Origin of Life: information? (Introduction)
by David Turell , Friday, December 14, 2012, 00:45 (4364 days ago)
edited by unknown, Friday, December 14, 2012, 01:04
Paul Davies, the theoretical quantum physicist wants to start with information. How does that work? But he has given up on chemsitry alone and doesn't really point out where the info comes from at the beginning. First cause is now info?-http://www.sciencedaily.com/releases/2012/12/121212205918.htm-The chemistry approach: Organic chemistry is hard to create.--'Creating life from scratch requires two abilities: fixing carbon and making more of yourself. The first, essentially hitching carbon atoms together to make living matter, is a remarkably difficult feat. Carbon dioxide (CO2), of which Earth has plenty, is a stable molecule; the bonds are tough to break, and a chemical system can only turn carbon into biologically useful compounds by way of some wildly unstable in-between stages. As hard as it is to do, fixing carbon is necessary for life. A carbon molecule's ability to bond stably with up to four atoms makes it phenomenally versatile, and its abundance makes it suitable as a backbone for trillions of compounds. Once an organized chemical system can harness and manipulate carbon, it can expand and innovate in countless ways. In other words, carbon fixation is the centerpiece of metabolism ... the basic process by which cells take in chemicals from their environments and build them into products they need to live. It's also the link between the geochemistry of Earth and the biochemistry of life"-"Carbon fixing and other chemical sub-processes that together constitute metabolism each comprise dozens of steps; some are quick and easy turnkey reactions with simple molecules, others require highly specific chemical helpers, or catalysts. The parts of metabolism that guide carbon fixation through its unstable intermediate stages fall into the latter category, requiring help. But these seemingly unlikely reactions are remarkably consistent across all living systems. In fact, says Braakman, their ubiquity and the difficulty with which they are forged make them the chemical constraints within which all living systems operate ... in a sense, the scaffolding for the tree of life. It's these dependable regularities of hierarchy and modularity, amid the panoply of reactions comprising metabolism, that stabilize the system and enable its complexity."- Read more at: http://phys.org/news/2012-12-life-inevitable-paper-pieces-metabolism.html#jCp
Origin of Life: zinc
by David Turell , Monday, December 24, 2012, 15:52 (4353 days ago) @ David Turell
What was available in early oceans to help develop life? Why wee eukaryotes so delayed in appearance?-http://phys.org/news/2012-12-views-evolution-early-life.html
Origin of Life: chemical cycles
by David Turell , Thursday, December 27, 2012, 14:57 (4350 days ago) @ David Turell
Inorganic chemical cycles are rare. Organic molecular cycles are common. But how do you get from inorganic Earth to organic chemistry cycles to start life? No one knows. Reason for cycles: they continuously work. Life is continuity. Leslie Orgel, one of the leading OOL researchers concluded below: (I particularly like his if pigs could fly comment about most of the OOL proposals!)-The demonstration of the existence of a complex, nonenzymatic metabolic cycle, such as the reverse citric acid, would be a major step in research on the origin of life, while demonstration of an evolving family of such cycles would transform the subject. In view of the importance of the topic, it is essential to subject metabolist proposals to the same kind of detailed examination and criticism that has rightly been applied to genetic theories [29,30]. In the case of these latter theories, an appraisal of their plausibility can be based on a substantial body of experimental work. In the case of the former, because little experimental work has been attempted, appraisal must be based on chemical plausibility. Almost all proposals of hypothetical metabolic cycles have recognized that each of the steps involved must occur rapidly enough for the cycle to be useful in the time available for its operation. It is always assumed that this condition is met, but in no case have persuasive supporting arguments been presented. Why should one believe that an ensemble of minerals that are capable of catalyzing each of the many steps of the reverse citric acid cycle was present anywhere on the primitive Earth [8], or that the cycle mysteriously organized itself topographically on a metal sulfide surface [6]? The lack of a supporting background in chemistry is even more evident in proposals that metabolic cycles can evolve to "life-like" complexity. The most serious challenge to proponents of metabolic cycle theories—the problems presented by the lack of specificity of most nonenzymatic catalysts—has, in general, not been appreciated. If it has, it has been ignored. Theories of the origin of life based on metabolic cycles cannot be justified by the inadequacy of competing theories: they must stand on their own. The situation with respect to chemical cycles unrelated to those involved in contemporary metabolism is different. At least one well-established autocatalytic cycle, the core of the formose reaction, is understood reasonably well [1,18] and, as discussed previously, there is experimental support for the existence of one or two other simple cycles [2,3]. This suggests that there may be more cycles to be discovered, and they could be relevant to the origin of life. The recognition of sequences of plausible reactions that could close a cycle is an essential first step toward the discovery of new cycles, but experimental proof that such cycles are stable against the challenge of side reactions is even more important. Proposals involving complex metabolisms that are stable even in the absence of informational polymers usually are linked to the context of hydrothermal synthesis in the deep sea vents or some equivalent environment. Such linkage, however, need not be an essential feature of these theories [31]. A metabolist theory based on the self-organization of the Calvin cycle, for example, would be a logical possibility, although not necessarily an attractive one. Conversely, a theory in which metal sulfide...catalyzed reactions provided some or all of the organic molecules needed for the formation of a primitive genetic system would have many attractive features. A number of prebiotic syntheses catalyzed by transition metal sulfides under hydrothermal conditions have already been reported [16,17], and this is now an active area of research. It is important to realize that recognition of the possible importance of prebiotic syntheses that could occur hydrothermally does not necessitate a belief in their ability to self-organize. The prebiotic syntheses that have been investigated experimentally almost always lead to the formation of complex mixtures. Proposed polymer replication schemes are unlikely to succeed except with reasonably pure input monomers. No solution of the origin-of-life problem will be possible until the gap between the two kinds of chemistry is closed. Simplification of product mixtures through the self-organization of organic reaction sequences, whether cyclic or not, would help enormously, as would the discovery of very simple replicating polymers. However, solutions offered by supporters of geneticist or metabolist scenarios that are dependent on "if pigs could fly" hypothetical chemistry are unlikely to help. _ http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0060018
Origin of Life: flying pigs
by David Turell , Thursday, December 27, 2012, 16:02 (4350 days ago) @ David Turell
Here is a great example of flying pigs in research of OOL. Using thermal vents in the ocean floor.-"The answer lies in the chemistry of deep-sea hydrothermal vents. In their paper Nick Lane (UCL, Genetics, Evolution and Environment) and Bill Martin (University of Dusseldorf) address the question of where all this energy came from -- and why all life as we know it conserves energy in the peculiar form of ion gradients across membranes. "Life is, in effect, a side-reaction of an energy-harnessing reaction. Living organisms require vast amounts of energy to go on living,"- "They go on to demonstrate that such protocells are limited by their own permeability, which ultimately forced them to transduce natural proton gradients into biochemical sodium gradients, at no net energetic cost, using a simple Na+/H+ transporter. Their hypothesis predicts a core set of proteins required for early energy conservation, and explains the puzzling promiscuity of respiratory proteins for both protons and sodium ions." -http://www.sciencedaily.com/releases/2012/12/121220143530.htm-Where do those proteins come from? That is the tough part. Pigs can fly!
Origin of Life: Defining life
by David Turell , Thursday, December 27, 2012, 17:48 (4350 days ago) @ David Turell
There is really no single definition that satisfies everyone. Here is one that favors a start by RNA, and tries to talk itself around all the problems with that approach.:-http://www.the-scientist.com/?articles.view/articleNo/31730/title/Opinion--What-Is-Life--/
Origin of Life: Very early
by David Turell , Friday, January 04, 2013, 15:56 (4342 days ago) @ David Turell
Traces from 3.49 billion years ago in Australia.-http://phys.org/news/2013-01-earliest-evidence-life-billion-years.html
Origin of Life: fat globules
by David Turell , Friday, January 11, 2013, 15:16 (4335 days ago) @ David Turell
On an inorganic early Earth where did the fat come from? More flying pigs:-http://www.newscientist.com/article/mg21728995.000-bubbles-of-fat-hint-at-origin-of-reproduction.html?
Origin of Life: enzymes
by David Turell , Thursday, January 31, 2013, 16:02 (4315 days ago) @ David Turell
This paper breathlessly tells us that the research may lead to understanding how enzymes evolved. The whole process of this research is by intelligent design in the lab and the result doesn't look anything like natural enzymes!-"Like all proteins, the new RNA ligase enzyme is a chain of amino acids folded into a 3D structure, but the resemblance stops there. Natural enzymes, like all proteins, are made from alpha helices and beta strands. Seelig's artificial enzyme lacks those structures. Instead, it forms around two metal ions and is not rigid. "Compared to enzymes we know from nature, the artificial enzyme has a rather unusual structure and dynamics," Seelig says."- Read more at: http://phys.org/news/2013-01-unveil-artificial-enzyme-evolution-tube.html#jCp-To remind the unscientific mind: without enzymes organic reactions just don't happen in the immediate present. They take forever. Life requires immediate results. Another problem for those who propose that enzymes appeared by chance, in shifting from an inorganic Earth to a planet with organic life!
Origin of Life: phosphate
by David Turell , Friday, April 05, 2013, 15:01 (4251 days ago) @ David Turell
ATP is the battery of life. Did phosphate-bearing meteorites jump start a battery-chemical form of a 'sort of' life? This would be just a very bare beginning.-http://www.sciencedaily.com/releases/2013/04/130404122234.htm-"While it is generally accepted that some important ingredients for life came from meteorites bombarding the early Earth, scientists have not been able to explain how that inanimate rock transformed into the building blocks of life."
Origin of Life: salt & amino acids
by David Turell , Saturday, April 06, 2013, 15:56 (4250 days ago) @ David Turell
Another lab based theory of the start of life. It ignores the chirality of amino acids and has lots of other suppositons, but it is fun to look at:-http://www.sciencedaily.com/releases/2013/04/130405064027.htm
Origin of Life: stromatolites
by David Turell , Thursday, May 30, 2013, 16:15 (4196 days ago) @ David Turell
Around 3.5 billion years ago. The Earth cooled enough for life at 4 billion years ago:-http://www.sciencedaily.com/releases/2013/05/130528143756.htm
Origin of Life: phosphates
by David Turell , Tuesday, June 04, 2013, 23:22 (4191 days ago) @ David Turell
Perhaps arriving by meteorite. Phosphates are needed in basic RNA/DNA molecules. This article proposes:-"Meteorite phosphorus may have been a fuel that provided the energy and phosphorus necessary for the onset of life," said Pasek, who studies the chemical composition of space and how it might have contributed to the origins of life. "If this meteoritic phosphorus is added to simple organic compounds, it can generate phosphorus biomolecules identical to those seen in life today."- Read more at: http://phys.org/news/2013-06-billion-year-old-mystery-team-life-producing-phosphorus.ht... problem issue is what created the "simple organic compounds" for the phosphorous to combine with? The usual just-so story.
Origin of Life: comets
by David Turell , Thursday, June 06, 2013, 16:08 (4189 days ago) @ David Turell
Computer simulations suggest the arrival of organic compounds from space:-http://phys.org/news/2013-06-life-earth-shockingly-world.html-Remember these are simulations, but organic compounds had to come to Earth somehow. Earth in the beginning did not have them.
Origin of Life: borates
by David Turell , Tuesday, June 11, 2013, 15:31 (4184 days ago) @ David Turell
Borate containing clays could have helped ribose, a sugar needed for RNA, to form on Earth. The lab rats keep trying to explain the OOL. Please allow for the ifs ands and buts in the discussion:-http://www.sciencedaily.com/releases/2013/06/130610220132.htm
Origin of Life: HCN and uv light
by David Turell , Tuesday, June 25, 2013, 16:02 (4170 days ago) @ David Turell
New research demonstrates organic molecules from sunlight:-http://phys.org/news/2013-06-cold-scientists-unveil-secret-reaction.html
Origin of Life: software
by David Turell , Sunday, April 21, 2013, 15:19 (4235 days ago) @ David Turell
The coded information in DNA requires an intelligence to create it.-http://www.metacafe.com/watch/10335610/the_origin_of_life_requires_intelligence_kirk_durston_phd/
Origin of Life: cells without walls
by David Turell , Thursday, July 04, 2013, 15:56 (4161 days ago) @ David Turell
Cell activity without cell walls. Pie in the sky as usual:-http://www.sciencedaily.com/releases/2013/07/130702100115.htm-First cells needed no walls, and they are close to a synthetic cell! but they are starting with molecules provided by life!
Origin of Life: early land life
by David Turell , Tuesday, July 23, 2013, 15:35 (4142 days ago) @ David Turell
It may have appeared 2.2 billion years ago based on new fossils:-http://www.sciencedaily.com/releases/2013/07/130722141548.htm
Origin of Life: early land life
by Balance_Maintained , U.S.A., Tuesday, July 23, 2013, 16:19 (4142 days ago) @ David Turell
It may have appeared 2.2 billion years ago based on new fossils: > > http://www.sciencedaily.com/releases/2013/07/130722141548.htm-Complex organisms at 2.2-2.8byn, more than half the age of the earth. On one side, it is closing the time frame that life had to come into existence, on the other, it is extending the time frame that life had to 'evolve' according to the current model of evolution. Strangely though, it presents another interesting problem. If life existed 2.2-2.8byn ago, why did large life only crop up in the last tiny fraction of that time?
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by David Turell , Tuesday, July 23, 2013, 18:16 (4142 days ago) @ Balance_Maintained
Tony: If life existed 2.2-2.8byn ago, why did large life only crop up in the last tiny fraction of that time?-Actually borderline evidence of bacterial life goes back to 3.6 billion years ago with definite evidence at 3.4 billion years ago. What is described in the article are more complex organisms. Why complex life waited to the Cambrian is an unknown, except that oxygen began to really increase in concentration. It was miniscule when Earth formed and only 5% for much of the time. Now it is 21%. Remember oxygen is a dangerous substance (as any forest fire will tell you) , and living bodies need antioxident controls at all times. My guess is that the complexities of using oxygen to burn fuel took evolution a long time to sort out the controls. Remember I believe in a God-designed evolutionary system that was left to work out complexity much of the time on its own.
Origin of Life: early land life
by Balance_Maintained , U.S.A., Saturday, July 27, 2013, 11:51 (4138 days ago) @ David Turell
But that assumes that the complex life would have been animal. Plants do not need an oxygen rich environment, in fact, they perform better in an oxygen deficient environment. So, again, why didn't plant life explode in that early environment? (Bear in mind that I do believe plants came first an in great quantities long before animals, I am just questioning the huge time frame for the move from simple to complex plant organisms.)
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by David Turell , Saturday, July 27, 2013, 14:47 (4138 days ago) @ Balance_Maintained
Tony: (Bear in mind that I do believe plants came first an in great quantities long before animals, I am just questioning the huge time frame for the move from simple to complex plant organisms.)-The explosion in the type of plants we have today occurred 100 million years or more after the Cambrian. I forget the exact time frame. Simpler plants certainly flourished long before that.
Origin of Life: early land life
by Balance_Maintained , U.S.A., Saturday, July 27, 2013, 22:00 (4138 days ago) @ David Turell
Tony: (Bear in mind that I do believe plants came first an in great quantities long before animals, I am just questioning the huge time frame for the move from simple to complex plant organisms.) > >David: The explosion in the type of plants we have today occurred 100 million years or more after the Cambrian. I forget the exact time frame. Simpler plants certainly flourished long before that.-So we had a few billion years where plants could have exploded into infinite variety and complexity, with an atmosphere that was conducive to them, but they didn't.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by dhw, Sunday, July 28, 2013, 15:37 (4137 days ago) @ Balance_Maintained
Tony: (Bear in mind that I do believe plants came first an in great quantities long before animals, I am just questioning the huge time frame for the move from simple to complex plant organisms.)-David: The explosion in the type of plants we have today occurred 100 million years or more after the Cambrian. I forget the exact time frame. Simpler plants certainly flourished long before that.-TONY: So we had a few billion years where plants could have exploded into infinite variety and complexity, with an atmosphere that was conducive to them, but they didn't.-Sorry, but how do you know the pre-Cambrian atmosphere was conducive to them? Was not being oxygen rich all that was needed to guarantee an explosion? Might it even be possible that the explosion in plant life actually resulted from the explosion in animal life, since the latter would have meant lots of new vegetarians on the prowl? Maybe plants found new ways of propagating, defending themselves, attracting pollinators. I wonder what your own explanation is.
Origin of Life: early land life
by Balance_Maintained , U.S.A., Sunday, July 28, 2013, 21:37 (4137 days ago) @ dhw
TONY: So we had a few billion years where plants could have exploded into infinite variety and complexity, with an atmosphere that was conducive to them, but they didn't. > > DHW: Sorry, but how do you know the pre-Cambrian atmosphere was conducive to them? Was not being oxygen rich all that was needed to guarantee an explosion? Might it even be possible that the explosion in plant life actually resulted from the explosion in animal life, since the latter would have meant lots of new vegetarians on the prowl? Maybe plants found new ways of propagating, defending themselves, attracting pollinators. I wonder what your own explanation is.-We have a pretty strong estimate of what the early atmosphere was like. There is strong reason to suspect that the early atmosphere was laden with large levels of CO2, and limited oxygen. Plant respiration could use that and gradually bring the O2 levels up to the level where non-plant live could exist without dying. With the exception of extremophiles, the vast majority of animal life needs oxygen to survive. The logical conclusion is that the CO2 rich atmosphere was converted to the proper balance of O2 in the simplest manner, i.e. plants.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by dhw, Monday, July 29, 2013, 15:09 (4136 days ago) @ Balance_Maintained
TONY: So we had a few billion years where plants could have exploded into infinite variety and complexity, with an atmosphere that was conducive to them, but they didn't.-DHW: Sorry, but how do you know the pre-Cambrian atmosphere was conducive to them? Was not being oxygen rich all that was needed to guarantee an explosion? Might it even be possible that the explosion in plant life actually resulted from the explosion in animal life, since the latter would have meant lots of new vegetarians on the prowl? Maybe plants found new ways of propagating, defending themselves, attracting pollinators. I wonder what your own explanation is.-TONY: We have a pretty strong estimate of what the early atmosphere was like. There is strong reason to suspect that the early atmosphere was laden with large levels of CO2, and limited oxygen. Plant respiration could use that and gradually bring the O2 levels up to the level where non-plant live could exist without dying. With the exception of extremophiles, the vast majority of animal life needs oxygen to survive. The logical conclusion is that the CO2 rich atmosphere was converted to the proper balance of O2 in the simplest manner, i.e. plants.-It's certainly a logical conclusion that plant life prepared the way for diversified animal life. That concept fits in nicely with evolution. We were asking, though, why there was no explosion in plant life until after the Cambrian, and so I thought you might have a teleological explanation, as opposed to my evolutionary ramblings.
