What makes life vital (Introduction)

by David Turell @, Saturday, February 28, 2015, 15:33 (3555 days ago)

An essay on the total interconnectedness of living tissues and organisms by Stephen L. Talbott:-http://www.thenewatlantis.com/publications/the-unbearable-wholeness-of-beings-" This is the second in a set of essays by Mr. Talbott explaining the significance of a revolution in genetics and molecular biology. The first installment, “Getting Over the Code Delusion,” which appeared in our Summer 2010 issue, sought to puncture some of the familiar dogmas about DNA as rigidly encoded destiny. Subsequent installments are: “What Do Organisms Mean?” (Winter 2011) and “Evolution and the Illusion of Randomness” (Fall 2011)."-"The aspects of the organism triggering the whole dispute have commonly been associated with one or more of the following themes:-• The peculiar unity of whole and part: The form, existence, and activities of the parts depend upon, and arise from — are in some sense caused by — the whole, which is therefore expressed in one way or another through every part. This is much like the relation between individual words and their context — which is not surprising, since language is itself an expression of organic life.-• Means-end (“purposive” or “final”) relations: Biological activities are carried out as if “with a view toward” or “for the sake of” some end. The organism “aims” to develop and sustain itself as a being with its own particular character. (I use quotation marks here because it is agreed on all sides that the directed aspect of biological performance should be distinguished from conscious human purpose, even if such purpose is viewed as a coming to intentional self-awareness of whatever expresses itself unreflectively in the wisdom of the body.)-• The mutual (reciprocal) play of cause and effect: Effects are not merely effects, but can simultaneously react back upon their causes. Or, as Kant puts it, the parts “should so combine in the unity of a whole that they are reciprocally cause and effect of each other's form.”[29]-" To give an archetypal example, as the embryo polarizes into anterior and posterior, each pole is not only “opposite” to the other, but necessarily implied in the other. Each pole is properly formed only by virtue of the other's being formed. Neither is a unilateral cause of the other.-"All three of these features are at least suggested by the rather simpler statement that we find in every organism a meaningful coordination of its activities, whereby it becomes a functioning and self-sustaining unity engaged in a flexible response to the infinitely varying stimuli of its environment. By virtue of this coordination, every local or partial activity expresses its share in the distinctive character of the whole. The ability of the organism to pursue its own ends amid an ever-shifting context means that causal relations become fluid and diffuse, losing all fixity. They are continually subordinated to, or lifted into service of, the agency of the organism as a whole."-In summary his point is that we are not machines in any true sense of the word. After reading his essay, tell me if you still think this can develop from inorganic material by chance. I've read and quoted from all four essays. Try them out.

What makes life vital

by dhw, Sunday, March 01, 2015, 08:04 (3555 days ago) @ David Turell
edited by dhw, Sunday, March 01, 2015, 08:23

DAVID: An essay on the total interconnectedness of living tissues and organisms by Stephen L. Talbott:-http://www.thenewatlantis.com/publications/the-unbearable-wholeness-of-beings-QUOTE: "...we find in every organism a meaningful coordination of its activities, whereby it becomes a functioning and self-sustaining unity engaged in a flexible response to the infinitely varying stimuli of its environment.” -DAVID: In summary his point is that we are not machines in any true sense of the word. After reading his essay, tell me if you still think this can develop from inorganic material by chance. I've read and quoted from all four essays. Try them out.-You have indeed quoted them, and I have pointed out that over and over again he contradicts your claim that organisms are automatons. Here he quotes McClintock again (as he did before, remarking how prescient she was): In the future we should try to “determine the extent of knowledge the cell has of itself and how it utilizes this knowledge in a ‘thoughtful' manner when challenged.” You may recall your own ironic comment about cells forming committees, but that is precisely the image he actually uses here: "Alternatively, as another research group has put it, we see a “collaborative” process that can be “pictured as a table around which decision-makers debate a question and respond collectively to information put to them.” Except that he goes on to say there are countless such tables.-In this essay he stresses that EVERY organism coordinates its activities meaningfully, although he is careful to point out that "the directed aspect of biological performance should be distinguished from conscious human purpose". (None of my "favourite scientists" claim that cells/cell communities are conscious in a human way.) As usual, however, you prefer to dwell on the question of whether organic material can develop from inorganic material by chance. If your question is addressed to me, the answer is that I don't how organic material developed. Nor does anyone else. We have nothing but hypotheses. Meanwhile, if organisms are not machines, what are they? Talbott concludes: “But who knows what disagreeable entanglements might follow once we find ourselves staring into the face of other beings?” (The italics are his; the bold is mine.) After reading his essay, which argues that organisms are NOT machines, please tell me if you still think cells / cell communities are automatons?

What makes life vital

by David Turell @, Sunday, March 01, 2015, 19:36 (3554 days ago) @ dhw

DAVID: An essay on the total interconnectedness of living tissues and organisms by Stephen L. Talbott:
> 
> http://www.thenewatlantis.com/publications/the-unbearable-wholeness-of-beings
&... 
> QUOTE: "...we find in every organism a meaningful coordination of its activities, whereby it becomes a functioning and self-sustaining unity engaged in a flexible response to the infinitely varying stimuli of its environment.” 
> 
> DAVID: In summary his point is that we are not machines in any true sense of the word. After reading his essay, tell me if you still think this can develop from inorganic material by chance. I've read and quoted from all four essays. Try them out.
> 
> dhw: You have indeed quoted them, and I have pointed out that over and over again he contradicts your claim that organisms are automatons.-No he does not. I know the quotes to intelligence you love referring to are in the essays I present. You act as if I don't know them. I keep repeating the point that life is a very complex interaction of biochemical reactions resulting in the emergence of the phenomenon we call life. We live in the inside of that phenomenon. As he points out a dead body and a live body are exactly the same except in the dead body life is absent. To repeat for the nth time: life works on implanted information and he presents a diagram of some of the enormous complex ongoing interactions to create the phenomenon of life.-> dhw> "Alternatively, as another research group has put it, we see a “collaborative” process that can be “pictured as a table around which decision-makers debate a question and respond collectively to information put to them.” Except that he goes on to say there are countless such tables.-Exactly true, and if a tiny aspect of that collaboration is at fault we see a genetic disease such as 'sickle cell' with poorly made hemoglobin, made to survive in Africa because the malaria parasite can't use it, and allows these poor folks to live and reproduce, fixing a trait we do not need. -Further, there are two levels of information to be concerned with: the received and the on-board guidance info. Both exist and both require and control the cooperation of all the various interactions for life to exist. Some of the received info is from the exterior, but most of it is info between the different cooperating organs that keep us alive. Organs that run on in internal supplied instructional information. -> dhw:After reading his essay, which argues that organisms are NOT machines, please tell me if you still think cells / cell communities are automatons?-As Talbott points out, we do not have the descriptive terms in our language to really define a living being. Of course we are not machines but we are machine-like, with cogs and pulleys and whatever to function properly. But our bodies are at a much higher level with the emergence of life. That is his real point. The terms you like to seize on are analogies, because the concept of how life works biochemically is so hard to describe. How do we know how complex cellular function is? The research biochemists carefully delineate each single step of these complex molecular interactions, controlled by information in the genome. There must be underlying carefully planned controls. Life cannot be a free for all disco dance.

What makes life vital

by Balance_Maintained @, U.S.A., Monday, March 02, 2015, 03:39 (3554 days ago) @ David Turell

David: As Talbott points out, we do not have the descriptive terms in our language to really define a living being. Of course we are not machines but we are machine-like, with cogs and pulleys and whatever to function properly. But our bodies are at a much higher level with the emergence of life. That is his real point. The terms you like to seize on are analogies, because the concept of how life works biochemically is so hard to describe. How do we know how complex cellular function is? The research biochemists carefully delineate each single step of these complex molecular interactions, controlled by information in the genome. There must be underlying carefully planned controls. Life cannot be a free for all disco dance.-I think I might start with the word "alive" "living" and "conscious". The problem is not the language that we possess, but rather our insistence on treating living creatures as machines. Sprocket A turns cog B and we get thigamajigger D to do a little dance causing bobble C to wobble precariously and create cancer. Presto!-This goes hand in hand with our understanding of biology, genetics, and virtually all of life. Ever since the rise of naturalism and reductionism our outlook has been that of looking at everything mechanically. The problem is not our language, it is our worldview.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

What makes life vital

by David Turell @, Monday, March 02, 2015, 05:26 (3554 days ago) @ Balance_Maintained

Tony: This goes hand in hand with our understanding of biology, genetics, and virtually all of life. Ever since the rise of naturalism and reductionism our outlook has been that of looking at everything mechanically. The problem is not our language, it is our worldview.-Good point. Sometimes it is hard to recognize our bodies are more than machines. But that is how we describe them.

