossil history:

https://www.newscientist.com/article/2350316-diversity-helped-mammals-survive-asteroid-...

"Mammals survived the asteroid that wiped out the dinosaurs by evolutionarily hedging their bets, generating an array of varied species that set them up to weather the prehistoric apocalypse, according to a new analysis.

"By looking at how ecosystems in prehistoric North America changed – or stayed the same – Jorge García-Girón at the University of León, Spain, and his colleagues hoped to gain some insight into why mammals and other small creatures thrived after the impact while birds were all that remained of the dinosaurs.

“I do not believe that selectivity favouring small-bodied animals alone can explain the difference between survival and extinction between mammals and dinosaurs,” says García-Girón. The real picture is much more complex and has to do with the spread of different diets, behaviours and niches that animals had before the impact, he says.

"Drawing on more than 1600 fossils of various North American dinosaurs, fish, amphibians, reptiles, birds and mammals, the team created an estimation of the niches each extinct species occupied. For each species, the researchers assigned a body size, habitat and diet, plugging this information into a computational model developed by ecologists to track how food webs shift over time.

"The team found that dinosaurs present in North America 66 million years ago more or less resembled those of 18 million years earlier and represented a form of ecological stability. Mammals, meanwhile, persistently pushed the envelope of adaptation, evolving into a vast array of climbing, gliding, swimming, burrowing and other forms during this period.

"Contrary to some previous studies that proposed a decline in the number of dinosaur species approaching the impact, the researchers found no such dip. If anything, dinosaurs like T. rex and Triceratops were filling the same roles their ancestors did millions of years earlier. Mammals, on the other hand, were more flexible.

"The team found that dinosaurs present in North America 66 million years ago more or less resembled those of 18 million years earlier and represented a form of ecological stability. Mammals, meanwhile, persistently pushed the envelope of adaptation, evolving into a vast array of climbing, gliding, swimming, burrowing and other forms during this period.

***

“'It not only amazed me how mammals managed to thrive in the highly complex, and probably dangerous, dinosaur-dominated ecosystems,” says García-Girón, but how also how rapidly our ancestors moved into vacant niches after the asteroid hit.

“'Dinosaurs going extinct is certainly a captivating story, but they were just one of the many taxa that were dramatically affected by the… mass extinction,” says Lucas Weaver at the University of Michigan. The study brings together the data various researchers have collected into a new theoretical model that can continue to be assessed with new discoveries, says Weaver, and such ecosystem-wide approaches are likely to provide the next big insights into what happened before and after this cataclysmic event.

“'It not only amazed me how mammals managed to thrive in the highly complex, and probably dangerous, dinosaur-dominated ecosystems,” says García-Girón, but how also how rapidly our ancestors moved into vacant niches after the asteroid hit."

Comment: my view is God knows everything. He knew about the coming of Chixculub asteroid and pushed the advancing speciation of mammals.

Evolution: an aquatic dinosaur

by David Turell @, Monday, April 03, 2023, 23:00 (598 days ago) @ David Turell

A very old ichthyosaurus fossil found:

https://www.uu.se/en/news/article/?id=20444&typ=artikel&lang=en

"For nearly 190 years, scientists have searched for the origins of ancient sea-going reptiles from the Age of Dinosaurs. Now a team of Swedish and Norwegian palaeontologists has discovered remains of the earliest known ichthyosaur or ‘fish-lizard’ on the remote Arctic island of Spitsbergen.

"Ichthyosaurs were an extinct group of marine reptiles whose fossils have been recovered worldwide. They were amongst the first land living animals to adapt to life in the open sea, and evolved a ‘fish-like’ body shape similar to modern whales. Ichthyosaurs were at the top of the food chain in the oceans while dinosaurs roamed the land, and dominated marine habitats for over 160 million years

***

"Over time, these early amphibious reptiles became more efficient at swimming and eventually modified their limbs into flippers, developed a ‘fish-like’ body shape, and started giving birth to live young; thus, severing their final tie with the land by not needing to come ashore to lay eggs.The new fossils discovered on Spitsbergen are now revising this long accepted theory.

"Close to the hunting cabins on the southern shore of Ice Fjord in western Spitsbergen, Flower’s valley cuts through snow-capped mountains exposing rock layers that were once mud at the bottom of the sea around 250 million years ago. A fast-flowing river fed by snow melt has eroded away the mudstone to reveal rounded limestone boulders called concretions.

***

"Unexpectedly, these vertebrae occurred within rocks that were supposedly too old for ichthyosaurs. Also, rather than representing the textbook example of an amphibious ichthyosaur ancestor, the vertebrae are identical to those of geologically much younger larger-bodied ichthyosaurs, and even preserve internal bone microstructure showing adaptive hallmarks of fast growth, elevated metabolism and a fully oceanic lifestyle.

"Geochemical testing of the surrounding rock confirmed the age of the fossils at approximately two million years after the end-Permian mass extinction. Given the estimated timescale of oceanic reptile evolution, this pushes back the origin and early diversification of ichthyosaurs to before the beginning of the Age of Dinosaurs; thereby forcing a revision of the textbook interpretation and revealing that ichthyosaurs probably first radiated into marine environments prior to the extinction event.

”'Excitingly, the discovery of the oldest ichthyosaur rewrites the popular vision of Age of Dinosaurs as the emergence timeframe of major reptile lineages. It now seems that at least some groups predated this landmark interval, with fossils of their most ancient ancestors still awaiting discovery in even older rocks on Spitsbergen and elsewhere in the world,” says Benjamin Kear, researcher at Museum of Evolution, Uppsala University."

Comment: we should wonder who the predecessors were, so early in evolutionary history.

Evolution: a first animal, comb jelly or sponge?

by David Turell @, Wednesday, May 17, 2023, 19:09 (554 days ago) @ David Turell

A new answer?:

https://www.newscientist.com/article/2374162-comb-jellies-not-sponges-might-be-the-olde...

"Were sponges or comb jellies the first to split from the animal family tree? A new approach at settling this question, which is critical to understanding the evolution of animals, points strongly to comb jellies – but not all researchers are convinced.

"All animals alive today are thought to be descended from a common ancestor that lived more than 600 million years ago. Until fairly recently, researchers thought that sponges were the first group to split from this common ancestor and begin evolving separately. The next group to diverge from the animal family tree was then comb jellies.

***

"Now, Schultz and his colleagues have pursued a new line of evidence. Where previous studies compared small-scale changes in the DNA sequences of comb jellies, sponges and other animals, his team looked at larger-scale patterns in the order of genes on their chromosomes.

"The idea is that these patterns — known as synteny — are more stable over longer periods of evolutionary change, says Schultz. While individual genes can be reshuffled by evolution, the reordering of linked groups of genes caused by mixing and fusing chromosomes is both a rare and irreversible event.

"Schultz’s team compared shared patterns of synteny between two species of comb jellies, two species of sponges and two species from other animal groups. In order to determine patterns of synteny prior to any divergence, the researchers looked specifically at 31 groups of genes shared between comb jellies and at least one of three single-celled ancestors of all animals.

***

"In seven of these groups of genes, the comb jellies had patterns of synteny present in at least one single-celled ancestor, but that were missing in sponges and the other animal groups. This suggests that the comb jellies split from the other animals prior to the reordering events that gave the other animals distinct shared patterns of synteny, says Schultz. The possibility that the pattern occurred by random chance is extremely unlikely, he says.

“'I’d say this is the strongest evidence to date in favour of the jellies-first hypothesis,” says Aoife McLysaght at Trinity College Dublin in Ireland, whose own work has come down in favour of sponges. But she would like to see more work to understand how to reconcile the finding with the small-scale DNA sequence-based approaches that have found sponges split first.

***

"If the synteny results hold up, this would have wide-ranging implications for understanding the evolution of neurons, muscles and other organ systems in animals, says Kenneth Halanych at the University of North Carolina Wilmington. For instance, sponges don’t have neurons, but comb jellies do. If comb jellies split first, it could mean neurons independently evolved in comb jellies and other animals groups." (my bold)

Comment: my bold noting comb jellies have neurons is key to the answer. Neurons are must unusual cells and vital to future evolved animals. The first animal should have neurons.

Evolution: mid-Triassic flying reptile explosion

by David Turell @, Friday, May 19, 2023, 17:21 (552 days ago) @ David Turell

Much like an on land Cambrian explosion:

https://evolutionnews.org/2023/05/fossil-friday-the-explosive-origin-of-flying-reptiles...

"Within only two million years of the Mid-Triassic era (about 230-228 million years ago) there was a sudden appearance of a large diversity of gliding and flying reptiles, such as Sharovipteryx with wings on the legs, Mecistotrachelos and the unrelated Kuehneosauridae with a gliding membrane across lateral rib-like projections, Longisquama with long feather-like scales on the back, and the earliest pterosaurs such as Preondactylus with bat-like wings supported by a single enlarged finger.

"All these very different solutions for gliding and active flight required considerable re-engineering of the tetrapod body plan, and such biological novelty arguably required new and highly specific genetic code. Such specified information cannot be produced by blind mechanisms and certainly not in such a short window of time of only two million years, which corresponds to just about half the average longevity of a vertebrate species.

***

"Whatever the mechanism of design may have been, the abrupt origin of flying reptiles is just one example within a kind of carpet bombing of biological explosions during the Triassic era, when many new orders and families of metazoan animals suddenly appeared after the end-Permian mass extinction event. This has been called the Early Triassic Metazoan Radiation, and includes marine invertebrates (e.g., bivalves and ceratite cephalopods), insects (e.g., coleopterans and dipterans), 15 different families and body plans of marine reptiles, as well as the first representatives of modern terrestrial tetrapod taxa that appeared suddenly within a short window of time between 251-240 million years ago (Ezcurra 2010). The latter include the first dinosaurs (Nyasasaurus), the first lizard-relatives (Lepidosauromorpha such as Paliguana), the first croc-relatives (Crurotarsi such as Ctenodiscosaurus), the first mammal-like animals (Mammaliaformes such as Haramiyida), and allegedly the first turtles (Pappochelys) even though this is more dubious

"The well-known paleontologist Peter Ward, who is an ardent Darwinist and a strong opponent of intelligent design theory, explicitly acknowledged that “the diversity of Triassic animal plans is analogous to the diversity of marine body plans that resulted from the Cambrian Explosion. It also occurred for nearly the same reasons and, as will be shown, was as important for animal life on land as the Cambrian Explosion was for marine animal life” (Ward 2006:160). I totally agree that all these explosions occurred for the same reasons and by the same causes, which must have been goal-directed and intelligent." (my bold)

Comment: more evidence that evolution featured sudden advances and never was slow and steady. Ward's comment is most cogent.

Evolution: fish on land; mudskippers

by David Turell @, Sunday, May 21, 2023, 16:38 (550 days ago) @ David Turell

Very much a fish adapted to land trvel:

https://www.discovermagazine.com/planet-earth/meet-the-mudskipper-the-fish-that-walks-o...

"Mudskippers — of which there are 25 species, inhabiting mudflats, swamps, and mangrove forests from Africa to South Asia to South America — spend more than half of their life on land, doing everything from eating to mating out of the water.

***

"If fish have gills to extrapolate oxygen from the water even at depth, how do mudskippers breathe in the open air?

"There are two ways that they can go about this. In the first, they breathe through cutaneous respiration, so the amphibious fish are constantly capturing oxygen from the air through their soft skin — as well as the lining in their mouth and throat — which is filled with capillaries that can absorb oxygen.

"In order for this to work, however, they need to be wet, — and that’s why they spend most of their time out of the water. Still, in moist environments like mudflats, mudskippers can be seen rolling around in the mud to keep a sheen on their skin, flipping side to side in puddles to cool down and freshen up.

"The second method is more direct: A mudskipper’s gills trap water in their cavities and store it for longer-term oxygen retrieval. This is why some species can often be observed making their way to a body of water, opening their mouth and taking gigantic gulps of it.

“'They will put their jaws in the water and you can see them pumping water or sucking water in," says Gordon. "And then they end up puffing out their gill covers, and they have a mouth full of water that they walk around with,” says Gordon.

"To trudge around on land, mudskippers use their pectoral fins like two tiny arms. Their fins, in fact, have mini-joints similar to the elbow and shoulder, allowing them to fold their flippers for pushups off the land, propelling them forward one step at a time.

***

"As the name suggests, mudskippers also literally skip on mud. But that’s not thanks to their pectorals as much as it is thanks to their tails. By bending their tail rapidly, they're able to use it as a lever and launch themselves into the air, a behavior called a C-start. This, too, evolved in the water.

***

"When they’re not out hunting for food — snails, insects, small plants, anything the detritus of the midlands has to offer — mudskippers, especially the smaller species, build long, complicated burrows underground in between tides. To excavate their hideaways, they shovel long tube-like chunks of mud into their mouth, regurgitating them outside of their tunnel once they’ve reached the open air. These are great for hiding from predators, resting, or aiding their breathing and thermoregulating abilities.

***

"Unlike most fish, the mudskipper’s eyes are on top of their heads like periscopes for greater visibility, they can move independently of each other, and they can… blink.

"Blinking is typically reserved for limbed vertebrates. But because mudskippers evolved to thrive outside of water, they also developed this attribute. Blinking helps mudskippers moisturize and keep their eyeballs wet, clean them from anything that might obstruct their vision, like mud, and reflexively protect them from, say, objects flying their way, according to a paper published in 2023 in the Proceedings of the National Academy of Sciences. Their blinking method is also highly sophisticated, as they retract their eyeballs inwards into a skull cavity replete with water.

"But mudfish didn't require a lot of changes to their eye apparatus to evolve this behavior, says Brett Aiello, a biologist at Seton Hill University and one of the study's authors. They're relying on the same six extra-ocular eye muscles to retract the eye into the skull, so they took the structures they already had and they started using them in a completely different way.

***

"Hypothetically, we can look at walking fish like mudskippers as nature’s example of an ongoing evolutionary experiment, says Gordon." (my bold)

Comment: the bold says it all. It shows uu how the aquatic beginning of life ended up on land.

Evolution: the weird fauna of Madagascar

by David Turell @, Monday, May 22, 2023, 17:54 (549 days ago) @ David Turell

Another example of island effect on evolution:

https://phys.org/news/2023-05-ancient-seafaring-fauna-madagascar.html

"Three hundred miles off the southeastern coast of Africa, Madagascar is a land of mystery. There is such a rich diversity of vertebrates found only on the island that is so unlike anything seen elsewhere in the world that any evolutionary biologist has to wonder—how did they get there and when?

'Lemurs are only found here. A primate separated evolutionarily from apes and monkeys by more than 50 million years, lemurs have diversified into about 111 species, making up a third of all primate species in the world.

"The fossa, a distant cousin of the mongoose, is an apex island predator that has convergently evolved to have more cat-like traits and appearance, filling in the missing felines biome niche.

"Then there are the 36 species of tenrec, which can range in appearance from a tiny shrew-like mouse to a large tailless possum, hedgehog and mole lookalikes, filling out several convergent evolutionary niches usually held by more genetically diverse creatures.

"A pair of researchers at the University of Hong Kong in China and Temple University in Philadelphia decided to join the debate about just how the island became populated by so many unusual creatures. They detail their research findings in a paper, "The colonisation of Madagascar by land-bound vertebrates," published in the journal Biological Reviews.

"Three basic ways are possible, with versions of each having been postulated in the past

"Plate tectonics, meaning the land-bound creatures endemic to Madagascar evolved there, separated from the rest of the animal kingdom since the island split off from the ancient Gondwana supercontinent. Since this split began 170 million years ago, understanding when species evolved away from shared ancestors of other vertebrates eliminates all but a few of Madagascar's inhabitants from this possibility.

"Another is a land bridge spanning all or most of the way from Africa to Madagascar, allowing creatures to simply wander over. This might be aided by lower sea levels during ice ages or continental drift as land masses have moved over millions of years. As an example, all the marsupials of Australia walked there from South America when the two continents were further south and connected by Antarctica. However, the geologic record does not seem to support a period when the sea floor around Madagascar would be exposed, nor any string of islands above the surface to shorten the distance.

"This leaves arrival by sea, floating, swimming or rafting on vegetation carried by the currents.

"The team looked for evidence to build arrival time windows for 26 of Madagascar's land vertebrate clades—16 reptiles, five mammals, and five amphibians. The approach was designed to highlight the method of arrival by reconstructing the temporal influx patterns. If species arrived together in a few windows of opportunity, it would suggest a land bridge was available. If instead the colonization events looked randomly dispersed through time, getting washed ashore by sea currents might be a better explanation.

"The resulting colonization maps appeared temporally random with no temporal concentrations.

"This places the biological signals in agreement with the leading geological evidence, as well as the taxonomic composition of the fauna, in supporting over-water dispersal as the mechanism that explains all but a few of Madagascar's land-vertebrate groups.

"The exception being podocnemid turtles and typhlopoid snakes, which the researchers believe have been on Madagascar since before it was an island. From here, they survived the extinction event that killed off the dinosaurs and watched as waves of hapless creatures washed up on the shores over millions of years of colonization events.

***

"The researchers note the preponderance of reptile clades over land-mammal and amphibian groups in Madagascan fauna. The reptile abundance is a characteristic common on islands and archipelagoes that were never connected to a continent and where over-water colonization is the only possible route. Reptiles are much more resistant to dehydration, the main obstacle in a long voyage by sea.