Origin of Life: early land life
by Balance_Maintained , U.S.A., Tuesday, July 30, 2013, 11:54 (4135 days ago) @ dhw
TONY: We have a pretty strong estimate of what the early atmosphere was like. There is strong reason to suspect that the early atmosphere was laden with large levels of CO2, and limited oxygen. Plant respiration could use that and gradually bring the O2 levels up to the level where non-plant live could exist without dying. With the exception of extremophiles, the vast majority of animal life needs oxygen to survive. The logical conclusion is that the CO2 rich atmosphere was converted to the proper balance of O2 in the simplest manner, i.e. plants. > >DHW: It's certainly a logical conclusion that plant life prepared the way for diversified animal life. That concept fits in nicely with evolution. We were asking, though, why there was no explosion in plant life until after the Cambrian, and so I thought you might have a teleological explanation, as opposed to my evolutionary ramblings.-No explanation at all, and that was my original point. If the neo-evolutionary theory were correct, then in the 3.3byn between vegetable life first appearing and the Cambrian explosion, we should have seen much more diversity and complexity in the plant life than we do, instead of it all appearing in a geological instant and diverging wildly over the span of a few hundred million years.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by dhw, Tuesday, July 30, 2013, 17:59 (4135 days ago) @ Balance_Maintained
DHW: It's certainly a logical conclusion that plant life prepared the way for diversified animal life. That concept fits in nicely with evolution. We were asking, though, why there was no explosion in plant life until after the Cambrian, and so I thought you might have a teleological explanation, as opposed to my evolutionary ramblings.-TONY: No explanation at all, and that was my original point. If the neo-evolutionary theory were correct, then in the 3.3byn between vegetable life first appearing and the Cambrian explosion, we should have seen much more diversity and complexity in the plant life than we do, instead of it all appearing in a geological instant and diverging wildly over the span of a few hundred million years.-I've offered you several possible evolutionary scenarios. A change in the atmosphere conducive to diversity and complexity, or a link with the animal "explosion", which may have required new ways of plants "propagating, defending themselves, attracting pollinators". All speculation, but I can't see why this negates evolutionary theory. On the other hand, for those who see God's guiding hand at work in all of creation, there ought to be some kind of theory as to why he didn't bother with plant diversity till after the Cambrian.
Origin of Life: early land life
by David Turell , Tuesday, July 30, 2013, 18:44 (4135 days ago) @ dhw
> TONY: No explanation at all, and that was my original point. If the neo-evolutionary theory were correct, then in the 3.3byn between vegetable life first appearing and the Cambrian explosion, we should have seen much more diversity and complexity in the plant life than we do, instead of it all appearing in a geological instant and diverging wildly over the span of a few hundred million years. > > dhw:I've offered you several possible evolutionary scenarios. A change in the atmosphere conducive to diversity and complexity, or a link with the animal "explosion", which may have required new ways of plants "propagating, defending themselves, attracting pollinators". All speculation, but I can't see why this negates evolutionary theory. On the other hand, for those who see God's guiding hand at work in all of creation, there ought to be some kind of theory as to why he didn't bother with plant diversity till after the Cambrian.-Your explanation is why I think theistic evolution is the process, with God stepping in now and then if his preplanned process, which has a lot of convergence latitude, seems a little off course.
Origin of Life: early land life
by Balance_Maintained , U.S.A., Saturday, August 03, 2013, 23:55 (4131 days ago) @ dhw
TONY: No explanation at all, and that was my original point. If the neo-evolutionary theory were correct, then in the 3.3byn between vegetable life first appearing and the Cambrian explosion, we should have seen much more diversity and complexity in the plant life than we do, instead of it all appearing in a geological instant and diverging wildly over the span of a few hundred million years. > > DHW: I've offered you several possible evolutionary scenarios. A change in the atmosphere conducive to diversity and complexity, or a link with the animal "explosion", which may have required new ways of plants "propagating, defending themselves, attracting pollinators". All speculation, but I can't see why this negates evolutionary theory. On the other hand, for those who see God's guiding hand at work in all of creation, there ought to be some kind of theory as to why he didn't bother with plant diversity till after the Cambrian.- For those of us that see God's handiwork, yes, the data does in fact fit the theory. Plant's came first in the realm of visible living specimens. Why? As I said back when I first joined the site, they were the most economical way to prepare the planet for animal life. As for why they were not more diverse in the beginning, I suspect it is because a) there was no need for them to be, b) it would have taken time for the resources such as soil to build up to sufficient levels to support larger forms, so it would have been pointless to create something that was unsustainable. -From the beginning, my take has been that it was done in stages, and that it was absolutely critical that each stage ran its course in order to pave the way for the next stage. While you will likely (and have) assert that God should have just *poofed* it into existence all fully formed and ready to go, I counter that he is not wasteful (as evidenced by creation itself in all of its efficient, conservative, and recycling glory) and therefore would have started slowly, patiently making each step and not making another until the time was right for him to do so with the least expenditure of energy in a manner that would enable a self sustaining ecosystem. -To use a cooking analogy, if you put the turkey in the oven without turning it on, set the temp wrong, take it out too early or too late, don't prepare it properly, or tend it properly, you end up with a terrible dinner. It will either be toxic, tasteless, or inedible. If you start the sides too early, or too late, or do not follow the recipe for each one (making sure you have all the ingredients before you start) you will ruin the dishes and/ore the entire meal. Each step has to be done 'just so' and in its own time in order to produce a truly wonderful meal. -We live in a 'just so' universe. A charmed existence that by all rights should simply not be possible. When I eat a wonderful meal, I know there was a cook paying exquisite attention to it while it was being prepared. When I live this exquisite life, I can not help but understand that it too was just as meticulously prepared.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by dhw, Sunday, August 04, 2013, 20:02 (4130 days ago) @ Balance_Maintained
TONY: From the beginning, my take has been that it was done in stages, and that it was absolutely critical that each stage ran its course in order to pave the way for the next stage. While you will likely (and have) assert that God should have just *poofed* it into existence all fully formed and ready to go, I counter that he is not wasteful (as evidenced by creation itself in all of its efficient, conservative, and recycling glory) and therefore would have started slowly, patiently making each step and not making another until the time was right for him to do so with the least expenditure of energy in a manner that would enable a self sustaining ecosystem.-And this is where our approach differs. You begin with the conviction that God has planned everything, and so you fit the world into your subjective vision of it: God is not "wasteful". My own equally subjective vision is different from yours. I see the exquisiteness and the miraculous engineering, but I also see endless wastefulness: stars coming and going, species coming and going (hence my harping on about dinosaurs and dodos), and a general randomness in the history of life and the universe as we know them. Then I test the different theories as to how life got this way: 1) There is no god. This would explain the randomness, but not the engineering. The alternative is a form of consciousness whose origin is inexplicable, and whose power is great enough to create and manipulate a whole universe. That for me is as incredible as believing in chance. However, if there is such a force, we have various possible concepts of it: 1) It planned everything, and nothing in life's history is random. This fits in with your vision of the universe (and with your delightful analogy of the roast turkey), but not with mine. 2) It built the machinery, and then let it run randomly, watching what happens. 3) It built the machinery and occasionally intervened, with a view to making life more interesting (e.g. through humans). I'm not sure what you think I've asserted should have been "poofed" into existence, unless you're referring specifically to humans. The point I've made repeatedly is that if God had set out with a view to making humans (as David believes), there's no accounting for the higgledy-piggledy evolutionary bush that preceded our species. Why the dodo? Randomness, yes. Experimentation if you like. But my subjective view of the history of life and the universe, as far as we know it, does not coincide with a god deliberately creating, manipulating, and destroying billions of stars, adjusting the climate and the environment of our own little planet, and organizing all the coming and going varieties of life, stage after stage, in order to arrive at humanity. I am therefore stuck, as you know on my picket fence, but if I did believe in a god of any kind, 1) would be the last of my choices.
Origin of Life: early land life
by Balance_Maintained , U.S.A., Sunday, August 04, 2013, 22:53 (4130 days ago) @ dhw
DHW: And this is where our approach differs. You begin with the conviction that God has planned everything, and so you fit the world into your subjective vision of it: God is not "wasteful". My own equally subjective vision is different from yours. I see the exquisiteness and the miraculous engineering, but I also see endless wastefulness: stars coming and going, species coming and going (hence my harping on about dinosaurs and dodos), and a general randomness in the history of life and the universe as we know them.-Actually, that was not a basic assumption, but an inference from observations based on what I see in nature. Take a close look at nature and physics; little if anything is wasted. Even the gravitational pulls of all those 'wasteful stars' play into keeping everything in balance, aside from being ascetically pleasing. How many different types of energy do we get from the sun? How is it that so much is recycled naturally, whether we are talking about toxic gasses, poop, or even the very carbon in your body? -->DHW: Then I test the different theories as to how life got this way: 1) There is no god. This would explain the randomness, but not the engineering. -Precisely.->DHW: The alternative is a form of consciousness whose origin is inexplicable, and whose power is great enough to create and manipulate a whole universe. That for me is as incredible as believing in chance. However, if there is such a force, we have various possible concepts of it: 1) It planned everything, and nothing in life's history is random. This fits in with your vision of the universe (and with your delightful analogy of the roast turkey), but not with mine. 2) It built the machinery, and then let it run randomly, watching what happens. 3) It built the machinery and occasionally intervened, with a view to making life more interesting (e.g. through humans). -You forgot number 4.-4) He engineered the system, its hardware, software, and interfaces, to work in harmony while allowing for the greatest flexibility and freedom. Also, it is freely given that he occasionally intervened, and in more ways than simply creating humans. --> >DHW: I'm not sure what you think I've asserted should have been "poofed" into existence, unless you're referring specifically to humans. The point I've made repeatedly is that if God had set out with a view to making humans (as David believes), there's no accounting for the higgledy-piggledy evolutionary bush that preceded our species. - *poofed* as in occurring randomly, spontaneously, or without any form of pre-planning or pre-programming. All of these innovations just *poof* into existence fully formed and operational. Of course, by your account, there is some cellular level of intelligence capable of spontaneously creating functionally perfect innovations in one shot guarantees that it will be passed on 'just so' to its offspring.- >DHW: Why the dodo? Randomness, yes. Experimentation if you like. But my subjective view of the history of life and the universe, as far as we know it, does not coincide with a god deliberately creating, manipulating, and destroying billions of stars, adjusting the climate and the environment of our own little planet, and organizing all the coming and going varieties of life, stage after stage, in order to arrive at humanity.-Why are you hung up on the dodo? I never hear you question the ostrich, emu, chicken, or other flightless birds. Because of humans, we will never really know what their role was in that ecosystem. But more to the point, I have never once said that each and every variation of a 'kind' was planned individually. Only that the groups were planned with constraints and allowed to go as they will within those constraints.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by dhw, Monday, August 05, 2013, 11:25 (4129 days ago) @ Balance_Maintained
TONY: Take a close look at nature and physics; little if anything is wasted. Even the gravitational pulls of all those 'wasteful stars' play into keeping everything in balance, aside from being ascetically pleasing. -My 'wastefulness' refers to extinction: e.g. supernovae. One day our own sun will become as extinct as a dodo (see below). Of course you can argue that nothing really becomes extinct, because the atoms will still be around, but in my subjective view, the whole process of coming and going reeks of randomness and not planning.-DHW: Then I test the different theories as to how life got this way: 1) There is no god. This would explain the randomness, but not the engineering. TONY: Precisely.-So please bear in mind that I accept NONE of the hypotheses. I am not blind to the engineering! The randomness refers to the course of history.-DHW: The alternative is a form of consciousness whose origin is inexplicable, and whose power is great enough to create and manipulate a whole universe. That for me is as incredible as believing in chance.-You've made no comment on this, but it has the same force in my thinking as the acknowledgement of the engineering. I can't believe in chance, and I can't believe in a spontaneously generated and infinite form of creative consciousness. Acceptance of either hypothesis requires a degree of faith I do not have.-Dhw: However, if there is such a force, we have various possible concepts of it: 1) It planned everything, and nothing in life's history is random. This fits in with your vision of the universe (and with your delightful analogy of the roast turkey), but not with mine. 2) It built the machinery, and then let it run randomly, watching what happens. 3) It built the machinery and occasionally intervened, with a view to making life more interesting (e.g. through humans). TONY: You forgot number 4. 4) He engineered the system, its hardware, software, and interfaces, to work in harmony while allowing for the greatest flexibility and freedom. Also, it is freely given that he occasionally intervened, and in more ways than simply creating humans.-I can't see the difference between your 4 and my 3 (= it built the machinery). I gave humans as an example (= e.g.) not a one-off.-DHW: I'm not sure what you think I've asserted should have been "poofed" into existence, unless you're referring specifically to humans. The point I've made repeatedly is that if God had set out with a view to making humans (as David believes), there's no accounting for the higgledy-piggledy evolutionary bush that preceded our species. TONY: *poofed* as in occurring randomly, spontaneously, or without any form of pre-planning or pre-programming. All of these innovations just *poof* into existence fully formed and operational. Of course, by your account, there is some cellular level of intelligence capable of spontaneously creating functionally perfect innovations in one shot guarantees that it will be passed on 'just so' to its offspring.-That is all part of the engineering, and comes under 2) and 3) ... if God exists, he built the intelligent cell which (like humans and their own inventions) produces functional innovations. Even your own scenario of separately created "kinds" followed by variations requires just such a mechanism. In this context, please see also my last paragraph.-DHW: Why the dodo? Randomness, yes. Experimentation if you like. But my subjective view of the history of life and the universe, as far as we know it, does not coincide with a god deliberately creating, manipulating, and destroying billions of stars, adjusting the climate and the environment of our own little planet, and organizing all the coming and going varieties of life, stage after stage, in order to arrive at humanity.-TONY: Why are you hung up on the dodo? I never hear you question the ostrich, emu, chicken, or other flightless birds. Because of humans, we will never really know what their role was in that ecosystem.-Once again, I'm talking about extinction, i.e. wastefulness. That's why I often talk of dinosaurs and dodos. You are convinced that dodos and other extinct forms of life played a role in the ecosystem, and without them there could have been no humans. I am not. I see it as wastefulness, supporting my 2) and 3) versions of your God (as opposed to 1)).-TONY: But more to the point, I have never once said that each and every variation of a 'kind' was planned individually. Only that the groups were planned with constraints and allowed to go as they will within those constraints.-Nor have I ever once said you said that! You have overlooked what I wrote under "Topsy-turvy evolution" when questioning how your separate creation works: "I don't know how you can separate creation of "kinds" from the countless innovations that combine to make those "kinds". Are you saying that God invented vision, hearing, lungs, livers, nervous systems, digestive systems etc. etc. all at the same time, as it were 'in vacuo', and then incorporated them into the first mammals, fish, reptiles, birds, which were then left to evolve into their various species?" I take mammals etc. to be your "kinds", with different species as your variations. Meanwhile, I would love to know your answer to my question.