What makes life vital

by dhw, Monday, March 02, 2015, 12:30 (3554 days ago) @ David Turell

dhw: ....I have pointed out that over and over again he [Talbott] contradicts your claim that organisms are automatons.
DAVID: No he does not. I know the quotes to intelligence you love referring to are in the essays I present. You act as if I don't know them. I keep repeating the point that life is a very complex interaction of biochemical reactions resulting in the emergence of the phenomenon we call life. -This is a constant source of misunderstanding between us. Of course life is a complex interaction of biochemical reactions, and that has never been the point at issue, which is summed up by the following: 
DAVID: The terms you like to seize on are analogies, because the concept of how life works biochemically is so hard to describe.-The terms I seize on describe not the concept of how life works biochemically, but attributes of the living organisms - even including bacteria - which my “favourite scientists” say are sentient, conscious, intelligent, communicative, decision-making beings. (In the latest Talbott article, he italicizes “beings”, i.e. as opposed to machines.) These are not analogies. Your response has always been that they may look intelligent but in fact they are automata. Automata ARE machines.-TONY: I think I might start with the word "alive" "living" and "conscious". The problem is not the language that we possess, but rather our insistence on treating living creatures as machines. Sprocket A turns cog B and we get thigamajigger D to do a little dance causing bobble C to wobble precariously and create cancer. Presto!
This goes hand in hand with our understanding of biology, genetics, and virtually all of life. Ever since the rise of naturalism and reductionism our outlook has been that of looking at everything mechanically. The problem is not our language, it is our worldview.
DAVID: Good point. Sometimes it is hard to recognize our bodies are more than machines. But that is how we describe them.-I would like to think that Tony's comments do not refer solely to humans but to all organisms, as his reference to world view would seem to indicate, and not solely to bodies but to the attributes I have listed above. (Tony, please correct me if I'm wrong.) In other words, sometimes it is hard to recognize that non-humans (perhaps even single-celled organisms like bacteria) are more than machines, but that is how you, David, describe them. My “favourite scientists” describe them as sentient, conscious, intelligent etc. beings - terms which could easily be avoided if they were to be taken metaphorically and not literally.

What makes life vital

by David Turell @, Monday, March 02, 2015, 18:29 (3553 days ago) @ dhw


> dhw: This is a constant source of misunderstanding between us. Of course life is a complex interaction of biochemical reactions, and that has never been the point at issue, which is summed up by the following: 
> DAVID: The terms you like to seize on are analogies, because the concept of how life works biochemically is so hard to describe.
> 
> The terms I seize on describe not the concept of how life works biochemically, but attributes of the living organisms - even including bacteria - which my “favourite scientists” say are sentient, conscious, intelligent, communicative, decision-making beings. (In the latest Talbott article, he italicizes “beings”, i.e. as opposed to machines.) These are not analogies. Your response has always been that they may look intelligent but in fact they are automata. Automata ARE machines.-I see the difference in our thinking. I understand living beings as living machines. All of the processes in a living being are automatic, i.e., the kidney controlling the blood by changing urine concentrations. What is not automatic is consciousness because we control what we wish to think and our brain controls the responses necessary to accommodate us. Bacteria are not conscious. My view is a process of reductionism, as I understand the biochemistry of the automatic reactions. I also understand that these reactions are under instructions in the genome (more vastly complex than just the genes themselves) and those instructions are information, the origin of which we discuss. The whole process of the reactions is very intertwined and what emerges is a living organism. Life is an emergent property as Talbott instructs us. 
> 
> TONY: I think I might start with the word "alive" "living" and "conscious". The problem is not the language that we possess, but rather our insistence on treating living creatures as machines. Sprocket A turns cog B and we get thigamajigger D to do a little dance causing bobble C to wobble precariously and create cancer. Presto!
> This goes hand in hand with our understanding of biology, genetics, and virtually all of life. Ever since the rise of naturalism and reductionism our outlook has been that of looking at everything mechanically. The problem is not our language, it is our worldview.
> DAVID: Good point. Sometimes it is hard to recognize our bodies are more than machines. But that is how we describe them.
> 
> dhw: I would like to think that Tony's comments do not refer solely to humans but to all organisms, as his reference to world view would seem to indicate, and not solely to bodies but to the attributes I have listed above. (Tony, please correct me if I'm wrong.) In other words, sometimes it is hard to recognize that non-humans (perhaps even single-celled organisms like bacteria) are more than machines, but that is how you, David, describe them. My “favourite scientists” describe them as sentient, conscious, intelligent etc. beings - terms which could easily be avoided if they were to be taken metaphorically and not literally.-I agree with Tony and I accept your comment to accept the terms as metaphors, recognizing the limitation of the use of metaphors to get around a language problem.-The other issue in live and dead animals is the availability of the information in the genome. This is really what creates life. The animal is dead because it can no longer access the life-running information. All the processes are stopped. In resuscitation failed organs (heart and brain) are supported until they can reacquire access to the information that runs life. Look at this quote:-“Information doesn't have mass or charge or length in millimeters. Likewise, matter doesn't have bytes. You can't measure so much gold in so many bytes. It doesn't have redundancy, or fidelity, or any of the other descriptors we apply to information. This dearth of shared descriptors makes matter and information two separate domains of existence, which have to be discussed separately, in their own terms.” - G. C. Williams, quoted in By Design or by Chance?, p. 234." (2004)-I couldn't say it better. The emergence of life from the materials in living beings is due to the information in the codes of the genome and in all the modifiers of the genome complex. The Darwin folks seem very reluctant to get into the information issue, because recognition of the importance of that information is a direct threat to a mechanistic chance process of evolution being the correct interpretation. You don't like my constant referral to chance since you 'sort of' accept that chance is a doubtful concept, but all of these considerations are bound together. Information is a direct antithesis to chance. Material processes can't create the information that guides life. Mentation does. Do you realize your pan-psychism theory feeds off of that statement? My case is rested for now.

What makes life vital

by dhw, Tuesday, March 03, 2015, 18:00 (3552 days ago) @ David Turell

DAVID: I see the difference in our thinking. I understand living beings as living machines. All of the processes in a living being are automatic, i.e., the kidney controlling the blood by changing urine concentrations. What is not automatic is consciousness because we control what we wish to think and our brain controls the responses necessary to accommodate us. Bacteria are not conscious. My view is a process of reductionism, as I understand the biochemistry of the automatic reactions. -There is no difference in our thinking until you make the claim that bacteria are not conscious. Yes, we are all living machines as far as our bodily functions go. But you insist that bacteria are nothing more, whereas my “favourite scientists” again and again tell us that bacteria are conscious, sentient BEINGS (not automata). Tony wrote: "Ever since the rise of naturalism and reductionism our outlook has been that of looking at everything mechanically. The problem is not our language, it is our worldview." You take the same reductionist view of organisms other than humans, though you agree that certain “higher” forms of organism have a degree of consciousness. That is the sticking point between you and me and all the scientists whose findings you disagree with. (As a layman, I am in no position to insist that they are right or wrong, but nor are you.)-Dhw: My “favourite scientists” describe them as sentient, conscious, intelligent etc. beings - terms which could easily be avoided if they were to be taken metaphorically and not literally.
DAVID: I agree with Tony and I accept your comment to accept the terms as metaphors, recognizing the limitation of the use of metaphors to get around a language problem.-Perhaps what I wrote was not clear. In my view these terms are NOT metaphors. There is absolutely no need for scientists to describe bacteria as conscious, sentient etc. if that is not what they mean. The difficulty does not lie in language, but in the fact that some humans seem to be incapable of recognizing that other forms of life might have other forms of consciousness. It is the curse of anthropocentrism.When asked why the concept of bacterial cognition was controversial, James Shapiro replied: “Large organisms chauvinism, so we like to think that only we can do things in a cognitive way.” Do you really think that is a metaphor?
 
DAVID: Material processes can't create the information that guides life. Mentation does. Do you realize your pan-psychism theory feeds off of that statement? My case is rested for now.-Yes, my panpsychism hypothesis entails mental activity in all things. It is a kind of third way which I certainly find believable when applied to living organisms, but considerably less believable in relation to inorganic materials.
 