"The Madagascan mammals have something else in common with remote island mammals in other parts of the world. They all originate from small-bodied ancestors with low energy requirements and the ability to enter into torpor, a hibernation-like state of reduced metabolism, which may have allowed them to withstand the journey to new lands."

Comment: storms can carry animals more quickly than calm periods, but teh researchers didn't consider them. An amazing collection of organisms.

Evolution: the power of a few genes

by David Turell @, Monday, May 22, 2023, 18:29 (549 days ago) @ David Turell

Feathers or no feathers:

https://www.sciencealert.com/tweaking-just-a-few-genes-transforms-scales-into-feathers?...

"The feathers, fur, and scales that adorn different members of the animal kingdom may look quite different, but they're all made of the same basic stuff. And, as it turns out, it only takes a relatively simple genetic tweak to produce one instead of the other.

"By targeting the sonic hedgehog (Shh) gene, geneticists Michel Milinkovitch and Rory Cooper of the University of Geneva in Switzerland altered embryonic chickens to grow feathers instead of scales on their usually squamous feet.

"And the alteration is permanent. Once hatched, the chicken's unusually feathery feet will stay that way for life.

"'We demonstrate that stage-specific transient agonism of sonic hedgehog (Shh) pathway signaling in chicken triggers a complete and permanent transition from reticulate scales to feathers on the ventral surfaces of the foot and digits," the researchers write.

"'Resulting ectopic feathers are developmentally comparable to feathers adorning the body, with down-type feathers transitioning into regenerative, bilaterally symmetric contour feathers in adult chickens."

"Previously, Milinkovitch's lab has demonstrated that the various keratinized skin appendages (hair, feathers, and so forth) have the same evolutionary origin in the ancestral reptilian hundreds of millions of years ago that later diversified into the incredible variety of animals living in the world today.

"And in all these animals, the development of these structures begins as structures known as placodes in the skin, which thicken and then start to grow into the scales, spines, or whatever appendage that animal tends to have.

"Shh plays a key role in the development of these skin appendages. The signaling pathway is an important one with its fingers in many embryonic pies, mediating the development of body shapes and structures, patterning, differentiation, and growth.

"For instance, Shh is an important factor in feather form and diversification, flight feather positioning in birds, and the development of hair follicles in mice.

***

"The researchers say this has implications for our understanding of how animals evolved and diversified. Natural variations in Shh signaling are probably an evolutionary driver of skin appendage diversity, and this diversity was not particularly difficult to achieve.

"'Our results indicate that an evolutionary leap – from scales to feathers – does not require large changes in genome composition or expression," Milinkovitch says.

"'Instead, a transient change in expression of one gene, Shh, can produce a cascade of developmental events leading to the formation of feathers instead of scales.'"

Comment: this shows some evolutionary advances have simple genes behind them. But we do not know how the genes do it as a series of biochemical reactions. Still a black box between gene and results.

Evolution: the human puzzle

by David Turell @, Monday, May 22, 2023, 19:39 (549 days ago) @ David Turell

News studies indicate many starting points:

https://www.nationalgeographic.com/premium/article/did-early-humans-interbreed-with-a-g...


"Based on knowledge of how fast our DNA changes from generation to generation, it is possible to estimate a time when the common ancestors of people carrying different gene variants still had the same ones. Models of the genetic evolution of our species so far have envisioned ancestral populations as the solid stem of a family tree that later split to create branches of separate populations. Any individuals within the stem would have been genetically similar, while ones on different branches would hardly mix anymore. Yet by modeling other scenarios, the new study suggests this stem may not have been as united as we thought.

“'When we assume in our computer model that the stem population wasn’t quite as solid, but that parts of it would occasionally branch off and then later merge back together, we get a much better match with the genetic variation found in human populations today,” says population geneticist Aaron Ragsdale of the University of Wisconsin-Madison, lead author of the new study.

"And geological clues can help explain what may have driven early groups of Homo sapiens apart or back together. “During the period we are interested in, roughly from a million to a 100,000 years ago, we know certain changes in the climate such as glacial cycles would have caused populations to expand or diverge into new areas in some periods, and contract or merge in others,” says study co-author and geneticist Brenna Henn of the University of California, Davis.

"By assuming there was more exchange among the ancestors of Homo sapiens than previously thought, the model accounts for “these very old differences that previous models had struggled to explain without invoking ghosts,” Ragsdale says.

"One intriguing episode emerging from the new model occurred around 120,000 years ago, at the end of a glacial period that caused a transition in parts of Africa from cold and arid to warm and humid conditions. Rising sea levels during this time may have driven people toward the interior of the continent.

“'In this period, we see two branches of the human family tree merging to become the ancestors of today’s Khoe-San, a number of related but culturally distinct groups now confined to southern Africa that are genetically more diverse than everybody else on the planet combined,” Henn says.

"The new analysis is the first to include genetic data from dozens of Nama people, a pastoralist Khoe-San group in Namibia that Henn has collaborated with for years to reconstruct its unique history. “It’s funny,” she recalls, “when I talk to some of the participants and tell them we find they have the highest genetic diversity, and that they’ve probably been isolated in southern Africa for many thousands of years, they look at me and say: Yeah, we know that.”

***

"Around 100,000 years ago, the model suggests, a second merger between stems occurred that gave rise to the ancestors of West- and East-Africans, some descendants of whom later dispersed out of Africa to populate the other continents.

“'This is in line with recent ideas from paleoanthropology that various populations within Africa have contributed ancestry to the group of Homo sapiens that left Africa,” Henn says. “It also shows we really need to be more specific instead of just speaking of African ancestry—the diversity is incredible.”

"The new research supports the idea that “we are a species with many origins in Africa, with ancestry flowing from several populations, not just one,” says paleoanthropologist Eleanor Scerri of the Max Planck Institute for Geoanthropology in Germany, who was not part of the new study.

***

"The new research presents an intricate image of our species’ origins in which early Homo sapiens were not confined to one area or population, and genetic variations that still exist may have evolved early on. It’s “kind of difficult to wrap your head around it,” Ragsdale admits.

"It’s a common pattern in science: as our understanding grows, simple narratives fade and complexity accumulates. Whether Homo sapiens will prove clever enough to entirely elucidate the mystery of its own origin remains to be seen."

Comment: the whole study is a support for humans as the goal since this study has humans popping up everywhere in Africa.

Evolution: Avalon explosion not from oxygen

by David Turell @, Wednesday, July 19, 2023, 19:03 (491 days ago) @ David Turell

Levels too low:

https://www.sciencedaily.com/releases/2023/07/230718105621.htm

"No, oxygen didn't catalyze the swift blossoming of Earth's first multicellular organisms. The result defies a 70-year-old assumption about what caused an explosion of oceanic fauna hundreds of millions of years ago.

"Between 685 and 800 million years ago, multicellular organisms began to appear in all of Earth's oceans during what's known as the Avalon explosion, a forerunner era of the more famed Cambrian explosion. During this era, sea sponges and other bizarre multicellular organisms replaced small single-celled amoeba, algae and bacteria, which until then, had had run of the planet for more than 2 billion years.

***

"By studying the chemical composition of ancient rock samples from an Omani mountain range, the researchers have been able to "measure" oxygen concentrations in the world's oceans from when these multicellular organisms appeared. Defying expectations, the result shows that Earth's oxygen concentrations had not increased. Indeed, levels remained 5-10 times lower than today, which is roughly how much oxygen there is at twice the height of Mount Everest.

"'Our measurements provide a good picture of what average oxygen concentrations were in the world's oceans at the time. And it's apparent to us that there was no major increase in the amount of oxygen when more advanced fauna began to evolve and dominate Earth. In fact, there was somewhat of a slight decrease," says Associate Professor Christian J. Bjerrum, who has been quantifying the conditions surrounding the origin of life for the past 20 years.

***

"'The fact that we now know, with a high degree of certainty, that oxygen didn't control the development of life on Earth provides us with an entirely new story about how life arose and what factors controlled this success," says the researcher, adding:

"'Specifically, it means that we need to rethink a lot of the things that we believed to be true from our childhood learning. And textbooks need to be revised and rewritten."

***

"In the new study, the researchers analysed rock samples from, among other places, the Oman Mountains in northern Oman. While quite high and very dry today, the mountains were on the seabed during the Avalon explosion's rapid blossoming of organism diversity.

"The researchers have had their findings confirmed in fossils from three different mountain ranges around the world: the Oman Mountains (Oman), Mackenzie Mountains (NW Canada) and the Yangtze Gorges area of South China.

"Over time, clay and sand from land are washed into the sea, where they settle into layers on the seabed. By going down through these layers and examining their chemical composition, researchers can get a picture of ocean chemistry at a particular geologic time."

Comment: unlike the Cambrian explosion which is associated with higher oxygen levels the Avelon is not. Therefore, there is another driver of evolution. God, the designer, is my answer.

Evolution: carnivorous plant origin

by David Turell @, Saturday, December 02, 2023, 20:45 (355 days ago) @ David Turell

New genetic study:

https://www.sciencedaily.com/releases/2023/11/231130184214.htm

"Scientists sequenced the genome of the East Asian pitcher plant, Nepenthes gracilis, a species of carnivorous plant related to Venus flytraps, as well as sundews, beets and spinach.

***

"'Our findings not only provide key insights into the adaptive landscape of the Nepenthes genome, but also broaden our understanding of how polyploidy -- having multiple sets of chromosomes -- can stimulate the evolution of new functions," says Victor Albert, PhD, Empire Innovation Professor

***

"In this new study, Albert and Fukushima's teams discovered that the specialized pitcher trap of the Asian pitcher plant, or Nepenthes, may have been promoted by polyploidy. Nepenthes' lineage had already evolved carnivory, so the duplicated genomes may have simply tweaked its mode of capture.

***

"Some of Nepenthes' duplicate carnivory genes may have originally evolved for defending against what eventually became their prey. The enzymes that help Nepenthes break down insects' hard exoskeletons, for example, were repurposed from those that originally shielded plants from being eaten by these animals.

"'This lineage of Nepenthes didn't evolve new genes to become carnivorous -- they grabbed collections, or toolkits, of genes that were already there," Albert says.

"One hypothesis suggests that polyploidy has a negligible effect on long-term evolution, as species with multiplicated genomes may undergo extinction at rates higher than those like humans, which have just two sets of chromosomes. Yet the study's findings add to the evidence that ancient polyploidy events can sometimes underlie evolutionary jumps still visible among plants today.

"Nepenthes is part of the just 6% of flowering plant species that are dioecious, meaning each individual plant produces either male or female flowers. In fact, Nepenthes is the only dioecious carnivorous plant.

"Albert and Fukushima's team also identified a male-specific region of the genome containing three genes potentially responsible for controlling these sex differences. One of these, called LEAFY, is a key gene expressed early in flower development that acts as a master regulator.

"'LEAFY seems to have had a duplicate form and moved into the Y chromosome region of Nepenthes, thereafter diverging in its function. This use of LEAFY is unprecedented so far in flowering plants," Albert says. "The LEAFY gene is such a central regulator across flowering plants that, when artificially added or deleted through genetic engineering, it will change a plant's flowering time.'"

Comment: we know meat-eating plants always need help with nutrition since they live on poor nitrogen and phosphate soils. Of course, my view is this is another of God's designs.

Evolution: origin of eukaryotes: 1.6 byo

by David Turell @, Wednesday, June 07, 2023, 20:03 (533 days ago) @ David Turell

Based on finding protosteroides in rocks with fossils:

https://www.newscientist.com/article/2377272-1-6-billion-year-old-steroids-may-be-trace...

"The earliest life forms on Earth were simple single-celled organisms like bacteria that emerged more than 3 billion years ago. At some point – we don’t know exactly when – came more complex organisms called eukaryotes, whose cells have a nucleus. These eventually evolved into all the animals, plants, fungi and algae alive today.

"The oldest confirmed eukaryote fossils are red and green algae found in 1-billion-year-old rocks in Canada and China. Eukaryote fossils are confirmed by their shape and the detection of steroids – molecules that eukaryotes use to build cell membranes – co-located in the same rocks.

'Older fossils that look like they might be eukaryotes have been found in rocks dating back 1.6 billion years, but scientists haven’t been able to find the tell-tale steroid molecules that should be associated with them, which has created a conundrum.

"Now, evidence collected by Brocks and his colleagues suggests these older fossils are in fact eukaryotes, but a more primitive form that produced simpler steroid molecules known as “protosteroids”.

"When modern eukaryotes make steroids, including cholesterol, they follow a 12-step biochemical pathway. The molecules made in the first few steps are protosteroids. (my bold)

"Brocks and his colleagues found examples of these protosteroids in 1.6-billion-year-old rocks collected from the McArthur river mine near Borroloola in Australia’s Northern Territory, an area that once formed an ancient seabed. They did this by grinding up the rocks and then chemically analysing them.

"The researchers then studied a range of other rocks from around the world and also found abundant protosteroids in those aged between 1 billion and 1.6 billion years old.

"This finding suggests that the earliest eukaryotes emerged at least 1.6 billion years ago and made protosteroids. Around 1 billion years ago, eukaryotes evolved the ability to make modern steroids, which presumably conferred advantages that gave them the “upper hand” and allowed them to thrive while the earlier eukaryotes died out, says Brocks.

"These more sophisticated eukaryotes later evolved into algae, fungi, plants and animals that all produce modern steroids. The first animal eukaryotes, for example, emerged about 600 million years ago."

Comment: very suggestive, but much more has to be done to tie this up. Note my bold Twelve-step processes cannot happen from chance mutations.

Evolution: the role of parasites

by David Turell @, Tuesday, June 20, 2023, 15:50 (520 days ago) @ David Turell

Genes appeared to defend against Chagas disease:

https://www.the-scientist.com/news-opinion/parasite-drove-natural-selection-in-amazonia...

"Diseases have the potential to shape human evolution, leaving an indelible mark on the genetic code of generations to come. And that’s exactly what happened in South America, finds a study published March 8 in Science Advances. Based on genome datasets spanning two decades, researchers concluded that Chagas disease, a deadly tropical disease caused by a parasite, drove a strong pulse of natural selection in the Amazon roughly seven thousand years ago—the first documented example of pathogen-driven natural selection in the Americas. As a result, many Amazonian Indigenous people alive today carry mutations that protect them from Chagas disease.

***

"To look for disease-driven natural selection, Hünemeier and colleagues analyzed genome data from 118 individuals belonging to 19 Indigenous groups throughout the Amazon stored in the Human Genome Diversity Project database.

***

"After accounting for genetic drift, natural selection appeared to be influencing a handful of genes related to cardiovascular function and metabolism. But three gene variants stood out as being present in higher- or lower-than-expected frequencies in all of the Indigenous populations: PPP3CA, DYNC1I1, and NOS1AP. Previous work has associated PPP3CA and DYNC1I1 with the immune response to Chagas disease and NOS1AP to the body’s reaction to a mosquito bite.

"Hünemeier says she was surprised to find genes linked to Chagas disease. Initially, she says she expected to see evidence that viral or bacterial pandemics were the primary drivers of evolutionary change, as that’s what has been observed for human populations in Europe and Africa. “As a geneticist and biologist, I always think about viruses or bacteria. I never thought about [parasitic infections like] Chagas disease.”

"Not that the disease isn’t noteworthy enough. Chagas disease is a leading cause of death in Latin America. It’s caused by the parasite Trypanosoma cruzi, which is transmitted to animals and people by insect vectors called triatomine bugs or kissing bugs due to their tendency to bite their unsuspecting host’s face while they sleep. The bugs carry the parasites in their feces and can infect hosts after a bite. Thirty percent of those infected develop congestive heart failure as the parasites make their way into the heart.

***

"...before Hünemeier would be convinced the correlations weren’t spurious, she needed to see evidence that the genes function in slowing T. cruzi infection. So, she collaborated with researchers at Harvard Medical School to employ an in vitro approach to test if the selected alleles conferred protection from the parasite. The team focused on PPP3CA, as it had the strongest signal of selection. They disrupted the gene’s expression in human pluripotent stem cell–derived heart cells and found that T. cruzi had a harder time infecting the cells. Further experiments suggested that the PPP3CA variant found in Indigenous populations may lead to a reduction in the expression of PPP3CA in atrial cells of the heart, thus protecting these cells from infection.

"Lindo says the combination of computationally sound genetic findings and functional relevance makes the conclusion robust. The one line of evidence missing, however, is epidemiological data showing that these genes do in fact confer resistance to parasitic infection, but he admits that “these studies would be hard to do.'”

Comment: this study parallels our knowledge of malaria and he development of sickle cell disease in Africa.

Evolution: life below ground

by David Turell @, Monday, July 24, 2023, 17:33 (486 days ago) @ David Turell

A new massive discovery 1.5 billion years old:

https://phys.org/news/2023-07-discovery-oldest-3d-preserved-microorganisms.html

"Researchers from Technische Universität Berlin, the National Academy of Sciences of Ukraine, the Museum of Natural History Berlin and the National Museum of Natural History in Luxembourg have discovered the oldest, three-dimensionally preserved microfossils on Earth to date on minerals from the Volyn quartz mine near the city of Zhytomyr (Ukraine).

***

"The finds are the first fossilized microorganisms dating back to what is referred to as the "boring billion," the first seemingly uneventful billion years before the Precambrian Revolution. "Only then, about 600 million years ago, did evolution produce skeletons made of calcium carbonate or phosphate; invertebrates such as clams, corals or snails emerged, and then vertebrates with backbones. Real fossils with preservable skeletons only became possible as a result of this biomineralization."