Origin of Life: early land life
by Balance_Maintained , U.S.A., Wednesday, August 07, 2013, 14:38 (4127 days ago) @ dhw
DHW: The alternative is a form of consciousness whose origin is inexplicable, and whose power is great enough to create and manipulate a whole universe. That for me is as incredible as believing in chance. > > You've made no comment on this, but it has the same force in my thinking as the acknowledgement of the engineering. I can't believe in chance, and I can't believe in a spontaneously generated and infinite form of creative consciousness. Acceptance of either hypothesis requires a degree of faith I do not have.-Because to me it is a degree of certainty that does not require much in the way of faith. If I see engineering then there is an engineer. I don't have to see the engineer, or know every detail about them to know beyond doubt that they exist. -> TONY: Why are you hung up on the dodo? I never hear you question the ostrich, emu, chicken, or other flightless birds. Because of humans, we will never really know what their role was in that ecosystem. > > Once again, I'm talking about extinction, i.e. wastefulness. That's why I often talk of dinosaurs and dodos. You are convinced that dodos and other extinct forms of life played a role in the ecosystem, and without them there could have been no humans. I am not. I see it as wastefulness, supporting my 2) and 3) versions of your God (as opposed to 1)). > -The dodo, and a great number of other species simply did not 'go extinct'. We killed them off. Don't attribute humanity's choices to wastefulness on God's part. As for those creatures that DID go extinct naturally, I can think of two very good reasons why that is not 'wasteful'. First, if they have served the purpose they were created for, then it is not wasteful, they have merely fulfilled their purpose and been retired (I am not asserting that is what happened, just musing on the subject.) Secondly, the creation of a group does not necessarily guarantee that every offshoot of that group would endure forever. Secondly, the major 'kinds' or families have, except in the case of a catastrophic event or human intervention, not gone extinct. Certain lineages may have died out, but the kinds do endure. -In terms of stars going nova, even that serves a purpose. The ejected material goes into the formation and dispersion of new materials into the universe and the energy and gravity wells left behind help shape and maintain the balance of the universe. You seem to think that just because something, as a whole, doesn't last forever that its creation was wasteful. - >DHW: Nor have I ever once said you said that! You have overlooked what I wrote under "Topsy-turvy evolution" when questioning how your separate creation works: "I don't know how you can separate creation of "kinds" from the countless innovations that combine to make those "kinds". Are you saying that God invented vision, hearing, lungs, livers, nervous systems, digestive systems etc. etc. all at the same time, as it were 'in vacuo', and then incorporated them into the first mammals, fish, reptiles, birds, which were then left to evolve into their various species?" I take mammals etc. to be your "kinds", with different species as your variations. Meanwhile, I would love to know your answer to my question.-Yes, I think that the generic blueprint for the individual organs were made with the same type of model that the creatures themselves were, which is to say that the are allowed to very within tightly controlled specifications in a self-correcting system that allows for ongoing sustainability without direct intervention. Even beyond 'mamals' I personally think of 'kinds' in terms of the next subset down, i.e. canine, feline, ursine, bovine, equine, etc. It is even possible that there is a more narrow spec that we simply have not thought to use of as a categorization that would, in retrospect, make the distinctions even more clear. So a 'Labrador' or a 'Collie' are mere variations on the overarching 'canine' kind. I do not think we will ever get a successful breeding of a canine and feline.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early land life
by David Turell , Wednesday, August 07, 2013, 15:27 (4127 days ago) @ Balance_Maintained
Tony: The dodo, and a great number of other species simply did not 'go extinct'. We killed them off. Don't attribute humanity's choices to wastefulness on God's part. As for those creatures that DID go extinct naturally, I can think of two very good reasons why that is not 'wasteful'. First, if they have served the purpose they were created for, then it is not wasteful, they have merely fulfilled their purpose and been retired (I am not asserting that is what happened, just musing on the subject.) Secondly, the creation of a group does not necessarily guarantee that every offshoot of that group would endure forever. Secondly, the major 'kinds' or families have, except in the case of a catastrophic event or human intervention, not gone extinct. Certain lineages may have died out, but the kinds do endure. > > In terms of stars going nova, even that serves a purpose. The ejected material goes into the formation and dispersion of new materials into the universe and the energy and gravity wells left behind help shape and maintain the balance of the universe. You seem to think that just because something, as a whole, doesn't last forever that its creation was wasteful. -What dhw forgets is the 'balance of nature'. Organisms eat living things to live or consume plants to live. Everytime we introduce the wrong thing into the balance of nature it becomes unbalanced. Ask Australia about rabbits. There is a purpose in extinction as part of the pattern of life.
Origin of Life: balance of nature
by David Turell , Wednesday, August 07, 2013, 19:23 (4127 days ago) @ David Turell
A current example of unbalancing nature:-http://www.scientificamerican.com/article.cfm?id=threats-to-sharks-destabilize-entire-ecosystems&WT.mc_id=SA_DD_20130807
Origin of Life: early land life
by dhw, Thursday, August 08, 2013, 12:13 (4126 days ago) @ Balance_Maintained
TONY: If I see engineering then there is an engineer. I don't have to see the engineer, or know every detail about them to know beyond doubt that they exist.-This works nicely if you shrink your vision to human dimensions. But we have nothing with which to compare the vast "machine" of the universe, approx. 95% of whose matter and energy is unknown, whose provenance is unknown, and whose mechanisms are without known precedent. How can we know what goes to make a universe, or how many universes there have been in the past? The only world I know seems to me to be nothing but a random mixture of wonders and disasters, exquisite beauty and devastating horrors, earthly heaven and earthly hell. Maybe your God made it that way. Maybe it just evolved that way of its own natural accord. TONY: The dodo, and a great number of other species simply did not 'go extinct'. We killed them off. Don't attribute humanity's choices to wastefulness on God's part. -My point is that extinction suggests randomness, not purpose. But you're right, I should stick to dinosaurs since you can't attribute their demise to humans. -TONY: As for those creatures that DID go extinct naturally, I can think of two very good reasons why that is not 'wasteful'. First, if they have served the purpose they were created for, then it is not wasteful, they have merely fulfilled their purpose and been retired (I am not asserting that is what happened, just musing on the subject.) -"Retired" is a nice euphemism! But your musing presupposes purpose. I see no sign of purpose in the comings and goings and higgledy-piggledy branchings of species. That suggests to me either the absence of any God, or a God that has left the mechanism of evolution to run its own haphazard course. Unpredictable variety for its own sake or experimentation would provide a more convincing explanation for me - unpredictability being a vital element of most entertainments. (David's anthropocentric view of the universe raises the question of his hidden God's purpose in creating humans. Entertainment seems a good bet - but I'm just musing on the subject!)-TONY: Secondly, the creation of a group does not necessarily guarantee that every offshoot of that group would endure forever. Secondly, the major 'kinds' or families have, except in the case of a catastrophic event or human intervention, not gone extinct. Certain lineages may have died out, but the kinds do endure. In terms of stars going nova, even that serves a purpose. The ejected material goes into the formation and dispersion of new materials into the universe and the energy and gravity wells left behind help shape and maintain the balance of the universe. You seem to think that just because something, as a whole, doesn't last forever that its creation was wasteful.-Death and recycling are certainly integral to Nature, but please see my response to David at the end.-DHW: Are you saying that God invented vision, hearing, lungs, livers, nervous systems, digestive systems etc. etc. all at the same time, as it were 'in vacuo', and then incorporated them into the first mammals, fish, reptiles, birds, which were then left to evolve into their various species?-TONY: Yes, I think that the generic blueprint for the individual organs were made with the same type of model that the creatures themselves were, which is to say that the are allowed to very within tightly controlled specifications in a self-correcting system that allows for ongoing sustainability without direct intervention. Even beyond 'mamals' I personally think of 'kinds' in terms of the next subset down, i.e. canine, feline, ursine, bovine, equine, etc.-This is not clear to me. Do you think God made the first canines, felines, ursines etc. all at the same time, incorporating all the new organs at the same time, and then left them to develop their own variations?-DAVID: What dhw forgets is the 'balance of nature'. Organisms eat living things to live or consume plants to live. Everytime we introduce the wrong thing into the balance of nature it becomes unbalanced. Ask Australia about rabbits. There is a purpose in extinction as part of the pattern of life.-Life certainly couldn't go on without balance in Nature. That's where natural selection plays a major role. And living creatures need fuel. And death and recycling are integral. But instead of saying "There is a purpose" (= God), one can say "That's just how it is" (= Nature). It's a similar dichotomy to that in your maths article: two say maths is built into the universe, and two say it's a human imposition on the universe.
Origin of Life: early land life
by David Turell , Thursday, August 08, 2013, 15:26 (4126 days ago) @ dhw
TONY: If I see engineering then there is an engineer. I don't have to see the engineer, or know every detail about them to know beyond doubt that they exist. > > dhw:This works nicely if you shrink your vision to human dimensions.Maybe your God made it that way..... Maybe it just evolved that way of its own natural accord.-But it created life from inorganic matter. Smells of teleology-> > TONY: As for those creatures that DID go extinct naturally, I can think of two very good reasons why that is not 'wasteful'. First, if they have served the purpose they were created for, then it is not wasteful, they have merely fulfilled their purpose and been retired (I am not asserting that is what happened, just musing on the subject.) > > dhw: "Retired" is a nice euphemism! But your musing presupposes purpose. I see no sign of purpose in the comings and goings and higgledy-piggledy branchings of species. That suggests to me either the absence of any God, or a God that has left the mechanism of evolution to run its own haphazard course. -How does your view explain humans with consciousness? Of course you equate chance with God, by choosing neither. > > DAVID: What dhw forgets is the 'balance of nature'. Organisms eat living things to live or consume plants to live. Everytime we introduce the wrong thing into the balance of nature it becomes unbalanced. Ask Australia about rabbits. There is a purpose in extinction as part of the pattern of life. > > dhw:Life certainly couldn't go on without balance in Nature. That's where natural selection plays a major role. And living creatures need fuel. And death and recycling are integral. But instead of saying "There is a purpose" (= God), one can say "That's just how it is" (= Nature). It's a similar dichotomy to that in your maths article: two say maths is built into the universe, and two say it's a human imposition on the universe.-Read Shapiro closely. Natural selection's role is less major than Darwin wished. And 'wished' is the correct view of his theory. Natural selection only sorts out among organisms that have the ability to change their own destiny with epigenetics.-As for the maths of the universe, how do you explain a human consciousness that is able to describe the laws of the universe and nature through math? And propose potential discoveries through the imaginative abilities of math? Built in or imposed is just two views of the same phenomenon.
Origin of Life: early land life
by dhw, Friday, August 09, 2013, 09:06 (4126 days ago) @ David Turell
Dhw: Life certainly couldn't go on without balance in Nature. That's where natural selection plays a major role. And living creatures need fuel. But instead of saying "There is a purpose" (= God), one can say "That's just how it is" (= Nature). It's a similar dichotomy to that in your maths article: two say maths is an integral part of the universe, and two say it's a human imposition on the universe.-DAVID: Natural selection's role is less major than Darwin wished. And 'wished' is the correct view of his theory. Natural selection only sorts out among organisms that have the ability to change their own destiny with epigenetics.-We have always agreed on the non-creative role of natural selection, which is to ensure that whatever organs and organisms are most suited to the environment will survive. Obviously that means that there has to be a balance between the forms and numbers of organisms and whatever the environment can sustain. The rest will perish. That is why I say natural selection plays a major role in the balance of Nature.-DAVID: As for the maths of the universe, how do you explain a human consciousness that is able to describe the laws of the universe and nature through math? And propose potential discoveries through the imaginative abilities of math? Built in or imposed is just two views of the same phenomenon.-Neither you nor I can explain human consciousness, or divine consciousness if it exists. No-one can. We go back to first cause and faith. 'Built in' or 'imposed' are opposite views of the same phenomenon (see my comment on patterns under "Ruth & Rindler"). In this post, you have argued that Darwin's theory of natural selection is less major than he would have wished. You are therefore saying that his pattern is not built into reality in the way he thought it was, but that he is imposing his own (false) pattern on it.
Origin of Life: early land life
by David Turell , Friday, August 09, 2013, 15:32 (4125 days ago) @ dhw
edited by unknown, Friday, August 09, 2013, 15:38
dhw:In this post, you have argued that Darwin's theory of natural selection is less major than he would have wished. You are therefore saying that his pattern is not built into reality in the way he thought it was, but that he is imposing his own (false) pattern on it.-I feel sorry for poor Darwin. He took what he observed in breeding, his knowledge of species and of the layers of geology, and developed a logical theory for his level of knowledge. Just as we are discussing the confusion of classical physicists as they are forced to digest the findings of QM, current clasical Darwinists are fighting tooth and nail to preserve his ancient thoughts. It isn't working. Natural selection as a final arbitor, has nothing to do with speciation. It sorts out variation in species to refine the species. The fossil record shows that new forms arrive de novo, working well. Where was natural selection at that time? Read Shapiro carefully. He is deconstructing Darwnism.
Origin of Life: early land life
by David Turell , Friday, August 09, 2013, 15:53 (4125 days ago) @ dhw
dhw: Neither you nor I can explain human consciousness, or divine consciousness if it exists. No-one can. We go back to first cause and faith. -According to Ruth's presentation first cause is confusing quantum energy, filled with chaotic smudges of energy bits running around in fields that bump into each other, and create potentialities and somehow or other cause an organized universe to appear, allow life and consciousness to appear. All by chance? Not logically. Mix chaos theory and QM without an organizing principal and you get what? Nothing. There had to have been intelligence at the beginning if the underlying basis of our reality is quantum quicksand.
Origin of Life: early land life
by dhw, Saturday, August 10, 2013, 08:46 (4125 days ago) @ David Turell
dhw: In this post, you have argued that Darwin's theory of natural selection is less major than he would have wished. You are therefore saying that his pattern is not built into reality in the way he thought it was, but that he is imposing his own (false) pattern on it.-DAVID: I feel sorry for poor Darwin. He took what he observed in breeding, his knowledge of species and of the layers of geology, and developed a logical theory for his level of knowledge etc. etc. I used your first attack on Darwin to illustrate the difference between built-in and imposed patterns, since you believe that your patterns are built-in and other people's are imposed. However, you have switched the subject to yet another attack on Darwin! Not necessary. The two of us have long since agreed on which aspects of Darwin's theory we accept and reject. This poor dead horse needs no more flogging. -dhw: Neither you nor I can explain human consciousness, or divine consciousness if it exists. No-one can. We go back to first cause and faith. -DAVID: According to Ruth's presentation first cause is confusing quantum energy, filled with chaotic smudges of energy bits running around in fields that bump into each other, and create potentialities and somehow or other cause an organized universe to appear, allow life and consciousness to appear. All by chance? Not logically. Mix chaos theory and QM without an organizing principal and you get what? Nothing. There had to have been intelligence at the beginning if the underlying basis of our reality is quantum quicksand.-I don't know what Ruth's first cause is, but the above description is no different from what we have already discussed many times, except that it has been garnished with blobs of quantum terminology. First cause energy produces matter that somehow produces a universe and life. Alternative explanations: 1) chance, 2) divine intelligence, 3) panpsychist evolution. Some of us find it impossible to believe in any of these. You go for 2). That's faith. And that's our second dead horse flogged again!-Perhaps Ruth will tell us which pattern she imposes (if any) on "first cause" and end the suspense!
Origin of Life: proof
by David Turell , Thursday, August 22, 2013, 15:07 (4112 days ago) @ dhw
A good debate about who should be most required to offer proof of a chance start to life vs. a theistic start:-http://www.uncommondescent.com/origin-of-life/merely-random-origin-of-life-rabbi-averick-turns-the-spout-on-bertrand-russells-teapot/
Origin of Life: proof
by dhw, Friday, August 23, 2013, 10:55 (4112 days ago) @ David Turell
DAVID: A good debate about who should be most required to offer proof of a chance start to life vs. a theistic start:-http://www.uncommondescent.com/origin-of-life/merely-random-origin-of-life-rabbi-averic...-Ugh, the usual pot versus kettle! THEIST: Prove to me that the universe, life and consciousness originated by chance. ATHEIST: I can't. THEIST: Yah boo, you're all airy-fairy faith. ATHEIST: Prove to me that there's an uncaused, eternal, self-aware, let alone loving and caring mind with the knowledge and power to create a universe, life and consciousness. THEIST: I can't. ATHEIST: Yahweh, you're all airy-fairy faith. AGNOSTIC: Now then, children, stop this silly squabbling. You're each as airy-fairy as the other, so come and have a nice cup of Earl Russell tea here with me on the picket fence.
Origin of Life: from Mars?
by David Turell , Thursday, August 29, 2013, 21:04 (4105 days ago) @ dhw
Back to a form of panspermia. The article shows that we still have no idea how life started, where ever it was:-http://blogs.scientificamerican.com/life-unbounded/2013/08/29/maybe-mars-seeded-earths-life-maybe-it-didnt/?WT_mc_id=SA_CAT_SPCPHYS_20130829
Origin of Life: meteorite chemicals
by David Turell , Tuesday, September 10, 2013, 18:35 (4093 days ago) @ David Turell
A new analysis of a meteorite in California found phenols and benzene, but no mention of amino acids, necessary for life. I reviewed the findings.:-http://phys.org/news/2013-09-analysis-sutter-mill-fragments-reveals.html
Origin of Life: meteorite chemicals
by David Turell , Saturday, September 14, 2013, 15:58 (4089 days ago) @ David Turell
Possible early enzymes:-"Our results suggest that there were very active protein enzymes very early in the generation of life, before there were organisms," Carter said. "And those enzymes were very much like the Urzymes we've made." The finding also suggests that Urzymes evolved from even simpler ancestors—tiny proteins called peptides. And over time those peptides co-evolved with RNA to give rise to more complex life forms. In this "Peptide-RNA World" scenario, RNA would have contained the instructions for life while peptides would have accelerated key chemical reactions to carry out those instructions. "To think that these two Urzymes might have launched protein synthesis before there was life on Earth is totally electrifying," Carter said. "I can't imagine a much more exciting result to be working on, if one is interested in the origin of life."- Read more at: http://phys.org/news/2013-09-assumptions-life.html#jCp-But where did the peptides come from and who supplied the information, called instructions here?-Another pipe dream
Origin of Life: comets?
by David Turell , Monday, September 16, 2013, 15:02 (4087 days ago) @ David Turell
A lab experiment found that comets smashing into an icy planet can produce amino acids. Apparently found one essential amino acid in the mix: but, of course, equally both right and left handed. Why does life choose to be lefty?-http://www.nature.com/ngeo/journal/vaop/ncurrent/full/ngeo1930.html-Meteorites bring more useful amino acids, eight. Keep trying, guys, but the origin of life stil looks miraculous to quote Paul Davies.
Origin of Life: whole cell
by David Turell , Thursday, September 19, 2013, 01:01 (4085 days ago) @ David Turell
"A working cell is more than the sum of its parts. "A functioning cell must be entirely correct at once, in all its complexity," said Huck. "We are now closer to building a synthetic cell than anyone ever before us." my bold- http://www.sciencedaily.com/releases/2013/07/130702100115.htm-Why would organic molecules decide to play together without some kind of guidance?