To sum up, the disagreement between us lies in your dogmatism over the possible intelligence, consciousness, sentience etc. of all living organisms, and not over the automatism of bodily functions. It is this intelligence, on which so many scientists insist, that lies at the heart of my hypothesis concerning an inventive mechanism of unknown origin that enables organisms themselves to drive evolution forward - as opposed to random mutations, and divine preprogramming or dabbling.

What makes life vital

by David Turell @, Tuesday, March 03, 2015, 20:09 (3552 days ago) @ dhw

dhw: The problem is not our language, it is our worldview[/i]." You take the same reductionist view of organisms other than humans, though you agree that certain “higher” forms of organism have a degree of consciousness. That is the sticking point between you and me and all the scientists whose findings you disagree with. -Yes I take a reductionist viewpoint here. I claim that one can follow the biochemistry of receiving stimuli and one can follow the biochemistry of the bacterial reactions. What is not seen is the action of the information in the genome controlling this dance of molecules. Is that information in the form of mentation, as you and your Darwin scientists imply or is it implanted and automatic? This is the major difference between the ID view of biology and the Darwin view. Darwinists avoid the issue like the plague. I follow the ID articles and have accepted their view. This is a major reason I am I believer.-> 
> dhw: Perhaps what I wrote was not clear. In my view these terms are NOT metaphors. There is absolutely no need for scientists to describe bacteria as conscious, sentient etc. if that is not what they mean.-Yes there is as I have explained above. To avoid the issue of where did the information in the genome codes come from. If your favorite scientists ignore the issue of information, they protect Darwinism from a huge problem, the origin of the information.-> 
> DAVID: Material processes can't create the information that guides life. Mentation does. Do you realize your pan-psychism theory feeds off of that statement? My case is rested for now.
> 
> dhw: Yes, my panpsychism hypothesis entails mental activity in all things. It is a kind of third way which I certainly find believable when applied to living organisms, but considerably less believable in relation to inorganic materials.
> 
> dhw: To sum up, the disagreement between us lies in your dogmatism over the possible intelligence, consciousness, sentience etc. of all living organisms, and not over the automatism of bodily functions. It is this intelligence, on which so many scientists insist, that lies at the heart of my hypothesis concerning an inventive mechanism of unknown origin that enables organisms themselves to drive evolution forward - as opposed to random mutations, and divine preprogramming or dabbling.-You have neatly skipped my question. Where does the information come from that Darwin scientists call mentation, using the words intelligence, sentience, consciousness? One cannot tell from the outside of a bacterium whether it acts intelligently or whether it is run by intelligent information given to it. That is our difference. Only those two possibilities exist. I view my kidney cells automaticity equal to the bacterial cell's automaticity. We multicellular types come from single cells in evolution. What changed the single cell in the transition? The multiple cells took on different cooperative functions, no more than that, and represent a shift in the content of the managing information for different cells. This is my different view of evolution from yours. I've told you your Darwin background is getting in the way of your seeing this, and note you are quoting scientists who are Darwin loyal. I'm following equally competent scientists from the other side of the argument. Again, only two equally possible mechanisms.

What makes life vital

by dhw, Wednesday, March 04, 2015, 09:43 (3552 days ago) @ David Turell

DAVID: Yes I take a reductionist viewpoint here. I claim that one can follow the biochemistry of receiving stimuli and one can follow the biochemistry of the bacterial reactions. -Agreed.-DAVID: What is not seen is the action of the information in the genome controlling this dance of molecules. Is that information in the form of mentation, as you and your Darwin scientists imply or is it implanted and automatic? This is the major difference between the ID view of biology and the Darwin view. Darwinists avoid the issue like the plague. -The major issue between us is whether or not organisms think for themselves. If a Darwinist scientist argues that they think for themselves, as my “favourite scientists” do, what issue are they avoiding? Please don't say they are avoiding the issue of where the ability to think came from. On this subject, you are debating with me and not with them, and I leave open the option that your God created the mechanism for mentation. See below.
 
dhw: In my view these terms are NOT metaphors. There is absolutely no need for scientists to describe bacteria as conscious, sentient etc. if that is not what they mean.
DAVID: Yes there is as I have explained above. To avoid the issue of where did the information in the genome codes come from. If your favorite scientists ignore the issue of information, they protect Darwinism from a huge problem, the origin of the information.-The same old escape route. Once more, there are TWO issues: 1) Do organisms think for themselves? (This underlies my hypothesis concerning an autonomous inventive mechanism that drives evolution.) 2) If they do think for themselves, what is the source of the mechanism? You persist in conflating the two issues. Autonomous intelligence does not in any way preclude the existence of God - if it did, no human would believe in God! For some reason you think my Darwin background prevents me from seeing the issue of the origin, although again and again I have emphasized my neutrality on it. Perhaps in turn you are running scared of the possibility that other organisms think for themselves because it might impinge on your belief that God controlled the whole of the evolutionary process so that it would lead to humans. Once again, the blinkering effect of anthropocentrism.
 
DAVID: One cannot tell from the outside of a bacterium whether it acts intelligently or whether it is run by intelligent information given to it. That is our difference. -Our difference is that you insist they do not act intelligently. I insist that we must keep an open mind, although the more I read, the more inclined I am to believe that other organisms, including bacteria, DO think for themselves. But I remain as neutral as ever on the source of the thinking mechanism. -DAVID: Only those two possibilities exist. I view my kidney cells automaticity equal to the bacterial cell's automaticity. We multicellular types come from single cells in evolution. What changed the single cell in the transition? The multiple cells took on different cooperative functions, no more than that, and represent a shift in the content of the managing information for different cells. This is my different view of evolution from yours.
 
No difference whatsoever. The difference lies in our view of how this cooperation and innovation (= a shift in the content of the information) might have happened: for you, divine preprogramming or dabbling; for atheists through random mutations; in my alternative, through the individual intelligences (source unknown) of cells/cell communities themselves.

What makes life vital

by David Turell @, Wednesday, March 04, 2015, 19:56 (3551 days ago) @ dhw


> dhw: The same old escape route. Once more, there are TWO issues: 1) Do organisms think for themselves? (This underlies my hypothesis concerning an autonomous inventive mechanism that drives evolution.) 2) If they do think for themselves, what is the source of the mechanism? You persist in conflating the two issues. Autonomous intelligence does not in any way preclude the existence of God ...-Not an escape route. The problem is quite clear. You and I nor anyone else can distinguish between automatic bacterial cell responses and sentient responses. There is no denying bacteria appear to make decisions; the issue is whether those decisions are automatic based on genomic information or are the result of a sentient response. No one can give a provable answer. it is all a matter of opinion. I simply have concluded my opinion and will stick with it. Obviously you are free to stick with yours.-> 
> DAVID: One cannot tell from the outside of a bacterium whether it acts intelligently or whether it is run by intelligent information given to it. That is our difference. 
> 
> dhw: Our difference is that you insist they do not act intelligently. I insist that we must keep an open mind, although the more I read, the more inclined I am to believe that other organisms, including bacteria, DO think for themselves. But I remain as neutral as ever on the source of the thinking mechanism.-There is no proof of a thinking mechanism, just the appearance of thoughtful response. I've explained my view of why bacteria appear to have thoughtful responses. 
> 
> DAVID: Only those two possibilities exist. I view my kidney cells automaticity equal to the bacterial cell's automaticity. We multicellular types come from single cells in evolution. What changed the single cell in the transition? The multiple cells took on different cooperative functions, no more than that, and represent a shift in the content of the managing information for different cells. This is my different view of evolution from yours.
> 
> dhw: No difference whatsoever. The difference lies in our view of how this cooperation and innovation (= a shift in the content of the information) might have happened: for you, divine preprogramming or dabbling; for atheists through random mutations; in my alternative, through the individual intelligences (source unknown) of cells/cell communities themselves.-I can see why you remain neutral on the source of a thinking mechanism. It is still 'thinking' or the appearance of thinking. Information can not appear de novo for conceptual thought is not material. It is based on information to be analyzed and information to do the analysis.

What makes life vital

by dhw, Thursday, March 05, 2015, 20:07 (3550 days ago) @ David Turell

DAVID: There is no denying bacteria appear to make decisions; the issue is whether those decisions are automatic based on genomic information or are the result of a sentient response. No one can give a provable answer, it is all a matter of opinion. I simply have concluded my opinion and will stick with it. Obviously you are free to stick with yours.-I am much happier with this acknowledgement that it is a matter of opinion than I am with bald statements such as bacteria are automatons / are not conscious / do not think.
 