"Because living organisms had no skeletons more than 600 million years ago, they could not actually preserve their form—which is why very little is known about this period. It was mainly only in sedimentary rocks, i.e., former deposits on sea floors, that carbon remains of the microorganisms were preserved, which were then destroyed by millions of years of mechanical deformation. And it is only because life forms prefer the lighter carbon isotope 12C to the heavier variant 13C that it has been possible to speculate at all that this was once biological material.

"It is only recently that researchers found for the first time biological compounds such as cholesterol in rocks in Australia, that are 1.5 billion years old and that directly suggest primordial life forms. In other rocks, the early microorganisms have left only faint imprints, from which it is difficult to discern their form.

"'What we are looking at now under our electron microscope are mostly fibrous structures. Either thin filaments that branch out, or thick ones that have small protrusions or dents," Franz explains. The thickness of the objects varies between 10 and 200 micrometers and their length is up to several millimeters, sometimes with a thin channel in the middle.

"This means these primordial microorganisms can also be seen with the naked eye. What is particularly exciting is that the researchers also found a few previously unknown forms of microorganisms. These had shell or spherical-shaped structures or tentacle-like branches.

"'By analyzing the carbon isotopes 12C and 13C, we have also been able to prove that our finds must once have been living creatures," Franz explains. The age of the finds was measured using a special isotope method, which resulted in a minimum age for the fossils of 1.5 billion years. The researchers also detected the substance chitosan in certain filamentous objects using infrared spectroscopy, as well as the elements bismuth and tellurium using an electron microscope.

"'This all points to a fungus-like organism," Franz says. However, that would only apply to some of the finds, he adds. "From the other fossilized microorganisms, we can at least assume that they must have been single or multicellular organisms with distinct cell structures." These probably lived with the fungi in a common ecosystem.

"The location of the fossilized primordial microorganisms on granite rock in a quartz mine suggests both their way of life and the reasons for their exceptionally good state of preservation. "Even today, microorganisms live up to three kilometers deep in the Earth's crust," Franz explains. They live there—without sunlight—on substances such as phosphorus, nitrogen or carbon dioxide, some of which are dissolved in water and migrate downward from above through fissures and crevices or are already present there.

"The microorganisms obtain the energy they need for their metabolism from chemical processes on minerals. In the granite caverns of the Volyn quartz mine, such colonies of microorganisms were apparently already present near the Earth's surface 1.5 billion years ago."

Comment: since life is thought to be 3.6 billion years old, these fossils fill a gap in time. We have much evidence of subterranean life present today, so these organisms are not surprising. Look at the pictured animals.

Evolution: life in deep sea

by David Turell @, Tuesday, July 25, 2023, 15:47 (485 days ago) @ David Turell

No light, no carbonates, no shells:

https://www.sciencealert.com/a-hidden-line-deep-in-the-ocean-divides-animals-into-two-c...

"Deep under the ocean, not all ecosystems are built alike.

"And, as an international team of scientists has now found, the very deepest depths are dominated by a particular kind of organism. Below a depth of around 4,400 meters (14,436 feet), most of the creatures lurking in the darkness have soft, squishy bodies. It's only above that line that hard-shelled mollusks are generally found.

***

"'But as deep exploration and technology progressed, these ecosystems keep unveiling a large biodiversity, comparable to that in shallow water ecosystems, only found on a much wider spatial spread."

***

"Using deep-sea robots, Simon-Lledó and his team collected a large database of images from an abyssal plain known as the Clarion-Clipperton Zone, extending 5,000 kilometers (3,107 miles) at the bottom of the Pacific Ocean between Mexico and Kiribati at depths between 3,500 and 6,000 meters.

"They painstakingly cataloged all the animals they could find larger than 10 millimeters in size from these images. They indexed more than 50,000 abyssal creatures – and they noticed a marked difference in the types of animals found in shallower depths compared to those at the very deepest parts of the zone.

***

"Hard shells are formed from calcium carbonate, which diffuses through the ocean from the surface. Below a certain depth, however, insufficient calcium carbonate remains, leading to a lack of it on the seafloor, to be taken up by hard-shelled fauna.

***

"'Overall, this reflects a much higher ecological heterogeneity, at multiple scales, than was previously expected for benthic assemblages across the northeast Pacific abyssal seabed," the researchers write in their paper.

"'This overlooked heterogeneity, stemming from geochemical and climatic forcing, has crucial implications for future ecological and macroecological research in abyssal communities and for the success of regional-scale conservation strategies implemented to protect biodiversity in the Clarion-Clipperton Zone and probably in other abyssal areas targeted by deep-sea mining worldwide.'"

Comment: it seems life can survive anywhere and adapt to any set of conditions with its ecosystem intact. The many photos are worth a look.

Evolution: curiosity in oraungutans

by David Turell @, Tuesday, August 15, 2023, 16:57 (464 days ago) @ David Turell

A new study:

https://phys.org/news/2023-08-factors-affect-curiosity-species.html

"...almost nothing is known about how great apes respond to novelty in the natural habitats in which they evolved. Now, a team from the Max Planck Institute of Animal Behavior (MPI-AB) has succeeded in measuring the behavior of wild orangutans in their first encounter with an unfamiliar object.

"The experiments, conducted in an Indonesian rainforest, uncovered a mix of social, environmental, and age factors that made orangutans more likely to explore. Published in Scientific Reports, the study reveals the conditions that spark curiosity in orangutans, and sheds light on how our own curious natures might have evolved.

***

"'Curiosity is a trait that has driven the exceptional ability of humans to learn and innovate," says Schuppli, a group leader at MPI-AB. "If we want to know how the trait evolved in us, we have to study it in our closest living relatives."

"Curiosity, which describes an individual's motivation to learn about the unknown, has been studied before in great apes; however, due to the logistical difficulties of studying wild animals, almost all tests have occurred in captivity. "We know that apes are very curious to explore when they are in the safe and controlled conditions of a zoo," says Schuppli. "But these results tell us little about what really triggered or suppressed curiosity over our evolutionary history."

***

"The tree hole and food were familiar, but deploying these in an unusual way represented a novel foraging situation. With a team of local and international scientists, Schuppli hoisted the experimental log into trees about 10 meters from orangutans—and watched what happened.

"During the trials, the orangutans spent on average 30 minutes in the vicinity of the novel log. During this time, they explored the novel log by intensively observing it over extended periods of time and approaching it closely. Overall, however, orangutans rarely touched the branch directly; and when they did, they often used a tool, such as a stick to do so.

"The orangutans were pretty cautious," says Tri Rahmaeti, a team member from Universitas Nasional in Indonesia and co-author on the study. "The honey reward could have easily been scooped out of the log using a finger, but they still preferred to use a tool so they didn't have to make physical contact."

"But there were significant differences in the behaviors. Using statistical techniques, the team uncovered traits of individuals and features in the environment that amplified exploration. Young orangutans were far more likely than adults to observe and approach. And, orangutans were more likely to approach the log if they saw another individual heading that way too. The habitat also seemed to play a role: in areas with abundant food, orangutans observed more but approached less.

"Says Schuppli, "On the one hand, the results confirmed our hunch that orangutans in the wild are not that keen to explore new objects. This could be because in nature, orangutans live very long lives in stable habitats where novelty is rare. So, the potential risk of approaching something unknown doesn't outweigh the potential reward."

"'On the other hand, the experiment showed that there is flexibility in the behavior. Orangutans have the potential to be curious about novelty in nature, but only under certain conditions. And by experimentally testing this in a wild population, we pinned down the conditions."

"Of these conditions, Schuppli finds the social factor most illuminating. "Orangutans are the least social of all great apes, and yet we find that the presence of association partners increases their curiosity," she says."

Comment: we are naturally very curious. A comparative study with isolated Brazilian or African tribes would be very interesting.

Evolution: monkey works for the theory

by David Turell @, Friday, August 25, 2023, 17:41 (454 days ago) @ David Turell

There are four species of South American Monkeys genetically related to African Monkeys:

https://evolutionnews.org/2023/08/fossil-friday-did-monkeys-raft-four-times-across-the-...

Gunter Bechly again:

"A few years ago, I published an article at Evolution News titled “Rafting Stormy Waters” (Bechly 2018), which discussed the various highly implausible events of oceanic dispersal with vegetation rafts to explain the biogeographic patterns of living animals. This includes the dispersal of monkeys from Africa to South America that implied a 60-day voyage of 1,400 km across the Eocene early Atlantic Ocean (Gabbatiss 2016).

"Now, a new fossil find has made this problem much worse. Marivaux et al. (2023) describe in the journal PNAS a new primate genus from the Paleogene of Western Amazon and provide a new phylogenetic analysis of the earliest fossil Neotropical monkeys. This phylogenetic study shows that three genera of fossil monkeys, all known by fossil teeth from the Early Oligocene of South America, are not related to living New World monkeys (Platyrrhini), but are nested in three distinct African clades respectively: Ashaninkacebus is nested within the Eosimiidae clade (Marivaux et al. 2023), Perupithecus is nested within the Oligopithecidae clade (Bond et al. 2015), and Ucayalipithecus is nested within the Parapithecidae clade (Seiffert et al. 2020). This implies three independent Eocene colonization events of South America by rafting from Africa, additional to the dispersal of platyrrhine monkeys, and additional to the dispersal of caviomorph rodents.

"Did viable populations of monkeys really raft successfully four times across the Atlantic Ocean from Africa to South America? Seriously? One such event is already a stretch, but four times is beyond ridiculous. If such events happened so often with unlikely passengers like monkeys, why don’t we find many more cases of similar Neotropic-Afrotropic relationships in much more likely candidates such as reptiles or insects, which could far more easily survive long transoceanic rafts? Not to mention the simple fact that in the whole history of human seafaring we have never observed rafting vertebrates in the middle of the ocean and only observed rafting dispersal events in cases of relatively close islands and even there only with reptiles. Longrich (2021) called this an “incredible ocean crossing” which “beat odds that make Powerball lotteries seem like a safe bet.” Something is clearly wrong here, and I mean way off. But evolutionary biology has a cheap cop out that was made explicit by Nobel laureate George Wald (1954):

"Given so much time, the [nearly] “impossible” becomes possible, the “possible” becomes probable, and the “probable” becomes virtually “certain.”

"It does not require that one be a Darwin doubter to recognize that this hardly qualifies as good science, as shown, for example, in this highly recommended article by Lu (2021) from an AI perspective. Time is not the hero of the plot when actual improbabilities and probabilistic resources are ignored or glossed over with fancy storytelling according to the unspoken dogma of evolutionary biology: It must have been possible because it happened. After all, God forbid if we were to consider explanations beyond blind naturalistic mechanisms."

Comment: this just-so story by Darwinists is beyond ridiculous. Genetics doesn't lie. The fossils related to each other.

Evolution: theory of functional information

by David Turell @, Thursday, October 19, 2023, 16:07 (399 days ago) @ David Turell

A huge group of scientists and philosophers developed this:

https://www.livescience.com/space/scientists-propose-missing-law-for-the-evolution-of-e...

"The "law of increasing functional information" says that complex systems in nature evolve to become more complex.

"Researchers have proposed a "missing" scientific law for the evolution of life, minerals, planets, stars and pretty much everything else in the universe.

"This new law identifies "universal concepts of selection" that drive systems to evolve, whether they're living or not. It addresses the tendency for natural systems in the universe to become more complex over time.

"The research team behind the law, which included philosophers, astrobiologists, a theoretical physicist, a mineralogist and a data scientist, have called it "the law of increasing functional information."

***

"Scientific laws are descriptions of observed phenomena. They don't explain why those phenomena exist or what causes them, but they advance our scientific understanding and provide a launching pad for future research.

"The new law states that "the functional information of a system will increase (i.e., the system will evolve) if many different configurations of the system undergo selection for one or more functions," the researchers wrote in the study.

"The law applies to systems that form from numerous components — such as atoms, molecules and cells — which can be arranged and rearranged repeatedly and adopt multiple different configurations, according to the statement. The law also says these configurations are selected based on function, and only a few survive.

"Expanding Darwin's theory of evolution, the researchers claim that non-living systems also evolve when a novel configuration of components works and improves function. One example of a function is stability, according to the statement.

***

"Milan Cirkovic, a research professor at the Astronomical Observatory of Belgrade, called the study "a breeze of fresh air blowing over the difficult terrain at the trijunction of astrobiology, systems science and evolutionary theory."

"However, The Guardian reported that not everyone is quite so taken with the law, including astronomer Martin Rees, professor emeritus of cosmology and astrophysics at the University of Cambridge.

"'Given an immense amount of space and time, and the laws of physics and chemistry, an expanding variety of materials, environments and structures will emerge in the inanimate world," Rees said. "But I don’t see that this need be a manifestation of any new underlying principle analogous to the role of Darwinian selection via inheritance in the biological world.""

Comment: I'm with Rees. This might be applicable in the non-biological realm but not in the biological. Certainly, a great amount of descriptive information will appear as systems evolve, but 'functional information' is instructive and immaterial. Where did that come from???

Evolution: theory of functional information

by David Turell @, Thursday, October 19, 2023, 19:47 (399 days ago) @ David Turell

Hossenfelder comments:

https://quizwithit.com/start_thequiz/1697366102073x432282544378655300

"There was not one but three papers that put forward new laws of nature and they were all pretty much on the same topic, the growth of complexity.

***

"The three papers are of very different quality. The first one is about something the author calls “the second law of infodynamics”. It’s an idea he proposed in an earlier paper. In the new paper he claims that this law is fulfilled and that supports the idea that we live in computer simulation.

"The problem is the way that he defines his new law it’s just identical to the second law of thermodynamics. It’s not wrong but it’s not new either and it’s nothing to do with computer simulations.

"The second paper comes from a group of philosophers. On the upside it makes more sense that the first paper, because it’s specifically about systems that undergo some kind of evolution. On the downside it’s mathematically vague.

"They propose to measure complexity by a quantity called “functional information” that was introduced by another author about 20 years ago. It tells you loosely speaking how good a system is at fulfilling a certain function. In the new paper they now call their idea the “law of increasing functional information”. So, systems improve how they fulfil certain functions.

"The problem is, as they write themselves, that this functional information can only be calculated when you specify the function of a system, which moves the burden from figuring out what complexity is to figuring out what a function is.

***

"The authors of the third paper don’t explicitly claim they introduce a new law of nature, they’re a little bit more modest, but address the same question. They do it with an idea they call “Assembly Theory”.

"The idea is that the complexity of an object can be measured by how difficult it is to assemble and how well it can make copies of itself. The good thing about this idea is that it’s mathematically well-defined. You can actually compute this quantity, at least theoretically. They look at some examples from chemistry to explain how it works.

"But just because you have a mathematically well-defined quantity doesn’t mean it explains anything, so we’ll have to see if this idea is actually good for something."

Comment: she doesn't discuss a relationship to living evolution. It is all highly nonspecific ruminations.

Evolution: very early eukaryote fossils

by David Turell @, Tuesday, November 07, 2023, 20:03 (380 days ago) @ David Turell

New find in Australia:

https://phys.org/news/2023-11-microfossils-earlier-complex-life.html

"Microfossils from Western Australia may capture a jump in the complexity of life that coincided with the rise of oxygen in Earth's atmosphere and oceans, according to an international team of scientists.

"he findings, published in the journal Geobiology, provide a rare window into the Great Oxidation Event, a time roughly 2.4 billion years ago when the oxygen concentration increased on Earth, fundamentally changing the planet's surface.

"The event is thought to have triggered a mass extinction and opened the door for the development of more complex life, but little direct evidence had existed in the fossil record before the discovery of the new microfossils, the scientists said.

***

"When compared to modern organisms, the microfossils more closely resembled a type of algae than simpler prokaryotic life—organisms like bacteria, for example—that existed prior to the Great Oxidation Event, the scientists said. Algae, along with all other plants and animals, are eukaryotes, more complex life whose cells have a membrane-bound nucleus.

***

"'The microfossils have a remarkable similarity to a modern family called Volvocaceae," Barlow said. "This hints at the fossil being possibly an early eukaryotic fossil. That's a big claim, and something that needs more work, but it raises an exciting question that the community can build on and test."

***

"The scientists analyzed the chemical makeup and carbon isotopic composition of the microfossils and determined the carbon was created by living organisms, confirming that the structures were indeed biologic fossils. They also uncovered insights into the habitat, reproduction and metabolism of the microorganisms.

"Barlow compared the samples to microfossils from before the Great Oxidation Event and could not find comparable organisms. The microfossils she found were larger and featured more complex cellular arrangements, she said.

"'The record seems to reveal a burst of life—there's an increase in diversity and complexity of this fossilized life that we are finding," Barlow said.

"Compared to modern organisms, Barlow said, the microfossils have explicit similarities with algal colonies, including in the shape, size and distribution of both the colony and individual cells and membranes around both cell and colony.

"'They have a remarkable similarity and so, by that way of comparison, we could say these fossils were relatively complex," Barlow said. "There is nothing like them in the fossil record, and yet, they have quite striking similarities to modern algae."

"The findings have implications for both how long it took complex life to form on early Earth—the earliest, uncontroversial evidence of life is 3.5 billion years old—and what the search for life elsewhere in the solar system may reveal, the scientists said."

Comment: This sudden burst of eukaryotes 2.4 billion years ago produces another gap in evolution from Archaea to this group. Just like the Cambrian gap, no precursors. Perhaps such forms can be found.