Origin of Life: whole cell
by David Turell , Saturday, September 21, 2013, 16:08 (4082 days ago) @ David Turell
"A working cell is more than the sum of its parts. "A functioning cell must be entirely correct at once, in all its complexity," said Huck. "We are now closer to building a synthetic cell than anyone ever before us." my bold > > > http://www.sciencedaily.com/releases/2013/07/130702100115.htm > > Why would organic molecules decide to play together without some kind of guidance?-The initial cell was very complex. There is no other simple way life started:-http://invivoveritasest.blogspot.com/2013/07/a-minimum-cell-model-and-origin-of-life_4.html
Origin of Life: whole cell
by dhw, Sunday, September 22, 2013, 19:07 (4081 days ago) @ David Turell
DAVID: A working cell is more than the sum of its parts. "A functioning cell must be entirely correct at once, in all its complexity," said Huck. "We are now closer to building a synthetic cell than anyone ever before us." [David's bold]-I'm reminded of my own conclusion to the "brief guide": some folk believe "that if they ever can consciously and deliberately design such an organism, it will prove that they themselves were not designed."-http://www.sciencedaily.com/releases/2013/07/130702100115.htm-DAVID: Why would organic molecules decide to play together without some kind of guidance?-I repeat my answer: "Perhaps because they are possessed of an independent, intelligent decision-making mechanism, which may or may not have been invented by your God."-DAVID: The initial cell was very complex. There is no other simple way life started:-http://invivoveritasest.blogspot.com/2013/07/a-minimum-cell-model-and-origin-of-life_4....-In your post under "Cambrian Explosion" you wrote: "Cells described in the article can evolve." Unfortunately, unless I've missed something, this is one vital area not covered. The article deals specifically with self-replication, and the enormous problem that such complexity poses for Origin of Life theories, but not with evolution. -What I found particularly interesting was the component the author calls the "Construction Planner", which "is responsible to use the information in its construction plan to coordinate the activities of various component types in the cell and to coordinate the overall progress of the cloning and the division phases of the cell replication." It is this CP which issues instructions to all the other components. If changes are to take place, i.e. the innovations which have driven evolution from single cells to humans, they would have to be the result of instructions issued by the CP. When cells combine, the CP in each of them would have to exchange information with other CPs to ensure a smooth fusion, and accordingly it would have to change the instructions given to its own set of components. I would suggest that the author's CP is what I would call the "intelligence".
Origin of Life: whole cell
by David Turell , Sunday, September 22, 2013, 21:32 (4081 days ago) @ dhw
> dhw: In your post under "Cambrian Explosion" you wrote: "Cells described in the article can evolve." Unfortunately, unless I've missed something, this is one vital area not covered. The article deals specifically with self-replication, and the enormous problem that such complexity poses for Origin of Life theories, but not with evolution.-See below: > > dhw:What I found particularly interesting was the component the author calls the "Construction Planner", which "is responsible to use the information in its construction plan to coordinate the activities of various component types in the cell and to coordinate the overall progress of the cloning and the division phases of the cell replication." It is this CP which issues instructions to all the other components. If changes are to take place, i.e. the innovations which have driven evolution from single cells to humans, they would have to be the result of instructions issued by the CP. When cells combine, the CP in each of them would have to exchange information with other CPs to ensure a smooth fusion, and accordingly it would have to change the instructions given to its own set of components. I would suggest that the author's CP is what I would call the "intelligence".-I'm prsenting the same idea. The CP is in DNA and presents intelligently provided information for evolution to proceed.
Origin of Life: it needs solar system
by David Turell , Wednesday, September 25, 2013, 15:05 (4078 days ago) @ David Turell
More wild theorizing:-"If these polyamidines hitched a ride to the Earth in earlier epochs when the Earth was being bombarded by outer Solar System material, they would come into contact with water. However, these particular polymers will resist being broken down for some time. Instead, they replace their side chains with the carbohydrates characteristic of proteins. -In this way, they create partial proteins, and this might be a way that autogenesis based on proteins began on the early Earth. The inner planets also have the advantage of containing phosphorous, sulfur and iron which are unavailable in the outer planets, and these metals speed up catalysis. -Deacon is adamant that whole solar systems are needed to generate life, not just terrestrial planets with water. Life probably needs a solar system similar to our own to start, although autogenic processes could still occur in a system that only has gas giants." - Read more at: http://phys.org/news/2013-09-autocells-life.html#jCp-Always modified by 'if'.
Origin of Life: no oxygen
by David Turell , Thursday, September 26, 2013, 15:00 (4077 days ago) @ David Turell
It is well known that early life did not utilize oxygen, but did later. When oxygen appeared is still under debate:-http://www.sciencenews.org/view/generic/id/353516/description/Oxygen_wafted_into_Earths_atmosphere_earlier_than_thought
Origin of Life: no oxygen
by David Turell , Monday, October 07, 2013, 15:27 (4066 days ago) @ David Turell
More information on the levels of oxygen. Life started without oxygen at 3.6 billion years ago. Oxygen levels rose at 2.3 billion years ago. Discussion of the interplay of variious factors:-http://www.nytimes.com/2013/10/03/science/earths-oxygen-a-mystery-easy-to-take-for-granted.html?ref=scienceandtechnology&_r=1&
Origin of Life: miracle?
by David Turell , Sunday, October 13, 2013, 15:35 (4060 days ago) @ David Turell
Rabbi Averick:-http://blogs.timesofisrael.com/atheism-of-the-gap/-"What Koonin has done is simply add a new twist to one of the profoundly flawed arguments routinely offered by atheists: The Argument from Infinite Possibilities Let me begin my explanation of this flawed argument by quoting one of the great intellectuals of the 20th century, Bertrand Russell. Russell made the following oft-quoted statement: "Many orthodox people speak as though it were the business of skeptics to disprove received dogmas rather than of dogmatists to prove them. If I were to suggest that between the Earth and Mars is a china teapot revolving about the sun in an elliptical orbit, nobody would be able to disprove my assertion provided I were careful to add that the teapot is too small to be revealed even by our most powerful telescopes. But if I were to go on to say that since my assertion cannot be disproved [no one can doubt its truth], I should rightly be thought to be talking nonsense.' "
Origin of Life: miracle?
by dhw, Monday, October 14, 2013, 16:09 (4059 days ago) @ David Turell
DAVID: Rabbi Averick:-http://blogs.timesofisrael.com/atheism-of-the-gap/-"What Koonin has done is simply add a new twist to one of the profoundly flawed arguments routinely offered by atheists: The Argument from Infinite Possibilities-Let me begin my explanation of this flawed argument by quoting one of the great intellectuals of the 20th century, Bertrand Russell. Russell made the following oft-quoted statement:-"Many orthodox people speak as though it were the business of skeptics to disprove received dogmas rather than of dogmatists to prove them. If I were to suggest that between the Earth and Mars is a china teapot revolving about the sun in an elliptical orbit, nobody would be able to disprove my assertion provided I were careful to add that the teapot is too small to be revealed even by our most powerful telescopes. But if I were to go on to say that since my assertion cannot be disproved [no one can doubt its truth], I should rightly be thought to be talking nonsense.' "-What agnostics/atheists and theists consistently fail to acknowledge is that the agnostic/atheist Russell's teapot analogy applies to all of them.-QUOTE: "Atheistic scientists are acutely aware of the difficulties involved in proposing that some type of unguided process would be able to bridge the gaping chasm between non-life and life. However, they seem totally oblivious to the fact that ... in keeping with the thrust of Russell's argument ... it is their burden to prove it true rather than being the burden of the theist to disprove the possibility."-Absolutely right. And precisely the same applies to the claim that there is an eternal, universal God, though we cannot perceive or know him. It is the theist's burden to prove it. Of course neither proposition can be proved, which is why our rabbi blithely shifts the goalposts, as follows:-QUOTE: "When the atheist says "it's possible that it happened" or "it's not impossible that it happened" he is appealing to the notion of Infinite Possibilities. As we know from the courtroom, we don't live in a world where we are required to consider infinite possibilities; we live in a world where we are only required to consider reasonable possibilities. The only reasonable possibility is that life was the result of Intelligent Creation/Design."-Hold on. We've now switched from "burden to prove" to "reasonable possibility". So if the atheist says he can see no reasonable possibility of some invisible, unknowable, eternal, infinite being capable both of creating whole universes and of cobbling together the tiniest living micro-organisms, why is his version of what is reasonable any less valid than that of the theist who sees no reasonable possibility other than there being a designer? What gives Rabbi Averick or anyone else the right to claim they know what is or isn't reasonable?-The subjectively viewed reasonableness or otherwise of the two hypotheses stems at least partly from their negation of the other viewpoint: chance is unreasonable, therefore God is reasonable. God is unreasonable, therefore chance is reasonable. As an agnostic, I find both hypotheses equally difficult to believe, but since no explanation seems to me to provide adequate solutions to the unsolved mysteries, I would not be so arrogant as to call them unreasonable.
Origin of Life: miracle?
by David Turell , Monday, October 14, 2013, 17:35 (4059 days ago) @ dhw
dhw: Hold on. We've now switched from "burden to prove" to "reasonable possibility". So if the atheist says he can see no reasonable possibility of some invisible, unknowable, eternal, infinite being capable both of creating whole universes and of cobbling together the tiniest living micro-organisms, why is his version of what is reasonable any less valid than that of the theist who sees no reasonable possibility other than there being a designer? What gives Rabbi Averick or anyone else the right to claim they know what is or isn't reasonable?-All we have is reason. Neither possibililty, chance or design is absolutely proveable. You are looking for a middle ground like Nagel. Find it! > > dhw: The subjectively viewed reasonableness or otherwise of the two hypotheses stems at least partly from their negation of the other viewpoint: chance is unreasonable, therefore God is reasonable. God is unreasonable, therefore chance is reasonable. -Again, no middle ground seems available. Forces a choice or an unwillingness to choose. Back to the picket fence.
Origin of Life: miracle?
by David Turell , Wednesday, October 23, 2013, 14:43 (4050 days ago) @ David Turell
Eugene Koonin on how tough it is to undestand anything about it:-"However, the origin of life—or, to be more precise, the origin of the first replicator systems and the origin of translation—remains a huge enigma, and progress in solving these problems has been very modest—in the case of translation, nearly negligible. Some potentially fruitful observations and ideas exist, such as the discovery of plausible hatcheries for life, the networks of inorganic compartments at hydrothermal vents, and the chemical versatility of ribozymes that fuels the RNA World hypothesis. However, these advances remain only preliminaries, even if important ones, because they do not even come close to a coherent scenario for prebiological evolution, from the first organic molecules to the first replicator systems, and from these to bona fide biological entities in which information storage and function are partitioned between distinct classes of molecules (nucleic acids and proteins, respectively). In my view, all advances notwithstanding, evolutionary biology is and will remain woefully incomplete until there is at least a plausible, even if not compelling, origin of life scenario. The search for such a solution to the ultimate enigma may take us in unexpected (and deeply counterintuitive for biologists) directions, particularly toward a complete reassessment of the relevant concepts of randomness, probability, and the possible contribution of extremely rare events, as exemplified by the cosmological perspective given in Chapter 12."-pg. 417, The Logic of Chance-http://sunsetridgemsbiology.wikispaces.com/file/view/0132542498Chance.pdf
Origin of Life: man made pipedream
by David Turell , Thursday, October 24, 2013, 15:41 (4049 days ago) @ David Turell
"Now scientists have used a set of these biomolecules to show one way in which life might have started. They found that these molecular machines, which exist in living cells today, don't do much on their own. But as soon as they add fatty chemicals, which form a primitive version of a cell membrane, it got the chemicals close enough to react in a highly specific manner. This form of self-organisation is remarkable, and figuring out how it happens may hold the key to understanding life on earth formed and perhaps how it might form on other planets."- Read more at: http://phys.org/news/2013-10-chemists-life-earth-fluke.html#jCp
Origin of Life: man made pipedream
by David Turell , Wednesday, November 06, 2013, 00:24 (4037 days ago) @ David Turell
A new pipedream based on clay but the author of the article doesn't seem to recognize that a theory about clay is over 20 years old.:- http://www.sciencedaily.com/releases/2013/11/131105132027.htm-Note, they went to life's molecules to prove point.-"To further test the idea, the Luo group has demonstrated protein synthesis in a clay hydrogel. The researchers previously used synthetic hydrogels as a "cell-free" medium for protein production. Fill the spongy material with DNA, amino acids, the right enzymes and a few bits of cellular machinery and you can make the proteins for which the DNA encodes, just as you might in a vat of cells."-Sure because you are using DNA which you can't manufacture.
Origin of Life: earliest
by David Turell , Wednesday, November 13, 2013, 00:49 (4030 days ago) @ David Turell
In Australia at 3.48 BYA:-"The Pilbara district of Western Australia constitutes one of the famous geological regions that allow insight into the early evolution of life. Mound-like deposits created by ancient photosynthetic bacteria, called stromatolites, and microfossils of bacteria have been described by scientists in detail. However, a phenomenon called microbially induced sedimentary structures, or MISS, had not previously been seen in this region. These structures are formed from mats of microbial material, much like mats seen today on stagnant waters or in coastal flats."-http://www.sciencedaily.com/releases/2013/11/131112163220.htm
Origin of Life: early minerals
by David Turell , Wednesday, November 27, 2013, 15:27 (4015 days ago) @ David Turell
What was available in the first 500 million years when life appeared:-http://www.sciencedaily.com/releases/2013/11/131125164814.htm-doesn't solve the problem
Origin of Life: chemical problems
by David Turell , Monday, December 16, 2013, 01:06 (3997 days ago) @ David Turell
An interview from the Huff Post- "Suzan Mazur: Woese is cited. His former collaborator Nigel Goldenfeld is not. But Goldenfeld mentioned to me just weeks ago at the Santa Fe Institute that he agrees with Woese regarding LUCA. Sutherland et al. seem to be talking about the same thing. They're looking for process. LUCA is a process, nothing material. [LUCA in research speak is the "last universal common ancestor"] Steve Benner: We have failed in any continuous way to provide a recipe that gets from the simple molecules that we know were present on early Earth to RNA. There is a discontinuous model which has many pieces, many of which have experimental support, but we're up against these three or four paradoxes, which you and I have talked about in the past. The first paradox is the tendency of organic matter to devolve and to give tar. If you can avoid that, you can start to try to assemble things that are not tarry, but then you encounter the water problem, which is related to the fact that every interesting bond that you want to make is unstable, thermodynamically, with respect to water. If you can solve that problem, you have the problem of entropy, that any of the building blocks are going to be present in a low concentration; therefore, to assemble a large number of those building blocks, you get a gene-like RNA -- 100 nucleotides long -- that fights entropy. And the fourth problem is that even if you can solve the entropy problem, you have a paradox that RNA enzymes, which are maybe catalytically active, are more likely to be active in the sense that destroys RNA rather than creates RNA.-Suzan Mazur: I think things are shifting to nonmaterial events.-Steve Benner: That's right. I think you're right about that. We have been trying for close to 10 years now to get what we call dynamic kinetic systems, a collection of small molecules interacting with each other, maybe some catalyzing transformations of others, a non-linear feedback, some kind of amplification and trying to find working examples, recipes, where you can actually go back and mix something and see something. We are finding all sorts of problems in getting behavior that we find useful, let alone Darwinian out of this. I'm hoping to walk out of the Gordon conference for sure with a clear understanding of how life originated by one of these schemes -- a dynamic scheme that involves A interacting with D interacting with C, back to A without my having--"- http://www.huffingtonpost.com/suzan-mazur/steve-benner-origins-souf_b_4374373.html-These are real problems for the OOL biochemical researchers. Note the suggestion in my bold that it is a process, not material.
Origin of Life: Cold RNA world
by David Turell , Monday, December 23, 2013, 16:04 (3989 days ago) @ David Turell
"The RNA enzyme's effectiveness at cold temperatures suggests ice was crucial to the first life. When a mix of RNA and metal ions freezes, growing ice crystals suck up the water, leaving tiny pockets of RNA and concentrated salt. RNA replication can happen in these pockets. "They're a little bit like artificial cells," says Holliger, and could be where evolution started.-"It certainly makes a cold RNA world something to think about," says RNA expert Adrian Ferré-D'Amaré of the National Heart, Lung and Blood Institute in Bethesda, Maryland.-"However, the theory has some weaknesses. At cold temperatures, RNA strands often stick together, making it tricky to separate them after the RNA has been copied. Primitive life would need to warm up to separate the strands, says Jack Szostak of Harvard Medical School. "It couldn't just live at continuously cold temperatures."-True, says Holliger, but there's a fix. "Ice freezes and melts all the time, so you can easily see how an RNA replicator could be enclosed and then released in a cyclical way and allowed to spread."-Szostak also points out that the enzyme only occasionally makes long strands of RNA. "I'm afraid we still have a long way to go to get a self-replicating ribozyme."-http://www.newscientist.com/article/mg22029413.600-earths-first-life-may-have-sprung-up-in-ice.html-Yes they do.