DAVID: I can see why you remain neutral on the source of a thinking mechanism. It is still 'thinking' or the appearance of thinking. Information can not appear de novo for conceptual thought is not material. It is based on information to be analyzed and information to do the analysis.-If you believe in the Big Bang, the essence of which is that the universe had a beginning, by definition this has to be information appearing de novo. If the first cause is energy endlessly transmuting itself into matter, whether consciously (theistic) or unconsciously (atheistic), information will also constantly be appearing de novo. Analysis, however, clearly requires some kind of consciousness (or, as you put it, the information to do the analysis), but when, how, and in what form that consciousness came into being, nobody knows. This last comment applies equally to your God and to living organisms.

What makes life vital

by David Turell @, Friday, March 06, 2015, 01:03 (3550 days ago) @ dhw

DAVID: There is no denying bacteria appear to make decisions; the issue is whether those decisions are automatic based on genomic information or are the result of a sentient response. No one can give a provable answer, it is all a matter of opinion. I simply have concluded my opinion and will stick with it. Obviously you are free to stick with yours.
> 
> dhw: I am much happier with this acknowledgement that it is a matter of opinion than I am with bald statements such as bacteria are automatons / are not conscious / do not think.-I am happy you are happy, but remember, no one can tell and at this time no one can know which of the two decision/opinions are correct.-
> 
> DAVID: I can see why you remain neutral on the source of a thinking mechanism. It is still 'thinking' or the appearance of thinking. Information can not appear de novo for conceptual thought is not material. It is based on information to be analyzed and information to do the analysis.
> 
> dhw: If you believe in the Big Bang, the essence of which is that the universe had a beginning, by definition this has to be information appearing de novo.-Exactly. At issue is the source of that information. Information is not material. It is concepts and instructions.-> dhw: If the first cause is energy endlessly transmuting itself into matter, whether consciously (theistic) or unconsciously (atheistic), information will also constantly be appearing de novo.-You are playing the something-from-nothing game. We can analyze the Standard Model of the particles and see patterns. We literally do not know the underlying information hat creates these patterns of relationship. Put another way, we can understand the lawful relationships of the Standard Model, but we don't know why they have to be that way to begin with. I agree that there is a 'source' that is creating the information, but to expect such complex information to be generated from the amorphous energy plasma at the beginning of the Big Bang is very unreasonable if not totally impossible.-
> dhw: Analysis, however, clearly requires some kind of consciousness (or, as you put it, the information to do the analysis), but when, how, and in what form that consciousness came into being, nobody knows. This last comment applies equally to your God and to living organisms.- Intelligence had to come into being before anything else.From your viewpoint, it came from no where. I'll stick with cause and effect, and IMHO your proposal requires an intelligent first cause. As for bacterial analytic capacity, studies in analytic chemistry show how they do it in being attracted to food from the chemicals given off. X-ray diffraction and biochemical studies show how energy is provided to run the rotors of the flagella. The bi-lipid membranes of the outer surface have fully delineated biochemical processes for engulfing food, and then digesting it. All implanted reactions run from the info in the genome.

What makes life vital

by David Turell @, Friday, March 06, 2015, 14:16 (3549 days ago) @ David Turell

Another example from molecular medical research showing how cells reactions are controlled by specialized molecules. A series of specialized actions by specialized molecules are the source of the 'brainy thoughts' in cells dhw would like to think exist. New research is constantly finding these 'explanatory' molecules for cellular sentience:-"Researchers working with Joachim Spatz discovered that this biochemical and mechanical mechanism controls the herd instinct of cells while they were investigating the movement of skin cells. To this end, they tagged the merlin in the test cells with fluorescent proteins so that they could track its route through the respective cell.-"As the researchers now have a better understanding of how cells move as a group and when they go their own way, this could also result in new approaches in medicine. The findings made by the Stuttgart-based researchers provide clues as to how impairments in wound healing could be eliminated or how the metastasis of tumours could be reduced. They also help developmental biologists in understanding how cells find their intended location in an embryo. After all, such processes are not controlled by magical powers but by the interaction of biochemistry and mechanical forces."
-(my bolding)- Read more at: http://phys.org/news/2015-03-protein-merlin-cell-movement-effective.html#jCp -The basic ID argument is simple: proteins are complex arrangements of large numbers amino acids, which must be in correct sequence and foldings to attain the desired function. In a blind evolutionary process (DARWIN) how did all these specialized molecules get found? The odds are astronomical against it.

What makes life vital

by dhw, Friday, March 06, 2015, 20:27 (3549 days ago) @ David Turell

dhw: I am much happier with this acknowledgement that it is a matter of opinion than I am with bald statements such as bacteria are automatons / are not conscious / do not think.
DAVID: I am happy you are happy, but remember, no one can tell and at this time no one can know which of the two decision/opinions are correct.-Which is a good reason for open-mindedness - and the same of course applies to theism v atheism.-DAVID: Information can not appear de novo for conceptual thought is not material. It is based on information to be analyzed and information to do the analysis.dhw: If you believe in the Big Bang, the essence of which is that the universe had a beginning, by definition this has to be information appearing de novo.-DAVID: Exactly. At issue is the source of that information. Information is not material. It is concepts and instructions.-Information is also data which may be contained within material but need not have been consciously created. It is analysis and use of data that requires some form of consciousness.
 
dhw: If the first cause is energy endlessly transmuting itself into matter, whether consciously (theistic) or unconsciously (atheistic), information will also constantly be appearing de novo.
DAVID: You are playing the something-from-nothing game. -No I'm not. I think you are confusing de novo with ex nihilo. I am following the process whereby every innovation (de novo) has a cause, and the first cause is eternal energy producing new matter. You subscribe to the same first cause, but insist that it is self-aware.-DAVID: I agree that there is a 'source' that is creating the information, but to expect such complex information to be generated from the amorphous energy plasma at the beginning of the Big Bang is very unreasonable if not totally impossible.-You might as well say that it is very unreasonable if not totally impossible for the amorphous energy you call God to have been possessed of all the complex information required to create the complex information resulting from the big bang (if it ever happened). There is no consistency in the argument that energy cannot produce information, and therefore energy must already have had all the information all the time.-dhw: Analysis, however, clearly requires some kind of consciousness (or, as you put it, the information to do the analysis), but when, how, and in what form that consciousness came into being, nobody knows. This last comment applies equally to your God and to living organisms.
DAVID: Intelligence had to come into being before anything else. From your viewpoint, it came from no where. I'll stick with cause and effect....-Another dogmatic statement that has no justification. From my viewpoint intelligence MIGHT have preceded the formation of our material universe (I am an agnostic), and it might have evolved from the interaction between mindless energy and matter. The latter constitutes cause and effect. Your conscious, know-all energy is what came from nowhere. My alternative consciousness came from somewhere. But I find both hypotheses difficult to believe. (I am still an agnostic!) 
 
DAVID: ...and IMHO your proposal requires an intelligent first cause. As for bacterial analytic capacity, studies in analytic chemistry show how they do it in being attracted to food from the chemicals given off. X-ray diffraction and biochemical studies show how energy is provided to run the rotors of the flagella. The bi-lipid membranes of the outer surface have fully delineated biochemical processes for engulfing food, and then digesting it. All implanted reactions run from the info in the genome.-As always you seize on the biological processes, which apply equally to ourselves. There are chemical processes at work when we are attracted to food, when we use energy to move, when we swallow and when we digest. But like ourselves, bacteria communicate, cooperate, take decisions. All these activities require chemical processes that are directed by mental processes, but when it comes to non-human organisms you focus exclusively on the chemicals.-Xxxxxxxxxxxxxxxxxxxxxx-You have done the same with your latest post, which concludes with the quote: “...such processes are not controlled by magical powers but by the interaction of biochemistry and mechanical forces.” Materialists would say exactly the same about our own behaviour, and then you would be up in arms. Of course they may be right - as you have stated at the start of this post: “no one can tell and at this time no one can know which of the two decision/opinions are correct.” The article on the human brain also focuses exclusively on biological processes. The strange thing is that you are not a materialist, and yet you insist on accepting materialism for some organisms, reject it for humans, and hum and haw when it comes to some of our fellow animals.