Evolution: very early octopus fossil

by David Turell @, Wednesday, November 08, 2023, 19:30 (379 days ago) @ David Turell

From 330 million years ago:

https://phys.org/news/2022-03-octopus-ancestors-era-dinosaurs.html

"Scientists have found the oldest known ancestor of octopuses – an approximately 330 million-year-old fossil unearthed in Montana.

"The researchers concluded the ancient creature lived millions of years earlier than previously believed, meaning that octopuses originated before the era of dinosaurs.

"The 4.7-inch (12-centimeter) fossil has 10 limbs—modern octopuses have eight—each with two rows of suckers. It probably lived in a shallow, tropical ocean bay.

"'It's very rare to find soft tissue fossils, except in a few places," said Mike Vecchione, a Smithsonian National Museum of Natural History zoologist who was not involved in the study. "This is a very exciting finding. It pushes back the ancestry much farther than previously known." (my bold)

***

"The creature, a vampyropod, was likely the ancestor of both modern octopuses and vampire squid, a confusingly named marine critter that's much closer to an octopus than a squid. Previously, the "oldest known definitive" vampyropod was from around 240 million years ago, the authors said.

"More information: https://evolutionnews.org/2023/11/will-the-octopus-ever-find-its-place-in-the-evolution...

"A detailed genetic analysis found that the common octopus has 2.8 billion base pairs of genes:

"To gain a deeper understanding of their biology and evolutionary history, validated data on the composition of their genome is needed, which has been lacking until now. Scientists from the University of Vienna together with an international research team have now been able to close this gap and, in a study, determined impressive figures: 2.8 billion base pairs — organized in 30 chromosomes.

***

“'There are tens of thousands of both chemical and mechanical receptors in each sucker,” he says. “To put that into perspective, each of your fingertips has a few hundred mechanical receptors.”
The team found that if one of an octopus’ suckers finds something interesting, like food, it triggers a sucker next to it to double check. If that sucker is also interested in the potential treat, it triggers the next one. This creates a cascade of neurons down the arm’s ganglia (nerve cell clusters), encouraging the octopus’ arm to then wrap around the item of interest.

"This entire process bypasses the animal’s brain—but the system isn’t perfect. Because the suckers can act independently of the brain there’s not always consensus, Sivitilli explains. “Sometimes, the arm plays tug of war with itself,” he says.

***

"Another factor that may be linked to high cephalopod intelligence is gene editing:
A team of scientists led by Joshua Rosenthal at the Marine Biological Laboratory and Eli Eisenberg at Tel Aviv University have shown that octopuses and their relatives — the cephalopods — practice a type of genetic alteration called RNA editing that’s very rare in the rest of the animal kingdom. They use it to fine-tune the information encoded by their genes without altering the genes themselves. And they do so extensively, to a far greater degree than any other animal group.

***

"[Tamar] Gutnick and his colleagues were able to pick up clear signals of brain activity, but deciphering these patterns is another story. Some of the brain waves resembled the size and shape of mammalian brain activity, but other pulses from the neurons of octopuses were completely bizarre. These were long-lasting, slow oscillations with large amplitudes, which indicates relatively strong electrical activity. These have not been reported before.

"Unfortunately, the researchers were unable to find a strong correlation between this activity and the way the octopuses were behaving. Even when the octopuses were moving around, they could find no obvious changes in signal, despite drastic changes in motion or remaining still.

Comment: totally weird. Note my bold concerning the rarity of soft bodied organisms. We still do not know the octopus predecessors. This is still a problem 'gap'. We need more fossils.

Evolution: whale and dolphin echolocation

by David Turell @, Monday, November 20, 2023, 23:27 (367 days ago) @ David Turell

Discussing its history:

https://phys.org/news/2023-11-reveals-clues-whales-dolphins-echolocation.html

"A study published in Diversity provides new insight into how toothed whales and dolphins came to navigate the underwater world using sound waves.

"Whales and dolphins, which lack external ears, rely on a technique called echolocation to navigate and hunt in the dark. Much like shouting and listening for echoes, these animals emit high-pitched sounds that bounce off objects and reflect back at them, allowing them to map out their surroundings.

"Their skulls and soft tissues near and within the blowhole are asymmetrical, meaning that a structure on one side is larger or differently shaped than its counterpart on the other side. This "lopsidedness" enables the production of sound. At the same time, a fat-filled lower jawbone conducts sound waves to the internal ear, allowing the animals to locate where sounds are coming from (directional hearing).

***

"Xenorophus was a large creature approximately three meters long that swam the waters of Eastern North America 25–30 million years ago and likely fed on fish, sharks, sea turtles, and small marine mammals. Externally, it resembled modern dolphins but had several interlocking molar-like teeth, much like an ancestral land mammal.

"Similar to today's odontocetes, Xenorophus had asymmetry around the blowhole, though not as pronounced as its living relatives. Notably, it also had a distinct twisting and shifting of the snout several degrees to the left. Previous studies in other ancient whales (archaeocete whales) suggest that this "snout bend" may be linked to the asymmetrical placement of fat bodies in the jaw, increasing directional hearing abilities.

"However, Xenorophus took this one step further. The fat bodies in its lower jaws, which functioned like external ears in land mammals, were tilted, further exaggerating directional hearing. This bending of the snout and tilting of the fat bodies may have been similar to the asymmetrical ears of owls, which can detect the precise location of prey based on their sounds.

"The new evidence suggests that Xenorophus, with lesser pronounced asymmetry near the blowhole, may not have been as adept at producing high-pitched sounds or hearing high frequencies as living odontocetes. However, it was able to determine the location of sounds. Therefore, Xenorophus likely marked a key transition in the history of how whales and dolphins came to use echolocation.

"'While this asymmetry is seen in other ancient whales, Xenorophus displays the strongest of any whale, dolphin, or porpoise, living or extinct," said Boessenecker. "In addition, although the blowhole-focused asymmetry in today's odontocetes can be traced back to Xenorophus and other relatives, the twisting and shifting of the snout is no longer seen today. This suggests that Xenorophus is a crucial puzzle piece in understanding how whales and dolphins evolved their echolocation abilities."

"In addition, while many scientists focus on symmetry in nature, Geisler says their new study demonstrates the importance of also examining asymmetry."

Comment: humans are symmetrical, but our eyes and ears have 3-D interpretation due to being apart. Bats use echolocation as we do with our ears, but dolphins have developed an asshmetical way of doing it

Evolution: fossil skin 290 milllion years old

by David Turell @, Thursday, January 11, 2024, 17:57 (315 days ago) @ David Turell

Reptile like:

https://www.sciencealert.com/this-tiny-texture-on-rock-is-the-earliest-known-fossil-of-...

"It's just a tiny thing, smaller than a fingernail. But a rock found deep in a limestone cave in Oklahoma is extending our understanding of prehistoric skin.

"The texture preserved thereon, paleontologists have found, is the earliest known example of fossilized skin from a diverse classification of animals known as amniotes.

'Dating back 290 million years ago – a full 21 million years earlier than the previous record-holder – its wearer appears to have been a reptile, with a pebbly surface similar to the skins of crocodilians today.

"Given how important skin is, acting as a protective barrier that keeps outside contaminants out and our blood and guts in, the discovery is an important one for piecing together its evolutionary history, scientists say.

***

"The newly discovered skin fossil, however, is something really special. The skin has been carbonized in 3D, the first record we have of this from the Paleozoic. It's also the earliest known preserved skin fossil that includes, not just the outer layer, but what are almost certainly structures associated with the deeper dermis layer.

***

"Unfortunately, we don't know more about the animal to whom the skin once belonged; no associated skeleton was found. However, the non-overlapping pebbled surface resembles the skin of modern crocodilians, and the hinged regions between the scales resemble the skins of animals such as snakes and worm lizards.

"The discovery, the researchers say, shows that, even very early on, when amniotes first started to diverge, skin was present and important.

"'In particular," they write in their paper, "the presence of an epidermis with hinges and scale-like protuberances underscores the importance of this component of the amniote skin as a barrier against the harsh terrestrial environment."

***
"The skin also offers us a new tool for interpreting the subsequent development and emergence of mammalian hair follicles and avian feathers. The first mammals appear on the fossil record about 225 million years ago, and birds around 150 million years ago. So this mystery animal could be a clue about the development of our own soft fleshy skins.

"There's a lot we still don't know about how the various traits of different animal groups diverged and developed. Finding early examples of this trait is a rare and special window into the history of all this planet's strange and wonderful forms of life."

Comment: that we need a protective skin in obvious. That it looks just like a crocodile skin tells us its creation produced a perfect skin type lasting all those useful years.

Evolution: earliest eukaryote diverse fossils

by David Turell @, Sunday, January 14, 2024, 19:45 (312 days ago) @ David Turell

Back to 1.64 million years ago:

https://www.sciencedaily.com/releases/2024/01/240111162731.htm

"In a new account of exquisitely preserved microfossils, researchers at UC Santa Barbara and McGill University revealed that eukaryotic organisms had already evolved into a diverse array of forms even 1.64 billion years ago. The paper, published in the journal Papers in Paleontology, recounts an assemblage of eukaryotic fossils from an era early in the group's evolutionary history. The authors describe four new taxa, as well as evidence of several advanced characteristics already present in these early eukaryotes.

***

"The researchers were surprised by the diversity and complexity preserved in these fossils. They recorded 26 taxa, including 10 previously undescribed species. The team found indirect evidence of cytoskeletons, as well as platy structures that suggest the presence of internal vesicles in which the plates were formed -- perhaps ancestral to Golgi bodies, present in modern eukaryotic cells. Other microbes had cell walls made of bound fibers, similarly suggestive of the presence of a complex cytoskeleton.

***

"The authors also found cells with a tiny trapdoor, evidence of a degree of sophistication. Some microbes can form a cyst to wait out unfavorable environmental conditions. In order to emerge, they need to be able to etch an opening in their protective shell. Making this door is a specialized process. "If you're going to produce an enzyme that dissolves your cell wall, you need to be really careful about how you use that enzyme," Riedman said. "So in one of the earliest records of eukaryotes, we're seeing some pretty impressive levels of complexity."

***

"A big part of this effort involves understanding when different characteristics of eukaryotes first arose. For instance, the authors are quite interested to learn whether these organisms were adapted to oxygenated or anoxic environments. The former would suggest that they had an aerobic metabolism, and possibly mitochondria. Every modern eukaryote that's been found descends from ancestors that possessed mitochondria. This suggests that eukaryotes acquired the organelle very early on, and that it provided a significant advantage.

***

"'These results are a directive to go look for older material, older eukaryotes, because this is clearly not the beginning of eukaryotes on Earth," Riedman said."

Comment: eukaryotes are highly complex organisms who needed to develop an oxidated metabolism to advance. Acquiring mitochondria was a vital design step. Not by chance.

Evolution: earliest eukaryote diverse fossils

by David Turell @, Friday, January 26, 2024, 16:33 (300 days ago) @ David Turell

Another paper on the subject:

https://www.sciencemagazinedigital.org/sciencemagazine/library/item/26_january_2024/416...

"Prokaryotes evolved first, up to 3.9 billion years ago; within a few hundred million years, some of them, the cyanobacteria, began to form chains of cells, considered an advance in life’s complexity. About 2 billion years ago, much larger, single-cell eukaryotes bearing nuclei showed up. For decades, researchers thought eukaryotes didn’t form simple multicellular structures until 1 billion years after they arose, and that once chain structures evolved, more elaborate body plans—animals with organs—appeared soon after. “There was this perception that multicellularity was hard [to evolve],” Travisano says.

***

"In this week’s paper, they report that the fossils consist of strings of up to 20 cylindrical cells, with adjoining cell walls, like plants, visible under a microscope as dark rings. Several fossils had spores—with their own cell walls—suggesting the filaments had specialized reproductive structures.

“'What’s striking about these fossils is they are really rather enormous for that age, and they are multicellular,” says Jochen Brocks, an organic geochemist at Australian National University.

***

"Miao performed chemical tests on the fossils and found the structures of their organic carbon compounds were different from those in cyanobacteria fossils in these rocks. Her team concluded the filaments were most likely green algae, similar to modern eukaryotes such as Urospora wormskioldii.

***

"The new findings build on work Bengtson and colleagues reported in 2017, when they proposed that 1.6-billion-year-old fossils found in India represented red algae. In 2021, another team described “walled microfossils,” which they interpreted as a diverse set of eukaryotes, in deposits from Canada dating back 1.57 billion years. And just last month, Leigh Anne Riedman and Susannah Porter, paleontologists at the University of California, Santa Barbara, and colleagues described what they say are several eukaryotic fossils found in 1.642-billion-year-old rocks from Australia.

***

"If simple but diverse multicellular forms appeared so early, then complex multicellularity took a lot longer to evolve than most researchers had thought; the first creatures with organs and cells that did not have direct access to the outside environment didn’t appear until less than 1 billion years ago. Such a delayed timeline makes sense to Shuhai Xiao, a geobiologist and a paleobiologist at the Virginia Polytechnic Institute and State University. Truly complex eukaryotes “have multiple cells that stay together, communicate with each other, and have different sizes, shapes, and functions,” he explains. “It takes time [to make such advances].'” (my bold)

Comment: note my bold. The next major advanced was the Cambrian animals at 5.4 million years ago.

Evolution: another sudden appearance

by David Turell @, Friday, January 26, 2024, 17:27 (300 days ago) @ David Turell

Insectivore mammals are the group:

https://evolutionnews.org/2024/01/fossil-friday-the-abrupt-origin-of-insectivore-mammals/

"The fossil record discussed above clearly contradicts the predictions from molecular clock studies which suggested a much older Cretaceous origin and diversification of Eulipotyphla about a 100-70 million years ago

***

"Actually, a growing number of experts thinks that there simply are no crown group placentals at all known from the Cretaceous fossil record (Novacek et al. 1997, Wible et al. 2005, 2007, 2009; Goswami et al. 2011, Archibald & Averianov 2012, Halliday 2015, Halliday et al. 2015, Velazco et al. 2022). The consistent mismatch between molecular clock datings and empirical data from the fossil record is another striking empirical failure of Darwinian theory that should give evolutionary biologists reason to pause. The fact that it does not, shows how much this discipline is suffering from world view bias and dogmatic blinders to any conflicting evidence.

***

"We can conclude that Eulipotyphla appeared abruptly in the Paleocene about 66-61.7 million years ago, not just with a diversity of stem group taxa but already with crown group representatives. This is highly unexpected under neo-Darwinism, as we have already seen in all the examples of the other orders we discussed previously in this article series.

"We can also conclude that insectivore systematics and phylogeny are a horrible mess that perfectly illustrates the dubious nature of the whole discipline. The history of insectivore systematics proves that neither morphological nor molecular and genetic similarities correlate with a unique nested hierarchy and thus cannot be considered as lending strong support for Darwinian evolution. The one true tree of life seems to be an elusive myth rather than a scientifically established fact. This does not necessarily imply that common descent is false, but it definitely implies that one of its strongest alleged pieces of evidence does not stand up to scrutiny."

Comment: A missing fossil group is not suggested by Bechly. His criticisms of Darwinism continue.

Evolution: transitional fish

by David Turell @, Wednesday, February 07, 2024, 16:45 (288 days ago) @ David Turell

380 million years ago:

https://www.sciencealert.com/bizarre-prehistoric-predator-fish-breathed-air-had-fangs-a...

"More than 380 million years ago, a sleek, air-breathing predatory fish patrolled the rivers of central Australia.

***

"Known from at least 17 fossil specimens, Harajicadectes is the first reasonably complete bony fish found from Devonian rocks in central Australia. It has also proven to be a most unusual animal.

***

"Harajicadectes was a fish in the Tetrapodomorpha group. This group had strongly built paired fins and usually only a single pair of external nostrils.

"Tetrapodomorph fish from the Devonian period (359–419 million years ago) have long been of great interest to science. They include the forerunners of modern tetrapods – animals with backbones and limbs such as amphibians, reptiles, birds and mammals.

"For example, recent fossil discoveries show fingers and toes arose in this group.

***

"Up to 40 centimetres long, Harajicadectes is the biggest fish found in the Harajica rocks. Likely the top predator of those ancient rivers, its big mouth was lined with closely-packed sharp teeth alongside larger, widely spaced triangular fangs.

"It seems to have combined anatomical traits from different tetrapodomorph lineages via convergent evolution (when different creatures evolve similar features independently). An example of this are the patterns of bones in its skull and scales. Exactly where it sits among its closest relatives is difficult to resolve.

"The most striking and perhaps most important features are the two huge openings on the top of the skull called spiracles. These typically only appear as minute slits in most early bony fishes.

***

"Other Devonian animals that sported such spiracles were the famous elpistostegalians – freshwater tetrapodomorphs from the Northern Hemisphere such as Elpistostege and Tiktaalik.

"These animals were extremely close to the ancestry of limbed vertebrates. So, enlarged spiracles seem to have arisen independently in at least four separate lineages of Devonian fishes.

"The only living fishes with similar structures are bichirs, African ray-finned fishes that live in shallow floodplains and estuaries. It was recently confirmed they draw surface air through their spiracles to aid survival in oxygen-poor waters.

"That these structures appeared roughly simultaneously in four Devonian lineages provides a fossil "signal" for scientists attempting to reconstruct atmospheric conditions in the distant past."

Comment: Something had to be pre-Tiktaalik. This fills another small gap in the fossil record.

Evolution: review of earliest life evidence

by David Turell @, Saturday, February 10, 2024, 16:40 (285 days ago) @ David Turell

No more than 700 million years after Ear formation:

https://bigthink.com/starts-with-a-bang/life-sprang-forth-earth/?utm_campaign=swab&...