Origin of Life: RNA world
by David Turell , Tuesday, December 24, 2013, 17:56 (3988 days ago) @ David Turell
Another approach to RNA world start, using a molecule that probably didn't exist on inorganic Earth. Another ID approach that goes nowhere, except to show that intelligence is needed. The following is a pipedream:- "In the study, Hud's team investigated bases that are chemically related to the bases of modern RNA, but that might be able to spontaneously bond with ribose and assemble with other bases through the same interactions that enable DNA and RNA to store information. They homed in on a molecule called triaminopyrimidine (TAP).-"The researchers mixed TAP with ribose under conditions meant to mimic a drying pond on early Earth. TAP and ribose reacted together in high yield, with up to 80 percent of TAP being converted into nucleosides, which is the name for the ribose-base unit of RNA. Previous attempts to form a ribose-base bond with the current RNA bases in similar reactions had either failed or produced nucleosides in very low yields. "This study is important in showing a feasible step for how we get the start of an RNA-like molecule, but also how the building blocks of the first RNA-like polymers could have found each other and self-assembled in what would have been a very complex mixture of chemicals," Hud said."- Read more at: http://phys.org/news/2013-12-scientists-closer-rna.html#jCp
Origin of Life: Extreme difficulties
by David Turell , Friday, January 03, 2014, 02:36 (3979 days ago) @ David Turell
"Steve Benner: We have failed in any continuous way to provide a recipe that gets from the simple molecules that we know were present on early Earth to RNA. There is a discontinuous model which has many pieces, many of which have experimental support, but we're up against these three or four paradoxes, which you and I have talked about in the past. The first paradox is the tendency of organic matter to devolve and to give tar. If you can avoid that, you can start to try to assemble things that are not tarry, but then you encounter the water problem, which is related to the fact that every interesting bond that you want to make is unstable, thermodynamically, with respect to water. If you can solve that problem, you have the problem of entropy, that any of the building blocks are going to be present in a low concentration; therefore, to assemble a large number of those building blocks, you get a gene-like RNA -- 100 nucleotides long -- that fights entropy. And the fourth problem is that even if you can solve the entropy problem, you have a paradox that RNA enzymes, which are maybe catalytically active, are more likely to be active in the sense that destroys RNA rather than creates RNA."-http://www.huffingtonpost.com/suzan-mazur/steve-benner-origins-souf_b_4374373.html
Origin of Life: Extreme odds
by David Turell , Friday, January 03, 2014, 05:40 (3979 days ago) @ David Turell
"Probabilities of the emergence, by chance, of different versions of the breakthrough system in an O-region: a back-of-the-envelope calculation of the upper bounds -...A ribozyme replicase consisting of ~100 nucleotides is conceivable, so, in principle, spontaneous origin of such an entity in a finite universe consisting of a single O-region cannot be ruled out in this toy model (again, the rate of RNA synthesis considered here is a deliberate, gross over-estimate). The requirements for the emergence of a primitive, coupled replication-translation system, which is considered a candidate for the breakthrough stage in this paper, are much greater. At a minimum, spontaneous formation of the following is required: - Two rRNAs with a total size of at least 1000 nucleotides - Approximately 10 primitive adaptors of about 30 nucleotides each, for a total of approximately 300 nucleotides - At least one RNA encoding a replicase, about 500 nucleotides (low bound)is required. Under the notation used here, n = 1800, resulting in E <10-1018. In other words, even in this toy model that assumes a deliberately inflated rate of RNA production, the probability that a coupled translation-replication emerges by chance in a single O-region is P < 10-1018. Obviously, this version of the breakthrough stage can be considered only in the context of a universe with an infinite (or, at the very least, extremely vast) number of O-regions. The model considered here is not supposed to be realistic by any account. It only serves to illustrate the difference in the demands on chance for the origin of different versions of the breakthrough system and, hence, the connections between these versions and different cosmological models of the universe."-peer-reviewed article, The Cosmological Model of Eternal Inflation and the Transition from Chance to Biological Evolution in the History of Life, Biology Direct 2 (2007): 15, doi:10.1186/1745-6150-2-15
Origin of Life: LUCA
by David Turell , Tuesday, March 11, 2014, 15:04 (3911 days ago) @ David Turell
The last common ancestor of life (LUCA) is being studied in reverse style from what is now common to all life biochemistry. The assumption is that first life was one single form. Of course, that is disputed. But that form must have been as complex as life today:- "While this detailed understanding of LUCA is relatively recent, Darwin proposed the idea of an early common ancestor to all life in the first edition of Origin of Species, where he wrote, "Therefore I should infer from analogy that probably all the organic beings which have ever lived on this earth have descended from some one primordial form, into which life was first breathed." Although Darwin's insight is brilliant for its time, the modern view shows that LUCA is not this "primordial form," but rather a sophisticated cellular organism that, if alive today, would probably be difficult to distinguish from other extant bacteria or archaea. This means that a great detail of evolution must have taken place between the time of the origin of life and the appearance of LUCA. Continuing advances in evolutionary biology, bioinformatics, and computational biology will give us the tools to describe LUCA and the evolutionary transitions preceding it with unprecedented accuracy and detail." (my bold)- http://www.the-scientist.com//?articles.view/articleNo/39210/title/Ancient-Life-in-the-Information-Age/-Which raises the obvious issue: how does one get from inorganic matter and some amino acids to the complexity of LUCA?
Origin of Life: some current work
by David Turell , Tuesday, March 11, 2014, 15:10 (3911 days ago) @ David Turell
A chemist tries molecules that may never have been part of the process, because they work and what is in life today doesn't. Cheating? or logical?:-"In Sutherland's lab, Powner began deriving tetrose nucleotide precursors, whose sugar elements contain only four carbons, under simulated prebiotic conditions. But as soon as he started having some success, he and Sutherland decided to shift their focus to the pentoses, the sugar components of RNA and DNA. Soon, Powner generated precursor molecules of the RNA pyrimidines, cytidine (C) and uridine (U), and just a few years after that, he and Sutherland figured out a way to make the complete nucleotides.1 In both cases, the researchers avoided the use of free ribose, the sugar of modern nucleotides that is unstable under prebiotic conditions, a property that had challenged results from previous synthesis experiments. "-http://www.the-scientist.com//?articles.view/articleNo/39217/title/Matthew-Powner--Origin-Solver/
Origin of Life: LUCA
by dhw, Tuesday, March 11, 2014, 20:20 (3911 days ago) @ David Turell
DAVID: The last common ancestor of life (LUCA) is being studied in reverse style from what is now common to all life biochemistry. The assumption is that first life was one single form. Of course, that is disputed. But that form must have been as complex as life today:-"While this detailed understanding of LUCA is relatively recent, Darwin proposed the idea of an early common ancestor to all life in the first edition of Origin of Species, where he wrote, "Therefore I should infer from analogy that probably all the organic beings which have ever lived on this earth have descended from some one primordial form, into which life was first breathed." Although Darwin's insight is brilliant for its time, the modern view shows that LUCA is not this "primordial form," but rather a sophisticated cellular organism that, if alive today, would probably be difficult to distinguish from other extant bacteria or archaea. This means that a great detail of evolution must have taken place between the time of the origin of life and the appearance of LUCA. Continuing advances in evolutionary biology, bioinformatics, and computational biology will give us the tools to describe LUCA and the evolutionary transitions preceding it with unprecedented accuracy and detail. " (my bold)-http://www.the-scientist.com//?articles.view/articleNo/39210/title/Ancient-Life-in-the-...-Which raises the obvious issue: how does one get from inorganic matter and some amino acids to the complexity of LUCA?-Sorry, but this doesn't make sense to me. They want to trace evolution from the origin of life to what they call LUCA. Darwin described some "primordial form into which life was first breathed". If we descended from bacteria, and bacteria descended from whatever constituted "the origin of life", that primordial form of life ... not bacteria ... has to be LUCA. (Primordial need not mean simple. It merely denotes the earliest, original form.) So Darwin got it right. As for unprecedented accuracy and detail, how can this be possible if nobody knows the origin of life?
Origin of Life: LUCA
by David Turell , Wednesday, March 12, 2014, 01:12 (3911 days ago) @ dhw
] > > David:Which raises the obvious issue: how does one get from inorganic matter and some amino acids to the complexity of LUCA? > > dhw:Sorry, but this doesn't make sense to me. They want to trace evolution from the origin of life to what they call LUCA. Darwin described some "primordial form into which life was first breathed". If we descended from bacteria, and bacteria descended from whatever constituted "the origin of life", that primordial form of life ... not bacteria ... has to be LUCA. (Primordial need not mean simple. It merely denotes the earliest, original form.) So Darwin got it right. As for unprecedented accuracy and detail, how can this be possible if nobody knows the origin of life?-You have not caught on to my meaning of what the science genetic folks are doing. They are working backward to a complex form of life which is represented by what we see now. It looks alot like our current bacteria.There is an obviously huge gap from Darwin's primordial ooze creature, or whatever, to LUCA, which is all we can currently define. The gap origin of life to LUCA is what the abiogenesis scientists are trying to explore, recognizing that the jump os so enormous to me, at least, it looks miraculous. Recognize that LUCA is an ancient creature, but not as ancient as the first intimations of life in something totally unknown to us.
Origin of Life: LUCA
by dhw, Thursday, March 13, 2014, 11:39 (3909 days ago) @ David Turell
DAVID: You have not caught on to my meaning of what the science genetic folks are doing. They are working backward to a complex form of life which is represented by what we see now. It looks alot like our current bacteria.There is an obviously huge gap from Darwin's primordial ooze creature, or whatever, to LUCA, which is all we can currently define. The gap origin of life to LUCA is what the abiogenesis scientists are trying to explore, recognizing that the jump is so enormous to me, at least, it looks miraculous. Recognize that LUCA is an ancient creature, but not as ancient as the first intimations of life in something totally unknown to us.-The jump from bacteria to us is itself so enormous that it looks miraculous. My point, however, is that if these bacteria-like creatures were descended from earlier forms of life, it is the earlier forms of life that constitute the Last Universal Common Ancestor. It is quite illogical to say that the forms of life that led to the bacteria were somehow dislocated from the chain. Darwin's unknown "primordial form" therefore has to be LUCA. And secondly, I remain baffled by the claim that "continuing advances in evolutionary biology, bioinformatics, and computational biology will give us the tools to describe LUCA and the evolutionary transitions preceding it with unprecedented accuracy and detail. " (My bold) How can there be accuracy in tracing evolution from the origin of life to bacteria if no-one knows the origin of life?
Origin of Life: LUCA
by David Turell , Thursday, March 13, 2014, 14:24 (3909 days ago) @ dhw
edited by unknown, Thursday, March 13, 2014, 14:49
> dhw: The jump from bacteria to us is itself so enormous that it looks miraculous. My point, however, is that if these bacteria-like creatures were descended from earlier forms of life, it is the earlier forms of life that constitute the Last Universal Common Ancestor. It is quite illogical to say that the forms of life that led to the bacteria were somehow dislocated from the chain. Darwin's unknown "primordial form" therefore has to be LUCA.-True enough. I suspect that the current concept of LUCA is about as far as we can go working backward. The rest is a huge fuzzy gap in history and our knowledge, which is why there are a dozen theories and attempts with simpler molecules, and a reamergence of panspermia: -http://www.bbc.com/news/science-environment-23872765-"The molecules that combined to form genetic material are far more complex than the primordial "pre-biotic" soup of organic (carbon-based) chemicals thought to have existed on the Earth more than three billion years ago, and RNA (ribonucleic acid) is thought to have been the first of them to appear.-"Simply adding energy such as heat or light to the more basic organic molecules in the "soup" does not generate RNA. Instead, it generates tar."(my bold) -> dhw: And secondly, I remain baffled by the claim that "continuing advances in evolutionary biology, bioinformatics, and computational biology will give us the tools to describe LUCA and the evolutionary transitions preceding it with unprecedented accuracy and detail. " (My bold) How can there be accuracy in tracing evolution from the origin of life to bacteria if no-one knows the origin of life?-Perfectly put. Faith in the probability of abiogenesis is the cornerstone of the atheist's faith:-This study looks at inorganic materials producing electricity on early Earth and the science writer tells us that this is a start to understanding the black box of the integrated dance of organic molecules to create life. Poppycock, again:-http://phys.org/news/2014-03-simulating-earth-kick-started-metabolism.html-Is this how grant money is justified?
Origin of Life: LUCA
by David Turell , Tuesday, March 18, 2014, 14:06 (3904 days ago) @ David Turell
> > dhw: And secondly, I remain baffled by the claim that "continuing advances in evolutionary biology, bioinformatics, and computational biology will give us the tools to describe LUCA and the evolutionary transitions preceding it with unprecedented accuracy and detail. " (My bold) How can there be accuracy in tracing evolution from the origin of life to bacteria if no-one knows the origin of life? > > David: Perfectly put. Faith in the probability of abiogenesis is the cornerstone of the atheist's faith-Here is a contrarian's view which fits dhw's objections:-http://darwins-god.blogspot.com/2014/03/guess-evidence-for-early-evolution.html-"Strangely enough DNA replication that we see in today's cells was not present in LUCA. Instead RNA polymerases performed that job. Later in evolutionary history, today's complex and circuitous DNA replication incredibly evolved independently several times. Also the aminoacyl tRNA synthetases underwent considerable horizontal gene transfer (HGT). "This is but a small sampling of the complicated evolutionary narrative of early life. And what exactly is the evidence for this Darwinian choreography leading from OOL to LUCA and finally to the three cell domains? Well actually there is, err, none. "In fact, not only is there no evidence for this narrative, evolutionists have repeatedly been stymied in their attempts to demonstrate how it would work in the laboratory. In fact, they can't even demonstrate how it would work outside of the laboratory. Even when evolutionists are free to speculate and hypothesize with computer models or cartoon renditions, the problem still resists solution because it is too unlikely."
Origin of Life: Another dead end
by David Turell , Wednesday, April 09, 2014, 16:18 (3882 days ago) @ David Turell
Ocean vents were promising but a vital precursor isn't very abundent:-http://www.sciencedaily.com/releases/2014/04/140409094330.htm-"As for the search for the origins of life, Reeves agrees that hydrothermal vents are still a very favorable place for life to emerge, but, he says, "maybe methanethiol just wasn't a good starter dough. The hydrothermal environment is still a perfect place to support early life, and the question of how it all started is still open.'"
Origin of Life: Another dead end
by romansh , Thursday, April 10, 2014, 03:21 (3882 days ago) @ David Turell
Origin of Life: Another dead end
by David Turell , Thursday, April 10, 2014, 06:29 (3882 days ago) @ romansh
Romansh: https://www.youtube.com/watch?v=U6QYDdgP9eg-Another lab experiment showing that intelligent design can create life. It is nothing more.-Jack SzostAk himself on defining life:-In fact, a leading research scientist in origin-of-life (OOL) studies, Jack W. Szostak does not even think definitions help. Since the research has been extremely unproductive, his frustration shows in his comments,but they are very reasonable objections: Attempts to define life are irrelevant to scientific efforts to understand the origin of life. Why is this? Simply put, the study of the "origin of life" is an effort to understand the transition from chemistry to biology [organic chemistry]. This fundamental transition was the result of a lengthy pathway consisting of many stages, each of which is the subject of numerous scientific questions. Simple chemistry in diverse environments on the early earth led to the emergence of ever more complex chemistry and ultimately to the synthesis of the critical biological building blocks. [And this is a giant chasm that no research scientist has been able to cross.] At some point, the assembly of these materials into primitive cells enabled the emergence of Darwinian evolutionary behavior, followed by the gradual evolution of more complex life forms leading to modern life. Somewhere in this grand process, this series of transitions from the clearly physical and chemical to the clearly biological, it is tempting to draw a line that divides the non-living from the living. But the location of any such dividing line is arbitrary, and there is no agreement on where it should be drawn. None of this matters, however, in terms of the fundamental scientific questions concerning the transitions leading from chemistry to biology—the true unknowns and subject of origin-of-life studies. More importantly, such a definition would not further our understanding of the transitions involved or the nature of the physical and chemical forces driving those transitions. What is important in the origin of life field is understanding the transitions that led from chemistry to biology. So far, I have not seen that efforts to define life have contributed at all to that understanding (Jack W. Szostak, Howard Hughes Medical Institute and Department of Molecular Biology and Center for Computational and Integrative Biology, Massachusetts General Hospital,(http://www.jbsdonline.com).-from my new book, pg.75-76. What he is saying is that they have no idea how to do it. All frantic theory, no real results.
Origin of Life: how oxygen appeared
by David Turell , Friday, September 05, 2014, 16:14 (3733 days ago) @ David Turell
From an atmosphere of no oxygen to some, then to much:-http://phys.org/news/2014-09-trinity-geologists-re-write-earth-evolutionary.html
Origin of Life: Organic chemists don't know how
by David Turell , Wednesday, October 15, 2014, 15:44 (3693 days ago) @ David Turell
My newspaper (Hoston chronicle) jumps in:-http://christiannews.net/2014/10/13/renowned-chemist-says-evolutionists-do-not-understand-the-origin-of-life/-"“Let me tell you what goes on in the back rooms of science—with National Academy members, with Nobel Prize winners,” Tour stated. “I have sat with them, and when I get them alone, not in public—because it's a scary thing, if you say what I just said—I say, ‘Do you understand all of this, where all of this came from, and how this happens?'” "The answer he inevitably receives, Tour explained, is: “no.” "“Every time that I have sat with people who are synthetic chemists, who understand this, they go, ‘Uh-uh. Nope.'” Tour said. “And if they're afraid to say ‘yes,' they say nothing. They just stare at me, because they can't sincerely do it.” "Fair says there is an important distinction between microevolution and macroevolution—the former is clearly observable and repeatable, but the latter has never been witnessed. "“From what I can see, microevolution is a fact; we see it all around us regarding small changes within a species, and biologists demonstrate this procedure in their labs on a daily basis. Hence, there is no argument regarding microevolution,” he wrote in a blog post. “The core of the debate for me, therefore, is the extrapolation of microevolution to macroevolution.”"
Origin of Life: Organic chemists don't know how
by Balance_Maintained , U.S.A., Thursday, October 16, 2014, 03:35 (3693 days ago) @ David Turell
"“From what I can see, microevolution is a fact; we see it all around us regarding small changes within a species, and biologists demonstrate this procedure in their labs on a daily basis. Hence, there is no argument regarding microevolution,” he wrote in a blog post. “The core of the debate for me, therefore, is the extrapolation of microevolution to macroevolution.”"-Yeah... that pretty much sums it up.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: Organic chemists don't know how
by David Turell , Thursday, October 16, 2014, 06:18 (3693 days ago) @ Balance_Maintained
"“From what I can see, microevolution is a fact; we see it all around us regarding small changes within a species, and biologists demonstrate this procedure in their labs on a daily basis. Hence, there is no argument regarding microevolution,” he wrote in a blog post. “The core of the debate for me, therefore, is the extrapolation of microevolution to macroevolution.”" > > Yeah... that pretty much sums it up.-And he is considered among the top 10 biochemists in the world.-“I will tell you as a scientist and a synthetic chemist,” Tour said, “if anybody should be able to understand evolution, it is me, because I make molecules for a living, and I don't just buy a kit, and mix this and mix this, and get that. I mean, ab initio, I make molecules. I understand how hard it is to make molecules.”-http://christiannews.net/2014/10/13/renowned-chemist-says-evolutionists-do-not-understand-the-origin-of-life/
Origin of Life: Organic chemists don't know how
by dhw, Thursday, October 16, 2014, 21:28 (3692 days ago) @ Balance_Maintained
DAVID: http://christiannews.net/2014/10/13/renowned-chemist-says-evolutionists-do-not-understa... From what I can see, microevolution is a fact; we see it all around us regarding small changes within a species, and biologists demonstrate this procedure in their labs on a daily basis. Hence, there is no argument regarding microevolution,” he wrote in a blog post. “The core of the debate for me, therefore, is the extrapolation of microevolution to macroevolution.”"-TONY: Yeah... that pretty much sums it up.-It certainly does. And since no-one has ever observed macroevolution, we can only theorize about it. If we disregard the seemingly insoluble problem of how life originated, we are left with the usual choices: 1) random mutations; 2) separate creation by God; 3) dabbling by God; 4) preprogramming by God; 5) an autonomous inventive mechanism (origin unknown, but let's say for now God designed it). The very fact that we can observe microevolution suggests that there is an autonomous mechanism which works towards purposeful change, in this case enabling organisms to adapt to their environment. This is not random, so out goes 1). Options 2) and 3) would keep God mighty busy organizing every single variation, and 4) would require zillions and zillions of programmes to be built into the first cells. These options all seem pretty unlikely to me. That leaves 5). So maybe an autonomous mechanism that can adapt can also invent.
