Biological complexity: vision complexity (Introduction)

by David Turell , Monday, November 16, 2015, 17:53 (3076 days ago) @ David Turell

Rhodopsin at molecular levels makes changes in 200 millions of a billion of a second:-http://phys.org/news/2015-11-molecular-breakdance.html-"The retinal chromophore in rhodopsin, also called vitamin A aldehyde, derives its light sensitivity from a repeating chain of single- and double-bonded carbon atoms. The absorption of a photon by retinal causes an extremely short transient weakening of a specific double bond resulting in rotation about that bond. Pinpointing how fast this so-called chemical isomerization reaction occurs has been difficult, however, and has largely tracked the technological advances in pulsed laser sources. With femtosecond lasers it was shown that the isomerization takes place within 200 femtoseconds (that is 200 millionths of a billionth of a second), and is likely a vibrationally-coherent chemical reaction, meaning the vibrational motions of the retinal chromophore itself help directing the isomerization reaction.-"Using a highly sensitive technique from the field of ultrafast spectroscopy called heterodyne-detected transient grating spectroscopy, scientists in the laboratories of Professors R. J. Dwayne Miller (University of Toronto and Max Planck Institute for the Structure and Dynamics of Matter) and Oliver P. Ernst (University of Toronto) revisited the isomerization reaction of bovine rhodopsin with unprecedented sensitivity and temporal resolution. Such an approach revealed that the isomerization takes place on a timescale of 30 femtoseconds. "It turns out that the primary step of vision is nearly ten times faster than anyone thought," says Professor Miller, "and the atomic motions are all perfectly choreographed by the protein." -"Temporal analysis of the experimental data revealed these choreographed vibrational dynamics, which are comprised of localized stretching, out-of-plane wagging, and torsional motions. "Such a fast timescale sets distinct limitations on the vibrationally-coherent reaction coordinate," says Dr. Philip Johnson, lead author of the study, "and this work indicates that it is local to the specific isomerizing double bond." "Moreover," he adds, "the isomerization reaction proceeds within a single period of the relevant torsional vibrational motion."-Comment: this is all automatic molecular action in the retina. No intelilgence involved, and a great design.