"By the time the Earth was less than 1 billion years old, life already had the ability to transcribe and translate information between DNA, RNA, and proteins, and these mechanisms exist in all descended organisms today. Whether life arose multiple times is unknown, but it is generally accepted that all life forms present today have indeed descended from a single population.

"Despite the fact that geological processes can often obscure the fossil record beyond a few hundred million years, we have been able to trace back the origin of life extraordinarily far. Microbial fossils have been found in sandstone dating to 3.5 billion years ago. Graphite, found deposited in metamorphosed sedimentary rock, has been traced back to having biogenic origins, and dates back to 3.8 billion years ago. There are very, very few pieces of the geological record that date back before this time, but we can be fairly certain — based on the most direct evidence available — that life was already thriving on planet Earth some 3.8 billion years ago. That’s impressive for a planet that only formed 4.5 billion years ago!

"At even earlier, more extreme times, the deposits of certain crystals in rocks may have originated (this is more hotly debated) from biological processes, suggesting that Earth was teeming with life as early as 4.3 to 4.4 billion years ago: as soon as 100-200 million years after the Earth and Moon formed. If these zircon crystals, which have inclusions within them that may indicate the metamorphosed remains of organic material, really do come from life processes, the implications are astounding. It would mean that, even through the heavy bombardment period, life on Earth existed: perhaps almost for as long as planet Earth itself.

***

"While Venus and Mars may have had similar chances, radical changes to Venus’ atmosphere rendered it a searing hothouse world after as little as merely 200-300 million years, while the death of the Martian magnetic field caused its atmosphere to be stripped away, rendering it solid and frozen after approximately 1-1.5 billion years. While asteroid strikes may have subsequently sent Earth-based life off-world, where it may yet travel all throughout the Solar System and even the Milky Way galaxy, all the evidence we have suggests that planet Earth, right here, is where the biological activity that Earth is home to got its start.

"It took somewhere between 9.4-to-10.0 billion years after the Big Bang for planet Earth to go from a barren, lifeless state to one that was teeming with life."

Comment: keeping to a purposeful philosophy, it all shows a designed planning.

Evolution: genetics in high altitude humans

by David Turell @, Saturday, February 10, 2024, 20:06 (285 days ago) @ David Turell

Tibetan genes not the same as Andean genes:

https://medicalxpress.com/news/2024-02-harnessing-human-evolution-advance-precision.html

"...reveals that a gene variant in some Andean people is associated with reduced red blood cell count at high altitudes, enabling them to safely live high in the mountains in low-oxygen conditions.

***

"Her previous research showed that many mountain-dwelling Tibetans exposed to low-oxygen situations are born with innate mechanisms that protect them from poor outcomes at high altitude, including the overproduction of red blood cells. Part of this is due to changes in the regulation of the EPAS1 gene, which lowers hemoglobin concentrations by regulating the pathway that responds to changing oxygen levels. Advances in genetics have shown that modern Tibetans received this genetic advantage from their ancestors who mixed with archaic humans living in Asia tens of thousands of years ago—a unique evolutionary history confined to this population.

"For her latest research, Dr. Simonson, who is also the John B. West Endowed Chair in Respiratory Physiology and associate professor in the Division of Pulmonary, Critical Care, Sleep Medicine & Physiology at UC San Diego School of Medicine, zoomed in on the EPAS1 region of the genome. She and her team focused on a mutation in the gene that is present in some people living in the Andes but is absent in all other human populations. When they scanned whole Andean genomes, they found a pattern surrounding this variant suggesting that the genetic change, which alters only a single amino acid in the protein product, happened by chance, relatively recently (from 9,000 to 13,000 years ago), and spread very quickly through hundreds of generations within the Andean population.

"Similar to Tibetans, the EPAS1 gene is associated with lower red blood cell count in Andeans who possess it. However, the researchers were surprised to find that the variant works in a completely different way from the Tibetan version of the gene; rather than regulating its levels, the Andean variant changes the genetic makeup of the protein, altering the DNA in every single cell.

"'Tibetans have, in general, an average lower hemoglobin concentration, and their physiology deals with low oxygen in a way that doesn't increase their red blood cells to excessively high levels. Now we have the first signs of evidence that Andeans are also going down that path, involving the same gene, but with a protein-coding change. Evolution has worked in these two populations, on the same gene, but in different ways," said Simonson.

"This study exemplifies a current approach in research that connects genetic targets of natural selection with complex disease genes—understanding, for example, how natural genetic variation contributes to adaptive and maladaptive responses to low oxygen, as this study reveals."

Comment: two different ways for different mutations at work. Just two examples. Would other high-altitude folks have different results? This shows human still adapt as necessary, but I think true speciation is over.

Evolution: studies of multicellularity origin

by David Turell @, Wednesday, February 21, 2024, 18:07 (274 days ago) @ David Turell

From an interview:

https://www.quantamagazine.org/a-multitalented-scientist-seeks-the-origins-of-multicell...

"I provided direct experimental evidence for something that had long been hypothesized, but not previously shown. Namely, that just as whole animals can be subject to natural selection, where the fit survives better than the less fit, individual germ cells within a developing animal can do the same thing.

"Germ cells are fascinating because they are a special novelty of multicellular organisms. Almost every major successful multicellular life form reproduces with germ cells. They are how genes get passed down from one generation to another. They are what provides the ability for cells to stick together, or to form a big multicellular conglomerate like a banana or a person.

***

"Much of my subsequent career has been guided by wanting to understand how a single cell, the fertilized egg, creates a complex multicellular adult made of millions of cells. I’m trying to figure out how the different types of cells in organisms first arose.

"Among the questions I’m asking is: How do they know what to do? What genes do they use to do this? And since the first life on Earth was single-celled, how did multicellular genes and cell types evolve in the first place?

***

"First, showing that cell-cell signaling is not an unusual way for animals to generate embryonic germ cells — that is, cells that will become eggs and sperm. The idea that dominated textbooks for most of the 20th century was that in insects and most other animals, a “germ plasm” in the egg established a distinct lineage of germ cells very early in development. But we showed that in crickets, body cells are induced to change into germ cells by signals from the surrounding tissues. That’s what happens in mice and other mammals, too, but it was thought to be a novel mechanism that appeared rarely in evolution.

"Second, discovering in 2020 that the long-lost relatives of oskar, a gene very famous for its essential role in insect reproduction, were actually from bacteria, not just from earlier animals. This gene evolved by fusion of bacterial genome sequences with animal genome sequences. It suggests that the forerunners to oskar had very different functions, possibly in the development of the nervous system, and that further study of how it evolved its new purpose could be highly informative." (my bold)

Comment: bacteria are at work and helpful in every stage of life.

Evolution: explosion of snakes

by David Turell @, Friday, February 23, 2024, 16:16 (272 days ago) @ David Turell

A dramatic evolution of thousands of species of snakes since dinosaurs went extinct:

https://www.livescience.com/animals/snakes/snakes-are-built-to-evolve-at-incredible-spe...

"Snakes have a supercharged evolutionary clock that enables them to adapt at far faster rates than other reptiles, scientists have discovered. This ability has helped them become evolutionary "winners" and spread across the planet.

"'Snakes are like the Big Bang 'singularity' in cosmology — a dramatic expansion of diversity in species and their ecologies, linked to some event that might have occurred early in the evolutionary history of snakes," lead author Pascal Title,

***

"The scientists looked at squamates, the order of reptiles that includes snakes and lizards and includes over 11,000 species. In this group, snakes, in particular, are widely diverse — the roughly 4,000 known snake species vary from venomous sea snakes, giant constrictors and hooded cobras to tiny threadsnakes that burrow to feed on ants and termites.

***

"Their findings suggest that snakes underwent several evolutionary explosions and evolved three times faster than lizards, in terms of diversity. After likely first emerging about 128 million years ago, there was a huge burst at some point between then and 70 million years ago, during the Cretaceous period (145 million to 66 million years ago), and another major pulse after the dinosaurs went extinct at the end of the Cretaceous.

"'Compared to lizards, they have changed relatively rapidly, and they've continued to do so through time," Rabosky said. "So we would also say that the continued 'evolutionary explosion' of snakes is still ongoing today and appears partly driven by the fact that the rate of evolution — their 'evolutionary clock' so to speak — is just ticking a lot faster than many other groups of animals. This fast-ticking-evolutionary-clock is really important because it lets snakes evolve new traits quickly that can take advantage of opportunities that come up."

"Snakes' evolutionary flexibility enables them to change their body shape and diets "very quickly," he said. The initial "singularity" that led to snakes' success appears to have started with them developing limbless bodies, flexible skulls and advanced chemical-detection systems.

"These changes enabled them to target a huge array of prey, providing the framework for individual species to develop and specialize. Previous research published in 2021 shows the diversity in their diets exploded after the dinosaurs went extinct, with snakes quickly evolving new adaptations to take advantage of the new world they found themselves in — a dinosaur-less world in which mammals were starting to gain a foothold.

"But why snakes ended up with a fast evolutionary clock in the first place is still a mystery. "This is the big question for us," Rabosky said. "We can’t really explain this yet."

Comment: every species evolving since dinosaurs have created ecosystems into which there is a place for snakes. They are certainly a unique form of vertebrate, going from legged to legless as if it shows evolution going backwards. Loss of locomotion resulted in an amazing set of changes to make up for it. Not by natural selection, but by design.

Evolution: explosion of birds

by David Turell @, Friday, February 23, 2024, 17:23 (272 days ago) @ David Turell

Bechly again presenting the Big Bang of birds:

https://evolutionnews.org/2024/02/fossil-friday-the-big-bang-of-tertiary-birds-and-a-ph...

"Indeed, modern crown group birds appear and diversify so abruptly that it has been called a “Big Bang of Tertiary birds” by some paleo-ornithologists (Feduccia 1995, 2003a, 2014, Ksepka et al. 2017). Some of their colleagues did not like such an explosive view for obvious reasons (e.g. Dyke 2003, van Tuinen et al. 2003), but Alan Feduccia addressed and rebutted all critics (Feduccia 2003b), and emphasized that “a rapid, explosive Tertiary radiation best explains why resolving phylogenetic relationships of modern orders remains intractable.”

***

"Not just that rocks and clocks conflicted, but phylogenomic studies increasingly supported the Big Bang of Tertiary birds so that now molecular trees conflicted with molecular clocks. The Big Bang view was most strongly confirmed by the seminal study of Jarvis et al. (2014), a genome scale phylogenetic analysis by more than 100 authors (!), who found that “even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extinction event about 66 million years ago.” This result was widely reported by the popular science media with sensational headlines about the mapping of the “‘Big Bang’ of Bird Evolution” (AMNH 2014, Duke University 2014, BGI Shenzen 2014, Smithsonian Insider 2014), or as Time Magazine titled “There was a Big Bang for Birds” (Kluger 2014), or “Rapid bird evolution after the age of dinosaurs unprecedented, study confirms” (University of Sydney 2014). Casey Luskin (2014) then also reported for Evolution News how this “massive genetic study confirms birds arose in Big Bang-type of explosion.”

***

"We can conclude that fossil and molecular data conflict in terms of the question when and how quickly modern birds originated, and molecular and morphological data conflict in terms of the reconstruction of the assumed bird tree of life. Why is there such a stark conflict, when Darwinism would naturally predict that different lines of evidence should converge towards one true evolutionary history of birds. Again, a quite obvious explanation could be that there just was no such history, or at least that totally different causal mechanism were at work.

"The most important take home message from this article is this: in spite of the new study by Wu et al. (2024), there is overwhelming evidence, recognized by the vast majority of mainstream experts, that there was an explosive diversification of modern birds (Neoaves) in the Lower Tertiary (Paleogene). There was an abrupt origin, a burst of biological creativity with a genuine Big Bang of modern birds, which is best explained by an infusion of new information from an intelligent agent outside the system. What do evolutionary biologists suggest instead? They say that the global collapse of forest ecosystems after the end-Cretaceous impact killed off all arboreal bird lineages and the remaining ground-dwelling ancestors of modern birds experienced a rapid diversification afterwards (Field et al. 2018). Yet another description of the problem, rather than an explanation, which seems to be a recurring theme in evolutionary biology." (my bold)

Comment: Bechly's approach is that there are many Big Bangs in evolution, based on the fossil record. The bold is ehv whole point of intelligent design theory.

Evolution: dinosaurs to birds

by David Turell @, Sunday, February 25, 2024, 15:59 (270 days ago) @ David Turell

Only one species based on feathers:

https://www.sciencealert.com/scientists-discover-an-ancient-pattern-hidden-in-the-feath...

"According to an analysis of hundreds of preserved bird specimens from museum collections around the globe, there's a specific set of feather rules behind the power of flight.

"These newly discovered rules allow scientists to better predict which dinosaurs could fly too.

"'Theropod dinosaurs, including birds, are one of the most successful vertebrate lineages on our planet," says Field Museum of Natural History paleontologist Jingmai O'Connor. "One of the reasons that they're so successful is their flight. One of the other reasons is probably their feathers, because there's such versatile structures."

"Their new data could settle some old paleontological debates over whether flight evolved in dinosaurs on more than one occasion.

"Examining wing feathers of 346 different species of birds from museums around the world, Field Museum of Natural History ornithologist Yosef Kiat discovered an interesting trend. From the tiniest hummingbird to the fiercest eagle, all flying birds had 9 to 11 asymmetrical flight feathers called primaries.

***

"'It's really surprising, that with so many styles of flight we can find in modern birds, they all share this trait of having between nine and eleven primary feathers," says Kiat. "And I was surprised that no one seems to have found this before."

"The number of primaries, along with feather symmetry and wing proportions accurately reflect the flight capacity of all known modern birds.

"Looking at fossils up to 160-million-years-old the researchers identified which bird ancestors shared these traits, and were therefore likely to have been able to fly. Out of 35 different species of extinct birds, Kiat and O'Conner identified some that had the right feathers for flight, and others that did not.

***

"'It was only recently that scientists realized that birds are not the only flying dinosaurs," explains O'Connor.

***

"'Our results here seem to suggest that flight only evolved once in dinosaurs," states O'Connor.

***

"Kiat and O'Connor point out claims suggesting flight evolved multiple times in dinosaurs were based on skeletal data alone.

"'We argue it is impossible to assess flight potential in non-avian pennaraptorans without examining the structure of the feathers forming the wing itself," they write in their paper.

"They believe we're still missing the earliest stages of wing evolution from our fossil records, so this is unlikely to be the final word in the debate."

Comment: this seems to solidify the story. Lots of feathered dinosaurs but only one bird ancestor.

Evolution: early strange forest

by David Turell @, Sunday, March 17, 2024, 14:10 (249 days ago) @ David Turell

With fascinating illustrations:

https://www.sciencealert.com/earths-oldest-fossilized-forest-has-been-hiding-its-bizarr...

"The highest sea cliffs in England have been hiding the oldest fossilized forest yet found on planet Earth. The long-lost ecosystem's palm-like trees, called Calamophytons, are 390 million years old.

***

"In southwest England, the red sandstone rock face where scientists found the imprints of logs, roots, and twigs was once considered "barren of trace fossils".

***

"Animals and primitive plants alike were quick to make use of the new environment. The first trees to colonize the supercontinents were unlike anything you'd see today. Initially, they didn't have roots, leaves, spores, seeds, or any vascular system to transport water and nutrients, forcing them to stick close to coastlines and rivers.

"The Calamophyton trees discovered on the Somerset coastline near Minehead had evolved roots and strands of vascular tissue in their stems, but they were only two to four meters high, and their trunks were thin and hollow.

"Others of their kind have previously been discovered in fossil form in Germany, New York, and China. When the Gondwana supercontinent existed, Germany used to be connected to this very part of England, so it makes sense that they'd share vegetation.

***

"...some of the fossilized trees are preserved exactly where they grew or fell, giving scientists a first glimpse into the layout of the forest ecosystem. Unlike the fossil forest found in upstate New York, the trees in this ancient floodplain are shorter and appear to have grown close together, tightly packed in.

"'This was a pretty weird forest," says geologist Neil Davies from the University of Cambridge.

"'There wasn't any undergrowth to speak of and grass hadn't yet appeared, but there were lots of twigs dropped by these densely-packed trees, which had a big effect on the landscape."

"Calamophyton trees had no leaves, but they were covered in hundreds of little twigs that were regularly shed. In fact, in one lifetime, Calamophyton trees may have shed as many as 800 branches.

"That one tree's trash was likely another plant's treasure. As the woody debris accumulated on the forest floor, Earth's soil was infused with its first reserves of organic matter.

"All those tens of millions of years ago, the forest ground would have been covered in "exceptionally abundant plant debris", write geologists from Cambridge and Cardiff.

"Surrounded by a network of rivers and channels, seasonal floods would have been common. The trees probably evolved deeper roots to survive bouts of water scarcity.

"These roots, in turn, would have stabilized and sculpted the land to form the slopes of hills, river bars, and channels for other plants to then colonize.

"As water washed through the floodplain, it deposited mud in ripples around the vegetation in ways that were later fossilized, preserving the plants and their position for millions of years.

"'The Devonian period fundamentally changed life on Earth," says Davies.

"'It also changed how water and land interacted with each other, since trees and other plants helped stabilize sediment through their root systems, but little is known about the very earliest forests."

"The Devonian is sometimes called the 'age of fishes', but given how much plants like Calamophyton appear to have altered Earth's landscape, the time could just as well be known as the age of trees."