Origin of Life: Organic chemists don't know how
by David Turell , Friday, October 17, 2014, 02:21 (3692 days ago) @ dhw
TONY: Yeah... that pretty much sums it up. > > dhw: It certainly does. And since no-one has ever observed macroevolution, we can only theorize about it. If we disregard the seemingly insoluble problem of how life originated, we are left with the usual choices: 1) random mutations; 2) separate creation by God; 3) dabbling by God; 4) preprogramming by God; 5) an autonomous inventive mechanism (origin unknown, but let's say for now God designed it). The very fact that we can observe microevolution suggests that there is an autonomous mechanism which works towards purposeful change, in this case enabling organisms to adapt to their environment. This is not random, so out goes 1). Options 2) and 3) would keep God mighty busy organizing every single variation, and 4) would require zillions and zillions of programmes to be built into the first cells. These options all seem pretty unlikely to me. That leaves 5). So maybe an autonomous mechanism that can adapt can also invent.-I agree about (1). With (2) God wouldn't need evolution so it is out. (3 & 4) are reasonable and probably within God's power, but then for me it makes the mechanism of evolution a confusing choice for God. Heck, just direct it all the time, which is a sub-choice (3a & 4a). (5) is certainly possible if semi-autonomous as I have described.-With 'autonomous' you are also trying to have your cake and eating it. The jump from Ediacarens to Cambrian animals is a jump your IM doesn't explain. The planning is too great, and trial and error itty-bittiness is not present in a copious fossil record. To backtrack slightly since I am trying to equate evolution with a plan by God, the planning for first life is an even greater gap than the Ed-Cam jump. Both events show the same handiwork. And your approach can't touch that with a fork!
Origin of Life: Organic chemists don't know how
by Balance_Maintained , U.S.A., Friday, October 17, 2014, 03:26 (3692 days ago) @ David Turell
dhw: It certainly does. And since no-one has ever observed macroevolution, we can only theorize about it. If we disregard the seemingly insoluble problem of how life originated, we are left with the usual choices: 1) random mutations; 2) separate creation by God; 3) dabbling by God; 4) preprogramming by God; 5) an autonomous inventive mechanism (origin unknown, but let's say for now God designed it). The very fact that we can observe microevolution suggests that there is an autonomous mechanism which works towards purposeful change, in this case enabling organisms to adapt to their environment. This is not random, so out goes 1). Options 2) and 3) would keep God mighty busy organizing every single variation, and 4) would require zillions and zillions of programmes to be built into the first cells. These options all seem pretty unlikely to me. That leaves 5). So maybe an autonomous mechanism that can adapt can also invent. > >David: I agree about (1). With (2) God wouldn't need evolution so it is out. (3 & 4) are reasonable and probably within God's power, but then for me it makes the mechanism of evolution a confusing choice for God. Heck, just direct it all the time, which is a sub-choice (3a & 4a). (5) is certainly possible if semi-autonomous as I have described. > > With 'autonomous' you are also trying to have your cake and eating it. The jump from Ediacarens to Cambrian animals is a jump your IM doesn't explain. The planning is too great, and trial and error itty-bittiness is not present in a copious fossil record. To backtrack slightly since I am trying to equate evolution with a plan by God, the planning for first life is an even greater gap than the Ed-Cam jump. Both events show the same handiwork. And your approach can't touch that with a fork!-I am not certain how you two view 2), 3), and 4) as mutually exclusive. If I were going to do 2) I would certainly use 4) to do it. When I was done, I might even go back and use 3) to tweak and fine tune some things, or if necessary, to intervene at key moments to make sure things went the way I wanted them to.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: Organic chemists don't know how
by David Turell , Friday, October 17, 2014, 06:04 (3692 days ago) @ Balance_Maintained
Tony: I am not certain how you two view 2), 3), and 4) as mutually exclusive. If I were going to do 2) I would certainly use 4) to do it. When I was done, I might even go back and use 3) to tweak and fine tune some things, or if necessary, to intervene at key moments to make sure things went the way I wanted them to.-I think some process of evolution occurred. I just can't decide how God guided it. Pre-programming and dabbling certainly are within His powers. Or simply self-direct all the way from single cell to humans. But why then give the appearance of an evoutionary process. I am sure humans were the goal. But a semi-independent inventive mechanism guided by God is also a possibility. If God created everything in life, why give the process of creation the appearance of evolution?
Origin of Life: Organic chemists don't know how
by Balance_Maintained , U.S.A., Friday, October 17, 2014, 20:46 (3691 days ago) @ David Turell
David: I think some process of evolution occurred. I just can't decide how God guided it. Pre-programming and dabbling certainly are within His powers. Or simply self-direct all the way from single cell to humans. But why then give the appearance of an evoutionary process. I am sure humans were the goal. But a semi-independent inventive mechanism guided by God is also a possibility. If God created everything in life, why give the process of creation the appearance of evolution?-I am not so sure that he did. That is an assumption that we have made without ever observing it occurring. The better question is why do we assume that evolution happened without ever having directly observed it? The same evidence used for evolution also distinctly support design by a common designer.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: Organic chemists don't know how
by David Turell , Saturday, October 18, 2014, 01:19 (3691 days ago) @ Balance_Maintained
David: If God created everything in life, why give the process of creation the appearance of evolution? > > Tony:I am not so sure that he did. That is an assumption that we have made without ever observing it occurring. The better question is why do we assume that evolution happened without ever having directly observed it? The same evidence used for evolution also distinctly support design by a common designer-The appearance of simple to complex, from very old single-celled to humans, all layered in rock with five or six aging isotope methods all agreeing within 10-20 % is strongly suggestive of some form of evolution, but not Darwin's.
Origin of Life: Organic chemists don't know how
by Balance_Maintained , U.S.A., Saturday, October 18, 2014, 01:52 (3691 days ago) @ David Turell
David: If God created everything in life, why give the process of creation the appearance of evolution? > > > > Tony:I am not so sure that he did. That is an assumption that we have made without ever observing it occurring. The better question is why do we assume that evolution happened without ever having directly observed it? The same evidence used for evolution also distinctly support design by a common designer > > David: The appearance of simple to complex, from very old single-celled to humans, all layered in rock with five or six aging isotope methods all agreeing within 10-20 % is strongly suggestive of some form of evolution, but not Darwin's.-The fact that your car has rubber wheels and tubing, pre-fabricated frames and metal components, and runs on petroleum which is formed from a completely separate process and added later to make it work does not eliminate the need for each stage of the process to be separately designed and implemented. Only an ignorant fool would suggest that cars are made from whole cloth as is without any prep work needing to be done to the build up the components that go into making it. You are not foolish, and life is a million times more complicated than a car. -This idea that it either has to be evolution or *POOF* instantaneous perfection and simultaneous creation of everything is part of the problem with these discussions.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: Organic chemists don't know how
by David Turell , Saturday, October 18, 2014, 05:05 (3691 days ago) @ Balance_Maintained
>Tony: This idea that it either has to be evolution or *POOF* instantaneous perfection and simultaneous creation of everything is part of the problem with these discussions.-Please explain your reasoning. thanks
Origin of Life: Organic chemists don't know how
by Balance_Maintained , U.S.A., Saturday, October 18, 2014, 05:54 (3691 days ago) @ David Turell
> >Tony: This idea that it either has to be evolution or *POOF* instantaneous perfection and simultaneous creation of everything is part of the problem with these discussions. > > Please explain your reasoning. thanks-I have always maintained that the creative process was not instantaneous, and this fact is borne out by both our own science and the scriptures. There was a definitive process that was followed, step by step. While the Bible only really gives a rough overview of it (and one that is remarkably consistent with modern science), it describes it as a process. Each piece, each step of that process had to occur before the next could take place. We see this pattern in virtually every corner of creation. In fact, entire sections of our genome is relegated to making sure that things happen at the right time and in the right order. If they don't things go horribly wrong. -So why is it then that when we talk about Intelligent design, that the options are always macro-evolution from a single cell to Humans, or *Poof* god did it all instantaneously like a genie? If we know that each of the various chemical and biological processes and types of life have pre-requisites, why do we insist that everything was made to work 'just-so' immediately.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: Organic chemists don't know how
by David Turell , Saturday, October 18, 2014, 11:45 (3690 days ago) @ Balance_Maintained
> Tony: So why is it then that when we talk about Intelligent design, that the options are always macro-evolution from a single cell to Humans, or *Poof* god did it all instantaneously like a genie? If we know that each of the various chemical and biological processes and types of life have pre-requisites, why do we insist that everything was made to work 'just-so' immediately.-Thanks for the explanation. That is not the way the ID folks look at it. The Cambrian Gap is the major arguing point. Science does not know how the Cambrian sea animals were developed. There are no intermediate fossils, none, nada! Darwininan 'chance' can't possibly work or explain the gap without any fossil evidence. What is left is purpose and design, planning by God to create the genomes that are required. It is one of the major reasons I believe there is a God. The IM approach is an attempt to imagine a way God could set it up in advance, rather than constant hands-on. -Your comments about the Bible and science are right on. Genesis certainly describes the Big Bang theory.
Origin of Life: Organic chemists don't know how
by dhw, Friday, October 17, 2014, 17:25 (3691 days ago) @ Balance_Maintained
dhw: ...since no-one has ever observed macroevolution, we can only theorize about it. If we disregard the seemingly insoluble problem of how life originated, we are left with the usual choices: 1) random mutations; 2) separate creation by God; 3) dabbling by God; 4) preprogramming by God; 5) an autonomous inventive mechanism (origin unknown, but let's say for now God designed it). The very fact that we can observe microevolution suggests that there is an autonomous mechanism which works towards purposeful change, in this case enabling organisms to adapt to their environment. This is not random, so out goes 1). Options 2) and 3) would keep God mighty busy organizing every single variation, and 4) would require zillions and zillions of programmes to be built into the first cells. These options all seem pretty unlikely to me. That leaves 5). So maybe an autonomous mechanism that can adapt can also invent.-DAVID: I agree about (1). With (2) God wouldn't need evolution so it is out. (3 & 4) are reasonable and probably within God's power, but then for me it makes the mechanism of evolution a confusing choice for God. Heck, just direct it all the time, which is a sub-choice (3a & 4a). (5) is certainly possible if semi-autonomous as I have described. With 'autonomous' you are also trying to have your cake and eating it. The jump from Ediacarens to Cambrian animals is a jump your IM doesn't explain. The planning is too great, and trial and error itty-bittiness is not present in a copious fossil record.-We have been over this before, when I listed the possible reasons for there being no fossil record to explain the jump. Still with my theist hat on, if God was clever enough to preprogramme the Cambrian jump into the first cells of 3.7 billion years ago, why do you insist that he can't have been clever enough to invent a mechanism that would work out its own way to cope with or exploit the new conditions? DAVID: To backtrack slightly since I am trying to equate evolution with a plan by God, the planning for first life is an even greater gap than the Ed-Cam jump. Both events show the same handiwork. And your approach can't touch that with a fork!-We are dealing with hypotheses that explain how evolution might work. I explicitly wrote, and you quoted: “If we disregard the seemingly insoluble problem of how life originated, we are left with the usual choices.” My approach is not meant to touch on that subject, but all through this discussion I have adopted a theistic stance. If your God invented the inventive mechanism, then of course he invented life. Our subject here is whether evolution has a purpose, and whether the mechanism is autonomous (a very clear concept) or “semi-autonomous”, which is just about as fluffy as it gets! TONY: I am not certain how you two view 2), 3) and 4) as mutually exclusive. If I were going to do 2) I would certainly use 4) to do it. When I was done, I might even go back and use 3) to tweak and fine tune some things, or if necessary, to intervene at key moments to make sure things went the way I wanted them to.-I must say I'd never thought of 2) and 4) as being identical, but it simplifies the argument. Preprogramming would follow precisely the same course as evolution: we'd have no way of knowing whether organisms evolved of their own accord or were following instructions. However, I find it hard to believe that God could put into the first living cells the zillions and zillions of instructions necessary to create every life form and mode of behaviour for the next 3.7 billion years, allowing for every change in the environment. I know you would confine this to “kinds” and not variations, but as I pointed out above, if there is an autonomous mechanism for microevolution, then maybe your God created the same mechanism to drive macroevolution. The idea that really interests me, though, is that of God making sure things went the way he wanted them to. This was the tantalising point at which you left us last time, on the “Evolution v Creationism” thread. You said there: “I never claimed that everything was created towards the purpose of creating humans. Humanity was created for a purpose, that of being stewards of the Earth. Everything else also has a purpose. Most of the time it is simply maintaining homeostasis [...] but other times it is as an active participant in the development of the world. Humanity was seen as the crowning achievement, not the end goal.” -David, who insists that humanity is the end goal, asked where your view is stated in the bible. I asked what you meant by “the development of the world” (which fits in beautifully with my whole concept of an autonomous inventive mechanism endlessly creating new forms), and what you thought really was God's “end goal".
Origin of Life: Organic chemists don't know how
by David Turell , Friday, October 17, 2014, 18:51 (3691 days ago) @ dhw
dhw: We have been over this before, when I listed the possible reasons for there being no fossil record to explain the jump. Still with my theist hat on, if God was clever enough to preprogramme the Cambrian jump into the first cells of 3.7 billion years ago, why do you insist that he can't have been clever enough to invent a mechanism that would work out its own way to cope with or exploit the new conditions?-We have been over this before. A totally autonomous IM cannot possibly have the planning capacity for the Cambrian gap, unless given guidelines to follow. Of course God's capacity for planning can do it, or if He invented an IM, He gave it planning guidelines to follow, making it semi-autonomous.-> > dhw: We are dealing with hypotheses that explain how evolution might work. ..... If your God invented the inventive mechanism, then of course he invented life. Our subject here is whether evolution has a purpose, and whether the mechanism is autonomous (a very clear concept) or “semi-autonomous”, which is just about as fluffy as it gets!-I view yours as just as fluffy. The Cambrian gap requires huge amounts of information developed in the genome to plan those changes in new organ development. The information neccessary to jump the gap has to be pre-implanted or inserted as the gap is jumped. (That is, pre-programmed of dabbled) I'm trying to escape those by imagining a semi-autonomous IM, as described. In my mind it would work. > > TONY: I am not certain how you two view 2), 3) and 4) as mutually exclusive. If I were going to do 2) I would certainly use 4) to do it. When I was done, I might even go back and use 3) to tweak and fine tune some things, or if necessary, to intervene at key moments to make sure things went the way I wanted them to. > > dhw: The idea that really interests me, though, is that of God making sure things went the way he wanted them to. This was the tantalising point at which you left us last time, on the “Evolution v Creationism” thread. You said there: > “I never claimed that everything was created towards the purpose of creating humans. Humanity was created for a purpose, that of being stewards of the Earth. Everything else also has a purpose. Most of the time it is simply maintaining homeostasis [...] but other times it is as an active participant in the development of the world. Humanity was seen as the crowning achievement, not the end goal.”-Tony's view is correct. that is why I use the term semi-autonomous. God knows what the end points are. > > dhw: David, who insists that humanity is the end goal, asked where your view is stated in the bible. I asked what you meant by “the development of the world” (which fits in beautifully with my whole concept of an autonomous inventive mechanism endlessly creating new forms), and what you thought really was God's “end goal".-As the stewards of the Earth we are that goal.
Origin of Life: Organic chemists don't know how
by Balance_Maintained , U.S.A., Friday, October 17, 2014, 21:06 (3691 days ago) @ dhw
DHW: The idea that really interests me, though, is that of God making sure things went the way he wanted them to. This was the tantalising point at which you left us last time, on the “Evolution v Creationism” thread. You said there: > “I never claimed that everything was created towards the purpose of creating humans. Humanity was created for a purpose, that of being stewards of the Earth. Everything else also has a purpose. Most of the time it is simply maintaining homeostasis [...] but other times it is as an active participant in the development of the world. Humanity was seen as the crowning achievement, not the end goal.” > > David, who insists that humanity is the end goal, asked where your view is stated in the bible. I asked what you meant by “the development of the world” (which fits in beautifully with my whole concept of an autonomous inventive mechanism endlessly creating new forms), and what you thought really was God's “end goal".-Actually,the purpose of humans is clearly stated in (Genesis 1:26-31; 2:5-7,15, 19-20). As for whether or not Jehovah was finished, check out (Genesis 2:1,2)The heavens and earth were completed, sure, but does it say that he was done with everything? No. It says he hit a good stopping point and took a break to rest. In Genesis 9:2,3, Jehovah gave us animals to eat, but also made them afraid of us for their own self-preservation. In Hosea 2:18 there is a prophecy that the fear will be removed in order that Isa. 11:6-9; 65:25 can be fulfilled. As for there being more work for him to do, that is admittedly speculation on my part. His purpose was interrupted back in the garden of Eden and the Bible never says that he was done with his creative works, just that he took a break.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: Organic chemists don't know how
by dhw, Saturday, October 18, 2014, 18:20 (3690 days ago) @ Balance_Maintained
TONY: “I never claimed that everything was created towards the purpose of creating humans. Humanity was created for a purpose, that of being stewards of the Earth. Everything else also has a purpose. Most of the time it is simply maintaining homeostasis [...] but other times it is as an active participant in the development of the world. Humanity was seen as the crowning achievement, not the end goal.” -Dhw: David, who insists that humanity is the end goal, asked where your view is stated in the bible. I asked what you meant by “the development of the world” (which fits in beautifully with my whole concept of an autonomous inventive mechanism endlessly creating new forms), and what you thought really was God's “end goal".-TONY: Actually,the purpose of humans is clearly stated in (Genesis 1:26-31; 2:5-7,15, 19-20). As for whether or not Jehovah was finished, check out (Genesis 2:1,2)The heavens and earth were completed, sure, but does it say that he was done with everything? No. It says he hit a good stopping point and took a break to rest. In Genesis 9:2,3, Jehovah gave us animals to eat, but also made them afraid of us for their own self-preservation. In Hosea 2:18 there is a prophecy that the fear will be removed in order that Isa. 11:6-9; 65:25 can be fulfilled. As for there being more work for him to do, that is admittedly speculation on my part. His purpose was interrupted back in the garden of Eden and the Bible never says that he was done with his creative works, just that he took a break.-I understand your view that humans are meant to be the stewards of the Earth and that God hasn't finished his work. But you keep talking of God's purpose, and you have associated it with the development of the world. What do you mean by the development of the world, and what do you think his ultimate purpose is?