What makes life vital

by David Turell @, Friday, March 06, 2015, 23:04 (3549 days ago) @ dhw


> DAVID: Exactly. At issue is the source of that information. Information is not material. It is concepts and instructions.
> 
> dhw: Information is also data which may be contained within material but need not have been consciously created. It is analysis and use of data that requires some form of consciousness.-Your statement appears to be a pipe dream. What data are you trying to describe? We can look at a stone and describe it and we have created data in the description. A crystal has organized data in the form of the shape of its lattice work, but that data supplies only a simple information of the structure of the crystal. I am talking about instructional information which DNA supplies. Horse of a very different color. Please describe the 'data' you are referring to.
> 
> dhw: If the first cause is energy endlessly transmuting itself into matter, whether consciously (theistic) or unconsciously (atheistic), information will also constantly be appearing de novo.
> DAVID: You are playing the something-from-nothing game. 
> 
> dhw: No I'm not. I think you are confusing de novo with ex nihilo. I am following the process whereby every innovation (de novo) has a cause, and the first cause is eternal energy producing new matter. You subscribe to the same first cause, but insist that it is self-aware.-I'm not confused. I fully believe in a first cause, nothing ex nihilo, because nothing can come from nothing.
> 
> dhw; You might as well say that it is very unreasonable if not totally impossible for the amorphous energy you call God to have been possessed of all the complex information required to create the complex information resulting from the big bang (if it ever happened). There is no consistency in the argument that energy cannot produce information, and therefore energy must already have had all the information all the time.-I will emphatically declare energy by itself cannot produce instructional information. Only a mind can. Life requires instructions.-> DAVID: Intelligence had to come into being before anything else. From your viewpoint, it came from no where. I'll stick with cause and effect....
> 
> Another dogmatic statement that has no justification. From my viewpoint intelligence MIGHT have preceded the formation of our material universe (I am an agnostic), and it might have evolved from the interaction between mindless energy and matter.-Mindless energy and matter cannot produce instructional information. Yes, dogmatic, and supported by many philosophers. 
> 
> As always you seize on the biological processes, which apply equally to ourselves. There are chemical processes at work when we are attracted to food, when we use energy to move, when we swallow and when we digest. But like ourselves, bacteria communicate, cooperate, take decisions. All these activities require chemical processes that are directed by mental processes, but when it comes to non-human organisms you focus exclusively on the chemicals.-Yes, because they cannot think.
> 
> Xxxxxxxxxxxxxxxxxxxxxx
> 
> dhw: You have done the same with your latest post, which concludes with the quote: “...such processes are not controlled by magical powers but by the interaction of biochemistry and mechanical forces.” Materialists would say exactly the same about our own behaviour, and then you would be up in arms..... The strange thing is that you are not a materialist, and yet you insist on accepting materialism for some organisms, reject it for humans, and hum and haw when it comes to some of our fellow animals.-Much of our body works in a materialistic way. I've described that with my reference to the kidney and liver. My response is graded by the complexity of the evolutionary ladder. Bacteria do not think. Cambrian animals had a degree of mentation, primates more so, and humans a huge jump beyond. Progressive complexity of the nervous system and of brains.

What makes life vital

by dhw, Saturday, March 07, 2015, 19:57 (3548 days ago) @ David Turell

DAVID: Information is not material. It is concepts and instructions.
dhw: Information is also data which may be contained within materials but need not have been consciously created. 
DAVID: Your statement appears to be a pipe dream. [...] We can look at a stone and describe it and we have created data in the description. [...] I am talking about instructional information which DNA supplies. Horse of a very different color. Please describe the 'data' you are referring to.-You have already described it. Data (something given) are facts. The composition, age, provenance etc. of the stone is information which would be there with or without an observer, but it takes consciousness to perceive, name, analyse and use it. You are trying to restrict the term “information” to instructions, so that you can ask who gave the instructions (answer: God). But information does not consist only of instructions. An atheist can say that all the information needed for life was contained in unconscious materials which luckily assembled themselves into a life-giving form, and that, through time and experience, evolved its own increasingly complex "instructional information" - a hypothesis no less miraculous than that of a universal, eternal, self-aware, unified form of energy inexplicably possessed of all the “instructional information” needed to create life and the universe. You see the improbability of the one and refuse to see that of the other. -dhw: If the first cause is energy endlessly transmuting itself into matter, whether consciously (theistic) or unconsciously (atheistic), information will also constantly be appearing de novo.
DAVID: You are playing the something-from-nothing game. 
dhw: I think you are confusing de novo with ex nihilo. [...] 
DAVID: I'm not confused. I fully believe in a first cause, nothing ex nihilo, because nothing can come from nothing.-I believe that too. And so I don't understand why you think innovation proceeding from interaction between energy and matter constitutes something from nothing.-DAVID: Mindless energy and matter cannot produce instructional information. Yes, dogmatic, and supported by many philosophers.-Instructional information is a loaded term, as explained above, but if you mean that only a mind could produce the information necessary for life and the universe,your claim is rejected by all those philosophers who claim there is no such thing as a universal mind! So philosophy won't help us. But if you insist that “instructional information” requires a mind, then the instructional cooperation, communication and decision-making carried out by bacteria show that they have “minds”! You can't have it both ways.-DAVID: Much of our body works in a materialistic way. I've described that with my reference to the kidney and liver. My response is graded by the complexity of the evolutionary ladder. Bacteria do not think. Cambrian animals had a degree of mentation, primates more so, and humans a huge jump beyond. Progressive complexity of the nervous system and of brains.-Agreed, apart from your dogmatic refusal to acknowledge the possibility that bacteria do think. But if you attribute thought to progressive material complexity, what happened to your dualism?

What makes life vital

by David Turell @, Saturday, March 07, 2015, 20:22 (3548 days ago) @ dhw


> Dhw:... but it takes consciousness to perceive, name, analyse and use it. You are trying to restrict the term “information” to instructions, so that you can ask who gave the instructions (answer: God). But information does not consist only of instructions.-True enough, but I'm trying to point out two types of information: descriptive and instructive. DNA has both but only the instructive runs life.-> dhw: An atheist can say that all the information needed for life was contained in unconscious materials which luckily assembled themselves into a life-giving form, and that, through time and experience, evolved its own increasingly complex "instructional information" - a hypothesis no less miraculous than that of a universal, eternal, self-aware, unified form of energy inexplicably possessed of all the “instructional information” needed to create life and the universe. You see the improbability of the one and refuse to see that of the other.-I don't care what atheists can conjure up as an excuse for life. Only mentation can create the instructions. You constantly refuse to allow for that as the prime consideration, and try to balance your agnosticism by bringing up chance. 
> 
> dhw; But if you insist that “instructional information” requires a mind, then the instructional cooperation, communication and decision-making carried out by bacteria show that they have “minds”! You can't have it both ways.-Yes I can. No one can distinguish, from the outside of bacteria, between automatism run by complete instructions or some type of mental process without neurons to process it. There is no avoiding that observation. You know what side I take
> 
> DAVID: Much of our body works in a materialistic way. I've described that with my reference to the kidney and liver. My response is graded by the complexity of the evolutionary ladder. Bacteria do not think. Cambrian animals had a degree of mentation, primates more so, and humans a huge jump beyond. Progressive complexity of the nervous system and of brains.
> 
> dhw: Agreed, apart from your dogmatic refusal to acknowledge the possibility that bacteria do think. But if you attribute thought to progressive material complexity, what happened to your dualism?-I'm not avoiding dualism at all. It takes neuronal complexity to allow consciousness to emerge as the brain acts as a receiver.