Comment: This is a marvelous example of how new life on Earth evolved the Earth itself adding organic matter to soil and making soil itself from decomposed rock. Do not miss seeing the illustrations!!

Evolution: giant armored species before crocodiles

by David Turell @, Tuesday, March 19, 2024, 17:28 (247 days ago) @ David Turell

Literally like tanks and preceding dinosaurs:

https://www.sciencedaily.com/releases/2024/03/240318164517.htm

"Dinosaurs get all the glory. But aetosaurs, a heavily armored cousin of modern crocodiles, ruled the world before dinosaurs did. These tanks of the Triassic came in a variety of shapes and sizes before going extinct around 200 million years ago. Today, their fossils are found on every continent except Antarctica and Australia.

"Scientists use the bony plates that make up aetosaur armor to identify different species and usually don't have many fossil skeletons to work with. But a new study led by researchers at The University of Texas at Austin centers on an aetosaur suit of armor that has most of its major parts intact.

"The suit -- called a carapace -- is about 70% complete and covers each major region of the body.

***

"Reyes and his collaborators used the armor to identify the specimen as a new aetosaur species -- which they named Garzapelta muelleri. The name "Garza" recognizes Garza County in northwest Texas, where the aetosaur was found, and "Pelta" is Latin for shield, a nod to aetosaurs' heavily fortified body. The species name "muelleri" honors the paleontologist who originally discovered it, Bill Mueller.

"Garzapelta lived about 215 million years ago and resembled a modern American crocodile -- but with much more armor.

"'Take a crocodile from modern day, and turn it into an armadillo," said Reyes.

"The bony plates that covered Garzapelta and other aetosaurs are called osteoderms. They were embedded directly in the skin and formed a suit of armor by fitting together like a mosaic. In addition to having a body covered in bony plates, Garzapelta's sides were flanked by curved spikes that would have offered another layer of protection from predators. Although crocodiles today are carnivores, scientists think that aetosaurs were primarily omnivorous.

***

"Garzapelta is part of the Texas Tech University fossil collections. It spent most of the past 30 years on a shelf before Reyes encountered it during a visit. Bill Parker, an aetosaur expert and park paleontologist at Petrified Forest National Park who was not part of the research, said that university and museum collections are a critical part of making this type of research possible."

Comment: viewed from dhw's perspective, some horrible enemies had to exist to force this guy to require this degree of plate armor to survive.

Evolution: mummies with parasites

by David Turell @, Thursday, April 04, 2024, 21:37 (231 days ago) @ David Turell

A huge study:

https://www.scientificamerican.com/article/ancient-egyptian-mummies-reveal-what-disease...

"Ancient Egypt—a civilization that was one of the most powerful the world has ever seen and which lasted for nearly 3,000 years—was among the first to mummify its dead, providing us a window into its people’s culture, language and politics, as well as their health. Now a new study has uncovered intimate details of the disease landscape that set this civilization apart from others of its time, including a surprising role played by the society’s lifeblood: the Nile River.

***

"...anthropologist Piers D. Mitchell analyzed data from 31 studies of mummies from Egypt and neighboring Nubia—another early civilization, dating back to 2000 B.C.E., in what is today southern Egypt and Sudan. In one study, 65 percent of mummies had parasitic worms. In another, 40 percent had head lice. Of the mummies that were tested for Plasmodium falciparum malaria (the most dangerous and deadly form of the illness), 22 percent had it. And based on two other studies, Mitchell estimates that about 10 percent had leishmaniasis, a deadly parasitic disease that causes internal organs to enlarge. “Egypt and Nubia were heavily burdened by the kind of parasites that are likely to kill you or cause a chronic burden of illness,” Mitchell says.

"While infectious maladies would likely have been common among any civilization millennia before vaccinations, treated water or antibiotics, the Nile River played a unique role in the types of illnesses that took hold in ancient Egypt. Despite the region’s arid conditions, vector-borne diseases such as malaria and leishmaniasis were common because mosquitoes bred in the marshlands of the river and sand flies on the drier savanna, Mitchell says.

"By contrast, some sanitation-related afflictions, such as whipworm and roundworm—both of which are spread through feces and were common in other ancient societies—were conspicuously absent in ancient Egypt. Mitchell attributes this to the Nile’s reliable annual flooding and the fertile silt this provided, which would have reduced the need to use animal and human dung to fertilize crops. Aquatic snails in the river did carry some parasites, though. And the cult status of cats in ancient Egypt may have led to the spread of the parasite toxoplasmosis in humans who came into close contact with cats that were being mummified or used in religious offerings.

"Many of the studies Mitchell reviewed used CT scans to analyze diseased tissue for parasites such as guinea worms, which could have formed cysts in the body. When soft tissue was present in mummified specimens, it was possible to use fragmented DNA to identify malaria and leishmaniasis. Similarly, a DNA analysis of muscle tissue was used in one study to detect toxoplasmosis. When working with specimens that had mummified naturally, researchers looked for intestinal parasites within the corpse. But in wealthier individuals, who were embalmed and properly mummified, researchers had to search out intestinal organs in canopic jars—containers the ancient Egyptians used to store organs separately after the mummification process.

***

"Irrespective of social class, anyone using infected water sources is susceptible to infection,” says Ivy Hui-Yuan Yeh, a biological anthropologist at Nanyang Technological University in Singapore, who was not involved in the study. Yeh says this explains why even mummies from among the nobility were heavily burdened by disease. The young pharaoh Tutankhamun, for example, who lived from around 1341–1323 B.C.E., was infected with two different malaria strains (although scientists don’t know if either caused his death).

***

"The disease burden in ancient Egypt and Nubia would have had widespread effects on society, says Marissa Ledger, a medical microbiology resident and biological anthropologist at McMaster University in Ontario, who was also not involved in the study. “Things like anemia [caused by malaria] make people tired. They also impact your ability to think and even how far you can walk in a day,” she says. “When you have such a high percentage of people in a civilization infected with chronic diseases like this, it has a huge impact on society functioning as a whole.'”

Comment: Thank goodness we know how to protect ourselves now. This was a major part of our civilized evolution. Big brains sure help.

Evolution: dinosaurs to birds; Bechly redux

by David Turell @, Friday, September 13, 2024, 20:06 (69 days ago) @ David Turell

Bechly's current comment:

https://evolutionnews.org/2024/09/fossil-friday-more-evidence-that-feathered-dinosaurs-...

"...in one of my recent Fossil Friday articles (Bechly 2024) I elaborated on the neoflightless hypothesis by paleo-ornithologist Alan Feduccia, who convincingly argues that all those feathered bipedal “dinosaurs” are in fact not related to theropod dinosaurs at all but rather represent secondarily flightless birds. I also discussed new evidence that strongly supports this view. Indeed, Agnolin et al. (2019) already commented in their study on the dinosaur-bird transition:

"In a ground-breaking proposal, Xu et al. (2011) hypothesized that Archaeopteryx was more nearly related to deinonychosaurians than to birds and that deinonychosaurs become secondarily flightless, a hypothesis previously envisaged by Paul (2002). This hypothesis was supported by a variety of more recent analyses.

***

"Just about a decade ago, Godefroit et al. (2013b) described a new supposed theropod dinosaur from the Middle-Late Jurassic Tiaojishan Formation of Liaoning in China. With an estimated age of 160 million years it is 10 million years older than the famous Archaeopteryx. They named the new species Eosinopteryx brevipenna, because of its reduced plumage. The single known specimen (an artist’s depiction of the living animal is above, or see here for the fossil) represents a very well-preserved fossil and almost complete skeleton, which allowed scientists to identify the new taxon as a close relative of the feathered dinosaur Anchiornis.

"But this generated a problem: the new dinosaur appeared to be nested deeply in the tree of feathered dinosaurs, so that its reduced plumage cannot be a primitive state but has to be a secondary reduction from a more complete set of feathers. Furthermore, the bone structures of the shoulder articulation showed that the animal was not capable of flapping its arms or wings. This is even more perplexing, as this case of reduced flight adaptations predates the famous missing link Archaeopteryx. Consequently, the press release to the new study announced that this fossil “challenges bird evolution theory” and suggested “that the origin of flight was much more complex than previously thought.” The lead author, Dr. Gareth Dyke from the University of Southampton, is quoted with this remarkable admission: “This discovery sheds further doubt on the theory that the famous fossil Archaeopteryx — or “first bird” as it is sometimes referred to — was pivotal in the evolution of modern birds.”

***

"But these studies partly disagreed on certain crucial issues, such as the question of whether the shorter tail in Eosinopteryx is complete and diagnostic (Pei et al. 2017) or not (Hu et al. 2018, Agnolin et al. 2019). Moreover, other experts had recorded further diagnostic differences between the skeletons of two taxa, such as anteriorly convex pubic shafts that are present in Anchiornis but absent in Eosinopteryx (Foth & Rauhut 2017), or the length and shape of the prefrontal and maxillary processes (Guo et al. 2018). Also the cladistic studies by Lefèvre et al. (2014), Guo et al. (2018), Hu et al. (2018), and Pei et al. (2020) did not recover Eosinopteryx as closest relative of Anchiornis, or even rejected the monophyly of Anchiornithidae. One could almost get the impression that the desire to explain away inconvenient results may have guided the interpretations of those scientists, who denied the distinctness of Eosinopteryx.

"There are clearly open questions and it definitely looks like the common dino-to-bird narrative has been massively oversold to the public and represents a theory with numerous holes and problems."

Comment: this article calls into question dhw's assertion that 696 dinosaur species produced four bird types.

Evolution: earthworm DNA is weird

by David Turell @, Sunday, September 15, 2024, 16:38 (67 days ago) @ David Turell

Not like any other:

https://www.sciencealert.com/a-profound-mystery-gave-earthworms-the-most-chaotic-genome...

"Back around when worms wriggled out of saltwater and into freshwater, they experienced a cataclysmic rearrangement of their genetic material.

"This event ripped once functioning genes asunder, including some of those involved in critical cell division processes, leaving earthworms, leeches, and their other clitellate relatives with the most scrambled genomes known.

"'Everything broke and then rearranged completely randomly," Rosa Fernández, from Spain's Institute of Evolutionary Biology (CSIC-UPF), told Christie Wilcox at Science. "I made my team repeat the analysis a thousand times."

"Three groups of researchers have now independently reached this same conclusion, upending a long held assumption that there's a certain level of genetic stability required for animal species to avoid extinction.

"Evolutionary biologist Carlos Vargas-Chávez, also from CSIC-UPF, and colleagues discovered gene loss is about 25 percent higher in the line of worms that became clitellata, compared to their other relatives.

"They suspect the worm's genomes scrambled in response to shifts into new habitats, but have yet to determine which came first, the worm's ventures into freshwater and land or their genes' adventures into new positions in their genetic molecules (chromosomes).

"'While the timing of this genomic rearrangement remains unclear, we argue that the genomic hallmarks observed in clitellates are highly unlikely to have arisen via… rearrangements over time," the researchers explain in their paper.

***

"Most bilaterians, animals like us that have a mirror image left and right side, were thought to have highly conserved sections of chromosomes. This stability is vital for properly aligning the two strands of DNA that form them, when they're pulled apart and then paired off with one strand from each parent during reproduction.

"Genomes from sponges to monkeys have these long ribbons of genes that stay together in a specific order across distantly related species, conserved for hundreds of millions of years.

"These ribbons may move around to some extent, but their sequences within these sections remain relatively intact. But not in leeches and earthworms.

"'Overall, the ancient bilaterian genome architecture has been completely lost within the clitellates," a second team, led by evolutionary genomicist Thomas Lewin from Taiwan's Biodiversity Research Center, found.

***

"'One outstanding question is how this profound genome reshaping event did not result in extinction," write Vargas-Chávez and colleagues.

"They found ancestral marine worm genomes do not seem to be organized in compartments, and so are "much more floppy" than in other animals.

"This "may have resulted in a high resilience to the deep genome reshaping occurring after chromosome scrambling," the team concludes. It also suggests such dramatic genetic rearrangements are likely to be ongoing in these species."

Comment: it appears descent with modification is not required in every genome (step side Darwin) and reminds us it is better to use genetic studies to discover relationships than phenotypic ones.

Evolution: transitional fish, Tiktaalik new findings

by David Turell @, Sunday, April 07, 2024, 15:42 (228 days ago) @ David Turell

New technique:

https://www.sciencedaily.com/releases/2024/04/240405231833.htm

"Before the evolution of legs from fins, the axial skeleton -- including the bones of the head, neck, back and ribs -- was already going through changes that would eventually help our ancestors support their bodies to walk on land. A research team including a Penn State biologist completed a new reconstruction of the skeleton of Tiktaalik, the 375-million-year-old fossil fish that is one of the closest relatives to limbed vertebrates. The new reconstruction shows that the fish's ribs likely attached to its pelvis, an innovation thought to be crucial to supporting the body and for the eventual evolution of walking.

***

"The pelvic fins of fish are evolutionarily related to hind limbs in tetrapods -- four-limbed vertebrates, including humans. In fish, the pelvic fins and bones of the pelvic girdle are relatively small and float freely in the body. For the evolution of walking, the researchers explained, the hind limbs and pelvis became much larger and formed a connection to the vertebral column as a way of bracing the forces related to supporting the body.

"'Tiktaalik is remarkable because it gives us glimpses into this major evolutionary transition," Stewart said. "Across its whole skeleton, we see a combination of traits that are typical of fish and life in water as well as traits that are seen in land-dwelling animals."

***

"'This reconstruction shows, for the first-time, how it all fit together and gives us clues about how walking might have first evolved."

"The researchers explained that, unlike our own hips where our bones fit tightly together, the connection between the pelvis and axial skeleton of Tiktaalik was likely a soft-tissue connection made of ligaments.

""Tiktaalik had specialized ribs that would have connected to the pelvis by a ligament," Stewart said. "It's astonishing really. This creature has so many traits -- large pair of hind appendages, large pelvis, and connection between the pelvis and axial skeleton -- that were key to the origin of walking. And while Tiktaalik probably wasn't walking across land, it was definitely doing something new. This was a fish that could likely prop itself up and push with its hind fin.'"

Comment: the authors of this article see the purpose in evolution as they describe the advances related to walking

Evolution: chance and random mutations

by David Turell @, Wednesday, May 08, 2024, 22:52 (197 days ago) @ David Turell

Any chance for coherence?:

https://www.scientificamerican.com/article/the-mathematical-case-for-monkeys-producing-...

"In one of the most bizarre research experiments in the history of mathematics, researchers at the University of Plymouth in England gave six Celebes crested macaques at the nearby Paignton Zoo a keyboard. From May 1 to June 22, 2002, the animals let off steam by banging at the keys. The letters they typed were transmitted to the Internet. The scientists’ aim was to test the “infinite monkey theorem”: the idea that a monkey typing randomly on a keyboard will, after an infinite amount of time, produce every conceivable text—including the complete works of Shakespeare.

"But—surprise, surprise—the primates’ poetry fell short. After more than seven weeks, the macaques produced only one five-page document, consisting almost entirely of the letter “S.” The researchers nonetheless released the result as a book.

"In defense of Elmo, Gum, Heather, Holly, Mistletoe and Rowan—the six macaques who participated in this experiment—they did not have an infinite amount of time for their work. Still, the result was sobering. It seems highly questionable that these monkeys would have produced Hamlet or the “Scottish play.”

"Although the study in no way disproved the infinite monkey theorem, it showed that monkeys are not necessarily ideal candidates for generating random content in the way the theorem’s creator had assumed. The infinite monkey theorem owes its name to mathematician Émile Borel, who used the animals metaphorically to illustrate his theory of probability in 1913. The ideas behind the theorem are much older, however.

***

"In 2024 data analyst Ergon Cugler de Moraes Silva of the University of São Paulo in Brazil wanted to find out how long it would take, on average, to actually obtain a work by Shakespeare by chance. Instead of monkeys, he programmed a character generator. As described in a preprint paper, his technique was designed to rapidly spit out several hundred pseudorandom spaces, punctuation and letters (in both upper and lower case) each second until a famous sentence from Hamlet appeared: “To be, or not to be, that is the Question” (including the spaces).

"Cugler proceeded in several steps. First, he examined how long it takes on average to find “T” in isolation. He repeated that procedure 10 times and then recorded the average time and number of characters required to generate the desired output. Then he repeated this procedure to determine how long it would take to randomly generate “To” and then did so again for “To” followed by a space, and so forth.

***

"Cugler’s calculation showed that it would take an extreme amount of patience for “To be, or not to be, that is the Question” to appear: about 2.68 x 1069 characters would have to be generated, which would take about 2.95 x 1066 seconds, or 9.35 x 1058 years.

"Since our universe is estimated to be 13.8 billion years old, we would have to wait nearly 7 x 1048 times as long as the time that has passed between the big bang and today. And all this just to produce a single sentence from Hamlet by chance. In this respect, Cicero was right: it is very unlikely that chance will produce even a single readable verse of a poem—or any other text—after a finite amount of time."

Comment: Darwin's chance mutation theory is a dead end, as shown here mathematically.

Evolution: origin of sympathetic nervous system

by David Turell @, Thursday, May 09, 2024, 15:57 (196 days ago) @ David Turell
edited by David Turell, Thursday, May 09, 2024, 16:02

It runs our organs:

https://www.sciencenews.org/article/lampreys-nervous-system-evolution-cells

"With terrifyingly sharp teeth arranged around a circular mouth, lampreys look about as primitive a vertebrate as you could imagine. But a new study finds that the animals have a surprising similarity to people: Lampreys have the nerve cells responsible for the “fight or flight” response. The finding challenges the idea that this part of the nervous system emerged later in evolutionary history, and it puts lampreys closer to complex vertebrates — like humans.