Origin of Life: Organic chemists don't know how
by Balance_Maintained , U.S.A., Saturday, October 18, 2014, 21:32 (3690 days ago) @ dhw
DHW: I understand your view that humans are meant to be the stewards of the Earth and that God hasn't finished his work. But you keep talking of God's purpose, and you have associated it with the development of the world. What do you mean by the development of the world, and what do you think his ultimate purpose is?-That is something that is not actually revealed in the bible. There are clues and hints, but nothing concrete. The closest the bible comes to giving an ultimate purpose for everything is:-Col 1:16 For in him (Christ) all things were created: things in heaven and on earth, visible and invisible, whether thrones or powers or rulers or authorities; all things have been created through him and for him.-The closest the bible comes to stating an ultimate purpose is that of a Father creating a gift with and for his son.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: Pie in the sky research
by David Turell , Thursday, October 30, 2014, 14:52 (3678 days ago) @ Balance_Maintained
A lab has found an RNAzyme that can make left-handed RNA, using a start of a quadrllion possibilities, and guided it from there. This is intelligent design par excellance, and they propose it happened naturally!-http://www.sciencedaily.com/releases/2014/10/141029141216.htm-"He started with a soup of about a quadrillion (1015) short RNA molecules. Their sequences were essentially random, and all were of right-handed chirality. "We set it up so that the molecules that could catalyze a joining reaction with left-handed RNA could be pulled out of solution and then amplified," Sczepanski said. "After just 10 of these selection-and-amplification rounds, the researchers had a strong candidate ribozyme. They then expanded the size of its core region, put it through six more selection rounds and trimmed the extraneous nucleotides. The result: an 83-nucleotide ribozyme that was only moderately sequence-specific and could reliably knit a test segment of left-handed RNA to a template -- about a million times faster than would have happened without enzyme assistance."
Origin of Life: Continental drift!
by David Turell , Sunday, November 09, 2014, 00:18 (3669 days ago) @ David Turell
Unbelievable: Now continental drift caused the Cambrian explosion. Moving continents stimulate the genome to create new forms five times faster. What foolishness:-http://www.livescience.com/48657-geographic-shift-explains-cambrian-explosion.html?cmpid=558613
Origin of Life: foolishness
by David Turell , Monday, November 24, 2014, 14:16 (3653 days ago) @ David Turell
A complex process involving grinding of crystals provides proper handedness for a start of life:-http://www.nature.com/ncomms/2014/141121/ncomms6543/full/ncomms6543.html-" Considering the general principle that any organic reaction is reversible and that synthetic products usually are more complex and less soluble than their precursors, we envision that a wider range of chiral molecules is accessible in enantiopure form through this new approach. The facile isolation of the crystalline enantiopure product with high yield renders laborious work-up procedures obsolete and makes this an appealing method to obtain enantiopure pharmaceutically relevant building blocks. Moreover, in view of the achiral reaction conditions, this reaction proves that an enantiopure compound can simply emerge from an achiral abiotic setting. Precipitation-induced chiral amplification during synthesis therefore could provide a novel view on the initial stage of the primitive chemical processes, which ultimately led to the chemical foundation of life."-It is wonderful what intelligent design in the lab can do.
Origin of Life: new RNAzyme
by David Turell , Friday, December 05, 2014, 20:32 (3642 days ago) @ David Turell
This article like most others is whistling in the dark. We cannot relive the history of the start of life. We won't know if a method found in the lab is the correct one, only that it can be done. The article does not mention the 100% left-handed amino acids that life deals with. That is just as big a problem as a right handed RNAzyme. And besides all the work proves so far is that it requires intelligent design. " I am skeptical that life began in this way”, Szostak's comment is the correct way to look at this. And finally there is not much evidence that there were many organic compounds on the early Earth when life started.-http://www.scientificamerican.com/article/new-twist-in-life-s-start-could-aid-efforts-to-make-it-from-scratch/?WT.mc_id=SA_DD_20141205
Origin of Life: zapping by laser
by David Turell , Tuesday, December 09, 2014, 00:08 (3639 days ago) @ David Turell
Hitting clay with a blast of laser, imitating a blast of a huge meteorite:- "The researchers zapped clay and a chemical soup with the laser to simulate the energy of a speeding asteroid smashing into the planet. They ended up creating what can be considered crucial pieces of the building blocks of life.-"The findings do not prove that this is how life started on Earth about 4 billion years ago, and some scientists were unimpressed with the results. But the experiment does bolster the long-held theory.-"These findings suggest that the emergence of terrestrial life is not the result of an accident but a direct consequence of the conditions on the primordial Earth and its surroundings," the researchers concluded in the study published Monday in the journal Proceedings of the National Academy of Sciences.-"The laser-zapping produced all four chemical bases needed to make RNA, a simpler relative of DNA, the blueprint of life. From these bases, there are many still-mysterious steps that must happen for life to emerge. (my bold) But this is a potential starting point in that process."- Read more at: http://phys.org/news/2014-12-scientists-re-create-life.html#jCp
Origin of Life: oil droplets
by David Turell , Tuesday, December 09, 2014, 15:07 (3638 days ago) @ David Turell
A strange substitute for studying how life began, oil droplets.-"Glasgow University chemist Lee Cronin, who led the work, told WIRED.co.uk that the experiment is an important demonstration of the principles that may have spurred nonliving components to give rise to living things. “Right now, evolution only applies to complex cells with many terabytes of information but the open question is where did the information come from?” he said. “We have shown that it is possible to evolve very simple chemistries with little information.” (See “RNA World 2.0,” The Scientist, March 2014.) Cronin and his colleagues published the work yesterday (December 8) in Nature Communications." (as usual, my bold)-http://www.the-scientist.com//?articles.view/articleNo/41619/title/Evolution-in-Oil-Droplets/-No answer (as usual) as to where the information came from. At least they recognize there is lots and lots of information coded into the genome.
Origin of Life: early atmosphere
by David Turell , Thursday, January 15, 2015, 15:21 (3601 days ago) @ David Turell
Not much oxygen:-http://www.sciencedaily.com/releases/2015/01/150114115247.htm-"In the new study, a team led by researchers from McGill's Earth and Planetary Sciences Department, used mass spectrometry to measure the amounts of different isotopes of sulfur in rocks from the Nuvvuagittuq belt. The results enabled the scientists to determine that the sulfur in these rocks, which are at least 3.8 billion years old and possibly 500 million years older, had been cycled through Earth's early atmosphere, showing the air at the time was extremely oxygen-poor compared to today, and may have had more methane and carbon dioxide.-"We found that the isotopic fingerprint of this atmospheric cycling looks just like similar fingerprints from rocks that are a billion to 2 billion years younger," said Emilie Thomassot, a former postdoctoral researcher at McGill and lead author of the paper. Emilie Thomassot is now with the Centre de Recherches Pétrographiques et Géochimiques (CRPG) in Nancy France.-"Those younger rocks contain clear signs of microbial life and there are a couple of possible interpretations of our results," says Boswell Wing, an associate professor at McGill and co-author of the new study. "One interpretation is that biology controlled the composition of the atmosphere on early Earth, with similar microbial biospheres producing the same atmospheric gases from Earth's infancy to adolescence. We can't rule out, however, the possibility that the biosphere was decoupled from the atmosphere. In this case geology could have been the major player in setting the composition of ancient air, with massive volcanic eruptions producing gases that recurrently swamped out weak biological gas production."-"The research team is now extending its work to try to tell whether the evidence supports the "biological" or the "geological" hypothesis -- or some combination of both. In either case Emilie Thomassot says, the current study "demonstrates that the Nuvvuagittuq sediments record a memory of Earth's surface environment at the very dawn of our planet. And surprisingly, this memory seems compatible with a welcoming terrestrial surface for life.""
Origin of Life: early atmosphere
by Balance_Maintained , U.S.A., Thursday, January 15, 2015, 16:14 (3601 days ago) @ David Turell
Not much oxygen: > > http://www.sciencedaily.com/releases/2015/01/150114115247.htm > > "In the new study, a team led by researchers from McGill's Earth and Planetary Sciences Department, used mass spectrometry to measure the amounts of different isotopes of sulfur in rocks from the Nuvvuagittuq belt. The results enabled the scientists to determine that the sulfur in these rocks, which are at least 3.8 billion years old and possibly 500 million years older, had been cycled through Earth's early atmosphere, showing the air at the time was extremely oxygen-poor compared to today, and may have had more methane and carbon dioxide. > > "We found that the isotopic fingerprint of this atmospheric cycling looks just like similar fingerprints from rocks that are a billion to 2 billion years younger," said Emilie Thomassot, a former postdoctoral researcher at McGill and lead author of the paper. Emilie Thomassot is now with the Centre de Recherches Pétrographiques et Géochimiques (CRPG) in Nancy France. > > "Those younger rocks contain clear signs of microbial life and there are a couple of possible interpretations of our results," says Boswell Wing, an associate professor at McGill and co-author of the new study. "One interpretation is that biology controlled the composition of the atmosphere on early Earth, with similar microbial biospheres producing the same atmospheric gases from Earth's infancy to adolescence. We can't rule out, however, the possibility that the biosphere was decoupled from the atmosphere. In this case geology could have been the major player in setting the composition of ancient air, with massive volcanic eruptions producing gases that recurrently swamped out weak biological gas production." > -A third interpretation is that the atmosphere trapped in the two rocks is the same atmosphere because it was captured at the same time, and that there dating methods are wrong.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early atmosphere
by David Turell , Thursday, January 15, 2015, 19:07 (3601 days ago) @ Balance_Maintained
> Tony: A third interpretation is that the atmosphere trapped in the two rocks is the same atmosphere because it was captured at the same time, and that there dating methods are wrong.-I know you don't trust the dating methods. How old do you think the Earth is?
Origin of Life: early atmosphere
by Balance_Maintained , U.S.A., Friday, January 16, 2015, 15:27 (3600 days ago) @ David Turell
> > Tony: A third interpretation is that the atmosphere trapped in the two rocks is the same atmosphere because it was captured at the same time, and that there dating methods are wrong. > >David: I know you don't trust the dating methods. How old do you think the Earth is?-This is one of those areas where I am quite happy to say both "I don't know" and "In some ways it doesn't even matter." It is not simply that I don't trust dating methods, it is just that there is a lot of circular reasoning, assumptions, and even incongruity in the data derived from the methods. If the data were solid, with solid congruity even using the SAME method repeatedly, much less using different methods, I would likely be more inclined to trust the dating methods. However, they are not, so you are correct that I do not trust them. I just want to point out that my mistrust has nothing to do with pre-conceived notions of how old the Earth is or with my personal religious beliefs. I disagree with them on a purely scientific basis. However, in this case I was merely wanting to point out the simplest and most likely reason that the data does not fit the theories.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early atmosphere
by David Turell , Friday, January 16, 2015, 18:18 (3600 days ago) @ Balance_Maintained
> Tony: This is one of those areas where I am quite happy to say both "I don't know" and "In some ways it doesn't even matter." It is not simply that I don't trust dating methods, it is just that there is a lot of circular reasoning, assumptions, and even incongruity in the data derived from the methods..... I disagree with them on a purely scientific basis. However, in this case I was merely wanting to point out the simplest and most likely reason that the data does not fit the theories.-My problem is I am not trained enough in physics to see the problems. I have accepted the statements that the five/six isotopic methods all agree within 10-20%.
Origin of Life: early atmosphere
by Balance_Maintained , U.S.A., Saturday, January 17, 2015, 14:17 (3599 days ago) @ David Turell
I know this is a biased source, but the explanation of WHY the methods are truly messed up is quite good.-But, because I want to make sure to catch some information NOT biased by a religious view:-http://www.astorehouseofknowledge.info/w/Research:Radioactive_dating
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early atmosphere
by David Turell , Saturday, January 17, 2015, 14:47 (3599 days ago) @ Balance_Maintained
Tony; I know this is a biased source, but the explanation of WHY the methods are truly messed up is quite good. > > But, because I want to make sure to catch some information NOT biased by a religious view: > > http://www.astorehouseofknowledge.info/w/Research:Radioactive_dating-The website you give is a "Biblical-view" source which mentions the 'flood', and is completely biased as I read it. I know there are inconsistences in dating, and I've had geologic courses in the Grand canyon itself, so I am also biased, but without enough background to debate it further.
Origin of Life: early atmosphere
by Balance_Maintained , U.S.A., Saturday, January 17, 2015, 15:20 (3599 days ago) @ David Turell
Yes, I acknowledged that the first one was biased. The second one showed no religious leanings that I could detect, and neither does this one.
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What is the purpose of living? How about, 'to reduce needless suffering. It seems to me to be a worthy purpose.
Origin of Life: early atmosphere
by David Turell , Saturday, January 17, 2015, 21:30 (3599 days ago) @ Balance_Maintained
tony: Yes, I acknowledged that the first one was biased. The second one showed no religious leanings that I could detect, and neither does this one.-Fair enough. I understand the possible variability in interpretation, but C-14 only dates back up to 40,000 years ago or slightly more. The maim issues is dating to be really concerned about are at least 100,000 years ago and beyond.
Origin of Life: early atmosphere
by David Turell , Tuesday, January 27, 2015, 17:38 (3589 days ago) @ David Turell
Subsea tubules. Works in the lab because they start with DNA! Pipe dreams!-http://www.sciencedaily.com/releases/2015/01/150127111157.htm-"How and in what habitats did the first life-forms arise on the young Earth? One crucial precondition for the origin of life is that comparatively simple biomolecules must have had opportunities to form more complex structures, which were capable of reproducing themselves and could store genetic information in a chemically stable form. But this scenario requires some means of accumulating the precursor molecules in highly concentrated form in solution. In the early oceans, such compounds would have been present in vanishingly low concentrations. But LMU physicists led by Professor Dieter Braun now describe a setting which provides the necessary conditions. They show experimentally that pore systems on the seafloor that were heated by volcanic activity could have served as reaction chambers for the synthesis of RNA molecules, which serve as carriers of hereditary information in the biosphere today.-"The key requirement is that the heat source be localized on one side of the elongated pore, so that the water on that side is significantly warmer than that on the other," says Braun. Preformed biomolecules that are washed into the pore can then be trapped, and concentrated, by the action of the temperature gradient- thus fulfilling a major prerequisite for the formation and replication of more complex molecular structures."
Origin of Life: odds, chance vs. design
by David Turell , Friday, February 06, 2015, 01:37 (3580 days ago) @ David Turell
The chemistry in this article is correct. I know it is a creation site, but its facts are correct. The RNA research is always in controlled conditions in a lab which overcome all the problems:-http://www.icr.org/article/chemistry-by-chance-formula-for-non-life/-"The chemical control needed for the formation of a specific sequence in a polymer chain is just not possible through random chance. The synthesis of proteins and DNA/RNA in the laboratory requires the chemist to control the reaction conditions, to thoroughly understand the reactivity and selectivity of each component, and to carefully control the order of addition of the components as the chain is building in size. The successful formation of proteins and DNA/RNA in some imaginary primordial soup would require the same level of control as in the laboratory, but that level of control is not possible without a specific chemical controller. -"Any one of these eight problems could prevent the evolutionary process from forming the chemicals vital for life. Chirality alone would derail it. This is why evolutionary scientists hope you don't know chemistry. Darwin asserted that random, accidental natural processes formed life, but the principles of chemistry contradict this idea. The building blocks of life cannot be manufactured by accident."-"Suzan Mazur: Origin of life shifting to “nonmaterial events”? - December 15, 2013 Excerpt: The first paradox is the tendency of organic matter to devolve and to give tar. If you can avoid that, you can start to try to assemble things that are not tarry, but then you encounter the water problem, which is related to the fact that every interesting bond that you want to make is unstable, thermodynamically, with respect to water. If you can solve that problem, you have the problem of entropy, that any of the building blocks are going to be present in a low concentration; therefore, to assemble a large number of those building blocks, you get a gene-like RNA — 100 nucleotides long — that fights entropy. And the fourth problem is that even if you can solve the entropy problem, you have a paradox that RNA enzymes, which are maybe catalytically active, are more likely to be active in the sense that destroys RNA rather than creates RNA."-http://www.uncommondescent.com.....al-events/-Life was designed. There is no other conclusion.