What makes life vital

by dhw, Monday, March 09, 2015, 09:57 (3547 days ago) @ David Turell

dhw: I would like to highlight what Tony says, because it is so important: “It is not that they can't explain the machinery, it's that they can't explain the spark.” And I would apply that both to life and to thought, with emphasis on the fact that scientists can explain the machinery by which organisms operate, but they cannot explain the cognitive, decision-making, communicative skills of those organisms, ranging from the simplest to the most complex.
DAVID: I fully understand the point. That is why I said life is a continuum. Once it appeared with all of its magical properties it has continued to make life in different forms. The 'spark', as were the instructions (information), were given in a miraculous beginning. As long as life can maintain itself by reproducing itself it will continue. If that continuum is stopped, it will take another miracle to start it again. This is why I am a believer.-I expect most believers and non-believers would agree with every word of this. Life will go on until it stops, and it is indeed a miracle, whatever may have been its source: God, chance, panpsychist evolution. But you don't seem to have fully understood my own point that science can explain the machinery by which thought is transmuted into action, but it cannot explain thought. That is why your attempts to automatize cells by describing their machinery seem to me to “miss the mark”.-dhw: An atheist can say that all the information needed for life was contained in unconscious materials which luckily assembled themselves into a life-giving form, and that, through time and experience, evolved its own increasingly complex "instructional information" - a hypothesis no less miraculous than that of a universal, eternal, self-aware, unified form of energy inexplicably possessed of all the “instructional information” needed to create life and the universe. You see the improbability of the one and refuse to see that of the other.-DAVID: I don't care what atheists can conjure up as an excuse for life. Only mentation can create the instructions. You constantly refuse to allow for that as the prime consideration, and try to balance your agnosticism by bringing up chance.
-I should have written “a hypothesis no more miraculous”, not “no less”. It is not THE prime consideration but one of the prime considerations. You don't care about the illogicality of the argument that life and thought can only be created by a mind, but the mind that created them did not have to be created. You try to balance your theism by closing your eyes to the fact that belief in chance and belief in God BOTH run counter to reason. That is why we use the word “faith”.
 
dhw; But if you insist that “instructional information” requires a mind, then the instructional cooperation, communication and decision-making carried out by bacteria show that they have “minds”! You can't have it both ways.
DAVID: Yes I can. No one can distinguish, from the outside of bacteria, between automatism run by complete instructions or some type of mental process without neurons to process it. There is no avoiding that observation. You know what side I take. -Materialists can argue that the same applies to humans, but you athletically leap over that fence when you come to it. If other organisms behave as if they are intelligent, and many researchers tell us they are, why insist they are not? Why not keep an open mind?-DAVID: Much of our body works in a materialistic way. I've described that with my reference to the kidney and liver. My response is graded by the complexity of the evolutionary ladder. Bacteria do not think. Cambrian animals had a degree of mentation, primates more so, and humans a huge jump beyond. Progressive complexity of the nervous system and of brains.
dhw: Agreed, apart from your dogmatic refusal to acknowledge the possibility that bacteria do think. But if you attribute thought to progressive material complexity, what happened to your dualism?-DAVID: I'm not avoiding dualism at all. It takes neuronal complexity to allow consciousness to emerge as the brain acts as a receiver.-When people say consciousness “emerges”, they usually mean that it is produced by the interplay between the neurons. If consciousness exists independently and the brain is a receiver and not a transmitter, the progressive complexity of the nervous system and of brains is the RESULT of increasingly complex consciousness, not the producer. Is that what you mean?

What makes life vital

by David Turell @, Tuesday, March 10, 2015, 00:05 (3546 days ago) @ dhw


> dhw:you don't seem to have fully understood my own point that science can explain the machinery by which thought is transmuted into action, but it cannot explain thought. That is why your attempts to automatize cells by describing their machinery seem to me to “miss the mark”.-I know that science can tell us how thoughts are made by cells, and I know that certain motor areas of the brain control muscular action. In my version of free will my conscious mind tells my brain to move my arm and it does. My brain automatically responds to my wishes. What is your point? I'm right on the mark.-> 
> dhw: You don't care about the illogicality of the argument that life and thought can only be created by a mind, but the mind that created them did not have to be created. You try to balance your theism by closing your eyes to the fact that belief in chance and belief in God BOTH run counter to reason. That is why we use the word “faith”.-You are using faith in my case in the wrong way. I see no other logical explanation for the universe and life than a planning mind. That is my logical conclusion. I have 'faith' in my reasoning that I am right. Then secondarily I accept faith in God. Just as I try not to interpret God's personality, I keep Him at a slight distance compared to reverential religious folk.
> 
> dhw: If other organisms behave as if they are intelligent, and many researchers tell us they are, why insist they are not? Why not keep an open mind? -Because the odds are 50/50 I am right, and I've reached this conclusion and will stick to it. Bacteria act intelligently because they follow intelligent instructions. I quote from Shapiro:-"The contemporary view of cell information processing...makes the point that DNA cannot do anything or direct anything by itself; it must interact with other cell molecules. So all genomic action is subject to the inputs and information-processing networks we know operate in living cells."- These networks are all molecular interactions. Nowhere in his book does he have a subject called cell thinking. Instead:-"The best we can do right now is to recognize that cells use many kinds of molecular interactions to process information and execute appropriate decisions." I haven't met a thinking protein molecule yet. They are thousands of atoms strung together to make a functional molecule. Those functional molecules interplay with DNA to achieve results, some of which are epigenetic changes in DNA, the thrust of his research. His thoughts and mine are NOT in opposition.-> 
> dhw: When people say consciousness “emerges”, they usually mean that it is produced by the interplay between the neurons. If consciousness exists independently and the brain is a receiver and not a transmitter, the progressive complexity of the nervous system and of brains is the RESULT of increasingly complex consciousness, not the producer. Is that what you mean?-The concept of receiving consciousness arises from the discovery that NDE's demonstrate consciousness independent of a living brain. The theory is really a form of dualism. I am sure the extreme complexity of our brain, as compared to lower animals, results in a much more complex form of consciousness, which we certainly have. Under this thought, there is a universal consciousness 'out there' with lower and higher levels that can be 'received' by the brain at its current level of complexity (or "receivingness"). Since I believe as God, the universal consciousness, it all fits with my way of looking at things.

What makes life vital

by dhw, Tuesday, March 10, 2015, 19:30 (3545 days ago) @ David Turell

dhw: ...science can explain the machinery by which thought is transmuted into action, but it cannot explain thought. That is why your attempts to automatize cells by describing their machinery seem to me to “miss the mark”.
DAVID: I know that science can tell us how thoughts are made by cells, and I know that certain motor areas of the brain control muscular action. In my version of free will my conscious mind tells my brain to move my arm and it does. My brain automatically responds to my wishes. What is your point? I'm right on the mark.-If any scientist could tell us how thoughts are “made” by cells, he would deserve a dozen Nobel Prizes. You have distinguished between your conscious mind, your brain, and the rest of your body. Many leading scientists claim that cells/cell communities think for themselves, i.e. their equivalent of a “conscious mind” tells the rest of the cell/cell community what to do. The rest of the cell/cell community automatically responds to its wishes. Scientists can trace the responses to, but not the source of the instructions. That is the mark I think you are missing.-dhw: If other organisms behave as if they are intelligent, and many researchers tell us they are, why insist they are not? Why not keep an open mind? 
DAVID: Because the odds are 50/50 I am right, and I've reached this conclusion and will stick to it. Bacteria act intelligently because they follow intelligent instructions.-So do we. And according to you “we” issue those instructions. But according to you bacteria do not. God had to preprogramme every single instruction from the very beginning of life, or he had to intervene to solve new problems. In any case, I cannot think of a better reason for open-mindedness than odds of 50/50.-DAVID: I quote from Shapiro:
"The contemporary view of cell information processing...makes the point that DNA cannot do anything or direct anything by itself; it must interact with other cell molecules. So all genomic action is subject to the inputs and information-processing networks we know operate in living cells."-Of course it must interact with other cell molecules, just as our brain interacts with the rest of our body or - if your dualistic approach is correct - our conscious mind interacts with our brain and the rest of our body. These “inputs and information-processing networks” apply just as much as to us as they do to bacteria.-DAVID: These networks are all molecular interactions. Nowhere in his book does he have a subject called cell thinking. Instead:
"The best we can do right now is to recognize that cells use many kinds of molecular interactions to process information and execute appropriate decisions." 
I haven't met a thinking protein molecule yet. [...] His thoughts and mine are NOT in opposition.-We also use many kinds of molecular interactions to process information and execute appropriate decisions, but we must distinguish between automatic molecular interactions and the intelligence that guides them. Shapiro's statements are not confined to the book you have read (and the concept of cellular intelligence is not confined to Shapiro). I have already quoted the following: “...Not only are we no longer at the physical center of the universe; our status as the only sentient beings on the planet is dissolving as we learn more about how smart even the smallest living cells can be.”-Bacteria are small but not stupid: Cognition, natural ... - CiteSeer-http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.371.1320&rep=rep1&type=pdf-And in the discussion referred to under “Bacterial Intelligence”, he concluded his account of how cells take appropriate action with the remark: “And if that isn't self awareness I don't know what is.”-dhw: You don't care about the illogicality of the argument that life and thought can only be created by a mind, but the mind that created them did not have to be created. You try to balance your theism by closing your eyes to the fact that belief in chance and belief in God BOTH run counter to reason. That is why we use the word “faith”.
DAVID: You are using faith in my case in the wrong way. I see no other logical explanation for the universe and life than a planning mind. That is my logical conclusion. I have 'faith' in my reasoning that I am right. Then secondarily I accept faith in God. Just as I try not to interpret God's personality, I keep Him at a slight distance compared to reverential religious folk.-That is a fair comment. The difference between us, as you will have gathered over the last eight years (!), is that I am not prepared to stop at the design argument.