***

"Sea lampreys (Petromyzon marinus) belong to a group of fish called jawless vertebrates, which scientists thought lacked nervous system characteristics seen in jawed vertebrates, such as the sympathetic nervous system. This system is what’s behind the “fight or flight” response, and it activates the body by releasing hormones to control body temperature and cardiovascular function.

***

"The team used a technique that tags and lights up specific mRNA in individual cells of lamprey embryos. That allowed the researchers to look at three or four genetic factors associated with sympathetic neurons simultaneously. A cluster of cells lining the heart and the trunk of the embryonic lampreys had these genetic factors, indicating that the cells were the sympathetic neurons seen in other vertebrates, the team reports April 17 in Nature.

"Next, the team tracked where these cells originated by injecting a dye to label cells of the neural crest, a patch of stem cells that migrate during development and give rise to cells of the peripheral nervous system. The lamprey’s sympathetic neurons lit up with the dye, showing that the cells came from the neural crest, just like they do in more complex vertebrates.

"But there were also key differences. Compared with other vertebrates, the lamprey’s sympathetic nervous system formed much later in development and the clusters of cells were smaller. Previous studies may have missed these cells by looking for them at the wrong time during embryo development. So even though the sympathetic system is present, it’s rudimentary nonetheless, Bronner says. “It’s very simplified compared to what it would be in mammals.”

"The findings suggest that the sympathetic nervous system was not an innovation of jawed vertebrates, but rather that the blueprint for it has been around since even before lampreys diverged from the main vertebrate line about half a billion years ago, says Shreyas Suryanarayana, a neuroscientist at Duke University who was not involved with the study. (my bold)

“'As you look deeper, it becomes clear that the basic building blocks of these complex systems present in humans are, in fact, very old,” Suryanarayana says. In more complex vertebrates, this system then diversified, expanded and grew larger, he says.

Comment: note my bold. This article shows that what develops in evolution is not a sudden appearance of a new innovation, but a step based upon much older preparatory developments. Viewing evolution from a purposeful point of view, this makes perfect sense. Bake in steps to the future early on. This is what a designer would do. This answers dhw's complaint that God made 99.9% of unnecessary organisms just to throw them away. They were all part of a purposeful development, step-by-step to a goal, or as in evolution steps to many, many goals.

Evolution: monkey works for the theory

by David Turell @, Friday, May 24, 2024, 16:58 (181 days ago) @ David Turell

Dispersal of dinosaurs just like the monkeys. Same dinosaurs in North America and Africa when separated by huge oceans:

https://evolutionnews.org/2024/05/fossil-friday-did-giant-dinosaurs-swim-across-oceans/

"I discussed the unlikelihood of trans-oceanic dispersal for terrestrial animals, which is implied by certain evolutionary hypotheses, for example about the origin of New World monkeys. This Fossil Friday we will add another absurd case, which made headlines after the highly unexpected discovery of duckbill dinosaurs in Africa. Therefore, today’s featured fossil is the duckbill dinosaur Edmontosaurus from the Late Cretaceous of North America.

"Duckbill dinosaurs (Hadrosauridae) originated during the Late Cretaceous in North America and later spread via a land bridge to Eurasia. Due to the breakup of the supercontinent Pangaea in the Mesozoic and high sea levels, Africa was for 75 million years (including the Late Cretaceous) an isolated island continent similar to modern Australia. The vast ancient Tethys ocean separated Africa from Eurasia and America. Consequently, duckbill dinosaurs were not expected to be found in Africa.

"Therefore, it was a big surprise when Longrich et al. (2021) described the first duckbill dinosaur from the Late Cretaceous of Morocco in North Africa. The new species belonged to a clade of lambeosaurine hadrosaurids otherwise only known from Europe, which arguably implies that these animals had to somehow cross the Tethys ocean to reach the shores of Africa. Longrich et al. discussed the various possibilities for trans-oceanic dispersal by rafting and swimming, and even mentioned that “dispersal across marine barriers also occurs in other hadrosaurid lineages and titanosaurian sauropods, suggesting oceanic dispersal played a key role.” Really? Just imagine a giant sauropod swimming or rafting in the middle of the wild ocean, not to speak about sharks and the large diversity of voracious large marine reptile predators (e.g., mosasaurs and pliosaurs) in the Late Cretaceous that would have happily feasted on such a helpless meat ball. Even mainstream paleontologists considered such “long-distance trans-oceanic dispersal of such large-bodied and highly terrestrial animals” as highly unlikely and implausible."

Comment: Bechly continues with a wry look at Darwinist just-so explanations: swimming, rafting, the geology is wrong, there were archipelagoes to skip along, etc. Any excuse to explain the fossil dispersal. Bechly, as a highly trained Ph.D. in paleontology, has taken up fossil studies which dispute Darwin in any way, and his examples are numerous, presenting a different one every Friday.

Evolution: how Archaea use hydrogen differently

by David Turell @, Wednesday, June 12, 2024, 15:55 (162 days ago) @ David Turell

As the most ancient animal before oxygenation, itvis a logical finding:

https://www.sciencealert.com/third-form-of-life-makes-energy-in-remarkable-ways-scienti...

"...scientists have discovered that archaea – the third form of life after bacteria and eukaryotes – have been making energy using hydrogen gas and 'ultraminimal' enzymes for billions of years.

"Specifically, the international team of researchers discovered that at least nine phyla of archaea, a domain of single-celled organisms lacking internal membrane-bound structures, produce hydrogen gas using enzymes thought to only exist in the other two forms of life.

"Archaea, they realized, not only have the smallest hydrogen-using enzymes compared to bacteria and eukaryotes, but their enzymes for consuming and producing hydrogen are also the most complex characterized so far.

"Small and mighty, these enzymes have seemingly allowed archaea to survive and thrive in some of Earth's most hostile environments where little to no oxygen is found.

***

"Microorganisms produce and release hydrogen gas (H2) for entirely different purposes, mainly to dispose of excess electrons produced during fermentation, a process whereby organisms extract energy from carbohydrates such as sugars without oxygen.

"Enzymes used for consuming or producing H2 are called hydrogenases, and they were first comprehensively surveyed across the tree of life only eight years ago. Since then, the number of known microbial species has exploded, particularly archaea, which hide out in extreme environments, such as hot springs, volcanoes, and deep-sea vents.

"However, most archaea are known only from chunks of their genetic code found in these environments, and many haven't been cultured in the lab because it's very difficult to do so.

***

"But unlike bacteria and eukaryotes, further analyses showed that archaea assemble "remarkable hybrid complexes" for their hydrogen production needs, fusing two types of hydrogenases together.

"'These findings reveal new metabolic adaptations of archaea, streamlined H2 catalysts for biotechnological development, and a surprisingly intertwined evolutionary history between the two major H2-metabolizing enzymes," the team writes in their paper.

"Many of the cataloged archaea genomes analyzed in this study are, however, incomplete, and who knows how many more species are yet to be discovered.

"It's more than likely that archaea harbor other ingenious ways of making energy that we are yet to find."

Comment: as the most ancient form of life, it required these mechanisms to survive, using hydrogen as the available gas for 'respiration'.

Evolution: Bechly revisits snake explosion

by David Turell @, Saturday, June 29, 2024, 18:50 (145 days ago) @ David Turell

Snake evolution is a big bang in evolution:

https://evolutionnews.org/2024/06/fossil-friday-snake-origins-yet-another-biological-bi...

"...there was another open question concerning the origin of snakes: Did their distinct body plan evolve gradually as predicted by Darwinian evolution, or did snakes appear abruptly on the scene as predicted by intelligent design theory? Earlier this year a seminal new study was published by a team of researchers from the University of Michigan and Stony Brook University in the prestigious journal Science.

***

" The study found that all the characteristic traits of the snake body plan, such as the flexible skull with articulated jaws, the loss of limbs, and the elongated body with hundreds of vertebrae, all appeared in a short window of time about 100-110 million years ago. This arguably would imply that snakes became “evolutionary winners” because they evolved “in breakneck pace” (Wilcox 2024), which the senior author of the study explained with the ad hoc hypothesis that “snakes have an evolutionary clock that ticks a lot faster than many other groups of animals, allowing them to diversify and evolve at super quick speeds” (Osborne 2024). Well, that is not an explanation at all, but just a rephrasing of the problem. How could such a super quick evolution be accommodated within the framework of Darwinian population genetics and thus overcome the waiting time problem?

" My prediction is that this will prove to be another good example of the fatal waiting time problem for neo-Darwinism. In any case we can add the origin of snakes to the large number of abrupt appearances in the history of life (Bechly 2024), and I am happy to embrace the name coined by the authors of the new study for this remarkable event: The macroevolutionary singularity of snakes. This does not sound very Darwinian, does it? So what do the authors suggest as causal explanation? They have none and the press release from Stony Brook University (SBU 2024) therefore concludes with this remarkable admission: “The authors note that the ultimate causes, or triggers, of adaptive radiations is a major mystery in biology. In the case of snakes, it’s likely there were multiple contributing factors, and it may never be possible to fully define each factor and their role in this unique evolutionary process.” It other words, it was a biological Big Bang and they have no clue what caused it. But of course it must have been unguided evolution, no intelligence allowed!"

Comment: dhw will ask if snakes are necessary for God's goal to produce humans. He made them so rapidly He must have thought so. I entered a more complete coverage of the actual literature here: 2024-02-23, 16:16. There are multiple sudden appearances of species throughout evolution, first admitted by Gould years ago.

Evolution: multicellularity from snowball Earth

by David Turell @, Wednesday, July 24, 2024, 18:45 (120 days ago) @ David Turell

A new reasonable theory:

https://www.quantamagazine.org/the-physics-of-cold-water-may-have-jump-started-complex-...

"To very small single-celled creatures, thick seawater would have posed some big problems. Bacteria feed by diffusion — the movement of nutrients through water from areas of high concentration to low concentration — and tend to wait for food to come to them. However, at low temperatures, diffusion slows down. Nutrients don’t travel as quickly or as far. For cells, living in a cold and more viscous fluid means getting less to eat. Even very small organisms that can propel themselves, such as cells with flagella, move more slowly in cold water. As a result, they encounter food less frequently.

"A bigger organism, on the other hand, can navigate thicker waters without much trouble. A cluster of cells has the benefit of inertia: Their combined mass is large enough to allow them to build up steam and barrel through thicker fluid. “At some point, you are too big for this to matter,” Simpson said.

***

"There’s no way for biologists to travel back in time to test the real conditions of Snowball Earth, but they can try to re-create aspects of them in the lab. In an enormous, custom-made petri dish, Halling and Simpson created a bull’s-eye target of agar gel — their own experimental gauntlet of viscosity. At the center, it was the standard viscosity used for growing these algae in the lab. Moving outward, each concentric ring had higher and higher viscosity, finally reaching a medium with four times the standard level. The scientists placed the algae in the middle, turned on a camera, and left them alone for 30 days — enough time for about 70 generations of algae to live, swim around for nutrients and die.

***

"Simpson was particularly curious as to whether algae that made it into the highest viscosity ring would find ways to increase their swimming speed. The algae are photosynthetic, so they get energy from the sun. But they need to pick up nutrients such as phosphorus from the environment, so movement is still important to their survival. Maintaining the same level of nutrients in high-viscosity surroundings would require them to find a way to keep up their speed.

"After 30 days, the algae in the middle were still unicellular. As the scientists put algae from thicker and thicker rings under the microscope, however, they found larger clumps of cells. The very largest were wads of hundreds. But what interested Simpson the most were mobile clusters of four to 16 cells, arranged so that their flagella were all on the outside. These clusters moved around by coordinating the movement of their flagella, the ones at the back of the cluster holding still, the ones at the front wriggling. (my bold)

Comparing the speed of these clusters to the single cells in the middle revealed something interesting. “They all swim at the same speed,” Simpson said. By working together as a collective, the algae could preserve their mobility.

***

Intriguingly, when the scientists took these little clusters from the high-viscosity gel and put them back at low viscosity, the cells stuck together. They remained this way, in fact, for as long as the scientists continued to watch them, about 100 more generations. Clearly, whatever changes they underwent to survive at high viscosity were hard to reverse, Simpson said — perhaps a move toward evolution rather than a short-term shift.

Modern-day algae are not early animals. But the fact that these physical pressures forced a unicellular creature into an alternate way of life that was hard to reverse feels quite powerful, Simpson said. He suspects that if scientists explore the idea that when organisms are very small, viscosity dominates their existence, we could learn something about conditions that might have led to the explosion of large forms of life.

***

From the time Simpson first realized that such limits on movement could be a monumental obstacle to microscopic life, he hasn’t been able to stop thinking about it. Viscosity may have mattered quite a lot in the origins of complex life, whenever that was. (my bold)

***

it’s difficult to say how much importance to assign to this era. Butterfield also remarked on this uncertainty: “There’s no evidence of anything getting large until quite a bit after [Snowball Earth].”

That said, Brocks found Simpson’s experiment quite clever and beautiful. The fact that organisms might respond to high viscosity by developing collective behavior deserves to be better understood, he said — whether Snowball Earth led to the evolution of complex animal life or not.

Comment: A revolutionary idea to explain how multicellular life arrived. God, as designer, could have directed this method.

Evolution: the role of dGRNs

by David Turell @, Saturday, July 27, 2024, 18:29 (117 days ago) @ David Turell

In experimental gene studies:

https://evolutionnews.org/2024/07/on-developmental-gene-regulatory-networks-the-scienti...

"...over 100 years of mutagenesis experiments show that mutations in genes regulating development are invariably deleterious (or in some cases have only trivial effects). Meyer summarizes: “This generates a dilemma: major changes are not viable; viable changes are not major. In neither case do the kinds of mutation that actually occur produce viable major changes of the kind necessary to build new body plans.”

"We see these deleterious effects particularly in experiments on developmental gene regulatory networks (dGRNs), complex networks of gene-interaction which regulate the expression of genes early in development as an organism’s body plan begins to grow. After reviewing experimental work on dGRNs, Meyer finds that, “These dGRNs cannot vary without causing catastrophic effects to the organism.”

***

"...if changes to dGRNs are lethal to an embryo, how can they be modified to explain how new body plans evolve? Meyer’s writes in the book: “The system of gene regulation that controls animal-body-plan development is exquisitely integrated, so that significant alterations in these gene regulatory networks inevitably damage or destroy the developing animal. But given this, how could a new animal body plan, and the new dGRNs necessary to produce it, ever evolve gradually via mutation and selection from a preexisting body plan and set of dGRNs?”

***

"Meyer was justified in making these arguments. The work of the late Caltech developmental biologist Eric Davidson, an eminent expert in the field of evo-devo, shows that mutations in genes that affect body plan characteristics (which tend to be expressed early, as the body plan is being put in place) don’t lead to new body plans — they lead to dead embryos.

***

" [Davidson:] Interference with expression of any [genes in the dGRN kernel] by mutation or experimental manipulation has severe effects on the phase of development that they initiate. This accentuates the selective conservation of the whole subcircuit, on pain of developmental catastrophe.

"This intolerance of body plan-affecting dGRNs to fundamental perturbations indicates that they could not have evolved by undirected mutations. Many coordinated mutations would be needed to convert one functional dGRN that generates a particular body plan into a different dGRN that generates a different body plan."

Comment: careful DNA studies show no way to have major evolutionary advances in phenotype by specific mutations affecting dGRNs. There is another viewpoint from ID folks in this article:

"What we do know from experience, however, is that large increases in functionally specified information — especially information expressed in an alphabetic or digital form — are always produced by conscious and rational agents. So the best explanation for the explosion of information necessary to produce the Cambrian animals (whether that explosion occurred during or before the Cambrian period) remains intelligent design."
Darwin’s Doubt, p. 448

I agree.

Evolution: the speed of adaptations

by David Turell @, Tuesday, September 10, 2024, 16:49 (72 days ago) @ David Turell

Can be very quick:

https://www.livescience.com/planet-earth/evolution/how-fast-does-evolution-happen?utm_t...

"First, let's define evolution, which is the process by which a species' genes or physical appearance changes gradually over time. The driving force is natural selection, in which individuals with more beneficial traits survive and reproduce, sending those traits to the next generation. Over many generations, this is known as adaptive evolution.

"Combined, natural selection and adaptive evolution allow a "species to track changes in its environment," said Timothée Bonnet, an evolutionary biologist at the French National Center for Scientific Research and La Rochelle University.

"In the famous example of Darwin's finches on the Galápagos Islands, different species evolved different beak shapes and sizes within a few decades to specialize in feeding on different types of nuts and insects. This finding made waves following the publication of the Pulitzer Prize-winning book, "The Beak of the Finch: A Story of Evolution in Our Time" (Knopf, 1994).

"Then, there's a third component: speciation. This is when one species branches off into two distinct species over time. Bonnet said this happens much more slowly than adaptive evolution. (my bold)

"By the early to mid-20th century, scientists realized that evolution can happen much more quickly than Darwin ever thought by using the theory of natural selection to make crops more palatable in as few as seven years and domesticate dogs over a few generations. "We made evolution happen," Bonnet told Live Science. "We could see that the change happening at this scale of a few generations (can) be quite dramatic."

***

"Bonnet and an international team of researchers analyzed decades of genetic data for 19 bird and mammal species. They found that the rate of adaptive evolution was two to four times faster than previous estimates. More specifically, each generation increased its survival and reproduction by 18.5%, on average, under completely stable conditions.