Origin of Life: how did plants get onto land
by David Turell , Sunday, December 20, 2015, 01:40 (3263 days ago) @ David Turell
Think about it: if life started at sea, how did plants get up onto land. They don't have fin/legs like some fish did and do. Obviously algae could wash up on the shoreline and take hold. A new study considers how algae may have accomplished the feat:- http://www.sciencedaily.com/releases/2015/12/151216134406.htm-"Plant biologists agree that it all began with green algae. At some point in our planet's history, the common ancestor of trees, ferns, and flowers developed an alternating life cycle--presumably allowing their offspring to float inland and conquer Earth. But on December 16 in Trends in Plant Science, Danish scientists argue that some green algae had been hanging out on land hundreds of millions of years before this adaptation and that land plants actually evolved from terrestrial, not aquatic, algae.-***-"Notably, traits that land plants use to survive on land today are well conserved in some species of green algae.-***-"'We realized that algae have a cell wall that's similarly complex to terrestrial plant cell walls, which seemed peculiar because ancient algae were supposedly growing in water," says Harholt, Science Manager at the Carlsberg Laboratory. "We then started looking for other traits that would support the idea that algae were actually on land before they turned into land plants."-"Working with Moestrup, an expert in algae, they also explored structures (or rather, the loss of structures) that are hard to explain if algae only lived in water. For example, some green algae have lost their flagella, whip-like organelles that help single-celled organisms move around in water. All of the algae that are close relatives to land plants no longer have an eyespot, which they would use to swim toward light.-"Cell wall traits combined with the recently sequenced genome of terrestrial green algae Klebsormidium, (published in 2014, doi:10.1038/ncomms4978), revealed that this green alga shares a number of genes with land plants related to light tolerance and drought tolerance. With the genetic evidence in hand, we know that the traits have arisen linearly, rather than by convergent evolution.-"If their theory withstands scrutiny, it would begin to upend what's been cited in textbooks for over a century. The idea that plants jumped from water to land is credited to botanist Frederick Orpen Bower, although it is unclear whether that was his intended argument. In his 1908 tome "The Origin of a Land Flora," he simply proposed that the "invention" of alternating life cycles provided early land plants with a platform--the sporophyte--for evolutionary experimentation and thus adaptability.-***-"The researchers' biggest challenge will be to prove that a period of pre-adaptation led to the complex cell walls of land plants (although about 250 new genes were required for the formation of this terrestrial-friendly cell covering, which helps their case). They believe that these terrestrial green algae were advanced enough to survive on sandy surfaces, living on rain as a source of humidity. But with a small fossil record to go on--only spores exist from this period of evolutionary history--they will need to rely heavily on genetics to make their argument."-Comment: It seems they show evidence that land algae have been around a long time, but the issue still is, if life began in the sea, how did the algae get up onto land?
Origin of Life: early land life not long after the Cambrian
by David Turell , Monday, April 30, 2018, 19:18 (2400 days ago) @ David Turell
432 million years ago a land plant fossil:
https://www.newscientist.com/article/2167645-a-fossil-may-rewrite-the-story-of-how-plan...
"A plant fossil that gathered dust in a museum drawer for a century is the oldest fossil of large plants ever found.
"The find suggests we need to rethink the plant family tree. It has been estimated that land plants first emerged 515 million years ago but actual fossils are rare and not quite so old. Many botanists assume that the first land plants grew like mosses, and more complex plants like shrubs and trees evolved later.
"However, the new find adds to growing evidence that this picture may be back-to-front. Mosses and their relatives might be more “evolved” than we thought.
***
"Many botanists suspect that the moss condition evolved first, partly because mosses and their ilk seem to be the simplest living land plants. But a team led by Jiří Kvaček at the National Museum Prague, Czech Republic and Viktor Žárský at the Charles University, Prague says that this idea might be wrong – and they have fossil evidence.
"They have reanalysed a 432-million-year-old plant fossil that was discovered more than a century ago near Prague. The fossil belongs to a new species called Cooksonia barrandei. It is 4-5 centimetres high and up to 3 millimetres across.
“[The] Cooksonia barrandei we describe is the oldest unambiguous plant macrofossil known to date,“ says Žárský. The older fossils are all tiny fragments, mostly spores.
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"Beyond its age, the fossil is significant because it is a sporophyte. Since it is big, it’s likely that C. barrandei’s sporophytes could sustain themselves using photosynthesis. That makes this ancient plant more like a modern tree or shrub than a moss.
"What’s more, since C. barrandei is one of the earliest well-preserved land plants we’ve found, the researchers say it’s possible that the common ancestor of land plants also had these self-sustaining sporophytes.
“'Until now it was assumed that the ‘higher plants’ evolved from [mosses and their relatives],” says Žárský. But mosses, with their reduced sporophytes, might actually have evolved later.
"It all comes down to reproduction.
“'I was genuinely surprised to see this fossil – it’s very cool,” says Kevin Boyce at Stanford University in California. He agrees C. barrandei may well have made sporophytes that could nourish themselves.
"However, Boyce says it’s unclear what the first land plants were like. “It’s now basically up in the air,” he says, partly because the fossil record of plants is so patchy. He is reluctant to draw conclusions from C. barrandei because some of its more recent relatives are believed to have had a moss-like life cycle.
"However, Paul Kenrick at the Natural History Museum in London, UK is open to the idea that the first land plants were not moss-like.
"Kenrich co-authored a study published in March that used molecular data to infer the lifestyle of the first land plants. The research suggested mosses and their relatives belong to a distinct group descended from a more complex ancestor.
“'This implies that [moss-like plants] and their life cycle may not be ancestral, but rather derived,” he says. “Life cycle evolution in the earliest emergent plants needs a rethink.'”
Comment: This is not long after the Cambrian Explosion of animals. It lead to the plant bloom that confused Darwin. Evolution always results in complexity.
Origin of Life: early land life in algae fossil
by David Turell , Friday, March 27, 2020, 00:33 (1704 days ago) @ David Turell
A new finding, which may show first land life:
https://www.quantamagazine.org/billion-year-old-algae-and-newer-genes-hint-at-land-plan...
"Around 500 million years ago — when the Earth was already a ripe 4 billion years old — the first green plants appeared on dry land. Precisely how this occurred is still one of the big mysteries of evolution. Before then, terrestrial land was home only to microbial life. The first green plants to find their way out of the water were not the soaring trees or even the little shrubs of our present world. They were most likely soft and mossy, with shallow roots and few of the adaptations they would later evolve to survive and thrive on dry land. And though scientists agree that these plants evolved from some kinds of seaweed, we know comparatively little about those green algal ancestors."
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"The recently unearthed tiny fossil, smaller than a single grain of rice, appears to be the world’s oldest known specimen of green algae: It rolls back the clock on the confirmed existence of these algae by a staggering 200 million years. “It’s very daunting. A billion years — that’s at least five times older than the oldest dinosaurs,” said Xiao, who is a senior author on the Nature Ecology & Evolution paper that announced the discovery. “It’s before any animals. The world is very, very different from what we know today.'”
***
"He excavated some from formations near the city of Dalian in northern China, where geological maps had told him he was likely to find the green-hued rocks containing fossils from that remote epoch. But it wasn’t until he got back to the lab and examined them under an electron microscope that he understood the value of what he had found: “I was very excited when I saw the first piece of this green seaweed,” he said. “These kinds of fossils are totally new to science."
"Ancient as the fossilized algae are, they seem to have many of the characteristics also seen in much later green seaweeds. It isn’t just that they were clearly photosynthetic and multicellular — traits that help to define seaweeds but have murky evolutionary origins. “They have leaves, they have branches,” Tang said.
***
"The evolutionary innovations seen in Tang’s fossil may have helped to set algae on a path that eventually led them ashore by about 470 million years ago. But the transition to land life would probably have begun hundreds of millions of years earlier, with green algae adapting to survive in damp soil or sand that was subject to temporary drying. Evolutionary biologists have generally believed that this transformation probably arose in parallel with the appearance of more complex multicellular structures, some of which lent themselves to these adaptations."
Comment: All types of life started in the seas. When continents poked up into dry land, life got there some how. And the animals arrived and ate the plants and other animals. Life appeared 3.6-8 by ago and this development took a long time to happen.
Origin of Life: early land life in algae fossil
by dhw, Friday, March 27, 2020, 12:11 (1703 days ago) @ David Turell
QUOTE: The first green plants to find their way out of the water were not the soaring trees or even the little shrubs of our present world. They were most likely soft and mossy, with shallow roots and few of the adaptations they would later evolve to survive and thrive on dry land.
DAVID: All types of life started in the seas. When continents poked up into dry land, life got there some how. And the animals arrived and ate the plants and other animals. Life appeared 3.6-8 by ago and this development took a long time to happen.
The quote encapsulates what I see as the history of evolution – whether initiated by God or not. In terms of its advancement, it is a constant process of organisms surviving and thriving as they learn to cope with or exploit new conditions. If, very broadly speaking, we take “surviving” to mean staying the same and “exploiting” to mean making changes, we can see the logic of advancement, with each new wave of innovations building on what already existed, and expanding the range as environments change. In this context I think it’s crucial to keep in mind your comment that it took a long time. We often take for granted the figures, without considering what they entail. Not just centuries, not just thousands, not just millions, but thousands of millions of years, and millions of millions of generations of organisms. The time is so long that we can’t really imagine it, or the colossal variety of life forms which exist even now but existed up to 99% more in the course of those billions of years. I shan’t comment on its relevance to your theory, except to say that the mind boggles at the colossal range of life forms that have come and gone over this vast period of time. Thank you for yet another extremely interesting development in our understanding of life’s history.
Origin of Life: early land life in algae fossil
by David Turell , Friday, March 27, 2020, 20:58 (1703 days ago) @ dhw
QUOTE: The first green plants to find their way out of the water were not the soaring trees or even the little shrubs of our present world. They were most likely soft and mossy, with shallow roots and few of the adaptations they would later evolve to survive and thrive on dry land.
DAVID: All types of life started in the seas. When continents poked up into dry land, life got there some how. And the animals arrived and ate the plants and other animals. Life appeared 3.6-8 by ago and this development took a long time to happen.
dhw: The quote encapsulates what I see as the history of evolution – whether initiated by God or not. In terms of its advancement, it is a constant process of organisms surviving and thriving as they learn to cope with or exploit new conditions. If, very broadly speaking, we take “surviving” to mean staying the same and “exploiting” to mean making changes, we can see the logic of advancement, with each new wave of innovations building on what already existed, and expanding the range as environments change. In this context I think it’s crucial to keep in mind your comment that it took a long time. We often take for granted the figures, without considering what they entail. Not just centuries, not just thousands, not just millions, but thousands of millions of years, and millions of millions of generations of organisms. The time is so long that we can’t really imagine it, or the colossal variety of life forms which exist even now but existed up to 99% more in the course of those billions of years. I shan’t comment on its relevance to your theory, except to say that the mind boggles at the colossal range of life forms that have come and gone over this vast period of time. Thank you for yet another extremely interesting development in our understanding of life’s history.
It is an unfolding story as science digs in. Just as I noted in the Shapiro thread, we are now just seeing the purpose for bacteria staying around. Obvious purposes can be found as we keep studying. I deeply appreciate your permission to go on with this site so we can keep learning. Our knowledge is never completed. I'm delighted your search team found me in 2008. I've sure had fun.
Origin of Life: early land life in algae fossil
by dhw, Saturday, March 28, 2020, 13:17 (1702 days ago) @ David Turell
QUOTE: The first green plants to find their way out of the water were not the soaring trees or even the little shrubs of our present world. They were most likely soft and mossy, with shallow roots and few of the adaptations they would later evolve to survive and thrive on dry land.
DAVID: All types of life started in the seas. When continents poked up into dry land, life got there some how. And the animals arrived and ate the plants and other animals. Life appeared 3.6-8 by ago and this development took a long time to happen.
dhw: The quote encapsulates what I see as the history of evolution – whether initiated by God or not. In terms of its advancement, it is a constant process of organisms surviving and thriving as they learn to cope with or exploit new conditions. If, very broadly speaking, we take “surviving” to mean staying the same and “exploiting” to mean making changes, we can see the logic of advancement, with each new wave of innovations building on what already existed, and expanding the range as environments change. In this context I think it’s crucial to keep in mind your comment that it took a long time. We often take for granted the figures, without considering what they entail. Not just centuries, not just thousands, not just millions, but thousands of millions of years, and millions of millions of generations of organisms. The time is so long that we can’t really imagine it, or the colossal variety of life forms which exist even now but existed up to 99% more in the course of those billions of years. I shan’t comment on its relevance to your theory, except to say that the mind boggles at the colossal range of life forms that have come and gone over this vast period of time. Thank you for yet another extremely interesting development in our understanding of life’s history.
DAVID: It is an unfolding story as science digs in. Just as I noted in the Shapiro thread, we are now just seeing the purpose for bacteria staying around. Obvious purposes can be found as we keep studying. I deeply appreciate your permission to go on with this site so we can keep learning. Our knowledge is never completed. I'm delighted your search team found me in 2008. I've sure had fun.
I don’t know how many folk have followed our discussions since 2008, but those who have will probably have formed the impression that we are deadly foes! Nothing could be further from the truth. Despite our differences, I not only have the utmost respect for your faith and your erudition, but also for the personal qualities which have resulted in a lasting friendship. I too am delighted that the search team found you, and the fact is that without your vast range of contributions, the website would almost certainly have closed down long ago. Please carry on having fun!
Origin of Life: early land life in algae fossil
by David Turell , Saturday, March 28, 2020, 20:15 (1702 days ago) @ dhw
QUOTE: The first green plants to find their way out of the water were not the soaring trees or even the little shrubs of our present world. They were most likely soft and mossy, with shallow roots and few of the adaptations they would later evolve to survive and thrive on dry land.
DAVID: All types of life started in the seas. When continents poked up into dry land, life got there some how. And the animals arrived and ate the plants and other animals. Life appeared 3.6-8 by ago and this development took a long time to happen.
dhw: The quote encapsulates what I see as the history of evolution – whether initiated by God or not. In terms of its advancement, it is a constant process of organisms surviving and thriving as they learn to cope with or exploit new conditions. If, very broadly speaking, we take “surviving” to mean staying the same and “exploiting” to mean making changes, we can see the logic of advancement, with each new wave of innovations building on what already existed, and expanding the range as environments change. In this context I think it’s crucial to keep in mind your comment that it took a long time. We often take for granted the figures, without considering what they entail. Not just centuries, not just thousands, not just millions, but thousands of millions of years, and millions of millions of generations of organisms. The time is so long that we can’t really imagine it, or the colossal variety of life forms which exist even now but existed up to 99% more in the course of those billions of years. I shan’t comment on its relevance to your theory, except to say that the mind boggles at the colossal range of life forms that have come and gone over this vast period of time. Thank you for yet another extremely interesting development in our understanding of life’s history.
DAVID: It is an unfolding story as science digs in. Just as I noted in the Shapiro thread, we are now just seeing the purpose for bacteria staying around. Obvious purposes can be found as we keep studying. I deeply appreciate your permission to go on with this site so we can keep learning. Our knowledge is never completed. I'm delighted your search team found me in 2008. I've sure had fun.
dhw: I don’t know how many folk have followed our discussions since 2008, but those who have will probably have formed the impression that we are deadly foes! Nothing could be further from the truth. Despite our differences, I not only have the utmost respect for your faith and your erudition, but also for the personal qualities which have resulted in a lasting friendship. I too am delighted that the search team found you, and the fact is that without your vast range of contributions, the website would almost certainly have closed down long ago. Please carry on having fun!
I still find it lots of fun and very much enjoy our close relationship.
Origin of Life: information?
by xeno6696 , Sonoran Desert, Monday, December 16, 2013, 02:19 (3997 days ago) @ David Turell
The flippant reply, how did the designer transform C02 into life?
--
\"Why is it, Master, that ascetics fight with ascetics?\"
\"It is, brahmin, because of attachment to views, adherence to views, fixation on views, addiction to views, obsession with views, holding firmly to views that ascetics fight with ascetics.\"
Origin of Life: information?
by David Turell , Monday, December 16, 2013, 05:30 (3997 days ago) @ xeno6696
Matt: The flippant reply, how did the designer transform C02 into life?-All the hype about origin of life research boils down to my recent entry, which shows we know only what does not work:-Origin of Life: chemical problems (Introduction) An interview from the Huff Post -"Suzan Mazur: Woese is cited. His former collaborator Nigel Goldenfeld is not. But Goldenfeld mentioned to me just weeks ago at the Santa Fe Institute that he agrees with Woese regarding LUCA. Sutherland et al. seem to be talking about the same thing. They're looking for process. LUCA is a process, nothing material. [LUCA in research speak is the "last universal common ancestor"] Steve Benner: We have failed in any continuous way to provide a recipe that gets from the simple molecules that we know were present on early Earth to RNA. There is a discontinuous model which has many pieces, many of which have experimental support, but we're up against these three or four paradoxes, which you and I have talked about in the past. The first paradox is the tendency of organic matter to devolve and to give tar. If you can avoid that, you can start to try to assemble things that are not tarry, but then you encounter the water problem, which is related to the fact that every interesting bond that you want to make is unstable, thermodynamically, with respect to water. If you can solve that problem, you have the problem of entropy, that any of the building blocks are going to be present in a low concentration; therefore, to assemble a large number of those building blocks, you get a gene-like RNA -- 100 nucleotides long -- that fights entropy. And the fourth problem is that even if you can solve the entropy problem, you have a paradox that RNA enzymes, which are maybe catalytically active, are more likely to be active in the sense that destroys RNA rather than creates RNA. Suzan Mazur: I think things are shifting to nonmaterial events. Steve Benner: That's right. I think you're right about that. We have been trying for close to 10 years now to get what we call dynamic kinetic systems, a collection of small molecules interacting with each other, maybe some catalyzing transformations of others, a non-linear feedback, some kind of amplification and trying to find working examples, recipes, where you can actually go back and mix something and see something. We are finding all sorts of problems in getting behavior that we find useful, let alone Darwinian out of this. I'm hoping to walk out of the Gordon conference for sure with a clear understanding of how life originated by one of these schemes -- a dynamic scheme that involves A interacting with D interacting with C, back to A without my having--" -http://www.huffingtonpost.com/suzan-mazur/steve-benner-origins-souf_b_4374373.html