What makes life vital

by Balance_Maintained @, U.S.A., Saturday, March 07, 2015, 05:13 (3549 days ago) @ David Turell

David: The other issue in live and dead animals is the availability of the information in the genome. This is really what creates life. The animal is dead because it can no longer access the life-running information. All the processes are stopped. In resuscitation failed organs (heart and brain) are supported until they can reacquire access to the information that runs life. Look at this quote:->David: I couldn't say it better. The emergence of life from the materials in living beings is due to the information in the codes of the genome and in all the modifiers of the genome complex. The Darwin folks seem very reluctant to get into the information issue, because recognition of the importance of that information is a direct threat to a mechanistic chance process of evolution being the correct interpretation. -
I know I am hit or miss on this conversation with my schedule lately, but I think you kind of missed the mark here. Information does not create life any more than the mechanical processes do. Even if you had all of the information, and all of the necessary mechanics in place, you would still have nothing but a corpse. Without that penultimate 'spark' of life, our bio-mechanical machinery is not alive. That is ultimately where all of the reductionalist/naturalist theories fail. It is not that they can't explain the machinery, it's that they can't explain the spark.

--
What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.

What makes life vital

by David Turell @, Saturday, March 07, 2015, 05:45 (3549 days ago) @ Balance_Maintained

tony: Information does not create life any more than the mechanical processes do. Even if you had all of the information, and all of the necessary mechanics in place, you would still have nothing but a corpse. Without that penultimate 'spark' of life, our bio-mechanical machinery is not alive. That is ultimately where all of the reductionalist/naturalist theories fail. It is not that they can't explain the machinery, it's that they can't explain the spark.-I agree with you in that technically a corpse still contains all the information that created life, but a corpse cannot read that information and therefore is dead. The 'spark' comes from the union of sperm and egg, which is two living items coming from two living sources. Thus life begets life and it is a continuum. The 'spark', as you put it, began 3.6-3.8 billion years ago and is not extinguished as yet. That is the true concept. Life appeared and hasn't left, and chance can't create that 'spark'. And the current so-called research into the OOL is doomed to failure, because human scientists can put together the chemicals, as Tony points out, but life will not appear. Still the same old rule. Only life makes life.

What makes life vital

by dhw, Saturday, March 07, 2015, 20:02 (3548 days ago) @ David Turell

Tony: Information does not create life any more than the mechanical processes do. Even if you had all of the information, and all of the necessary mechanics in place, you would still have nothing but a corpse. Without that penultimate 'spark' of life, our bio-mechanical machinery is not alive. That is ultimately where all of the reductionalist/naturalist theories fail. It is not that they can't explain the machinery, it's that they can't explain the spark.-DAVID: I agree with you in that technically a corpse still contains all the information that created life, but a corpse cannot read that information and therefore is dead. The 'spark' comes from the union of sperm and egg, which is two living items coming from two living sources. Thus life begets life and it is a continuum. The 'spark', as you put it, began 3.6-3.8 billion years ago and is not extinguished as yet. That is the true concept. Life appeared and hasn't left, and chance can't create that 'spark'. And the current so-called research into the OOL is doomed to failure, because human scientists can put together the chemicals, as Tony points out, but life will not appear. Still the same old rule. Only life makes life.
-Tony began by saying he thought you had missed the mark, and the argument that life begets life still doesn't explain life, any more than the union of sperm and egg explains life. I would like to highlight what Tony says, because it is so important: “It is not that they can't explain the machinery, it's that they can't explain the spark.” And I would apply that both to life and to thought, with emphasis on the fact that scientists can explain the machinery by which organisms operate, but they cannot explain the cognitive, decision-making, communicative skills of those organisms, ranging from the simplest to the most complex.

What makes life vital

by David Turell @, Saturday, March 07, 2015, 20:10 (3548 days ago) @ dhw


> dhw: Tony began by saying he thought you had missed the mark, and the argument that life begets life still doesn't explain life, any more than the union of sperm and egg explains life. I would like to highlight what Tony says, because it is so important: “It is not that they can't explain the machinery, it's that they can't explain the spark.” And I would apply that both to life and to thought, with emphasis on the fact that scientists can explain the machinery by which organisms operate, but they cannot explain the cognitive, decision-making, communicative skills of those organisms, ranging from the simplest to the most complex.-I fully understand the point. That is why I said life is a continuum. Once it appeared with all of its magical properties it has continued to make life in different forms. The 'spark', as were the instructions (information), were given in a miraculous beginning. As long as life can maintain itself by reproducing itself it will continue. If that continuum is stopped, it will take another miracle to start it again. This is why I am a believer.

What makes life vital

by David Turell @, Saturday, September 26, 2015, 14:48 (3346 days ago) @ David Turell

Life comes only from life. This is strongly pointed out in the way research is done with DNA. Enzymes have been found in bacteria which cut DNA open to delete or insert sections. This helps uncover the function of an area of DNA whether a gene or a modifying segment. Remember, scientists did not invent those enzymes. We can only work with what life offers:-http://www.sciencedaily.com/releases/2015/09/150925131512.htm-"We were thrilled to discover completely different CRISPR enzymes that can be harnessed for advancing research and human health," Zhang said.-"The newly described Cpf1 system differs in several important ways from the previously described Cas9, with significant implications for research and therapeutics, as well as for business and intellectual property:-•First: In its natural form, the DNA-cutting enzyme Cas9 forms a complex with two small RNAs, both of which are required for the cutting activity. The Cpf1 system is simpler in that it requires only a single RNA. The Cpf1 enzyme is also smaller than the standard SpCas9, making it easier to deliver into cells and tissues.-•Second, and perhaps most significantly: Cpf1 cuts DNA in a different manner than Cas9. When the Cas9 complex cuts DNA, it cuts both strands at the same place, leaving 'blunt ends' that often undergo mutations as they are rejoined. With the Cpf1 complex the cuts in the two strands are offset, leaving short overhangs on the exposed ends. This is expected to help with precise insertion, allowing researchers to integrate a piece of DNA more efficiently and accurately.-•Third: Cpf1 cuts far away from the recognition site, meaning that even if the targeted gene becomes mutated at the cut site, it can likely still be re-cut, allowing multiple opportunities for correct editing to occur.-•Fourth: the Cpf1 system provides new flexibility in choosing target sites. Like Cas9, the Cpf1 complex must first attach to a short sequence known as a PAM, and targets must be chosen that are adjacent to naturally occurring PAM sequences. The Cpf1 complex recognizes very different PAM sequences from those of Cas9. This could be an advantage in targeting some genomes, such as in the malaria parasite as well as in humans."-Comment: As usual living matter presents itself as a very complex system, which we have learned to manipulate, but I doubt if we very bright humans could have invented it in its current state. So do you believe we can discover how 'simple' first life formed? Are you kidding?

What makes life vital

by romansh ⌂ @, Saturday, September 26, 2015, 18:27 (3345 days ago) @ David Turell

Life comes from star dust

What makes life vital

by romansh ⌂ @, Saturday, September 26, 2015, 21:00 (3345 days ago) @ romansh

http://www.science20.com/stars_planets_life/calculating_odds_life_could_begin_chance-> The results were amazing. After only 4 rounds of selection and amplification they began to see an increase in catalytic activity, and after 10 rounds the rate was 7 million times faster than the uncatalyzed rate. It was even possible to watch the RNA evolve.