"This means that if survival and reproduction decreased by a third, adaptive evolution would help a population recover in three to seven generations. Bighorn sheep (Ovis canadensis) evolved horns that were 0.7 inches (2 centimeters) shorter than before over 20 years, or three generations, because hunters had targeted those with larger horns. Snow voles (Chionomys nivalis) shrank by up to 0.1 ounces (3 grams) over 10 years, or eight generations, probably because of changes in snowfall.

***

"'Rates of evolution can be fantastically fast because of that constant environmental change," Michael Benton, a vertebrate paleontologist at the University of Bristol, told Live Science. But "the shorter the time scale, the faster the rate, and this is after you have corrected for time," he added.

"Stroud and his colleagues at the University of Miami are now using nonnative green iguanas as a case study for rapid evolution. The warm-adapted lizards are known to freeze and fall out of trees during Miami's infrequent cold snaps.

"'What we saw is that some die, but some survive — and the ones that survive can actually tolerate colder temperatures than the ones we measured before," Stroud said. "So it suggests that evolution might be happening."

"The fossil record holds some clues, too. In the Triassic period (251.9 million to 201.3 million years ago), after the Permian extinction, large marine reptiles called ichthyosaurs evolved to be gigantic in less than 3 million years — more quickly than whales did — because they became the ocean's top predators.

"Factors such as adjusting to new conditions, filling new niches, evading predators and competing with other animals often increase how quickly an animal can evolve, Benton said."

Comment: to think clearly about evolution do not confuse adaptive evolution with speciation. Adaptations can occur very quickly as the article shows. Note my bold. Speciation takes extended time. We currently find species new to us, but we do not see speciation in action, and do not know how it works.

Evolution, survival and adaptation

by Balance_Maintained @, U.S.A., Tuesday, February 20, 2018, 07:50 (2467 days ago) @ dhw

Sometimes I think we zoom to far in when we are looking at the subject. In this case, what looks like fierce competition when viewed closely appears as wonderful harmony when we step back and look at the ecosystems as a whole. Perhaps the 'competitive' element is there as a product to prevent the degradation of the species through laziness and glut.

In this sense, it is little different than the idea of Capitalism. Through competition we improve both quality and efficiency of what we have to offer. Some businesses fail, some thrive, but in the end, it there is a net gain to the larger society.

If that is true, it would make sense that God would preprogram that concept, as it would cover a multitude of behaviors and provide multiple benefits both to the species and the ecosystem.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution, survival and adaptation

by dhw, Tuesday, February 20, 2018, 12:04 (2466 days ago) @ Balance_Maintained

TONY: Sometimes I think we zoom to far in when we are looking at the subject. In this case, what looks like fierce competition when viewed closely appears as wonderful harmony when we step back and look at the ecosystems as a whole. Perhaps the 'competitive' element is there as a product to prevent the degradation of the species through laziness and glut.

In this sense, it is little different than the idea of Capitalism. Through competition we improve both quality and efficiency of what we have to offer. Some businesses fail, some thrive, but in the end, it there is a net gain to the larger society.

If that is true, it would make sense that God would preprogram that concept, as it would cover a multitude of behaviors and provide multiple benefits both to the species and the ecosystem.

Delighted to have you contributing again, and once more my thanks for your New Year message.

The above, as usual, is a thought-provoking argument, but (also as usual) it leads to a lot of questions. Which species and which ecosystems are you looking at as a whole? Ecosystems have come and gone throughout the history of life, and although I know you dispute the figure of 99%, you will not dispute that vast numbers of species have gone extinct - the most extreme form of “degradation”! So net gain for which species and which ecosystem?

You might apply the same argument to capitalism. Which “larger society” are you thinking of? And one might even ask which form of capitalism? In most societies and under most systems it seems that the rich get richer, whether they are capitalist industrialists or socialist government officials, while the poor get poorer. Theoretically (that word needs huge emphasis) the socialist ideal, whereby those in power take good care of the rest of us, should “result in a net gain to the larger society”, shouldn’t it? Whereas capitalism focuses firmly on the wealth of the individual. But typically, I’m not taking sides. There are good and bad ramifications with both systems, and as I see it, all systems are only as humanitarian and as ecologically efficient as the people who run them.

If God exists, I would hesitate to guess what system he would favour. If he is all-powerful, as many religious people assume, I guess a benign dictatorship would be his preferred option!

Evolution, survival and adaptation

by Balance_Maintained @, U.S.A., Tuesday, February 20, 2018, 14:54 (2466 days ago) @ dhw

We don't know how many have gone extinct, but it isn't the number I would argue about. What's worth arguing about is WHY they went extinct.

Let's categorize these into three groups: those that went extinct naturally, those that went extinct through natural cataclysm, and those that went extinct due to human activity.

The latter category we can scratch from this discussion entirely, because their extinction was enacted by an intelligent (and I use the word loosely) enemy. We may also scratch catastrophies, as they would bypass the 'evolutionary' mechanism.

That leaves the category of those that went extinct naturally, without unnatural excessive interference. This is generally the province of natural selection with it's survival of the fittest. If we examine each biological niche and role, we could likely determine a biological TODO list of events that must happen for the continuation of life. We would also likely find that those organisms which best fill that todo list are the ones that survive, much as happens to business when exposed to free market forces.

At any rate,the point was, what if we examine organisms through the lens of an ecological roles, and their efficacy at filling that role, instead of looking first at the individual organism.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

Evolution, survival and adaptation

by dhw, Wednesday, February 21, 2018, 13:17 (2465 days ago) @ Balance_Maintained

TONY: We don't know how many have gone extinct, but it isn't the number I would argue about. What's worth arguing about is WHY they went extinct.

Let's categorize these into three groups: those that went extinct naturally, those that went extinct through natural cataclysm, and those that went extinct due to human activity.

The latter category we can scratch from this discussion entirely, because their extinction was enacted by an intelligent (and I use the word loosely) enemy. We may also scratch catastrophies, as they would bypass the 'evolutionary' mechanism.

That leaves the category of those that went extinct naturally, without unnatural excessive interference. This is generally the province of natural selection with it's survival of the fittest. If we examine each biological niche and role, we could likely determine a biological TODO list of events that must happen for the continuation of life. We would also likely find that those organisms which best fill that todo list are the ones that survive, much as happens to business when exposed to free market forces.

At any rate, the point was, what if we examine organisms through the lens of an ecological roles, and their efficacy at filling that role, instead of looking first at the individual organism.

I’m afraid I’m not quite sure what your point is. In your original post, you suggested that competition engendered harmony which prevented “degradation of the species through laziness and glut”, and it made sense for God to have programmed it because it provided a “multitude of benefits both to the species and the ecosystem”. I pointed out that vast numbers of species have gone extinct, and the ecosystem both local and global has been subjected to constant change. If God exists, I don’t have a problem with him setting up a system of competition – it fits in perfectly with my proposal that he gave organisms the means with which to follow their own evolutionary path. You also seem to be implying that natural extinction (probably through changes in living conditions) and natural catastrophes are not controlled by God, so all in all I can only see your post as supporting my own concept of evolution as a free-for-all. It benefited lots of different species and ecosystems in the past. Clearly the human species are current beneficiaries (while some do their best to wreck it all for others), and bacteria have never stopped benefiting.

Evolution, driven by dark DNA and hot spots?

by David Turell @, Thursday, March 08, 2018, 19:53 (2450 days ago) @ dhw

The sand rat is opening up a whole hidden area of DNA that may drive evolution, and it does not follow Darwin's theory:

https://phys.org/news/2017-08-dark-dnathe-phenomenon-evolution.html

"Some animal genomes seem to be missing certain genes, ones that appear in other similar species and must be present to keep the animals alive. These apparently missing genes have been dubbed "dark DNA". And its existence could change the way we think about evolution.

"My colleagues and I first encountered this phenomenon when sequencing the genome of the sand rat (Psammomys obesus), a species of gerbil that lives in deserts. In particular we wanted to study the gerbil's genes related to the production of insulin, to understand why this animal is particularly susceptible to type 2 diabetes.

"But when we looked for a gene called Pdx1 that controls the secretion of insulin, we found it was missing, as were 87 other genes surrounding it. Some of these missing genes, including Pdx1, are essential and without them an animal cannot survive. So where are they?

"The first clue was that, in several of the sand rat's body tissues, we found the chemical products that the instructions from the "missing" genes would create. This would only be possible if the genes were present somewhere in the genome, indicating that they weren't really missing but just hidden.

"The DNA sequences of these genes are very rich in G and C molecules, two of the four "base" molecules that make up DNA. We know GC-rich sequences cause problems for certain DNA-sequencing technologies. This makes it more likely that the genes we were looking for were hard to detect rather than missing. For this reason, we call the hidden sequence "dark DNA" as a reference to dark matter, the stuff that we think makes up about 25% of the universe but that we can't actually detect.

"By studying the sand rat genome further, we found that one part of it in particular had many more mutations than are found in other rodent genomes. All the genes within this mutation hotspot now have very GC-rich DNA, and have mutated to such a degree that they are hard to detect using standard methods. Excessive mutation will often stop a gene from working, yet somehow the sand rat's genes manage to still fulfil their roles despite radical change to the DNA sequence. This is a very difficult task for genes.

"Most textbook definitions of evolution state that it occurs in two stages: mutation followed by natural selection. DNA mutation is a common and continuous process, and occurs completely at random. Natural selection then acts to determine whether mutations are kept and passed on or not, usually depending on whether they result in higher reproductive success. In short, mutation creates the variation in an organism's DNA, natural selection decides whether it stays or if it goes, and so biases the direction of evolution.

"But hotspots of high mutation within a genome mean genes in certain locations have a higher chance of mutating than others. This means that such hotspots could be an underappreciated mechanism that could also bias the direction of evolution, meaning natural selection may not be the sole driving force.

"So far, dark DNA seems to be present in two very diverse and distinct types of animal. But it's still not clear how widespread it could be. Could all animal genomes contain dark DNA and, if not, what makes gerbils and birds so unique? The most exciting puzzle to solve will be working out what effect dark DNA has had on animal evolution.

"In the example of the sand rat, the mutation hotspot may have made the animal's adaptation to desert life possible. But on the other hand, the mutation may have occurred so quickly that natural selection hasn't been able to act fast enough to remove anything detrimental in the DNA. If true, this would mean that the detrimental mutations could prevent the sand rat from surviving outside its current desert environment.

"The discovery of such a weird phenomenon certainly raises questions about how genomes evolve, and what could have been missed from existing genome sequencing projects. Perhaps we need to go back and take a closer look."

Comment: There are also reported hot spots in the human genome which are thought to have driven human evolution. Perhaps these are God's control points. We have much to still discover.

Evolution: a yeast translates DNA two ways

by David Turell @, Friday, June 15, 2018, 19:06 (2351 days ago) @ David Turell

DNA is supposed to have one mode of translating bases. This yest has two ways:

https://www.sciencedaily.com/releases/2018/06/180614213814.htm

"DNA is often referred to as the blueprint for life, however scientists have for the first time discovered a microbe that uses two different translations of the DNA code at random. This unexpected finding breaks what was thought to be a universal rule, since the proteins from this microbe cannot be fully predicted from the DNA sequence.

***

"It was originally thought that any given codon always results in the same amino acid -- just as dot dot dot always means S in morse code. GGA in the DNA for example translates as the amino acid glycine.

"However a collaboration between Dr Stefanie Mühlhausen and Professor Laurence Hurst at the Milner Centre for Evolution at the University of Bath, and Martin Kollmar and colleagues at the Max-Planck Institute for Biophysical Chemistry in Göttingen, Germany have now described the first -- and unexpected -- exception to this rule in a natural code.

"The group examined an unusual group of yeasts in which some species have evolved an unusual non-universal code. While humans (and just about everything else) translate the codon CTG as the amino acid leucine, some of the species of yeast instead translate this as the amino acid serine whilst others translate it as alanine.

"This is odd enough in itself. But the team was even more surprised to find one species, Ascoidea asiatica, randomly translated this codon as serine or leucine. Every time this codon is translated the cell tosses a chemical coin: heads for leucine, tails it's serine.

***

"'This is the first time we've seen this in any species.

"'We were surprised to find that about 50 per cent of the time that CTG is translated as serine, the remainder of the time it is leucine.

"'The last rule of genetics codes, that translation is deterministic, has been broken. This makes this genome unique -- you cannot work out the proteins if you know the DNA."

***

"Dr Martin Kollmar, from the Max-Planck Institute for Biophysical Chemistry in Göttingen said: "We found that Ascoidea asiatica, is unusual in having two sorts of tRNAs for CTG -- one which bridges with leucine and one which bridges with serine.

"'So when CTG comes to be translated, it randomly picks one of the two tRNAs and hence randomly picks between serine and leucine."

"Dr Stefanie Mühlhausen from The Milner Centre for Evolution at the University of Bath added: "Swapping a serine for leucine could cause serious problems in a protein as they have quite different properties -- serine is often found on the surface of the protein whereas leucine is hydrophobic and often buried inside the protein.

"'We looked at how this strange yeast copes with this randomness and found that A. asiatica has evolved to use the CTG codon very rarely and especially avoids key parts of proteins."
The researchers estimate that the random encoding is 100 million years old, but other closely related species evolved to lose this potentially problematic trait.

"Dr Martin Kollmar said: "It's unclear why A. asiatica should have retained this stochastic encoding for so long. Perhaps there are rare occasions when this sort of randomness can be beneficial.'"

Comment: This article suggests DNA had more than one way of translation 100 million years ago. Perhaps that variability helped drive evolution.

Evolution, survival and adaptation

by David Turell @, Tuesday, June 11, 2019, 18:44 (1990 days ago) @ dhw

Current plant extinction rates worry environmentalists:

https://www.nature.com/articles/d41586-019-01810-6?utm_source=Nature+Briefing&utm_c...

"The world’s seed-bearing plants have been disappearing at a rate of nearly 3 species a year since 1900 ― which is up to 500 times higher than would be expected as a result of natural forces alone, according to the largest survey yet of plant extinctions.

"The project looked at more than 330,000 species and found that plants on islands and in the tropics were the most likely to be declared extinct. Trees, shrubs and other woody perennials had the highest probability of disappearing regardless of where they were located.

***

"Govaerts started the database in 1988 to track the status of every known plant species. As part of that project, he mined the scientific literature and created a list of seed-bearing plant species that were ruled extinct, and noted which species scientists had deemed to be extinct but were later rediscovered.

"In 2015, Govaerts teamed up with plant evolutionary biologist Aelys Humphreys at Stockholm University in Sweden and others to analyse the data. They compared extinction rates across different regions and characteristics such as whether the plants were annuals that regrow from seed each year or perennials that endure year after year.

"The researchers found that about 1,234 species had been reported extinct since the publication of Carl Linnaeus’s compendium of plant species, Species Plantarum, in 1753. But more than half of those species were either rediscovered or reclassified as another living species, meaning 571 are still presumed extinct. (my bold)

"A map of plant extinctions produced by the team shows that flora in areas of high biodiversity and burgeoning human populations, such as Madagascar, the Brazilian rainforests, India and South Africa, are most at risk (see ‘Extinction pattern’). Humphreys says that the rates of extinction in the tropics is beyond what researchers expect, even when they account for the increased diversity of species in those habitats. And islands are particularly sensitive because they are likely to contain species found nowhere else in the world and are especially susceptible to environmental changes, says Humphreys."

Comment: Note the bolded paragraph. How do they really know what the extinction rate really is? We know 99% of all species are extinct as evolution progresses. Alarmism or possibly fake news

Evolution, survival and adaptation

by dhw, Wednesday, June 12, 2019, 09:11 (1990 days ago) @ David Turell

QUOTE: "The researchers found that about 1,234 species had been reported extinct since the publication of Carl Linnaeus’s compendium of plant species, Species Plantarum, in 1753. But more than half of those species were either rediscovered or reclassified as another living species, meaning 571 are still presumed extinct.(David's bold)

DAVID: Note the bolded paragraph. How do they really know what the extinction rate really is? We know 99% of all species are extinct as evolution progresses. Alarmism or possibly fake news

I don’t care about the accuracy of the statistics. The fact of the matter is that large numbers of species are going extinct, countless numbers of humans are dying or suffering because of pollution, human interference is causing many environmental catastrophes, and if the world’s politicians and industrialists don’t get their act together, the situation will simply get worse. I can only applaud all those young people who are demonstrating in the streets, demanding action.

Evolution, survival and adaptation

by David Turell @, Wednesday, June 12, 2019, 15:28 (1989 days ago) @ dhw

QUOTE: "The researchers found that about 1,234 species had been reported extinct since the publication of Carl Linnaeus’s compendium of plant species, Species Plantarum, in 1753. But more than half of those species were either rediscovered or reclassified as another living species, meaning 571 are still presumed extinct.(David's bold)

DAVID: Note the bolded paragraph. How do they really know what the extinction rate really is? We know 99% of all species are extinct as evolution progresses. Alarmism or possibly fake news

dhw: I don’t care about the accuracy of the statistics. The fact of the matter is that large numbers of species are going extinct, countless numbers of humans are dying or suffering because of pollution, human interference is causing many environmental catastrophes, and if the world’s politicians and industrialists don’t get their act together, the situation will simply get worse. I can only applaud all those young people who are demonstrating in the streets, demanding action.

I don't kn ow if politicians can get their acts. together.

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