What makes life vital

by David Turell @, Sunday, September 27, 2015, 14:15 (3345 days ago) @ romansh

Romansh: http://www.science20.com/stars_planets_life/calculating_odds_life_could_begin_chance&am... 
> > The results were amazing. After only 4 rounds of selection and amplification they began to see an increase in catalytic activity, and after 10 rounds the rate was 7 million times faster than the uncatalyzed rate. It was even possible to watch the RNA evolve.-Nice try. You've picked out a line from an article I know well and have used in my books. I'm referring to this study in the column you presented:-"Now I will recall a classic experiment by David Bartel and Jack Szostak, published in Science in 1993. Their goal was to see if a completely random system of molecules could undergo selection in such a way that defined species of molecules emerged with specific properties. They began by synthesizing many trillions of different RNA molecules about 300 nucleotides long, but the nucleotides were all random nucleotide sequences."-Started with trillions of possibilities!!!-Then used electrophoresis:-"Nucleic acids can be separated and visualized by a technique called gel electrophoresis. The mixture is put in at the top of a gel held between two glass plates and a voltage is applied. Small molecules travel fastest through the gel, and larger molecules move more slowly, so they are separated."-You left this out purposefully. Was such an apparatus present 3.6 billion years ago?-From the article:-"Bartel and Szostak's results have been repeated and extended by other researchers, and they demonstrate a fundamental principle of evolution at the molecular level. At the start of the experiment, every molecule of RNA was different from all the rest because they were assembled by a chance process. There were no species, just a mixture of trillions of different molecules. But then a selective hurdle was imposed, a ligation reaction that allowed only certain molecules to survive and reproduce enzymatically."-Conclusion for wishful thinking atheists: What is described is intelligent design in laboratories, nothing more. Where do all the nucleotides and polymerizing enzymes on early Earth come from? And so far from the lab research done to date, no ribozyme developed in a lab can reproduce with the accuracy of life on Earth today. and without that accuracy there is no life!

What makes life vital

by romansh ⌂ @, Sunday, September 27, 2015, 16:45 (3344 days ago) @ David Turell

Then used electrophoresis:-Are you suggesting the phenomena of electrophoresis did not exist about 4 billion years ago? If you are that would be vey foolish of you, David. Now there are other phenomena that might "select" unintelligently. This argument is like saying self sustaining nuclear fission reactors exist today on Earth because of intelligent design, they could not possibly have existed 1.8 billion years ago on Earth because of chance.
 
> You left this out purposefully. Was such an apparatus present 3.6 billion years ago?
I left the link for people to evaluate the context for themselves.
Oklo - https://en.wikipedia.org/wiki/Natural_nuclear_fission_reactor
 
> Conclusion for wishful thinking atheists: What is described is intelligent design in laboratories, nothing more. Where do all the nucleotides and polymerizing enzymes on early Earth come from? And so far from the lab research done to date, no ribozyme developed in a lab can reproduce with the accuracy of life on Earth today. and without that accuracy there is no life!-My personal conclusion is that intelligent design theists don't really understand the issues surrounding chance and selection.-They conflate chance and random and see selection being impossible without a designer. I will admit disbelievers don't help by using random and chance interchangeably.

What makes life vital

by David Turell @, Sunday, September 27, 2015, 17:38 (3344 days ago) @ romansh

David: Then used electrophoresis:
> 
> Romansh:Are you suggesting the phenomena of electrophoresis did not exist about 4 billion years ago? If you are that would be vey foolish of you, David. Now there are other phenomena that might "select" unintelligently. This argument is like saying self sustaining nuclear fission reactors exist today on Earth because of intelligent design, they could not possibly have existed 1.8 billion years ago on Earth because of chance.-This is the weirdest response. Electrophoresis is a recent manmade tool. Nuclear fission can be a natural event.
> 
> > David: You left this out purposefully. Was such an apparatus present 3.6 billion years ago?
> Romansh: I left the link for people to evaluate the context for themselves.-As I did.
> 
> Romansh: My personal conclusion is that intelligent design theists don't really understand the issues surrounding chance and selection.
> 
> They conflate chance and random and see selection being impossible without a designer. I will admit disbelievers don't help by using random and chance interchangeably.-I understand that improbable events occur all the time. I observe them regularly. That doesn't mean my comments were wrong. You didn't answer them directly, which to me is your usual sidestep.

What makes life vital

by romansh ⌂ @, Monday, September 28, 2015, 00:52 (3344 days ago) @ David Turell

This is the weirdest response. Electrophoresis is a recent manmade tool. Nuclear fission can be a natural event.
Ah I got it ... it took mankind to get a scientific education before chemicals first moved through colloids in an electrical field.-> As I did.
But I did not accuse you of purposefully omitting relevant data.-> I understand that improbable events occur all the time. I observe them regularly. That doesn't mean my comments were wrong. You didn't answer them directly, which to me is your usual sidestep.
So what is the difference between chance and random?

What makes life vital

by David Turell @, Monday, September 28, 2015, 01:17 (3344 days ago) @ romansh

romansh: Ah I got it ... it took mankind to get a scientific education before chemicals first moved through colloids in an electrical field.-Exactly how did this happen on early Earth? In the sea where it is likely life began.-> Romansh: So what is the difference between chance and random?-Is there a difference? I am not well-educated in statistics. I view both as uncontrolled or not prearranged but in a chain of cause and effect.

What makes life vital

by David Turell @, Sunday, September 27, 2015, 01:51 (3345 days ago) @ romansh

Romansh: Life comes from star dust-Of course the necessary elements come from star dust, but no one in the origin of life lab industry can do much without pieces of the genome.

What makes life vital; each part is not alive

by David Turell @, Thursday, April 30, 2020, 00:29 (1668 days ago) @ David Turell

It is a series of functional relationships:

https://evolutionnews.org/2020/04/the-parts-of-cells-dont-explain-the-origin-of-cells/

"Here is a paper that should be in the files of everyone thinking about biological design. It is Peter Tompa and George Rose’s “The Levinthal Paradox of the Interactome” (2011), from the journal Protein Science.

***

"Starting with basic facts about cell biology, Tompa and Rose explain that the parts of cells do not explain the origin of cells. To understand the origin of cells, one must focus on the functional interrelations of those parts, which relations occupy the very tiny space of “alive” in the incomprehensibly larger space of “not alive.”

***

"Any relation or interaction within a cell is not a material object. It is not a part or a thing. The relations that matter to the living state are functions, and, while requiring material parts, the functions cannot be reduced to those parts. Relations are inherently higher-level properties. Tompa and Rose argue that the space of possible interrelations that fail to yield the living state is so much larger than the tiny neighborhood of “alive” that, if the living state is disrupted, the parts of the cell will never find their way back to that state. Instead they embark on a one-way or irreversible random walk out into the universe of not-alive. This is why a bacterium whose membrane or cell wall is disrupted by sonication in a sterile buffer will never come back to life — even though, at that moment, all the molecular parts (DNA, RNA, ribosomes, proteins, lipids, etc.) are co-present in the same microenvironment.

"The essential relations have been lost, irretrievably. The living state, a system of relations, presupposes material things. It is not, however, a material thing itself, and cannot be reduced to materiality. Thus, the bottom-up approach to the origin of life cannot possibly succeed, because it is committed to a category error (i.e., error = the parts of a system are causally primary). Category errors do not yield to further effort. (my bold)

***

"Note carefully: Tompa and Rose do not themselves support a design view of the origin of life. They argue that some unknown, incremental pathway assembled cells: “Presumably, early‐earth life forms originated through an accumulation of changes of ever increasing complexity” (p. 2077). But their interactome analysis does not explain how that pathway would have been traversed, without design – only that (as noted above) having the parts on hand will not yield a cell.

***

"Einstein, in a famous 1918 letter to his friend Michele Besso, put the general epistemological point this way (quoted by Gerald Holton, emphasis added):

…"a theory which wishes to deserve trust must be built upon generalizable facts. Old examples: Chief postulates of thermodynamics [based] on impossibility of perpetuum mobile. Mechanics [based] on grasped [ertasteten] law of inertia. Kinetic gas theory [based] on equivalence of heat and mechanical energy (also historically). Special Relativity on the constancy of light velocity and Maxwell’s equation for the vacuum, which in turn rest on empirical foundations. Relativity with respect to uniform [?] translation is a fact of experience. General [Relativity]: Equivalence of inertial and gravitational mass. Never has a truly useful and deep-going theory really been found purely speculatively."

Comment: Darwinism is purely speculation, although he used some generalizable facts that were true to this day. Darwin was wise not to attempt origin-of-life speculation in view of this definition of life. Tompa and Rose make the full case for design and refuse to follow it to the logical conclusion. I believe this is because religions have contaminated human thinking about the non-human greater power that must exist.

What makes life vital; each part is not alive

by dhw, Thursday, April 30, 2020, 15:44 (1667 days ago) @ David Turell

"What makes life vital; each part is not alive"

QUOTE: "Starting with basic facts about cell biology, Tompa and Rose explain that the parts of cells do not explain the origin of cells. To understand the origin of cells, one must focus on the functional interrelations of those parts, which relations occupy the very tiny space of “alive” in the incomprehensibly larger space of “not alive.”

I’m sorry, but the bold is all we need to know. The rest of the article, including the fact that the parts are interrelated, tells us absolutely nothing about what makes life “vital” or about the origin of cells.

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